Iron mineral dissolution releases iron and associated organic carbon during permafrost thaw

Rhythmic radial oxygen loss enhances soil phosphorus bioavailability

Phosphorus (P) availability is vital for global primary productivity, yet it is often immobilized in soils by redox-inert crystalline iron (oxy)hydroxides. Here we show that diel radial oxygen loss (ROL) from plant roots induces redox fluctuations in the rhizosphere, activating these iron minerals and enhancing P mobilization. Nighttime reduction and daytime oxidation drive the formation of reactive metastable iron phases (RMPs) on root surfaces, forming a redox-active iron plaque. These RMPs undergo rapid dissolution-reformation cycles, facilitating P transfer from soil to porewater for plant uptake. Using multiple aquatic plants from agriculturally developed regions, we demonstrate that ROL broadly enhances soil P availability. In rice paddies, ROL-activated P release accounts for 8.7% of global P fertilizer input, contributing an estimated economic value of USD 0.52 billion annually. Our findings uncover a previously overlooked redox mechanism by which plants enhance P acquisition, with broad implications for nutrient cycling and agricultural sustainability.

Harnessing plant-microbe interactions: strategies for enhancing resilience and nutrient acquisition for sustainable agriculture

The rhizosphere, a biologically active zone where plant roots interface with soil, plays a crucial role in enhancing plant health, resilience, and stress tolerance. As a key component in achieving Sustainable Development Goal 2, the rhizosphere is increasingly recognized for its potential to promote sustainable agricultural productivity. Engineering the rhizosphere microbiome is emerging as an innovative strategy to foster plant growth, improve stress adaptation, and restore soil health while mitigating the detrimental effects of conventional farming practices. This review synthesizes recent advancements in omics technologies, sequencing tools, and synthetic microbial communities (SynComs), which have provided insights into the complex interactions between plants and microbes. We examine the role of root exudates, composed of organic acids, amino acids, sugars, and secondary metabolites, as biochemical cues that shape beneficial microbial communities in the rhizosphere. The review further explores how advanced omics techniques like metagenomics and metabolomics are employed to elucidate the mechanisms by which root exudates influence microbial communities and plant health. Tailored SynComs have shown promising potential in enhancing plant resilience against both abiotic stresses (e.g., drought and salinity) and biotic challenges (e.g., pathogens and pests). Integration of these microbiomes with optimized root exudate profiles has been shown to improve nutrient cycling, suppress diseases, and alleviate environmental stresses, thus contributing to more sustainable agricultural practices. By leveraging multi-disciplinary approaches and optimizing root exudate profiles, ecological engineering of plant-microbiome interactions presents a sustainable pathway for boosting crop productivity. This approach also aids in managing soil-borne diseases, reducing chemical input dependency, and aligning with Sustainable Development Goals aimed at global food security and ecological sustainability. The ongoing research into rhizosphere microbiome engineering offers significant promise for ensuring long-term agricultural productivity while preserving soil and plant health for future generations.

Role of Fe and Mn in organo-mineral-microbe interactions: evidence of carbon stabilization and transformation of organic matter leading to carbon greenhouse gas emissions

Up to 90% of organic matter (OM) in soils and sediments are stabilized and protected against microbial decomposition through organo-mineral interactions, formation of soil aggregates, pH, and oxygen availability. In soils and sediment systems, OM is associated with mineral constituents promoting carbon persistence and sequestration of which iron (Fe) and manganese (Mn) are crucial components. Under anoxic condition, microbes couple the decomposition of OM to the oxidative/reductive transformation of Fe/Mn minerals leading to carbon greenhouse gas (C-GHG) emissions (i.e. CH4 and CO2). Although these organo-mineral-microbe interactions have been observed for decades, the bio-geochemical mechanisms governing the switch from OM stability toward OM degradation are not fully understood. Interest in this field have been growing steadily given the interest in global warming caused by OM decomposition leading to C-GHG emissions. This review emphasizes the dual role of Fe/Mn minerals in both OM stability and decomposition. Additionally, we synthesize the conceptual understanding of how Fe/Mn minerals govern OM dynamics and the resultant C-GHG emissions via microbial-mediated carbon transformation. We highlight the need for interdisciplinary research to better understand organo-Fe/Mn mineral-microbial interactions to develop management handles for climate mitigation strategies.

Soil Carbon Sequestration: Role of Fe Oxides and Polyphenol Oxidase Across Temperature and Cultivation Systems

The "enzyme latch" and "Fe gate" mechanisms are crucial factors influencing soil carbon sequestration capacity, playing a key role in understanding the dynamic changes in soil organic carbon (SOC). However, there is a lack of research regarding polyphenol oxidase (PPO) activity and the concentration of iron oxides in paddy soils under varying incubating temperatures and cultivation practices. This study was conducted over three years in a double-cropping rice area in southern China, incorporating systematic soil sampling to measure PPO activity, Fe oxide concentration, and basic physicochemical properties. The results showed that temperature did not significantly affect either PPO activity or the concentration of Fe oxides. Additionally, compared to conventional management (CK), organic management led to a decrease in Fe oxides (Fe bound to organic matter, reactive Fe, and total free Fe) by 19.1%, 16.2%, and 13.7%, respectively (p < 0.05). At the same time, PPO activity did not show any significant changes. Our results indicated that short-term (5 weeks) incubation temperature did not affect PPO activity or Fe oxides, while organic farming decreased Fe oxides without influencing PPO activity. PPO activity increased with the length of the incubation period.

Thermokarst lake drainage halves the temperature sensitivity of CH4 release on the Qinghai-Tibet Plateau

Thermokarst lakes as hot spots of methane (CH4) release are crucial for predicting permafrost carbon feedback to global warming. These lakes are suffering from serious drainage events, however, the impacts of lake drainage on CH4 release remain unclear. Here, synthesizing field drilling, incubation experiments, and carbon composition and microbial communities, we reveal the temperature sensitivities (Q10) and drivers of CH4 release from drainage-affected lakes on the Qinghai-Tibet Plateau. We find that cumulative CH4 release decreases with depth, where 0-30 cm-depth sediment accounts for 97% of the whole release. The Q10 of surface sediment is 2 to 4 times higher than deep layers, but roughly 56% lower than the non-drainage lakes. The response of CH4 release to warming is mainly driven by microbial communities (49.3%) and substrate availability (30.3%). Our study implies that drainage mitigates CH4 release from thermokarst lakes and sheds light on crucial processes for understanding permafrost carbon projections.

Effects of dimethylarsenate coprecipitation with ferrihydrite on Fe(II)-induced mineral transformation and the release of dimethylarsenate

Organoarsenicals are toxic pollutants of global concern, and their environmental geochemical behavior might be greatly controlled by iron (Fe) (hydr)oxides through coprecipitation, which is rarely investigated. Here, the effects of the incorporation of dimethylarsenate (DMAs(V)), a typical organoarsenical, into the ferrihydrite (Fh) structure on the mineral physicochemical properties and Fe(II)-induced phase transformation of DMAs(V)-Fh coprecipitates with As/Fe molar ratios up to 0.0876 ± 0.0036 under anoxic conditions and the accompanying DMAs(V) release were investigated. The presence of DMAs(V) during Fh formation gradually decreases the mineral crystallinity. With increasing DMAs(V) content, the specific surface areas of the coprecipitates are decreased owing to particle aggregation, while the micropore sizes are negligible changed. Fourier transformed infrared (FTIR) and As K-edge X-ray absorption near-edge structure (XANES) and extended X-ray absorption fine structure (EXAFS) spectroscopy show that, part of DMAs(V) binds to Fh surfaces in the coprecipitates by forming bidentate binuclear inner-sphere complexes through As-O-Fe bonds. During the reaction of the coprecipitate with 1 mM Fe(II) for 336 h, DMAs(V) inhibits the Fh transformation to goethite. No goethite forms at pH 4; at pH 7 low content of DMAs(V) hinders the further conversion of lepidocrocite to goethite, while high content of DMAs(V) completely inhibits goethite formation. DMAs(V) in the coprecipitate is continuously released into the solution, with the released proportion being generally increased with the increase of DMAs(V) content, pH and Fe(II) addition, probably owing to the desorption of weak inner- and outer-sphere DMAs(V) complexes bound on the Fh surfaces upon the Fh aging and transformation to lepidocrocite and goethite. These results provide deep insights into the fate and mobility of organoarsenical pollutants mediated by Fe (hydr)oxides in natural environments, and help design effective and ecofriendly remediation strategies for As polluted soils and sediments.

Heterotrophic denitrification enhancement via effective organic matter degradation driven by suitable iron dosage in sediment

The control of internal pollution was important throughout the restoration of the lake, especially the removal of sediment internal nitrogen. Experiments involving incubation were conducted in this study to investigate the effects of iron remediation on nitrogen in both water and sediment. Adding iron with varying dosage had different effects on the nutrients content and other properties of water and sediment in remediation. The higher the addition dosage of iron, the more iron ions were released into the interstitial and overlying water. The effect of 5% and 10% iron dosage on the interstitial and overlying water were more obvious, which can significantly increase the pH and decrease the ORP of the sediment, and significantly increase the TN and NH4+-N contents in overlying water. Nevertheless, higher iron addition dosage decreased relative abundance of the genera related to denitrification (Thiobacillus) and DNRA (Bacillus). The relative abundance of Anaerolineae was increased with the iron addition dosage, promoted the reduction of organic matter and iron cycle in sediment. The iron addition dosage of 2% had less effect on the overlying water quality, and promoted the nitrogen removal process by changing the abundance of microorganisms related to the sediment nitrogen cycle. This study provides essential information for internal pollution control of lakes and serves as a valuable reference for developing eutrophication management framework.

Abrupt transformation of west Greenland lakes following compound climate extremes associated with atmospheric rivers

Arctic ecosystems are affected by accelerated warming as well as the intensification of the hydrologic cycle, yet understanding of the impacts of compound climate extremes (e.g., simultaneous extreme heat and rainfall) remains limited, despite their high potential to alter ecosystems. Here, we show that the aquatic ecosystems in historically arid west Greenland have undergone an ecological transformation after a series of atmospheric rivers that simultaneously produced record heat and rainfall hit the region in autumn 2022. We analyzed a unique, long-term lake dataset and found that compound climate extremes pushed Arctic lakes across a tipping point. As terrestrial-aquatic linkages were strengthened, lakes synchronously transformed from "blue" lakes with high transparency and low pelagic primary production to "brown" in less than a year, owing to a large influx of dissolved organic material and metals, with iron concentrations increasing by more than two orders of magnitude. The browning of lake waters reduced light penetration by 50% across lakes. The resulting light limitation altered plankton distributions and community structure, including a major reduction in prokaryotic diversity and an increase in algal groups capable of metabolizing organic carbon sources. As a result, lakes shifted from being summer carbon sinks to sources, with a >350% increase in carbon dioxide flux from lakes to the atmosphere. The remarkably rapid, coherent transformation of these Arctic ecosystems underscores the synergistic and unpredictable impacts of compound extreme events and the importance of their seasonal timing, especially in regions with negative moisture balance.

Dynamic soil columns simulate Arctic redox biogeochemistry and carbon release during changes in water saturation

Thawing Arctic permafrost can induce hydrologic change and alter redox conditions, shifting the balance of soil organic matter (SOM) decomposition. There remains uncertainty about how soil saturation and redox transitions impact dissolved and gas phase carbon fluxes, and efforts to link hydrobiogeochemical processes to ecosystem-scale models are limited. This study evaluates SOM decomposition of Arctic tundra soils using column experiments, water chemistry measurements, microbial community analysis, and a PFLOTRAN reactive transport model. Soil columns from a thermokarst channel (TC) and an upland tundra (UC) were exposed to cycles of saturation and drainage, which controlled carbon emissions. During saturation, an outflow of dissolved organic carbon from the UC soil correlated with elevated reduced iron and decreased pH; during drainage, UC carbon dioxide fluxes were 70% higher than TC fluxes. Intermittent methane release was observed for TC, consistent with higher methanogen abundance. Slower drainage in the TC soil correlated with more subtle biogeochemical changes. PFLOTRAN simulations captured experimental trends in soil carbon fluxes, oxygen concentrations, and water contents. The model was then used to evaluate additional soil water drainage rates. This study emphasizes the importance of considering hydrologic change when evaluating and simulating SOM decomposition in dynamic Arctic tundra environments.

Heating-Induced Redox Property Dynamics of Peat Soil Dissolved Organic Matter in a Simulated Peat Fire: Electron Exchange Capacity and Molecular Characteristics

Peatlands store one-third of the world's soil organic carbon. Globally increased fires altered peat soil organic matter chemistry, yet the redox property and molecular dynamics of peat-dissolved organic matter (PDOM) during fires remain poorly characterized, limiting our understanding of postfire biogeochemical processes. Clarifying these dynamic changes is essential for effective peatland fire management. This study demonstrates temperature-dependent dynamic changes in the electron exchange capacity (EEC) of PDOM by simulating peat soil burning, significantly affecting microbial iron reduction. At low fire temperatures (200-250 °C), the EEC remains constant by releasing more phenolic moieties to enhance the electron-donating capacity (EDC). Higher temperatures (500 °C) diminish 90% of the EEC by consuming phenolic-quinone moieties. Pyrolytic PDOM (pyPDOM) contributes to 40% of the EEC of peat soil, with this contribution declining at higher temperatures. Phenolic-quinone moieties remain the primary redox-active moieties in pyPDOM. Fourier transform ion cyclotron resonance mass spectrometry analysis shows that postfire EDC depends more on phenolic types than abundance, with monophenol-like molecules (C < 12) being more significant than polyphenol-like (C ≥ 12). Quinone moieties in pyPDOM are associated with high-oxygen condensed aromatics, and their depletion reduces the electron-accepting capacity, weakening its electron shuttle effect in microbial iron reduction. Our findings enhance the understanding of the changes in PDOM redox properties during fires.

Metal Mobilization from Thawing Permafrost Is an Emergent Risk to Water Resources

Metals are ubiquitous in Earth's Critical Zone and play key roles in ecosystem function, human health, and water security. They are essential nutrients at low concentrations, yet some metals are toxic at a high dose. Permafrost thaw substantially alters all the physical and chemical processes governing metal mobility, including water movement and solute transport and (bio)geochemical interactions involving water, organic matter, minerals, and microbes. The outcomes of these interconnected changes are nonintuitive yet hold global implications for water resources and ecosystem health. This Perspective outlines the primary factors affecting metal mobility in thawing permafrost and underscores the urgent need and priorities for interdisciplinary research to better understand this emerging issue.

Iron-oxidizing microorganisms affect the iron-bound organic carbon in the subsoil of alpine grassland during the thawing of seasonal frozen soil

Iron (Fe) minerals possess a huge specific surface area and high adsorption affinity, usually considered as "rust tanks" of organic carbon (OC), playing an important role in global carbon storage. Microorganisms can change the chemical form of Fe by producing Fe-chelating agents such as side chains and form a stable complex with Fe(III), which makes it easier for microorganisms to use. However, in seasonal frozen soil thawing, the succession of soil Fe-cycling microbial communities and their coupling relationship with Fe oxides and Fe-bound organic carbon (Fe-OC) remains unclear. We characterized changes in the Fe phase, Fe-OC, Fe-oxidizing bacteria (FeOB), and Fe-reducing bacteria (FeRB) in the subsoil and analyzed the microbial mechanism underlying Fe-OC changes in alpine grassland by constructing a composite structural equation model (SEM). We found that the Fe(III) content consistently exceeded that of Fe(II). Among the three types of Fe oxides, organically complex Fe (Fep) decreased from 2.54 to 2.30 g·kg-1, whereas the opposite trend was observed for poorly crystalline Fe (Feo). The Fe-OC content also decreased (from 10.31 to 9.47 g·kg-1; p < 0.05). Fe-cycling microorganisms were markedly affected by the thawing of frozen soil (except FeRB). Fep and Feo directly affected changes in Fe-OC. Soil moisture (SM) and FeOB were significant indirect factors affecting Fe-OC changes. Freeze-thaw changes in the subsoil of alpine grassland in Central Asia significantly affected FeOB and Fe oxides, thus affecting the Fe-OC content. To the best of our knowledge, this was the first study to examine the influence of Fe-cycling microorganisms on the Fe phase and Fe-OC in the soil of alpine grassland in Central Asia. Overall, our findings provide scientific clues for exploring the biogeochemical cycle process in future climate change.

Responses of various organic carbon pools to elevated temperatures in soils

Soil organic carbon (SOC) and its composition may be vulnerable to the effects of microbial degradation and various environmental stresses. Hitherto, the responses of various SOC pools to warming have rarely been explored. In this study, an incubation experiment was performed with top soils (0-20 cm) from Alfisol and Ultisol at three temperatures (15, 30 and 45 °C). Warming significantly decreased the contents of SOC, particulate organic carbon (POC), mineral associated organic carbon (MAOC) and iron bound organic carbon (Fe-OC) to different degrees. However, the proportion of MAOC and Fe-OC to SOC increased by 3.6-13.3 % and 3.8-7.3 %, respectively, with rising temperature, suggesting that the temperature response of MAOC and especially Fe-OC mineralization is lower than other SOC pools. From the analysis of the Fe-OC structure by various spectroscopic techniques, it was found that elevated temperature increased the proportion of aromatic C but decreased that of aliphatic C to Fe-OC. Soil pH, identified as the most important environmental variable for controlling Fe-OC chemical structure by Mantel test, exhibited a significant negative correlation with aliphatic Fe-OC and positive correlation with aromatic Fe-OC. Synchrotron radiation-based Fourier transform infrared (SR-FTIR) spectroscopy affirmed the higher binding strength of aromatic C with Fe oxides than aliphatic C in both soils. In addition, elevated temperature induced the increase and decrease of K-strategy bacteria and r-strategy bacteria, respectively, indicating warming slowed the bacterial growth, which could produce less necromass carbon for the association of Fe oxides and caused the decrease in Fe-OC. In summary, warming-induced changes in pH and microbial community structure can lead to a decrease in Fe-OC content, whereas the increased proportions confirmed that Fe-OC remains the most stable OC pool facing with short-term soil warming. These findings are helpful for better understanding the importance of soil minerals, especially Fe oxides, in the regulation of soil C sequestration under the context of climate change.

Salinity increases under sea level rise strengthens the chemical protection of SOC in subtropical tidal marshes

The rise in sea levels due to global warming could significantly impact the soil organic carbon (SOC) pool in coastal tidal marshes by altering soil salinity and flooding conditions. However, the effects of these factors on SOC protection in coastal tidal marshes are not fully understood. In this study, we employed a space-for-time approach to investigate the variations in soil active carbon components and mineral-associated organic carbon under different salinity gradients (freshwater and brackish) and flooding frequencies (high and low tidal flats). The soil organic carbon (SOC) and easily oxidizable organic carbon (EOC) contents at the low-flooding frequency sites were higher than those at the high-flooding frequency sites. The dissolved organic carbon (DOC) content was higher at the high-salinity sites compared to the low-salinity sites, while the soil microbial biomass carbon (MBC) content was higher at the low-salinity sites than at the high-salinity sites. The EOC/SOC and DOC/SOC ratios were greater at the high-salinity sites than at the low-salinity sites, whereas the MBC/SOC ratios were higher at the low-salinity sites than at the high-salinity sites. Iron (Fe) and aluminum (Al) mineral-associated organic carbon [Fe(Al)-OC] and calcium-associated organic carbon (Ca-OC) contents were higher at the high-salinity sites compared to the low-salinity sites, and at the low-flooding frequency sites compared to the high-flooding frequency sites. Meanwhile, Fe(Al)-OC was the dominant fraction among mineral-associated organic carbon at all sites. The dominant phyla of bacterial community included Proteobacteria (49.31 %-66.36 %), Firmicutes (2.67 %-28.44 %), Chloroflexi (3.81 %-9.54 %), and Acidobacteria (4.28 %-7.02 %). In addition, Desulfobacca, a sulfate-reducing bacterium, promoted the formation of mineral-associated organic carbon. Random forest analysis showed that SOC and DOC were key factors in promoting mineral-associated organic carbon formation. Partial least squares path modeling (PLS-PM) indicated that sea level rise affects DOC content by altering soil physicochemical properties, promoting the formation of mineral-associated organic carbon. In summary, while soil organic carbon activity increases, the chemical association of minerals with organic carbon is becoming increasingly crucial for the protection of organic carbon under rising salinity conditions driven by sea level rise.

Iron‑carbon complex types and bonding forms jointly control organic carbon mineralization in paddy soils

The crucial role of iron (Fe) oxides in stabilizing soil organic carbon (SOC) is well recognized, but their effects on SOC mineralization remain poorly understood. To address this knowledge gap, we evaluated the effects of four typical Fe-bound OC (Fe-OC) complexes including adsorbed ferrihydrite (Fh)- and goethite (Goe)- 13C, coprecipitated Fh/Goe-13C and 13C-glucose as the control, on OC mineralization during an 80-day anaerobic incubation in a paddy soil. 13C-tracing indicated that Fe-13C complexes significantly stimulated CO2 emissions from both the input 13C and SOC compared with glucose alone. In contrast, the addition of Fh- and Goe-C complexes consistently inhibited CH4 emissions by 72-91 % and 21-61 % compared with glucose addition, respectively. Fe-OC complexes reduced the CO2 equivalent by 62-71 % and 17-41 % in soils with Fh-C and Goe-C complexes, respectively. We concluded that Fe crystallinity and its bonding forms with organic carbon jointly control SOC mineralization. The coprecipitated Goe-C complexes had the lowest OC mineralization rate and highest OC residence time among four Fe-OC complexes. These findings highlighted that promoting the formation of coprecipitated well-ordered minerals would increase SOC sequestration by reducing OC mineralization and mitigating the global warming effect in paddy management.

Biogeochemical cycles of iron: Processes, mechanisms, and environmental implications

The iron (Fe) biogeochemical cycle is critical for abiotic and biological environmental processes that overlap spatially and may compete with each other. The development of modern molecular biology technologies promoted the understanding of the electron transport mechanisms of Fe-cycling-related microorganisms. Recent studies have revealed a novel pathway for microaerophilic ferrous iron (Fe(II))-oxidizers in extracellular Fe(II) oxidation. In addition, OmcS, OmcZ, and OmcE nanowires on the cell surface have been shown to promote electron transfer between microorganisms and their environment. These processes affect the fate of pollutants in directly or indirectly ways, such as greenhouse gas emissions. In this review, these advances and the environmental implications of the Fe cycle process were discussed, with a particular focus on the mechanisms of intracellular or extracellular electron transport in microorganisms.

Metallic protection of soil carbon: divergent drainage effects in Sphagnum vs. non-Sphagnum wetlands

The established paradigm assumes that drainage may decrease the vast soil organic carbon (SOC) reservoir in global wetlands. Yet drainage can also promote SOC stabilization by fostering the accrual of metal-bound organic carbon (bound OC) upon oxygen exposure. Here, this emergent mechanism is tested for the first time at a regional scale, using literature data and a nationwide, pairwise survey of drained wetlands across China. We show that long-term (15-55 years) drainage largely increased metallic protection of SOC (bound OC%) in non-Sphagnum wetlands, but consistently decreased bound OC% in Sphagnum wetlands following replacement of the 'rust engineer' Sphagnum by herbaceous plants. Improved SOC stock estimates based on 66 soil profiles reveal that bound OC increases can compensate for the loss of unbound SOC components in non-Sphagnum wetlands with substantial accrual of reactive metals. Metallic stabilization of wetland SOC is hence a widespread but overlooked mechanism that is heavily influenced by vegetational shifts. Incorporating this novel mechanism into models will improve prediction of wetland SOC dynamics under shifting hydrological regimes.

The Influence of Seawater on Fe(II)-Catalyzed Ferrihydrite Transformation and Its Subsequent Consequences for C Dynamics

Short-range-ordered minerals like ferrihydrite often bind substantial organic carbon (OC), which can be altered if the minerals transform. Such mineral transformations can be catalyzed by aqueous Fe(II) (Fe(II)aq) in redox-dynamic environments like coastal wetlands, which are inundated with seawater during storm surges or tidal events associated with sea-level rise. Yet, it is unknown how seawater salinity will impact Fe(II)-catalyzed ferrihydrite transformation or the fate of bound OC. We reacted ferrihydrite with Fe(II)aq under anoxic conditions in the absence and presence of dissolved organic matter (DOM). We compared treatments with no salts (DI water), NaCl-KCl salts, and artificial seawater mixes (containing Ca and Mg ions) with or without SO42-/HCO3-. Both XRD and Mössbauer showed that NaCl-KCl favored lepidocrocite formation, whereas Ca2+/Mg2+/SO42-/HCO3- ions in seawater overrode the effects of NaCl-KCl and facilitated goethite formation. We found that the highly unsaturated and phenolic compounds (HuPh) of DOM selectively bound to Fe minerals, promoting nanogoethite formation in seawater treatments. Regardless of salt presence, only 5-9% of Fe-bound OC was released during ferrihydrite transformation, enriching HuPh relative to aliphatics in solution. This study offers new insights into the occurrence of (nano)goethite and the role of Fe minerals in OC protection in coastal wetlands.

Divergent Changes in Soil Iron-Bound Organic Carbon Between Distinct Determination Methods

Fe-OC is crucial for SOC preservation in the global ecosystem. However, there is still significant uncertainty in the determination methods of Fe-OC, and these methods are often not calibrated to each other, making the Fe-OC content by different methods impossible to compare. Here, Fe-OC is analyzed by the CBD method and the SD method from 45 soils from different land types (e.g., wetland, grassland, and forest) to compare and analyze the uncertainty and influencing factors between the two methods. Our results showed that the Fe-OC contributions to SOC (fFe-OC) measured by CBD and SD methods were significantly lower in the wetland ecosystem than in grassland and forest ecosystems. The Fe-OC content and fFe-OC in the grassland ecosystem was significantly higher using the CBD method compared to the SD method, with no significant difference between the methods in wetland and forest ecosystems. The random forest model revealed that Fe-OCCBD content was mainly affected by C/N, Clay%, and TC, whereas SOC, total nitrogen, and soil inorganic carbon were the main influences on Fe-OCSD. Taken together, our findings highlight the importance of incorporating ecosystem types and soil properties into soil carbon estimation models when predicting and estimating Fe-OC and its contribution to SOC.

Interactions between iron and carbon in permafrost thaw ponds

Thawing permafrost forms "thaw ponds" that accumulate and transport organic carbon (OC), redox-active iron (Fe), and other elements. Although Fe has been shown to act as a control on the microbial degradation of OC in permafrost soils, the role of iron in carbon cycling in thaw ponds remains poorly understood. Here, we investigated Fe-OC interactions in thaw ponds in partially and fully thawed soils ("bog" and "fen" thaw ponds, respectively) in a permafrost peatland complex in Abisko, Sweden, using size separation (large particulate fraction (LPF), small particulate fraction (SPF), and dissolved fraction (DF)), acid extractions, scanning electron microscopy (SEM), Fe K-edge X-ray absorption spectroscopy (XAS), and Fourier Transform Infrared (FTIR) spectroscopy. The bulk total Fe (total suspended Fe) in the bogs ranged from 135 mg/L (mean = 13 mg/L) whereas the fens exhibited higher total Fe (1.5 to 212 mg/L, mean = 30 mg/L). The concentration of bulk total OC (TOC) in the bog thaw ponds ranged from 50 to 352 mg/L (mean = 170 mg/L), higher than the TOC concentration in the fen thaw ponds (8.5 to 268 mg/L, mean = 17 mg/L). The concentration of 1 M HCl-extractable Fe in the bog ponds was slightly lower than that in the fens (93 ± 1.2 and 137 ± 3.5 mg/L Fe, respectively) with Fe predominantly (>75 %) in the DF in both thaw stages. Fe K-edge XAS analysis showed that while Fe(II) was the predominant species in LPF, Fe(III) was more abundant in the DF, indicating that the stage of thawing and particle size may control Fe redox state. Furthermore, Fe(II) and Fe(III) were partially complexed with natural organic matter (NOM, 8 to 80 %) in both thaw ponds. Results of our work suggest that Fe and OC released during permafrost thaw into thaw ponds (re-)associate, potentially protecting OC from microbial decomposition while also stabilizing the redox state of Fe.

The effects of climate and soil depth on living and dead bacterial communities along a longitudinal gradient in Chile

Soil bacterial communities play a critical role in shaping soil stability and formation, exhibiting a dynamic interaction with local climate and soil depth. We employed an innovative DNA separation method to characterize microbial assemblages in low-biomass environments such as deserts and distinguish between intracellular DNA (iDNA) and extracellular DNA (eDNA) in soils. This approach, combined with analyses of physicochemical properties and co-occurrence networks, investigated soil bacterial communities across four sites representing diverse climatic gradients (i.e., arid, semi-arid, Mediterranean, and humid) along the Chilean Coastal Cordillera. The separation method yielded a distinctive unimodal pattern in the iDNA pool alpha diversity, increasing from arid to semi-arid climates and decreasing in humid environments, highlighting the rapid feedback of the iDNA community to increasing soil moisture. In the arid region, harsh surface conditions restrict bacterial growth, leading to peak iDNA abundance and diversity occurring in slightly deeper layers than the other sites. Our findings confirmed the association between specialist bacteria and ecosystem-functional traits. We observed transitions from Halomonas and Delftia, resistant to extreme arid environments, to Class AD3 and the genus Bradyrhizobium, associated with plants and organic matter in humid environments. The distance-based redundancy analysis (dbRDA) analysis revealed that soil pH and moisture were the key parameters that influenced bacterial community variation. The eDNA community correlated slightly better with the environment than the iDNA community. Soil depth was found to influence the iDNA community significantly but not the eDNA community, which might be related to depth-related metabolic activity. Our investigation into iDNA communities uncovered deterministic community assembly and distinct co-occurrence modules correlated with unique bacterial taxa, thereby showing connections with sites and key environmental factors. The study additionally revealed the effects of climatic gradients and soil depth on living and dead bacterial communities, emphasizing the need to distinguish between iDNA and eDNA pools.

Uranium Speciation and Mobilization in Thawing Permafrost

Uranium is a toxic and pervasive geogenic contaminant often associated with organic matter. Its abundance and speciation in organic-rich permafrost soils are unknown, thereby limiting our ability to assess risks associated with uranium mobilization during permafrost thaw. In this study, we assessed uranium speciation in permafrost soil and porewater liberated during thaw using active-layer and permafrost samples from a study area in Yukon, Canada where elevated uranium concentrations occur in bedrock and groundwater. Permafrost contained 1.1-28 wt % organic carbon and elevated uranium (range 7.6-1040 μg g-1, median 25 μg g-1) relative to local bedrock. The highest soil uranium concentrations were encountered in catchments hosting uranium-enriched bedrock and correlated positively with soil organic carbon. X-ray absorption spectroscopy, micro-X-ray fluorescence, and electron microscopy analyses revealed that solid-phase uranium predominantly occurs as uranium(VI) associated with soil organic matter. Extended X-ray absorption fine structure (EXAFS) analyses suggested the presence of uranium(VI) coordinated with carbon, consistent with bidentate-mononuclear uranyl complexation on carboxyl groups. Permafrost thaw produced circumneutral pH porewater (pH 6.2-7.5) with elevated dissolved uranium (0.5-203 μg L-1). Geochemical modeling indicated that calcium-uranyl-carbonate complexes dominated the dissolved uranium speciation. This study highlights that permafrost soil can mobilize uranium upon thaw and that uranium fate is linked to dynamic biogeochemical reactions involving organic carbon and groundwater chemistry.

Preservation of Organic Carbon Associated with Iron on Continental Shelves Influenced by Hydrodynamic Processes

Understanding the environmental fate of organic carbon associated with iron (OC-Fe) is critically important for investigating OC preservation in aquatic systems. Here, we first investigate 13C and 14C isotopes of OC-Fe within grain size-fractionated sediments retrieved from the East China Sea and estimate their sources and reactivities of OC-Fe through isotope-mixing models and thermal pyrolysis approaches in order to reveal the fate of OC-Fe on continental shelves influenced by hydrodynamic processes. Our results show that the OC-Fe proportion in total OC (fOC-Fe) in the sortable silt fractions (20-63 μm) is the highest among three grain size fractions, likely suggesting that hydrodynamics may enhance the iron protection on OC. In addition, Δ14COC-Fe values fall within the range of from -358.73 to -64.03‰, and both Δ14COC-Fe values and ancient OC-Fe% exhibit strong positive linear relationships with fOC-Fe. This emphasized that the hydrodynamic processes may cause the ancient OC to be tightly associated with Fe, accompanying OC-Fe aging. Our findings shed new light on the preservation of OC-Fe in marginal seas to advance the recognition of carbon "rusty sinks" in seafloor sediments.

Emerging investigator series: preferential adsorption and coprecipitation of permafrost organic matter with poorly crystalline iron minerals

Future permafrost thaw will likely lead to substantial release of greenhouse gases due to thawing of previously unavailable organic carbon (OC). Accurate predictions of this release are limited by poor knowledge of the bioavailability of mobilized OC during thaw. Organic carbon bioavailability decreases due to adsorption to, or coprecipitation with, poorly crystalline ferric iron (Fe(III)) (oxyhydr)oxide minerals but the maximum binding extent and binding selectivity of permafrost OC to these minerals is unknown. We therefore utilized water-extractable organic matter (WEOM) from soils across a permafrost thaw gradient to quantify adsorption and coprecipitation processes with poorly crystalline Fe(III) (oxyhydr)oxides. We found that the maximum adsorption capacity of WEOM from intact and partly thawed permafrost soils was similar (204 and 226 mg C g-1 ferrihydrite, respectively) but decreased to 81 mg C g-1 ferrihydrite for WEOM from the fully thawed site. In comparison, coprecipitation of WEOM from intact and partly thawed soils with Fe immobilized up to 925 and 1532 mg C g-1 Fe respectively due to formation of precipitated Fe(III)-OC phases. Analysis of the OC composition before and after adsorption/coprecipitation revealed that high molecular weight, oxygen-rich, carboxylic- and aromatic-rich OC was preferentially bound to Fe(III) minerals relative to low molecular weight, aliphatic-rich compounds which may be more bioavailable. This selective binding effect was stronger after adsorption than coprecipitation. Our results suggest that OC binding by Fe(III) (oxyhydr)oxides sharply decreases under fully thawed conditions and that small, aliphatic OC molecules that may be readily bioavailable are less protected across all thaw stages.

High-Resolution Tandem Mass Spectrometry-Based Analysis of Model Lignin-Iron Complexes: Novel Pipeline and Complex Structures

Understanding the chemical nature of soil organic carbon (SOC) with great potential to bind iron (Fe) minerals is critical for predicting the stability of SOC. Organic ligands of Fe are among the top candidates for SOCs able to strongly sorb on Fe minerals, but most of them are still molecularly uncharacterized. To shed insights into the chemical nature of organic ligands in soil and their fate, this study developed a protocol for identifying organic ligands using ultrahigh-performance liquid chromatography-high-resolution tandem mass spectrometry (UHPLC-HRMS/MS) and metabolomic tools. The protocol was used for investigating the Fe complexes formed by model compounds of lignin-derived organic ligands, namely, caffeic acid (CA), p-coumaric acid (CMA), vanillin (VNL), and cinnamic acid (CNA). Isotopologue analysis of 54/56Fe was used to screen out the potential UHPLC-HRMS (m/z) features for complexes formed between organic ligands and Fe, with multiple features captured for CA, CMA, VNL, and CNA when 35/37Cl isotopologue analysis was used as supplementary evidence for the complexes with Cl. MS/MS spectra, fragment analysis, and structure prediction with SIRIUS were used to annotate the structures of mono/bidentate mono/biligand complexes. The analysis determined the structures of monodentate and bidentate complexes of FeLxCly (L: organic ligand, x = 1-4, y = 0-3) formed by model compounds. The protocol developed in this study can be used to identify unknown organic ligands occurring in complex environmental samples and shed light on the molecular-level processes governing the stability of the SOC.

Cycling and persistence of iron-bound organic carbon in subseafloor sediments

Reactive iron (FeR) serves as an important sink of organic carbon (OC) in marine surface sediments, which preserves approximately 20% of total OC (TOC) as reactive iron-bound OC (FeR-OC). However, the fate of FeR-OC in subseafloor sediments and its availability to microorganisms, remain undetermined. Here, we reconstructed continuous FeR-OC records in two sediment cores of the northern South China Sea encompassing the suboxic to methanic biogeochemical zones and reaching a maximum age of ~100 kyr. The downcore FeR-OC contributes a relatively stable proportion of 13.3 ± 3.2% to TOC. However, distinctly lower values of less than 5% of TOC, accompanied by notable 13C depletion of FeR-OC, are observed in the sulfate-methane transition zone (SMTZ). FeR-OC is suggested to be remobilized by microbially mediated reductive dissolution of FeR and subsequently remineralized, the flux of which is 18-30% of the methane consumption in the SMTZ. The global reservoir of FeR-OC in microbially active Quaternary marine sediments could be 19-46 times the size of the atmospheric carbon pool. Thus, the FeR-OC pool may support subseafloor microorganisms and contribute to regulating Earth's carbon cycle.

Microbially Driven Iron Cycling Facilitates Organic Carbon Accrual in Decadal Biochar-Amended Soil

Soil organic carbon (SOC) is pivotal for both agricultural activities and climate change mitigation, and biochar stands as a promising tool for bolstering SOC and curtailing soil carbon dioxide (CO2) emissions. However, the involvement of biochar in SOC dynamics and the underlying interactions among biochar, soil microbes, iron minerals, and fresh organic matter (FOM, such as plant debris) remain largely unknown, especially in agricultural soils after long-term biochar amendment. We therefore introduced FOM to soils with and without a decade-long history of biochar amendment, performed soil microcosm incubations, and evaluated carbon and iron dynamics as well as microbial properties. Biochar amendment resulted in 2-fold SOC accrual over a decade and attenuated FOM-induced CO2 emissions by approximately 11% during a 56-day incubation through diverse pathways. Notably, biochar facilitated microbially driven iron reduction and subsequent Fenton-like reactions, potentially having enhanced microbial extracellular electron transfer and the carbon use efficiency in the long run. Throughout iron cycling processes, physical protection by minerals could contribute to both microbial carbon accumulation and plant debris preservation, alongside direct adsorption and occlusion of SOC by biochar particles. Furthermore, soil slurry experiments, with sterilization and ferrous iron stimulation controls, confirmed the role of microbes in hydroxyl radical generation and biotic carbon sequestration in biochar-amended soils. Overall, our study sheds light on the intricate biotic and abiotic mechanisms governing carbon dynamics in long-term biochar-amended upland soils.

Phosphorus Interactions with Iron in Undisturbed and Disturbed Arctic Tundra Ecosystems

Phosphorus (P) limitation often constrains biological processes in Arctic tundra ecosystems. Although adsorption to soil minerals may limit P bioavailability and export from soils into aquatic systems, the contribution of mineral phases to P retention in Arctic tundra is poorly understood. Our objective was to use X-ray absorption spectroscopy to characterize P speciation and associations with soil minerals along hillslope toposequences and in undisturbed and disturbed low-lying wet sedge tundra on the North Slope, AK. Biogenic mats comprised of short-range ordered iron (Fe) oxyhydroxides were prevalent in undisturbed wet sedge meadows. Upland soils and pond sediments impacted by gravel mining or thermokarst lacked biogenic Fe mats and were comparatively iron poor. Phosphorus was primarily contained in organic compounds in hillslope soils but associated with Fe(III) oxyhydroxides in undisturbed wet sedge meadows and calcium (Ca) in disturbed pond sediments. We infer that phosphate mobilized through organic decomposition binds to Fe(III) oxyhydroxides in wet sedge, but these associations are disrupted by physical disturbance that removes Fe mats. Increasing disturbances of the Arctic tundra may continue to alter the mineralogical composition of soils at terrestrial-aquatic interfaces and binding mechanisms that could inhibit or promote transport of bioavailable P from soils to aquatic ecosystems.

Saltwater intrusion increases phosphorus abundance and alters availability in coastal soils with implications for future sea level rise

Sea level rise (SLR) promotes saltwater intrusion (SWI) into coastal soils globally at an increasing rate, impacting phosphorus (P) dynamics and adjacent water quality. However, how SWI influences P molecular speciation and availability in coastal soils remains poorly understood. By using a space-for-time substitution strategy, we evaluated the SWI impacts on P transformation along a SWI gradient at the Rehoboth Inland Bay, which consists of five sampling locations along a transect representing different SWI degrees. Soils were analyzed at the macro- and micro-scale using X-ray absorption near edge spectroscopy (XANES) and the modified Hedley fractionation. With increasing distance from the Bay, soil salinity (29.3-0.07 mmhos cm-1), the proportion of Fe3+ to total Fe, and P concentrations decreased. The fractionation showed that recalcitrant P was dominant (86.9-89.5% of total P). With increasing SWI, labile P increased gradually, reached a plateau, and then decreased sharply. Bulk XANES spectroscopy showed that soil P was likely dominated by iron and aluminum-associated P (Fe/Al-P), regardless of the SWI degree. Hence, with increasing SWI, P increasingly accumulated in a recalcitrant pool, mainly as Fe/Al-P. μ-XANES spectroscopy revealed that calcium-associated P (Ca-P) existed in P-rich spots of the greatest SWI soil while Al-P occurred in P-rich spots of the low SWI soil, consistent with the greater HCl-P (presumably Ca-P) in the former soil. Overall, results demonstrate that SWI impacts P availability and environmental risk in coastal soils depending on the degree of SWI. These findings have important implications for understanding soil P cycling and availability in SLR-impacted coastal areas.

Insights into the Crystallinity-Dependent Photochemical Productions of Reactive Oxygen Species from Iron Minerals

Iron minerals are widespread in earth's surface water and soil. Recent studies have revealed that under sunlight irradiation, iron minerals are photoactive on producing reactive oxygen species (ROS), a group of key species in regulating elemental cycling, microbe inactivation, and pollutant degradation. In nature, iron minerals exhibit varying crystallinity under different hydrogeological conditions. While crystallinity is a known key parameter determining the overall activity of iron minerals, the impact of iron mineral crystallinity on photochemical ROS production remains unknown. Here, we assessed the photochemical ROS production from ferrihydrites with different degrees of crystallinity. All examined ferrihydrites demonstrated photoactivity under irradiation, resulting in the generation of hydrogen peroxide (H2O2) and hydroxyl radical (•OH). The photochemical ROS production from ferrihydrites increased with decreasing ferrihydrite crystallinity. The crystallinity-dependent photochemical •OH production was primarily attributed to conduction band reduction reactions, with the reduction of O2 by conduction band electrons being the rate-limiting key process. Conversely, the crystallinity of iron minerals had a negligible influence on photon-to-electron conversion efficiency or surface Fenton-like activity. The difference in ROS productions led to a discrepant degradation efficiency of organic pollutants on iron mineral surfaces. Our study provides valuable insights into the crystallinity-dependent ROS productions from iron minerals in natural systems, emphasizing the significance of iron mineral photochemistry in natural sites with abundant lower-crystallinity iron minerals such as wetland water and surface soils.

Trade-off between Pore-Throat Structure and Mineral Composition in Modulating the Stability of Soil Organic Carbon

The preservation of soil organic carbon (OC) is an effective way to decelerate the emission of CO2 emission. However, the coregulation of pore structure and mineral composition in OC stabilization remains elusive. We employed the in situ nondestructive oxidation of OC by low-temperature ashing (LTA) combined with near edge X-ray absorption fine structure (NEXAFS), high-resolution microtomography (μ-CT), field emission electron probe microanalysis (FE-EPMA) with C-free embedding, and novel Cosine similarity measurement to investigate the C retention in different aggregate fractions of contrasting soils. Pore structure and minerals contributed equally (ca. 50%) to OC accumulation in macroaggregates, while chemical protection played a leading role in C retention with 53.4%-59.2% of residual C associated with minerals in microaggregates. Phyllosilicates were discovered to be more prominent than Fe (hydr)oxides in C stabilization. The proportion of phyllosilicates-associated C (52.0%-61.9%) was higher than that bound with Fe (hydr)oxides (45.6%-55.3%) in all aggregate fractions tested. This study disentangled quantitatively for the first time a trade-off between physical and chemical protection of OC varying with aggregate size and the different contributions of minerals to OC preservation. Incorporating pore structure and mineral composition into C modeling would optimize the C models and improve the soil C content prediction.

Unveiling the unique role of iron in the metabolism of methanogens: A review

Methanogens are the main participants in the carbon cycle, catalyzing five methanogenic pathways. Methanogens utilize different iron-containing functional enzymes in different methanogenic processes. Iron is a vital element in methanogens, which can serve as a carrier or reactant in electron transfer. Therefore, iron plays an important role in the growth and metabolism of methanogens. In this paper, we cast light on the types and functions of iron-containing functional enzymes involved in different methanogenic pathways, and the roles iron play in energy/substance metabolism of methanogenesis. Furthermore, this review provides certain guiding significance for lowering CH4 emissions, boosting the carbon sink capacity of ecosystems and promoting green and low-carbon development in the future.

How does exotic Spartina alterniflora affect the contribution of iron-bound organic carbon to soil organic carbon in salt marshes?

Iron-bound organic carbon (OC-FeR) is important for the stability of soil organic carbon (SOC) in salt marshes, and the Spartina alterniflora invasion reshaped local salt marshes and changed the SOC pool. To evaluate the effects of S. alterniflora invasion on the contribution of OC-FeR to SOC, we determined the OC-FeR content and soil characteristics in the 0-50 cm soil profile along the vegetation sequence, including mudflats (MF), S. alterniflora marshes established in 2003 (SA03) and 1989 (SA89), the ecotone of S. alterniflora and Phragmites australis (SE), S. salsa marsh (SS), and P. australis marsh (PA). The SOC content was 6.55-17.5 mg g-1 in the S. alterniflora marshes. Reactive iron oxides (Fed, Feo, Fep) accumulated significantly in the S. alterniflora and P. australis salt marshes. PA and S. alterniflora marshes had higher DOC contents of 0.28-0.77 mg g-1. The OC-FeR content in the 0-50 cm soil profile in these ecosystems ranged from 0.3 to 3.29 mg g-1, with a contribution to the SOC content (fOC-FeR) of approximately 11 %, which was highest in SA03 (16.3 % ~ 18.8 %), followed by SA89, SE, and PA. In addition, the molar ratios of OC-FeR to Fed were <1, indicating that the iron oxides were associated with SOC through sorption more than coprecipitation. According to the structural equation model, SOC, DOC and iron oxides were the direct driving factors of OC-FeR formation, while the vegetation zone indirectly functioned by regulating organic C inputs, iron oxide formation, and pH. This study suggested that S. alterniflora invasion promotes iron-bound organic carbon accumulation by increasing organic C inputs and regulating iron oxide formation in salt marshes, but such promotion will degenerate with development duration.

Potential retention of dissolved organic matter by soil minerals during wetland water-table fluctuations

Wetlands export large amounts of dissolved organic carbon (DOC) downstream, which is sensitive to water-table fluctuations (WTFs). While numerous studies have shown that WTFs may decrease wetland DOC via enhancing DOC biodegradation, an alternative pathway, i.e., retention of dissolved organic matter (DOM) by soil minerals, remains under-investigated. Here, we conducted a water-table manipulation experiment on intact soil columns collected from three wetlands with varying contents of reactive metals and clay to examine the potential retention of DOM by soil minerals during WTFs. Using batch sorption experiments and Fourier transform ion cyclotron resonance mass spectrometry, we showed that mineral (bentonite) sorption mainly retained lignin-, aromatic- and humic-like compounds (i.e., adsorbable compounds), in contrast to the preferential removal of protein- and carbohydrate-like compounds during biodegradation. Seven cycles of WTFs significantly decreased the intensity of adsorbable compounds in DOM (by 50 ± 21% based on fluorescence spectroscopy) and DOC adsorbability (by 2-20% and 1.9-12.7 mg L-1 based on batch sorption experiment), to a comparable extent compared with biodegradable compounds (by 11-32% and 1.6-15.2 mg L-1). Furthermore, oxidation of soil ferrous iron [Fe(II)] exerted a major control on the magnitude of potential DOM retention by minerals, while WTFs increased mineral-bound lignin phenols in the Zoige soil with the highest content of lignin phenols and Fe(II). Collectively, these results suggest that DOM retention by minerals likely played an important role in DOC decrease during WTFs, especially in soils with high contents of oxidizable Fe. Our findings support the 'iron gate' mechanism of soil carbon protection by newly-formed Fe (hydr)oxides during water-table decline, and highlight an underappreciated process (mineral-DOM interaction) leading to contrasting fate (i.e., preservation) of DOC in wetlands compared to biodegradation. Mineral retention of wetland DOC hence deserves more attention under changing climate and human activities.

Speciation and Possible Origins of Organosulfur Compounds in Rice Paddy Soils Affected by Acid Mine Drainage

Although sulfur cycling in acid mine drainage (AMD)-contaminated rice paddy soils is critical to understanding and mitigating the environmental consequences of AMD, potential sources and transformations of organosulfur compounds in such soils are poorly understood. We used sulfur K-edge X-ray absorption near edge structure (XANES) spectroscopy to quantify organosulfur compounds in paddy soils from five AMD-contaminated sites and one AMD-uncontaminated reference site near the Dabaoshan sulfide mining area in South China. We also determined the sulfur stable isotope compositions of water-soluble sulfate (δ34SWS), adsorbed sulfate (δ34SAS), fulvic acid sulfur (δ34SFAS), and humic acid sulfur (δ34SHAS) in these samples. Organosulfate was the dominant functional group in humic acid sulfur (HAS) in both AMD-contaminated (46%) and AMD-uncontaminated paddy soils (42%). Thiol/organic monosulfide contributed a significantly lower proportion of HAS in AMD-contaminated paddy soils (8%) compared to that in AMD-uncontaminated paddy soils (21%). Within contaminated soils, the concentration of thiol/organic monosulfide was positively correlated with cation exchange capacity (CEC), moisture content (MC), and total Fe (TFe). δ34SFAS ranged from -6.3 to 2.7‰, similar to δ34SWS (-6.9 to 8.9‰), indicating that fulvic acid sulfur (FAS) was mainly derived from biogenic S-bearing organic compounds produced by assimilatory sulfate reduction. δ34SHAS (-11.0 to -1.6‰) were more negative compared to δ34SWS, indicating that dissimilatory sulfate reduction and abiotic sulfurization of organic matter were the main processes in the formation of HAS.

Warming Leads to Changes in Soil Organic Carbon Molecules Due to Decreased Mineral Protection

Climate change affects the content and composition of soil organic carbon (SOC). However, warming-induced changes in the SOC compounds remain unknown. Using nuclear magnetic resonance spectroscopy, molecular mixing models, and Fourier transform ion cyclotron resonance mass spectrometry, we analyzed the variations and relationships in molecular compounds in Mollisol with 10-56 g C kg-1 soil-1 by translocating soils under six climate regimes. We found that increased temperature and precipitation were negatively correlated with carbohydrate versus lipid and lignin versus protein. The former was consistent across soils with varying SOC contents, but the latter decreased as the SOC content increased. The carbohydrate-lipid correlations were related to dithionite-citrate-extractable Fe, while the lignin-protein correlations were linked to changes in moisture and pyrophosphate-extractable Fe/Al. Our findings indicate that the reduction in the mineral protection of SOC is associated with molecular alterations in SOC under warming conditions.

Partitioning and Mobility of Chromium in Iron-Rich Laterites from an Optimized Sequential Extraction Procedure

Chromium (Cr) leached from iron (Fe) (oxyhydr)oxide-rich tropical laterites can substantially impact downstream groundwater, ecosystems, and human health. However, its partitioning into mineral hosts, its binding, oxidation state, and potential release are poorly defined. This is in part due to the current lack of well-designed and validated Cr-specific sequential extraction procedures (SEPs) for laterites. To fill this gap, we have (i) first optimized a Cr SEP for Fe (oxyhydr)oxide-rich laterites using synthetic and natural Cr-bearing minerals and laterite references, (ii) used a complementary suite of techniques and critically evaluated existing non-laterite and non-Cr-optimized SEPs, compared to our optimized SEP, and (iii) confirmed the efficiency of our new SEP through analyses of laterites from the Philippines. Our results show that other SEPs inadequately leach Cr host phases and underestimate the Cr fractions. Our SEP recovered up to seven times higher Cr contents because it (a) more efficiently dissolves metal-substituted Fe phases, (b) quantitatively extracts adsorbed Cr, and (c) prevents overestimation of organic Cr in laterites. With this new SEP, we can estimate the mineral-specific Cr fractionation in Fe-rich tropical soils more quantitatively and thus improve our knowledge of the potential environmental impacts of Cr from lateritic areas.

Biotic and Abiotic Regulations of Carbon Fixation into Lacustrine Sediments with Different Nutrient Levels

Lake sediments play a critical role in organic carbon (OC) conservation. However, the biogeochemical processes of the C cycle in lake ecosystems remain limitedly understood. In this study, Fe fractions and OC fractions, including total OC (TOC) and OC associated with iron oxides (TOCFeO), were measured for sediments from a eutrophic lake in China. The abundance and composition of bacterial communities encoding genes cbbL and cbbM were obtained by using high-throughput sequencing. We found that autochthonous algae with a low C/N ratio together with δ13C values predominantly contributed to the OC burial in sediments rather than terrigenous input. TOCFeO served as an important C sink deposited in the sediments. A significantly positive correlation (r = 0.92, p < 0.001) suggested the remarkable regulation of complexed FeO (Fep) on fixed TOC fractions, and the Fe redox shift triggered the loss of deposited OC. It should be noted that a significant correlation was not found between the absolute abundance of C-associating genera and TOC, as well as TOCFeO, and overlying water. Some rare genera, including Acidovora and Thiobacillus, served as keystone species and had a higher connected degree than the genera with high absolute abundance. These investigations synthetically concluded that the absolute abundance of functional genes did not dominate CO2 fixation into the sediments via photosynthesis catalyzed by the C-associating RuBisCO enzyme. That is, rare genera, together with high-abundance genera, control the C association and fixation in the sediments.

New vegetable field converted from rice paddy increases net economic benefits at the expense of enhanced carbon and nitrogen footprints

China accounts for around 50 % of the global vegetable harvested area which is expected to increase continuously. Large cropland areas, including rice paddy, have been converted into vegetable cultivation to feed an increasingly affluent population and increase farmers' incomes. However, little information is available on the balance between economic benefits and environmental impacts upon rice paddy conversion into vegetable fields, especially during the initial conversion period. Herein, the life cycle assessment approach was applied to compare the differences in agricultural input costs, yield incomes, net economic benefits (NEB), carbon (C) and nitrogen (N) footprints and net ecosystem economic benefits (NEEB) between the double rice paddy (Rice) and newly vegetable field (Veg) converted from Rice based on a four-year field experiment. Results showed that yield incomes from Veg increased by 96-135 %, outweighing the increased agricultural input costs due to higher inputs of labor and pesticide, thus significantly increasing NEB by 80-137 %, as compared to Rice. Rice conversion into Veg largely increased C footprints by 2.3-10 folds and N footprints by 1.1-2.6 folds, consequently increasing the environmental damage costs (EDC) by 2.2 folds on average. The magnitudes of increases in C and N footprints and EDC due to conversion strongly declined over time. The NEEB, the trade-offs between NEB and EDC, decreased by 18 % in the first year, while increasing by 63 % in the second year and further to 135 % in the fourth year upon conversion. These results suggested that rice paddy conversion into vegetable cultivation could increase the NEB at the expense of enhanced EDC, particular during the initial conversion years. Overall, these findings highlight the importance of introducing interventions to mitigate C and N footprints from newly converted vegetable field, so as to maximize NEEB and realize the green and sustainable vegetable production.

Carbon Fate, Iron Dissolution, and Molecular Characterization of Dissolved Organic Matter in Thawed Yedoma Permafrost under Varying Redox Conditions

Permafrost soils store ∼50% of terrestrial C, with Yedoma permafrost containing ∼25% of the total C. Permafrost is undergoing degradation due to thawing, with potentially hazardous effects on landscape stability and water resources. Complicating ongoing efforts to project the ultimate fate of deep permafrost C is the poorly constrained role of the redox environment, Fe-minerals, and its redox-active phases, which may modulate organic C-abundance, composition, and reactivity through complexation and catalytic processes. We characterized C fate, Fe fractions, and dissolved organic matter (DOM) isolates from permafrost-thaw under varying redox conditions. Under anoxic incubation conditions, 33% of the initial C was lost as gaseous species within 21 days, while under oxic conditions, 58% of C was lost. Under anoxic incubation, 42% of the total initial C was preserved in a dissolved fraction. Lignin-like compounds dominated permafrost-thaw, followed by lipid- and protein-like compounds. However, under anoxic incubation conditions, there was accumulation of lipid-like compounds and reduction in the nominal oxidation state of C over time, regardless of the compound classes. DOM dynamics may be affected by microbial activity and abiotic processes mediated by Fe-minerals related to selective DOM fractionation and/or its oxidation. Chemodiversity DOM signatures could serve as valuable proxies to track redox conditions with permafrost-thaw.

Mineral-mediated stability of organic carbon in soil and relevant interaction mechanisms

Soil, the largest terrestrial carbon reservoir, is central to climate change and relevant feedback to environmental health. Minerals are the essential components that contribute to over 60% of soil carbon storage. However, how the interactions between minerals and organic carbon shape the carbon transformation and stability remains poorly understood. Herein, we critically review the primary interactions between organic carbon and soil minerals and the relevant mechanisms, including sorption, redox reaction, co-precipitation, dissolution, polymerization, and catalytic reaction. These interactions, highly complex with the combination of multiple processes, greatly affect the stability of organic carbon through the following processes: (1) formation or deconstruction of the mineral-organic carbon association; (2) oxidative transformation of the organic carbon with minerals; (3) catalytic polymerization of organic carbon with minerals; and (4) varying association stability of organic carbon according to the mineral transformation. Several pieces of evidence related to the carbon turnover and stability during the interaction with soil minerals in the real eco-environment are then demonstrated. We also highlight the current research gaps and outline research priorities, which may map future directions for a deeper mechanisms-based understanding of the soil carbon storage capacity considering its interactions with minerals.

Phototrophic Fe(II) oxidation by Rhodopseudomonas palustris TIE-1 in organic and Fe(II)-rich conditions

Rhodopseudomonas palustris TIE-1 grows photoautotrophically with Fe(II) as an electron donor and photoheterotrophically with a variety of organic substrates. However, it is unclear whether R. palustris TIE-1 conducts Fe(II) oxidation in conditions where organic substrates and Fe(II) are available simultaneously. In addition, the effect of organic co-substrates on Fe(II) oxidation rates or the identity of Fe(III) minerals formed is unknown. We incubated R. palustris TIE-1 with 2 mM Fe(II), amended with 0.6 mM organic co-substrate, and in the presence/absence of CO2 . We found that in the absence of CO2 , only the organic co-substrates acetate, lactate and pyruvate, but not Fe(II), were consumed. When CO2 was present, Fe(II) and all organic substrates were consumed. Acetate, butyrate and pyruvate were consumed before Fe(II) oxidation commenced, whereas lactate and glucose were consumed at the same time as Fe(II) oxidation proceeded. Lactate, pyruvate and glucose increased the Fe(II) oxidation rate significantly (by up to threefold in the case of lactate). 57 Fe Mössbauer spectroscopy revealed that short-range ordered Fe(III) oxyhydroxides were formed under all conditions. This study demonstrates phototrophic Fe(II) oxidation proceeds even in the presence of organic compounds, and that the simultaneous oxidation of organic substrates can stimulate Fe(II) oxidation.

Composition of DOM along the depth gradients in the paddy field treated with crop straw for 10 years

Crop straw return is a widely used agricultural management practice. The addition of crop straw significantly alters the pool of dissolved organic matter (DOM) in agricultural soils and plays a pivotal role in the global carbon (C) cycle, which is sensitive to climate change. The DOM concentration and composition at different soil depths could regulate the turnover and further storage of organic C in terrestrial systems. However, it is still unclear how crop straw return influences the change in DOM composition in rice paddy soils. Therefore, a field experiment was conducted in which paddy soil was amended with crop straw for 10 years. Two crop straw-addition treatments [NPK with 50% crop straw (NPK+1/2S) and NPK with 100% crop straw (NPK + S)], a conventional mineral fertilization control (NPK) and a non-fertilized control were included. Topsoil (0-20 cm) and subsoil (20-40 cm) samples were collected to investigate the soil DOM concentration and compositional structure of the profile. Soil nutrients, iron (Fe) fraction, microbial biomass carbon (MBC), and concentration and optical properties (UV-Vis and fluorescence spectra) of soil DOM were determined. Here, we found that the DOM in the topsoil was more humified than that in the subsoil. The addition of crop straw further decreased the humidification degree of DOM in the subsoil. In crop straw-amended topsoil, microbial decomposition controlled the composition of DOM and induced the formation of aromatic DOM. In the straw-treated subsoil, selective adsorption by poorly crystalline Fe(oxyhydr)oxides and microbial decomposition controlled the composition of DOM. In particular, the formation of protein-like compounds could have played a significant role in the microbial degradation of DOM in the subsoil. Overall, this work conducted a case study within long-term agricultural management to understand the changes in DOM composition along the soil profile, which would be further helpful for evaluating C cycling in agricultural ecosystems.

Seasonal controls on stream metal(loid) signatures in mountainous discontinuous permafrost

We assess physical and chemical processes driving seasonal fluctuations in dissolved (<0.45 μm) trace metal(loid) concentrations in subarctic streams in discontinuous permafrost. Our analysis integrates multiple years of stream hydrometric and geochemical data with geochemical analyses of bedrock, permafrost, and active-layer samples. Three principal flow regimes govern stream hydrology: winter baseflow, spring freshet, and summer high flows. Metal(oid) concentrations in streams respond seasonally to these flow regimes. Baseflows are dominated by discharge of circumneutral-pH groundwater draining fractured bedrock. This discharge acts as a source of metals found as oxyanions or neutrally charged complexes, such as uranium and molybdenum. High stream flows are associated with peak concentrations of aluminium, cobalt, copper, iron, nickel, titanium, and vanadium. Concentrations of the metal cations aluminium, cobalt, copper, nickel, and titanium peak during freshet, when infiltration of snowmelt through organic-rich and moderately acidic soils favors their complexation with dissolved organic carbon. Concentrations of vanadium peak during summer high flows, likely reflecting flow through mineral soils in the active layer and involving reductive dissolution of iron(III)-(oxyhydr)oxides. The seasonal variation of arsenic concentrations is complex; at the majority of catchments it is sourced from shallow flowpaths in the active layer, but it can also be locally associated with discharge of deeper bedrock groundwater, which is spatially constrained by the presence of permafrost. Based on our analysis, we present a conceptual model that describes the flowpaths and processes governing metal(loid) release to streams in discontinuous permafrost. This model provides a framework upon which we consider changes in metal(loid) export into water resources in the context of thawing permafrost.

Wetland soil organic carbon balance is reversed by old carbon and iron oxide additions

Iron (Fe) oxides can stabilize organic carbon (OC) through adsorption and co-precipitation, while microbial Fe reduction can disrupt Fe-bound OC (Fe-OC) and further increase OC mineralization. The net effects of OC preservation and mineralization mediated by Fe oxides are still unclear, especially for old carbon (formed from plant litters over millions of years) and crystalline Fe oxides. Accelerating the recovery of wetland carbon sinks is critical for mitigating climate change and achieving carbon neutrality. Quantifying the net effect of Fe-mediated OC mineralization and preservation is vital for understanding the role of crystalline Fe oxides in carbon cycling and promoting the recovery of soil carbon sinks. Here, we explored the OC balances mediated by hematite (Hem) and lignite addition (Lig) to freshwater wetland (FW, rich in C and Fe) and saline-alkaline wetland (SW, poor in C and Fe) soil slurries, incubated under anaerobic conditions. Results showed that Lig caused net OC accumulation (FW: 5.9 ± 3.6 mg g-1; SW: 8.3 ± 3.2 mg g-1), while Hem caused dramatic OC loss, particularly in the FW soils. Hem inhibited microbial Fe(III) reduction by decreasing the relative abundance of Fe respiration reducers, while substantially enhancing OC mineralization through the shift in the microbial community structure of FW soils. Lig resulted in carbon emission, but its contribution to preservation by the formation of Fe-OC was far higher than that which caused OC loss. We concluded that crystalline Fe oxide addition solely favored the increase of OC mineralization by adjusting the microbial community structure, while old carbon enriched with an aromatic and alkyl promoted Fe-OC formation and further increased OC persistence. Our findings could be employed for wetland restoration, particularly for the recovery of soil carbon sinks.

Mechanisms and implications of bacterial-fungal competition for soil resources

Elucidating complex interactions between bacteria and fungi that determine microbial community structure, composition, and functions in soil, as well as regulate carbon (C) and nutrient fluxes, is crucial to understand biogeochemical cycles. Among the various interactions, competition for resources is the main factor determining the adaptation and niche differentiation between these two big microbial groups in soil. This is because C and energy limitations for microbial growth are a rule rather than an exception. Here, we review the C and energy demands of bacteria and fungi-the two major kingdoms in soil-the mechanisms of their competition for these and other resources, leading to niche differentiation, and the global change impacts on this competition. The normalized microbial utilization preference showed that bacteria are 1.4-5 times more efficient in the uptake of simple organic compounds as substrates, whereas fungi are 1.1-4.1 times more effective in utilizing complex compounds. Accordingly, bacteria strongly outcompete fungi for simple substrates, while fungi take advantage of complex compounds. Bacteria also compete with fungi for the products released during the degradation of complex substrates. Based on these specifics, we differentiated spatial, temporal, and chemical niches for these two groups in soil. The competition will increase under the main five global changes including elevated CO2, N deposition, soil acidification, global warming, and drought. Elevated CO2, N deposition, and warming increase bacterial dominance, whereas soil acidification and drought increase fungal competitiveness.

Soil conditioners promote the formation of Fe-bound organic carbon and its stability

The close association of soil organic carbon (SOC) with Fe oxides is an important stabilization mechanism for soil organic matter (SOM) against biodegradation. Soil conditioners are of great importance in improving soil quality and soil health. Yet it remains unclear how different conditioners would affect the fractionation of SOC, particularly the Fe-bound organic carbon (Fe-OC). Field-based experiments were conducted in farmland to explore the fractionation of organic carbon (OC) and Fe oxides under the effects of three different soil conditioners (mineral, organic, and microbial conditioners). The results showed that all soil conditioners increased the total OC and Fe-OC contents, with the contribution of Fe-OC to total OC increasing from 1.57% to 2.99%. The low OC/Fe molar ratio indicated that surface adsorption played a crucial role in soil Fe-OC accumulation. Nuclear magnetic resonance (NMR) results suggested that soil conditioner altered the composition of SOM, accelerating O-alkyl C degradation and increasing recalcitrant alkyl C and aromatic C sequestration. Scanning electron microscopy with energy dispersive spectroscopy (SEM-EDS) analysis indicated that all conditioners promoted the association of OC and Fe oxides. Furthermore, comprehensive analysis of 13C isotope and synchrotron radiation-based Fourier transform infrared (SR-FTIR) spectroscopy showed that the mineral conditioner enhanced the association of microbial-derived OC and Fe oxides, whereas the organic conditioner increased the association of plant-derived OC with Fe oxides. These findings provide important insights into the potential mechanisms through which soil conditioners regulate the stability of OC and guide agricultural management.

Bacteria-Virus Interactions Are More Crucial in Soil Organic Carbon Storage than Iron Protection in Biochar-Amended Paddy Soils

Iron oxides supposedly provide physicochemical protection for soil organic carbon (SOC) under anoxic conditions. Likewise, biochar can modulate the composition of soil microbial communities. However, how Fe oxides and microbial communities influence the fate of SOC with biochar amendment remains unresolved, especially the effect of the bacteria-virus interaction on SOC dynamics. Here, we performed a four-month pot experiment using rice seedlings with a biochar amendment under waterlogged conditions. Then, soil aggregate sizes were examined to explore the factors influencing the SOC patterns and the underlying mechanisms. We found that biochar altered soil enzyme activities, especially in macroaggregates. Fe oxides and necromass exhibited significant negative relationships with SOC. Bacterial communities were notably associated with viral communities. Here, the keystone ecological cluster (module 1) and keystone taxa in the bacteria-virus network showed significant negative correlations with SOC. However, Fe oxides exhibited substantial positive relationships with module 1. In contrast to the prevailing view, the SOC increase was not primarily driven by Fe oxides but strongly influenced by bacteria-virus interactions and keystone taxa. These findings indicate that biochar governs microbial-mediated SOC accumulation in paddy soil and ascertains the role of viruses in regulating the bacterial community, thus predicting SOC stock.

Effect of ferrous ions combined with zeolite on humification degree during food waste composting

The research aims to clarify role of ferrous sulfate (FeSO4) combined with zeolite (Z) on humification degree based on investigation of concentration and structural stability of humic acid (HA) during food waste composting. Four treatments were set up, namely CK (control), Fe (5 %), Z (5 %) and Fe + Z (2.5 %+2.5 %). Results demonstrated that concentration and polymerization degree of HA were 53.4 % and 97.3 % higher in composting amended with Fe + Z than in the control, respectively. Meanwhile, formation of aromatic functional groups and recalcitrant fluorescent components (HAC3) was significantly promoted, indicating that Fe + Z treatment enhanced HA structure stability. The bacterial networks became tighter, and the proportion of core bacteria in dominant modules increased at Fe + Z treatment. Additionally, key factors affecting HAC3 and product quality were identified by structural equation models, which verified potential mechanism of humification enhancement. Overall, this study provided theoretical support for improving humification degree and product quality.

Improved carbon sequestration by utilization of ferrous ions during different organic wastes composting

The humic acid (HA) possesses a more recalcitrant structure, making it crucial carbon components that improve carbon sequestration. Moreover, ferrous ions could improve microbial activity and enhance compost humification, and their oxidation into iron oxides could adsorb carbon components for sequestration. Based on the advantages of low cost and easy availability of ferrous sulfate (FeSO4), this study investigated the effect of FeSO4 on carbon sequestration during composting. Chicken manure (CM) and food waste (FW) composting were carried out in four treatments, namely control (CM, FW) and 5% (w/w) FeSO4 treated groups (CM+, FW+). Results indicated that FeSO4 increased HA content, improved organic carbon stability. Carbon loss for CM, CM+, FW and FW + treatments were 48.5%, 46.2%, 45.0%, and 40.3%, respectively. Meanwhile, FeSO4 enhanced the function of bacterial taxa involved in HA synthesis in CM + treatment, and improved the number of core bacteria significantly associated with formation of HA and iron oxide. SEM analysis verified that role of FeSO4 was significant in promoting HA synthesis during CM + composting, while it was remarkably in enhancing HA sequestration during FW + composting. This article provided fundamental theoretical backing for enhancing HA production and improving carbon sequestration during different materials composting.