Global analysis of ocean phytoplankton nutrient limitation reveals high prevalence of co-limitation

Sediment implication in shift in nutrient limitation and impact on purification capacity: Application on a common Atlantic east coast pond

Salt marshes are widely recognized as regulation areas of nutrient flows to the ocean. However, poor knowledge of nutrient dynamics in these environments counteracts the understanding of nutrient regulation within the land-sea continuum, previous works mainly focusing on the water compartment. To overcome this gap, an experimental pond was monthly (open system) and weekly (closed system) monitored between February and October 2021. Bio(geo)chemical parameters (in water and sediment) and nutrient fluxes at the sediment-water interface (SWI) were relevantly explored to highlight the coupling between the benthic and pelagic compartments. A significant shift from P limitation (February-June period) to N limitation (July-October period) was observed and attributed to the phosphate mobilization (named soluble reactive phosphorus, SRP) processes in the sediment and its effluxes toward the water column. This SRP mobilization was strongly linked to the respiration of iron oxides for mineralization of organic matter (OM) and anammox processes. Surprising high carbon production in September (>1200 mgC m-3 d-1) in a low nutrient concentration range indicated significant regenerated N production and potentially new P production. Monitoring in enclosed system indicated a 3-week water retention time for a maximum nutrient removal and minimal impact for water export to the coastal waters. In non-bloom period, sediment SRP efflux from the sediment could contribute up to 40 % of SRP increase in the water column in September and to 60 % of the P-production demand in October. This work highlighted the importance of sediment for water nutrient re-supply and the temporality of water retention time in pond system to optimize purification effect and limit risks of eutrophication in coastal waters. While the eutrophication potential associated with nitrogen seemed to be reduced in such pond, that of phosphorus needs to be more considered.

Similar Oxygen Sensitivities of Different Steps of Denitrification in Estuarine Waters

Hypoxia is observed and projected to expand in many aquatic environments, largely due to excess anthropogenic nutrient inputs and climate change, thus influencing biogeochemical processes. Denitrification, generally an anaerobic process, removes bioavailable nitrogen and produces nitrous oxide (N2O). However, limited observations of the effect of oxygen on denitrification restrict our ability to estimate changes in the amount of bioavailable nitrogen and N2O emissions under anthropogenic perturbations and climate change. Here, we show that all denitrification steps increased, while the N2O production yield from denitrification decreased with decreasing oxygen in Chesapeake Bay - the largest estuary in the United States. The different steps of denitrification responded similarly to oxygen changes in Chesapeake Bay, unlike open ocean oxygen minimum zones, with implications for the accumulation or depletion of denitrification intermediates such as nitrite and N2O. Our observations also suggest that current model parametrizations of denitrification in Chesapeake Bay likely overestimate denitrification and nitrogen removal in the presence of oxygen, which would bias the evaluation of nutrient cycling, ecosystem productivity, and the extent of hypoxia. Overall, our newly derived oxygen sensitivities of denitrification could be used to improve model parametrizations of denitrification and constrain the nitrogen budget and N2O emissions in estuarine and coastal environments experiencing hypoxia.

Simultaneous acclimation to nitrogen and iron scarcity in open ocean cyanobacteria revealed by sparse tensor decomposition of metatranscriptomes

Microbes respond to changes in their environment by adapting their physiology through coordinated adjustments to the expression levels of functionally related genes. To detect these shifts in situ, we developed a sparse tensor decomposition method that derives gene co-expression patterns from inherently complex whole community RNA sequencing data. Application of the method to metatranscriptomes of the abundant marine cyanobacteria Prochlorococcus and Synechococcus identified responses to scarcity of two essential nutrients, nitrogen and iron, including increased transporter expression, restructured photosynthesis and carbon metabolism, and mitigation of oxidative stress. Further, expression profiles of the identified gene clusters suggest that both cyanobacteria populations experience simultaneous nitrogen and iron stresses in a transition zone between North Pacific oceanic gyres. The results demonstrate the power of our approach to infer organism responses to environmental pressures, hypothesize functions of uncharacterized genes, and extrapolate ramifications for biogeochemical cycles in a changing ecosystem.

The microbial phosphorus cycle in aquatic ecosystems

Phosphorus is an essential element for life, and phosphorus cycling is crucial to planetary habitability. In aquatic environments, microorganisms are a major component of phosphorus cycling and rapidly transform the diverse chemical forms of phosphorus through various uptake, assimilation and release pathways. Recent discoveries have revealed a more dynamic and complex aquatic microbial phosphorus cycle than previously understood. Some microorganisms have been shown to use and produce new phosphorus compounds, including those in reduced forms. New findings have also raised numerous unanswered questions that warrant further investigation. There is an expanding influence of human activity on aquatic ecosystems. Advancements in understanding the phosphorus biogeochemistry of evolving aquatic environments offer a unique opportunity to comprehend, anticipate and mitigate the effect of human activities. In this Review, I discuss the wealth of new aquatic phosphorus cycle research, spanning disciplines from omics and physiology to global biogeochemical modelling, with a focus on the current comprehension of how aquatic microorganisms sense, transport, assimilate, store, produce and release phosphorus. Of note, I delve into cellular phosphorus allocation, an underexplored topic with wide-ranging implications for energy and element flux in aquatic ecosystems.

Comparative Assessment of the Impacts of Wildland-Urban Interface Fire Ash on Growth of the Diatom Thalassiosira weissflogii

Fires at the wildland-urban interface (WUI) result in the release of ash into the atmosphere that can be transported for long distances and deposited on land and in oceans. Wildfire ash has the potential to increase phytoplankton biomass in the open ocean by providing both major nutrients and trace metals. However, fires that originate at the WUI contain potentially toxic concentrations of metals such as Ti, Cr, Cu, Pb, and Zn, especially in coastal oceans close to WUI fires, where ash deposition rates are high. Here, we investigated the impact of fire ash from different sources originating from vegetation, structures, and vehicles on growth of the diatom Thalassiosira weissflogii (T. weissflogii). The diatom was exposed to ash suspensions containing equimolar concentrations of 10 and 50 µM Fe. The concentration of potentially toxic metals (e.g., Ti, Cu, and Zn) in the exposure suspensions decreased following the order vehicle ash suspension > structural ash suspension > vegetation ash suspension. Growth rates (GR) of T. weissflogii were between 0.44 d-1 and 0.52 d-1 in the controls, and varied with ash types, following the order vegetation (GR = 0.40 d-1 to 0.48 d-1) > vehicle (GR = 0.06 d-1 to 0.46 d-1) > structure (GR = 0.02 d-1 to 0.31 d-1) ash. Two ash samples (A 131 and A136) completely inhibited the growth of T. weissflogii, possibly due to high Ti, Cu, and Zn concentrations in the form of (nano)particles. Overall, this study showed that structural and vehicle ash, with high concentrations of potentially toxic metals, significantly suppress the growth of T. weissflogii, whereas vegetation ash with high concentrations of Fe and Mn but low concentrations of potentially toxic metals had no significant beneficial or suppressive effect. High concentrations of the metals Ti, Cu, and Zn in the form of nano(particles) in structural and vehicle ash are possible sources of toxicity to diatom growth. This study provides valuable insights into the potential impacts of WUI fires on aquatic ecosystems and can inform management strategies aimed at reducing these impacts.

Nutrient limitation and seasonality associated with phytoplankton communities and cyanotoxin production in a large, hypereutrophic lake

Though freshwater harmful algal blooms have been described and studied for decades, several important dynamics remain uncertain, including the relationships among nutrient concentrations, phytoplankton growth, and cyanotoxin production. To identify when and where nutrients limit phytoplankton, cyanobacteria, and cyanotoxins, we conducted in situ bioassay studies. We added nitrogen (N), phosphorus (P), or N + P across various seasons in water collected from three locations across Utah Lake, one of the largest freshwater lakes in the western U.S. This shallow, hypereutrophic lake provides a powerful testbed for quantifying nutrient-growth-toxin interactions. We assessed a range of parameters over time, including photopigment concentrations, phytoplankton abundance (cell counts), cyanotoxins, and nutrient concentrations. Despite high background nutrient concentrations in lake water, phytoplankton abundance and composition were strongly affected by nutrient addition. Phosphorus limitation was more common in the spring, with N limitation and N + P limitation becoming more common in the fall. Nutrient additions were positively associated with cyanobacteria (Microcystis, Aphanocapsa, Dolichospermum, Merismopedia, Aphanizomenon spp.), eukaryotes (Aulacoseira, Desmodesmus spp.), and two taxonomical categories of phytoplankton (i.e., unicellular and colonial green algae). When detected, anatoxin-a was positively associated with Aphanizomenon and negatively associated with Microcystis spp. However, overall cyanotoxin concentrations were not associated with cyanobacterial cell density but varied seasonally. These findings highlight the importance of considering seasonal nutrient availability dynamics and provide insights into specific nutrient targets, species, and cyanotoxins that play a significant role in the health and management of similar eutrophic lake environments around the world.

Observed declines in upper ocean phosphate-to-nitrate availability

Climate warming is increasing ocean stratification, which in turn should decrease the nutrient flux to the upper ocean. This may slow marine primary productivity, causing cascading effects throughout food webs. However, observing changes in upper ocean nutrients is challenging because surface concentrations are often below detection limits. We show that the nutricline depth, where nutrient concentrations reach well-detected levels, is tied to productivity and upper ocean nutrient availability. Next, we quantify nutricline depths from a global database of observed vertical nitrate and phosphate profiles to assess contemporary trends in global nutrient availability (1972-2022). We find strong evidence that the P-nutricline (phosphacline) is mostly deepening, especially throughout the southern hemisphere, but the N-nutricline (nitracline) remains mostly stable. Earth System Model (ESM) simulations support the hypothesis that reduced iron stress and increased nitrogen fixation buffer the nitracline, but not phosphacline, against increasing stratification. These contemporary trends are expected to continue in the coming decades, leading to increasing phosphorus but not nitrogen stress for marine phytoplankton, with important ramifications for ocean biogeochemistry and food web dynamics.

Synechococsins: Lanthipeptides acting as defensive signals to disarm offensive competitors?

Synechococsins represent a diverse group of class II lanthipeptides from the prochlorosin family, produced by the marine picocyanobacterium Synechococcus. A single strain can produce multiple SyncA peptides through modification by SyncM, a bifunctional lanthipeptide synthetase. Despite the prevalence of these lanthipeptides in nature, their biological functions remain elusive, even for the most studied group, Prochlorococcus MIT9313. This study investigated the transcriptomic response of the marine SyncA-producing strain Synechococcus sp. RS9116 to the characterized and purified SyncA6 peptide from Synechococcus sp. MITS9509. Intriguingly, the analysis of gene expression revealed a strong down-regulation of genes that encode putative ribosomally produced antimicrobial peptides, such as coculture-responsive genes (CCRG-2) and microcin-C-like bacteriocins. This study suggests a potential biological role for synechococsins as interspecific gene modulators, improving the fitness of the producing strain in a competitive and resource-limited environment.

"Genome-based in silico assessment of biosynthetic gene clusters in Planctomycetota: Evidences of its wide divergent nature"

The biotechnological potential of Planctomycetota only recently started to be unveiled. 129 reference genomes and 5194 available genomes (4988 metagenome-assembled genomes (MAGs)) were analysed regarding the presence of Biosynthetic Gene Clusters (BGCs). By antiSMASH, 987 BGCs in the reference genomes and 22,841 BGCs in all the available genomes were detected. The classes Ca Uabimicrobiia, Ca Brocadiia and Planctomycetia had the higher number of BGC per genome, while Phycisphaerae had the lowest number. The most prevalent BGCs found in Planctomycetota reference genomes were terpenes, NRPS, type III PKS, type I PKS. As much as 88 % of the predicted regions had no similarity with known clusters in MIBiG database. This study strengthens the uniqueness of Planctomycetota for the isolation of new compounds and provide an overview of BGCs taxonomic distribution and of the type of predicted product. This outline allows the acceleration and focus of the research on drug discovery in Planctomycetota.

Beyond Meta-Omics: Functional Genomics in Future Marine Microbiome Research

When President Bill Clinton and Francis Collins, then the director of the National Human Genome Research Institute, celebrated the near completion of the human genome sequence at the White House in the summer of 2000, it is unlikely that they or anyone else could have predicted the blossoming of meta-omics in the following two decades and their applications in modern human microbiome and environmental microbiome research. This transformation was enabled by the development of high-throughput sequencing technologies and sophisticated computational biology tools and bioinformatics software packages. Today, environmental meta-omics has undoubtedly revolutionized our understanding of ocean ecosystems, providing the genetic blueprint of oceanic microscopic organisms. In this review, I discuss the importance of functional genomics in future marine microbiome research and advocate a position for a gene-centric, bottom-up approach in modern oceanography. I propose that a synthesis of multidimensional approaches is required for a better understanding of the true functionality of the marine microbiome.

Crossed wires: diatom phosphate sensing mechanisms coordinate nitrogen metabolism

Phytoplankton can encounter dynamic changes in their environment including fluctuating nutrient supply, and therefore require survival mechanisms to compete for such growth-limiting resources. Diatoms, single-celled eukaryotic microalgae, are typically first responders when crucial macronutrients phosphorus (P) and nitrogen (N) enter the marine environment and therefore must have tightly regulated nutrient sensory systems. While nutrient starvation responses have been described, comparatively little is known about diatom nutrient sensing mechanisms. We previously identified that the model diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana use calcium (Ca2+) ions as a rapid intracellular signaling response following phosphate resupply. This response is evident only in phosphate deplete conditions, suggesting that it is coordinated in P-starved cells. Rapid increases in N uptake and assimilation pathways observed following phosphate resupply, indicate tight interplay between P and N signaling. To regulate such downstream changes, Ca2+ ions must bind to Ca2+ sensors following phosphate induced Ca2+ signals, yet this molecular machinery is unknown. Here, we describe our findings in relation to known diatom P starvation signaling mechanisms and discuss their implications in the context of environmental macronutrient metadata and in light of recent developments in the field. We also consider the importance of studying phytoplankton nutrient signaling systems in the face of future ocean conditions.

Nitrogen use efficiency underlies cross-ecosystem variation in marine primary production

The supply of nitrogen (N) and the efficiency with which it is used by phytoplankton serve as two fundamental controls on the productivity of many marine ecosystems. Shifts in nitrogen use efficiency (NUE) can decouple primary production from N-supply but how NUE varies across systems is poorly known. Through a global synthesis of how total N (TN) is apportioned among phytoplankton, particulate, dissolved inorganic, and dissolved organic pools, we demonstrate that NUE underlies broad variations in primary production. Across coastal and open ocean systems, the biomass of autotrophs scales non-linearly with the size of the ecosystem N pool according to a simple equation (chla = 0.004*TN2.38) that captures 68% of the variance in chlorophyll-a (chla) concentration. Such variation in NUE does not arise from organism-level variation in N-use but reflects ecosystem-level shifts in N-distribution among phytoplankton and dissolved organic-N pools. Because these pools differ in their potential for N-retention, shifts in NUE provide a set of common feedback mechanisms that can act to regulate the long-term stock of N in the surface ocean. Cross-system patterns in NUE provide a set of common relationships for predicting how ocean productivity may respond to future perturbations in N-supply.

Nutrient colimitation is a quantitative, dynamic property of microbial populations

Resource availability dictates how fast and how much microbial populations grow. Quantifying the relationship between microbial growth and resource concentrations makes it possible to promote, inhibit, and predict microbial activity. Microbes require many resources, including macronutrients (e.g., carbon and nitrogen), micronutrients (e.g., metals), and complex nutrients like vitamins and amino acids. When multiple resources are scarce, as frequently occurs in nature, microbes may experience resource colimitation in which more than one resource simultaneously limits growth. Despite growing evidence for colimitation, the data are difficult to interpret and compare due to a lack of quantitative measures of colimitation and systematic tests of resource conditions. We hypothesize that microbes experience a continuum of nutrient limitation states and that nutrient colimitation is common in the laboratory and in nature. To address this, we develop a quantitative theory of resource colimitation that captures the range of possible limitation states and describes how they can change dynamically with resource conditions. We apply this approach to clonal populations of Escherichia coli to show that colimitation occurs in common laboratory conditions. We also show that growth rate and growth yield are colimited differently, reflecting the different underlying biology of these traits. Finally, we analyze environmental data to provide intuition for the continuum of limitation and colimitation conditions in nature. Altogether our results provide a quantitative framework for understanding and quantifying colimitation of microbes in biogeochemical, biotechnology, and human health contexts.

A microfluidic analyzer based on liquid waveguide capillary cells for the high-sensitivity determination of phosphate in seawater and its applications

BACKGROUND

Optical detection is frequently performed on microfluidic chips for colorimetric analysis. Integrating liquid waveguide capillaries with total internal reflection with the microfluidic chip requires less procedures, which is suitable in the optical detection of microfluidic systems and is a practical alternative to increase the optical path length in the colorimetric assay of microfluidic devices for higher sensitivities and lower detection limit. However, this alternative has not been applied to the connection of PMMA chips or the microfluidic devices for the detection of phosphate in seawater.

RESLUTS

Here, a lab-on-a-chip system integrating a microfluidic chip and an external liquid waveguide capillary cell was presented to detect the phosphate in seawater. The detachable total internal reflection capillary made of Teflon AF 2400 connected to the chip transports sample and transmits light, greatly reducing detection limit, eliminating the interference from stray light and widening the dynamic range of the system without specific surface treatment of the microchannel. By utilizing an internal 5-cm absorption cell and an external 20-cm liquid waveguide capillary cell, the system reaches detection limits of 59 nM and 8 nM, respectively, and can detect phosphate concentration from 0 to 23 μM. An online analyzer was developed based on the high-sensitivity system and was applied to shipboard underway analysis for two scientific cruises and to laboratory measurements for seawater samples from Xisha sea area.

SIGNIFICANCE

Correlation analyses between the shipboard and laboratory phosphate measurements and other physical and biochemical elements revealed the marine ecological characteristics of the corresponding areas, demonstrating the high-sensitivity of this method over slight variations and narrow ranges of phosphate and the ability to provide microfluidic systems for high spatiotemporal resolution phosphate determination a practical and cost-effective alternative.

Effect of temperature, nutrients and growth rate on picophytoplankton cell size across the Atlantic Ocean

The cell size of picophytoplankton populations affects their ecology and biogeochemical role, but how different environmental drivers control its variability is still not well understood. To gain insight into the role of temperature and nutrient availability as determinants of picophytoplankton population mean cell size, we carried out five microcosm experiments across the Atlantic Ocean (45°N-27°S) in which surface plankton assemblages were incubated under all combinations of three temperatures (in situ, 3 °C cooling and 3 °C warming) and two nutrient levels (unamended and addition of nitrogen and phosphorus). The overall range of variability in cell volume was 5-fold for Prochlorococcus, 8-fold for Synechococcus and 6-fold for the picoeukaryotes. We observed, in all the treatments and in the control, a consistent trend toward larger mean cell sizes over time for both Prochlorococcus and Synechococcus, which was likely the result of sample confinement. Changes in temperature and nutrient status alone did not cause clear changes in cell size, relative to the control, but the combination of warming and nutrient addition resulted in an increase in Prochlorococcus and Synechococcus cell size. The largest increases in cell volume were associated with slow or negative population net growth rates. Our results emphasize the importance of considering changes in biovolume to obtain accurate estimates of picophytoplankton biomass and suggest that the inverse relationship between growth rate and population mean cell size may be a general pattern in marine phytoplankton.

Substantial trace metal input from the 2022 Hunga Tonga-Hunga Ha'apai eruption into the South Pacific

The January 2022 eruption of the Hunga Tonga-Hunga Ha'apai (HTHH) volcano discharged 2,900 teragrams of ejecta, most of which was deposited in the South Pacific Ocean. Here we investigate its impact on the biogeochemistry of the South Pacific Gyre (SPG) using samples collected during the GEOTRACES cruise GP21 in February-April 2022. Surface water neodymium isotopes and rare earth element compositions showed a marked volcanic impact in the western SPG, potentially extending to the eastern region. Increasing trace metal concentrations in surface waters and chlorophyll-a inventories in euphotic layers between the eastern and western SPG further suggest that the volcanic eruption supplied (micro)nutrients potentially stimulating a biological response. We estimate that the HTHH eruption released up to 0.16 kt of neodymium and 32 kt of iron into the SPG, which is comparable to the annual global dust-borne Nd flux and the annual dust-borne Fe flux to the entire SPG, respectively.

Unveiling the dominance of submarine groundwater discharge on nutrient sources in the Eastern China Marginal Seas

River and atmosphere are traditionally recognized as the primary nutrient sources impacting coastal ecosystems. Despite the increasing attention towards the often-neglected submarine groundwater discharge (SGD), its understanding and significance in highly human-impacted marginal seas remain limited. This study utilizes unprecedented high-resolution data (561 seawater and 282 groundwater radium samples) to provide precise estimates of 226Ra and 228Ra sources and sinks in the Eastern China Marginal Seas. A coupled 226Ra and 228Ra mass balance model enable an integrated SGD flux of (3.7 ± 2.4) × 1012 m3 yr-1, surpassing rivers by 3.4 times. Furthermore, nutrient delivery from SGD exceeds riverine and atmospheric inputs, potentially inducing substantial changes in coastal nutrient cycles. These alterations have profound implications for primary production and biological communities, deviating significantly from the Redfield ratio. Therefore, comprehending the significance of SGD in nutrient budgets is vital for a comprehensive understanding of biogeochemical dynamics and functionality of marginal sea ecosystems.

Microbial iron limitation in the ocean's twilight zone

Primary production in the sunlit surface ocean is regulated by the supply of key nutrients, primarily nitrate, phosphate and iron (Fe), required by phytoplankton to fix carbon dioxide into biomass1-3. Below the surface ocean, remineralization of sinking organic matter rapidly regenerates nutrients, and microbial metabolism in the upper mesopelagic 'twilight zone' (200-500 m) is thought to be limited by the delivery of labile organic carbon4,5. However, few studies have examined the role of nutrients in shaping microbial production in the mesopelagic6-8. Here we report the distribution and uptake of siderophores, biomarkers for microbial Fe deficiency9 across a meridional section of the eastern Pacific Ocean. Siderophore concentrations are high not only in chronically Fe-limited surface waters but also in the twilight zone underlying the North and South Pacific subtropical gyres, two key ecosystems for the marine carbon cycle. Our findings suggest that bacterial Fe deficiency owing to low Fe availability is probably characteristic of the twilight zone in several large ocean basins, greatly expanding the region of the marine water column in which nutrients limit microbial metabolism, with potential implications for ocean carbon storage.

Climate-driven succession in marine microbiome biodiversity and biogeochemical function

Seasonal and El Niño-Southern Oscillation (ENSO) warming result in similar ocean changes as predicted with climate change. Climate-driven environmental cycles have strong impacts on microbiome diversity, but impacts on microbiome function are poorly understood. We quantified changes in microbial genomic diversity and functioning over 11 years covering seasonal and ENSO cycles at a coastal site in the southern California Current. We observed seasonal oscillations between large genome lineages during cold, nutrient rich conditions in winter and spring versus small genome lineages, including Prochlorococcus and Pelagibacter , in summer and fall. Parallel interannual changes separated communities depending on ENSO condition. Biodiversity shifts translated into clear oscillations in microbiome functional potential. Ocean warming induced an ecosystem with less iron but more macronutrient stress genes, depressed organic carbon degradation potential and biomass, and elevated carbon-to-nutrient biomass ratios. The consistent microbial response observed across time-scales points towards large climate-driven changes in marine ecosystems and biogeochemical cycles.

Dissolved organic phosphorus bond-class utilization by Synechococcus

Dissolved organic phosphorus (DOP) contains compounds with phosphoester, phosphoanhydride, and phosphorus-carbon bonds. While DOP holds significant nutritional value for marine microorganisms, the bioavailability of each bond-class to the widespread cyanobacterium Synechococcus remains largely unknown. This study evaluates bond-class specific DOP utilization by Synechococcus strains from open and coastal oceans. Both strains exhibited comparable growth rates when provided phosphate, a phosphoanhydride [3-polyphosphate and 45-polyphosphate], or a DOP compound with both phosphoanhydride and phosphoester bonds (adenosine 5'-triphosphate). Growth rates on phosphoesters [glucose-6-phosphate, adenosine 5'-monophosphate, bis(4-methylumbelliferyl) phosphate] were variable, and neither strain grew on selected phosphorus-carbon compounds. Both strains hydrolyzed 3-polyphosphate, then adenosine 5'-triphosphate, and lastly adenosine 5'-monophosphate, exhibiting preferential enzymatic hydrolysis of phosphoanhydride bonds. The strains' exoproteomes contained phosphorus hydrolases, which combined with enhanced cell-free hydrolysis of 3-polyphosphate and adenosine 5'-triphosphate under phosphate deficiency, suggests active mineralization of phosphoanhydride bonds by these exoproteins. Synechococcus alkaline phosphatases presented broad substrate specificities, including activity toward the phosphoanhydride 3-polyphosphate, with varying affinities between strains. Collectively, these findings underscore the potentially significant role of compounds with phosphoanhydride bonds in Synechococcus phosphorus nutrition and highlight varied growth and enzymatic responses to molecular diversity within DOP bond-classes, thereby expanding our understanding of microbially mediated DOP cycling in marine ecosystems.

Are microbes colimited by multiple resources?

Resource colimitation - the dependence of growth on multiple resources simultaneously - has become an important topic in microbiology due both to the development of systems approaches to cell physiology and ecology and to the relevance of colimitation to environmental science, biotechnology, and human health. Empirical tests of colimitation in microbes suggest that it may be common in nature. However, recent theoretical and empirical work has demonstrated the need for systematic measurements across resource conditions, in contrast to the factorial supplementation experiments used in most previous studies. The mechanistic causes of colimitation remain unclear in most cases and are an important challenge for future work, but we identify the alignment of resource consumption with the environment, interactions between resources, and biological and environmental heterogeneity as major factors. On the other hand, the consequences of colimitation are widespread for microbial physiology and ecology, especially the prediction and control of microbial growth, motivating continued consideration of this state in microbiology.

Whole-Cell Biosensor for Iron Monitoring as a Potential Tool for Safeguarding Biodiversity in Polar Marine Environments

Iron is a key micronutrient essential for various essential biological processes. As a consequence, alteration in iron concentration in seawater can deeply influence marine biodiversity. In polar marine environments, where environmental conditions are characterized by low temperatures, the role of iron becomes particularly significant. While iron limitation can negatively influence primary production and nutrient cycling, excessive iron concentrations can lead to harmful algal blooms and oxygen depletion. Furthermore, the growth of certain phytoplankton species can be increased in high-iron-content environments, resulting in altered balance in the marine food web and reduced biodiversity. Although many chemical/physical methods are established for inorganic iron quantification, the determination of the bio-available iron in seawater samples is more suitably carried out using marine microorganisms as biosensors. Despite existing challenges, whole-cell biosensors offer other advantages, such as real-time detection, cost-effectiveness, and ease of manipulation, making them promising tools for monitoring environmental iron levels in polar marine ecosystems. In this review, we discuss fundamental biosensor designs and assemblies, arranging host features, transcription factors, reporter proteins, and detection methods. The progress in the genetic manipulation of iron-responsive regulatory and reporter modules is also addressed to the optimization of the biosensor performance, focusing on the improvement of sensitivity and specificity.

Global biogeography of microbes driving ocean ecological status under climate change

Microbial communities play a crucial role in ocean ecology and global biogeochemical processes. However, understanding the intricate interactions among diversity, taxonomical composition, functional traits, and how these factors respond to climate change remains a significant challenge. Here, we propose seven distinct ecological statuses by systematically considering the diversity, structure, and biogeochemical potential of the ocean microbiome to delineate their biogeography. Anthropogenic climate change is expected to alter the ecological status of the surface ocean by influencing environmental conditions, particularly nutrient and oxygen contents. Our predictive model, which utilizes machine learning, indicates that the ecological status of approximately 32.44% of the surface ocean may undergo changes from the present to the end of this century, assuming no policy interventions. These changes mainly include poleward shifts in the main taxa, increases in photosynthetic carbon fixation and decreases in nutrient metabolism. However, this proportion can decrease significantly with effective control of greenhouse gas emissions. Our study underscores the urgent necessity for implementing policies to mitigate climate change, particularly from an ecological perspective.

Nitrogen uptake rates and phytoplankton composition across contrasting North Atlantic Ocean coastal regimes north and south of Cape Hatteras

Understanding nitrogen (N) uptake rates respect to nutrient availability and the biogeography of phytoplankton communities is crucial for untangling the complexities of marine ecosystems and the physical, biological, and chemical forces shaping them. In the summer of 2016, we conducted measurements of bulk microbial uptake rates for six 15N-labeled substrates: nitrate, nitrite, ammonium, urea, cyanate, and dissolve free amino acids across distinct marine provinces, including the continental shelf of the Mid-and South Atlantic Bights (MAB and SAB), the Slope Sea, and the Gulf Stream, marking the first instance of simultaneously measuring six different N uptake rates in this dynamic region. Total measured N uptake rates were lowest in the Gulf Stream followed by the SAB. Notably, the MAB exhibited significantly higher N uptake rates compared to the SAB, likely due to the excess levels of pre-existing phosphorus present in the MAB. Together, urea and nitrate uptake contributed approximately 50% of the total N uptake across the study region. Although cyanate uptake rates were consistently low, they accounted for up to 11% of the total measured N uptake at some Gulf Stream stations. Phytoplankton groups were identified based on specific pigment markers, revealing a dominance of diatoms in the shelf community, while Synechococcus, Prochlorococcus, and pico-eukaryotes dominated in oligotrophic Gulf Stream waters. The reported uptake rates in this study were mostly in agreement with previous studies conducted in coastal waters of the North Atlantic Ocean. This study suggests there are distinct regional patterns of N uptake in this physically dynamic region, correlating with nutrient availability and phytoplankton community composition. These findings contribute valuable insights into the intricate interplay of biological and chemical factors shaping N dynamics in disparate marine ecosystems.

Far-field effects of the Nile damming on the silica cycle in the Southeastern Mediterranean Sea

Silica plays a key role in the growth of silicifying primary producers (e.g., diatoms) and hence the ocean carbon pump. The Mediterranean Sea's eastern Levantine Basin (ELB) is a low silica (and low N and P) ultra-oligotrophic basin. Before 1965, Nile autumn floods were a major source of dissolved silica (DSi) and other nutrients to primary producers of the ELB continental shelf, also known as the Nilotic cell. The construction of the Aswan High Dam (AHD) in the mid-1960s, blocked these floods, drastically diminishing the autumn-diatom blooms offshore the Nile delta. However, the far-reaching and long-lasting effects of the Nile damming on the Si cycle in the ELB remain unclear. Here, we studied the changes in DSi in the surface water offshore Israel and the distribution of biogenic silica in deep-sea short sediment cores, collected hundreds of kilometers from the Nile outlet, at depths range of 1100-1900 m, offshore the ELB Israeli coast. We show post dam reduction and termination in flood related seasonality of DSi and a concurrent decrease (of up to 79 %) in biogenic silica (BSi) accumulation rates in surficial sediments relative to underlying sediments. These changes reflect the effects of Si (dissolved and particulate) retention by the AHD on diatoms production, export and burial in the ELB. This far-field effect was demonstrated in deep-sea areas subjected to intense lateral transport of resuspended sediments from the shelf via intermediate nepheloid layers and to coastal water intrusions, along the path of the pre-dam, flood plumes. Our core records show that the AHD worsened nutrient-diminished, exceptionally unfavorable conditions for diatoms that persisted in the deep ELB at least during the last four millennia.

Bunkering for change: Knowledge preparedness on the environmental aspect of ammonia as a marine fuel

Nitrogen cycling is essential to ecosystem functioning and the overall health of our planet. Ammonia, a nitrogen-containing product, as well as a nutrient, is promoted as a low-carbon fuel for the maritime sector, with spectacular production increase in plan. Similar to any other widespread fuels in the past, it is paramount to be prepared for the potential environmental impact of ammonia fuel. Here, through our preliminary calculations using literature data, we suggest that the amount of ammonia to be produced to fulfil the maritime energy need by 2050 may entail large alterations in global nitrogen cycling. Currently, the literature based on limited known cases of ammonia excess is insufficient to quantify the environmental impacts caused by the probable increase in bunkering ammonia release at global scale. With a few knowledge gaps identified, we call on the marine science community to investigate the potential environmental impact related to substantial ammonia excess, contributing new knowledge to a more environmentally sustainable future.