1
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Mi J, Chen Y, Atterberry BA, Nordstrom FL, Hirsh DA, Rossini AJ. Probing the Molecular and Macroscopic Structure of Solid Solutions by Dynamic Nuclear Polarization (DNP) Enhanced 13C and 15N Solid-State NMR Spectroscopy. Mol Pharm 2024; 21:2949-2959. [PMID: 38685852 DOI: 10.1021/acs.molpharmaceut.4c00083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/02/2024]
Abstract
Crystallization is a widely used purification technique in the manufacture of active pharmaceutical ingredients (APIs) and precursor molecules. However, when impurities and desired compounds have similar molecular structures, separation by crystallization may become challenging. In such cases, some impurities may form crystalline solid solutions with the desired product during recrystallization. Understanding the molecular structure of these recrystallized solid solutions is crucial to devise methods for effective purification. Unfortunately, there are limited analytical techniques that provide insights into the molecular structure or spatial distribution of impurities that are incorporated within recrystallized products. In this study, we investigated model solid solutions formed by recrystallizing salicylic acid (SA) in the presence of anthranilic acid (AA). These two molecules are known to form crystalline solid solutions due to their similar molecular structures. To overcome challenges associated with the long 1H longitudinal relaxation times (T1(1H)) of SA and AA, we employed dynamic nuclear polarization (DNP) and 15N isotope enrichment to enable solid-state NMR experiments. Results of solid-state NMR experiments and DFT calculations revealed that SA and AA are homogeneously alloyed as a solid solution. Heteronuclear correlation (HETCOR) experiments and plane-wave DFT structural models provide further evidence of the molecular-level interactions between SA and AA. This research provides valuable insights into the molecular structure of recrystallized solid solutions, contributing to the development of effective purification strategies and an understanding of the physicochemical properties of solid solutions.
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Affiliation(s)
- Jiashan Mi
- Department of Chemistry, Iowa State University, Ames, Iowa 50010, United States
| | - Yunhua Chen
- Department of Chemistry, Iowa State University, Ames, Iowa 50010, United States
| | | | - Fredrik L Nordstrom
- Material & Analytical Sciences, Boehringer-Ingelheim, Ridgefield, Connecticut 06877, United States
| | - David A Hirsh
- Material & Analytical Sciences, Boehringer-Ingelheim, Ridgefield, Connecticut 06877, United States
| | - Aaron J Rossini
- Department of Chemistry, Iowa State University, Ames, Iowa 50010, United States
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2
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Eggeling A, Ngendahimana T, Jeschke G, Eaton GR, Eaton SS. Exploring tunneling ESEEM beyond methyl groups in nitroxides at low temperatures. Phys Chem Chem Phys 2024; 26:15240-15254. [PMID: 38751211 PMCID: PMC11135458 DOI: 10.1039/d4cp01212g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Accepted: 05/04/2024] [Indexed: 05/30/2024]
Abstract
Tunneling of methyl rotors coupled to an electron spin causes magnetic field independent electron spin echo envelope modulation (ESEEM) at low temperatures. For nitroxides containing alkyl substituents, we observe this effect as a contribution at the beginning of the Hahn echo decay signal occurring on a faster time scale than the matrix-induced decoherence. The tunneling ESEEM contribution includes information on the local environment of the methyl rotors, which manifests as a distribution of rotation barriers P(V3) when measuring the paramagnetic species in a glassy matrix. Here, we investigate the differences in tunneling behaviour of geminal methyl and ethyl group rotors in nitroxides while exploring different levels of theory in our previously introduced methyl quantum rotor (MQR) model. Moreover, we extend the MQR model to analyze the tunneling ESEEM originating from two different rotor types coupled to the same electron spin. We find that ethyl groups in nitroxides give rise to stronger tunneling ESEEM contributions than methyl groups because the difference between hyperfine couplings of their methyl protons better matches the tunneling frequency. The methyl rotors of both ethyl and propyl groups exhibit distributions at lower rotation barriers compared to geminal methyl groups. This is in good agreement with density functional theory (DFT) calculations of their rotation barriers and showcases that conformational flexibility impacts the hindrance of rotation. Using Monte-Carlo based fitting in combination with an identifiability analysis of the MQR model parameter space, we extract rotation barrier distributions for the individual rotor types in mixed-rotor nitroxides as well as identify which rotors dominate the observed tunneling contribution in the Hahn echo decay signal.
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Affiliation(s)
- Andrea Eggeling
- ETH Zurich, Department of Chemistry and Applied Biosciences, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland.
| | - Thacien Ngendahimana
- Department of Chemistry and Biochemistry, University of Denver, Denver, CO 80208, USA.
| | - Gunnar Jeschke
- ETH Zurich, Department of Chemistry and Applied Biosciences, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland.
| | - Gareth R Eaton
- Department of Chemistry and Biochemistry, University of Denver, Denver, CO 80208, USA.
| | - Sandra S Eaton
- Department of Chemistry and Biochemistry, University of Denver, Denver, CO 80208, USA.
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3
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Inukai M, Sato H, Miyanishi K, Negoro M, Kagawa A, Hori Y, Shigeta Y, Kurihara T, Nakamura K. Cocrystalline Matrices for Hyperpolarization at Room Temperature Using Photoexcited Electrons. J Am Chem Soc 2024; 146:14539-14545. [PMID: 38754971 DOI: 10.1021/jacs.4c01050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/18/2024]
Abstract
We propose using cocrystals as effective polarization matrices for triplet dynamic nuclear polarization (DNP) at room temperature. The polarization source can be uniformly doped into cocrystals formed through acid-acid, amide-amide, and acid-amide synthons. The dense-packing crystal structures, facilitated by multiple hydrogen bonding and π-π interactions, result in extended T1 relaxation times, enabling efficient polarization diffusion within the crystals. Our study demonstrates the successful polarization of a DNP-magnetic resonance imaging molecular probe, such as urea, within a cocrystal matrix at room temperature using triplet-DNP.
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Affiliation(s)
- Munehiro Inukai
- Graduate School of Technology, Industrial and Social Sciences, Tokushima University, Tokushima 770-8506, Japan
| | - Haruki Sato
- Graduate School of Science and Technology for Innovation, Tokushima University, Tokushima 770-8506, Japan
| | - Koichiro Miyanishi
- Graduate School of Engineering Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
- Center for Quantum Information and Quantum Biology, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Makoto Negoro
- Center for Quantum Information and Quantum Biology, Osaka University, Toyonaka, Osaka 560-8531, Japan
- Institute for Quantum Life Science, National Institutes for Quantum and Radiological Science and Technology, Inage-Ku, Chiba 263-8555, Japan
- Premium Research Institute for Human Metaverse Medicine, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - Akinori Kagawa
- Center for Quantum Information and Quantum Biology, Osaka University, Toyonaka, Osaka 560-8531, Japan
- Premium Research Institute for Human Metaverse Medicine, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - Yuta Hori
- Center for Computational Sciences, University of Tsukuba, Tsukuba 305-8577, Japan
| | - Yasuteru Shigeta
- Center for Computational Sciences, University of Tsukuba, Tsukuba 305-8577, Japan
| | - Takuya Kurihara
- Division of Material Chemistry, Graduate School of Natural Science and Technology, Kanazawa University, Kanazawa, Ishikawa 920-1192, Japan
| | - Koichi Nakamura
- Graduate School of Technology, Industrial and Social Sciences, Tokushima University, Tokushima 770-8506, Japan
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4
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Equbal A, Ramanathan C, Han S. Dipolar Order Induced Electron Spin Hyperpolarization. J Phys Chem Lett 2024; 15:5397-5406. [PMID: 38739470 PMCID: PMC11129302 DOI: 10.1021/acs.jpclett.4c00294] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Revised: 05/04/2024] [Accepted: 05/06/2024] [Indexed: 05/16/2024]
Abstract
The structure of coupled electron spin systems is of fundamental interest to many applications, including dynamic nuclear polarization (DNP), enhanced nuclear magnetic resonance (NMR), the generation of electron spin qubits for quantum information science (QIS), and quantitative studies of paramagnetic systems by electron paramagnetic resonance (EPR). However, the characterization of electron spin coupling networks is nontrivial, especially at high magnetic fields. This study focuses on a system containing high concentrations of trityl radicals that give rise to a DNP enhancement profile of 1H NMR characteristic of the presence of electron spin clusters. When this system is subject to selective microwave saturation through pump-probe ELectron DOuble Resonance (ELDOR) experiments, electron spin hyperpolarization is observed. We show that the generation of an out-of-equilibrium longitudinal dipolar order is responsible for the transient hyperpolarization of electron spins. Notably, the coupled electron spin system needs to form an AX-like system (where the difference in the Zeeman interactions of two spins is larger than their coupling interaction) such that selective microwave irradiation can generate signatures of electron spin hyperpolarization. We show that the extent of dipolar order, as manifested in the extent of electron spin hyperpolarization generated, can be altered by tuning the pump or probe pulse length, or the interpulse delay in ELDOR experiments that change the efficiency to generate or readout longitudinal dipolar order. Pump-probe ELDOR with selective saturation is an effective means for characterizing coupled electron spins forming AX-type spin systems that are foundational for DNP and quantum sensing.
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Affiliation(s)
- Asif Equbal
- Department
of Chemistry, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, United Arab Emirates
- Center
for Quantum and Topological Systems, New
York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, United Arab Emirates
| | - Chandrasekhar Ramanathan
- Department
of Physics and Astronomy, Dartmouth College, Hanover, New Hampshire 03755, United States
| | - Songi Han
- Department
of Chemistry and Biochemistry, University
of California, Santa Barbara, Santa
Barbara, California 93106, United States
- Department
of Chemical Engineering, University of California,
Santa Barbara, Santa Barbara, California 93106, United States
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5
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De Biasi F, Hope MA, Qiu Y, Brown PJ, Visegrádi M, Ouari O, Wasielewski MR, Emsley L. Magic Angle Spinning Solid-State 13C Photochemically Induced Dynamic Nuclear Polarization by a Synthetic Donor-Chromophore-Acceptor System at 9.4 T. J Phys Chem Lett 2024; 15:5488-5494. [PMID: 38748557 PMCID: PMC11129313 DOI: 10.1021/acs.jpclett.4c01121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Revised: 05/06/2024] [Accepted: 05/10/2024] [Indexed: 05/24/2024]
Abstract
Solid-state photochemically induced dynamic nuclear polarization (photo-CIDNP) is a nuclear magnetic resonance spectroscopy technique in which nuclear spin hyperpolarization is generated upon optical irradiation of an appropriate donor-acceptor system. Until now, solid-state photo-CIDNP at high magnetic fields has been observed only in photosynthetic reaction centers and flavoproteins. In the present work, we show that the effect is not limited to such biomolecular samples, and solid-state 13C photo-CIDNP can be observed at 9.4 T under magic angle spinning using a frozen solution of a synthetic molecular system dissolved in an organic solvent. Signal enhancements for the source molecule larger than a factor of 2300 are obtained. In addition, we show that bulk 13C hyperpolarization of the solvent can be generated via spontaneous 13C-13C spin diffusion at natural abundance.
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Affiliation(s)
- Federico De Biasi
- Institut
des Sciences et Ingenierie Chimiques, École
Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Michael A. Hope
- Institut
des Sciences et Ingenierie Chimiques, École
Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Yunfan Qiu
- Department
of Chemistry, Center for Molecular Quantum Transduction, Paula M.
Trienens Institute for Sustainability and Energy, Northwestern University, Evanston, Illinois 60208-3113, United States
| | - Paige J. Brown
- Department
of Chemistry, Center for Molecular Quantum Transduction, Paula M.
Trienens Institute for Sustainability and Energy, Northwestern University, Evanston, Illinois 60208-3113, United States
| | - Máté Visegrádi
- Institut
des Sciences et Ingenierie Chimiques, École
Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Olivier Ouari
- Aix-Marseille
University, Centre National de la Recherche Scientifique (CNRS), Institut
de Chimie Radicalaire, 13013 Marseille, France
| | - Michael R. Wasielewski
- Department
of Chemistry, Center for Molecular Quantum Transduction, Paula M.
Trienens Institute for Sustainability and Energy, Northwestern University, Evanston, Illinois 60208-3113, United States
| | - Lyndon Emsley
- Institut
des Sciences et Ingenierie Chimiques, École
Polytechnique Fedérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
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6
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Korzeczek MC, Dagys L, Müller C, Tratzmiller B, Salhov A, Eichhorn T, Scheuer J, Knecht S, Plenio MB, Schwartz I. Towards a unified picture of polarization transfer - pulsed DNP and chemically equivalent PHIP. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2024; 362:107671. [PMID: 38614057 DOI: 10.1016/j.jmr.2024.107671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Revised: 03/30/2024] [Accepted: 04/03/2024] [Indexed: 04/15/2024]
Abstract
Nuclear spin hyperpolarization techniques, such as dynamic nuclear polarization (DNP) and parahydrogen-induced polarization (PHIP), have revolutionized nuclear magnetic resonance and magnetic resonance imaging. In these methods, a readily available source of high spin order, either electron spins in DNP or singlet states in hydrogen for PHIP, is brought into close proximity with nuclear spin targets, enabling efficient transfer of spin order under external quantum control. Despite vast disparities in energy scales and interaction mechanisms between electron spins in DNP and nuclear singlet states in PHIP, a pseudo-spin formalism allows us to establish an intriguing equivalence. As a result, the important low-field polarization transfer regime of PHIP can be mapped onto an analogous system equivalent to pulsed-DNP. This establishes a correspondence between key polarization transfer sequences in PHIP and DNP, facilitating the transfer of sequence development concepts. This promises fresh insights and significant cross-pollination between DNP and PHIP polarization sequence developers.
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Affiliation(s)
- Martin C Korzeczek
- Institute of Theoretical Physics and IQST, Albert-Einstein Allee 11, Ulm University, 89081, Ulm, Germany
| | | | | | - Benedikt Tratzmiller
- Institute of Theoretical Physics and IQST, Albert-Einstein Allee 11, Ulm University, 89081, Ulm, Germany; Carl Zeiss MultiSEM GmbH, 73447, Oberkochen, Germany
| | - Alon Salhov
- NVision Imaging Technologies GmbH, 89081, Ulm, Germany; Racah Institute of Physics, The Hebrew University of Jerusalem, Jerusalem, 91904, Givat Ram, Israel
| | - Tim Eichhorn
- NVision Imaging Technologies GmbH, 89081, Ulm, Germany
| | | | | | - Martin B Plenio
- Institute of Theoretical Physics and IQST, Albert-Einstein Allee 11, Ulm University, 89081, Ulm, Germany.
| | - Ilai Schwartz
- NVision Imaging Technologies GmbH, 89081, Ulm, Germany.
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7
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Haro Mares NB, Döller SC, Wissel T, Hoffmann M, Vogel M, Buntkowsky G. Structures and Dynamics of Complex Guest Molecules in Confinement, Revealed by Solid-State NMR, Molecular Dynamics, and Calorimetry. Molecules 2024; 29:1669. [PMID: 38611950 PMCID: PMC11013127 DOI: 10.3390/molecules29071669] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Revised: 03/29/2024] [Accepted: 04/05/2024] [Indexed: 04/14/2024] Open
Abstract
This review gives an overview of current trends in the investigation of confined molecules such as water, small and higher alcohols, carbonic acids, ethylene glycol, and non-ionic surfactants, such as polyethylene glycol or Triton-X, as guest molecules in neat and functionalized mesoporous silica materials employing solid-state NMR spectroscopy, supported by calorimetry and molecular dynamics simulations. The combination of steric interactions, hydrogen bonds, and hydrophobic and hydrophilic interactions results in a fascinating phase behavior in the confinement. Combining solid-state NMR and relaxometry, DNP hyperpolarization, molecular dynamics simulations, and general physicochemical techniques, it is possible to monitor these confined molecules and gain deep insights into this phase behavior and the underlying molecular arrangements. In many cases, the competition between hydrogen bonding and electrostatic interactions between polar and non-polar moieties of the guests and the host leads to the formation of ordered structures, despite the cramped surroundings inside the pores.
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Affiliation(s)
- Nadia B. Haro Mares
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Peter-Grünberg-Str. 8, D-64287 Darmstadt, Germany; (N.B.H.M.); (S.C.D.); (T.W.)
| | - Sonja C. Döller
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Peter-Grünberg-Str. 8, D-64287 Darmstadt, Germany; (N.B.H.M.); (S.C.D.); (T.W.)
| | - Till Wissel
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Peter-Grünberg-Str. 8, D-64287 Darmstadt, Germany; (N.B.H.M.); (S.C.D.); (T.W.)
| | - Markus Hoffmann
- Department of Chemistry and Biochemistry, State University of New York at Brockport, Brockport, NY 14420, USA
| | - Michael Vogel
- Institute for Condensed Matter Physics, Technische Universität Darmstadt, Hochschulstr. 6, D-64289 Darmstadt, Germany
| | - Gerd Buntkowsky
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Peter-Grünberg-Str. 8, D-64287 Darmstadt, Germany; (N.B.H.M.); (S.C.D.); (T.W.)
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8
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Zheng M, Chu Y, Wang Q, Wang Y, Xu J, Deng F. Advanced solid-state NMR spectroscopy and its applications in zeolite chemistry. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2024; 140-141:1-41. [PMID: 38705634 DOI: 10.1016/j.pnmrs.2023.11.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 11/10/2023] [Accepted: 11/13/2023] [Indexed: 05/07/2024]
Abstract
Solid-state NMR spectroscopy (ssNMR) can provide details about the structure, host-guest/guest-guest interactions and dynamic behavior of materials at atomic length scales. A crucial use of ssNMR is for the characterization of zeolite catalysts that are extensively employed in industrial catalytic processes. This review aims to spotlight the recent advancements in ssNMR spectroscopy and its application to zeolite chemistry. We first review the current ssNMR methods and techniques that are relevant to characterize zeolite catalysts, including advanced multinuclear and multidimensional experiments, in situ NMR techniques and hyperpolarization methods. Of these, the methodology development on half-integer quadrupolar nuclei is emphasized, which represent about two-thirds of stable NMR-active nuclei and are widely present in catalytic materials. Subsequently, we introduce the recent progress in understanding zeolite chemistry with the aid of these ssNMR methods and techniques, with a specific focus on the investigation of zeolite framework structures, zeolite crystallization mechanisms, surface active/acidic sites, host-guest/guest-guest interactions, and catalytic reaction mechanisms.
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Affiliation(s)
- Mingji Zheng
- National Centre for Magnetic Resonance in Wuhan, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yueying Chu
- National Centre for Magnetic Resonance in Wuhan, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China
| | - Qiang Wang
- National Centre for Magnetic Resonance in Wuhan, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.
| | - Yongxiang Wang
- National Centre for Magnetic Resonance in Wuhan, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jun Xu
- National Centre for Magnetic Resonance in Wuhan, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China
| | - Feng Deng
- National Centre for Magnetic Resonance in Wuhan, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.
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9
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Miao Z, Scott FJ, van Tol J, Bowers CR, Veige AS, Mentink-Vigier F. Soliton Based Dynamic Nuclear Polarization: An Overhauser Effect in Cyclic Polyacetylene at High Field and Room Temperature. J Phys Chem Lett 2024:3369-3375. [PMID: 38498927 DOI: 10.1021/acs.jpclett.3c03591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/20/2024]
Abstract
Polyacetylene, a versatile material with an electrical conductivity that can span 7 orders of magnitude, is the prototypical conductive polymer. In this letter, we report the observation of a significant Overhauser effect at the high magnetic field of 14.1 T that operates at 100 K and room temperature in both linear and cyclic polyacetylene. Significant NMR signal enhancements ranging from 24 to 45 are obtained. The increased sensitivity enabled the characterization of the polymer chain defects at natural abundance. The absence of end methyl group carbon-13 signals provides proof of the closed-loop molecular structure of cyclic polyacetylene. The remarkable efficiency of the soliton based Overhauser effect DNP mechanism at high temperature and high field holds promise for applications and extension to other conductive polymer systems.
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Affiliation(s)
- Z Miao
- Center for Catalysis, Department of Chemistry, University of Florida, Gainesville, Florida 32611, United States
| | - F J Scott
- National High Magnetic Field Laboratory, Florida State University, 1800 E. Paul Dirac Drive, Tallahassee, Florida 32310, United States
| | - J van Tol
- National High Magnetic Field Laboratory, Florida State University, 1800 E. Paul Dirac Drive, Tallahassee, Florida 32310, United States
| | - C R Bowers
- Center for Catalysis, Department of Chemistry, University of Florida, Gainesville, Florida 32611, United States
- National High Magnetic Field Laboratory, Florida State University, 1800 E. Paul Dirac Drive, Tallahassee, Florida 32310, United States
| | - A S Veige
- Center for Catalysis, Department of Chemistry, University of Florida, Gainesville, Florida 32611, United States
| | - F Mentink-Vigier
- National High Magnetic Field Laboratory, Florida State University, 1800 E. Paul Dirac Drive, Tallahassee, Florida 32310, United States
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10
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Luu QS, Nguyen QT, Manh HN, Yun S, Kim J, Do UT, Jeong K, Lee SU, Lee Y. SABRE hyperpolarization of nicotinamide derivatives and their molecular dynamics properties. Analyst 2024; 149:1068-1073. [PMID: 38265242 DOI: 10.1039/d3an02053c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2024]
Abstract
Signal amplification by reversible exchange hyperpolarization explores the chemical structure and kinetic properties of nicotinamide derivatives. N-Benzyl nicotinamide and nicotinic acid hydrazide compounds display relatively fast dissociation rates of approximately 7-8 s-1 and long proton T1 relaxation times of 5-20 s, respectively. Consequently, these substrates exhibit remarkable signal enhancements, reaching approximately 175 and 102 fold, respectively, underscoring the efficacy of the hyperpolarization technique in elucidating the behavior of these compounds.
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Affiliation(s)
- Quy Son Luu
- Department of Bionano Technology, Center for Bionano Intelligence Education and Research, Hanyang University, Ansan 15588, South Korea.
| | - Quynh Thi Nguyen
- Department of Applied Chemistry, Hanyang University, Ansan 15588, South Korea
| | - Hung Ngo Manh
- School of Chemical Engineering, Sungkyunkwan University, Suwon 16149, South Korea.
| | - Seokki Yun
- Department of Applied Chemistry, Hanyang University, Ansan 15588, South Korea
| | - Jiwon Kim
- Department of Bionano Technology, Center for Bionano Intelligence Education and Research, Hanyang University, Ansan 15588, South Korea.
| | - Uyen Thi Do
- Department of Bionano Technology, Center for Bionano Intelligence Education and Research, Hanyang University, Ansan 15588, South Korea.
| | - Keunhong Jeong
- Department of Chemistry, Korea Military Academy, Seoul, 01805, South Korea.
| | - Sang Uck Lee
- School of Chemical Engineering, Sungkyunkwan University, Suwon 16149, South Korea.
| | - Youngbok Lee
- Department of Bionano Technology, Center for Bionano Intelligence Education and Research, Hanyang University, Ansan 15588, South Korea.
- Department of Applied Chemistry, Hanyang University, Ansan 15588, South Korea
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11
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Li J, Wang Y, Distefano MD, Wagner CR, Pomerantz WCK. Multivalent Fluorinated Nanorings for On-Cell 19F NMR. Biomacromolecules 2024; 25:1330-1339. [PMID: 38254252 DOI: 10.1021/acs.biomac.3c01391] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2024]
Abstract
The design of imaging agents with a high fluorine content is necessary for overcoming the challenges of low sensitivity in 19F magnetic resonance imaging (MRI)-based molecular imaging. Chemically self-assembled nanorings (CSANs) provide a strategy to increase the fluorine content through multivalent display. We previously reported an 19F NMR-based imaging tracer, in which case a CSAN-compatible epidermal growth factor receptor (EGFR)-targeting protein E1-dimeric dihydrofolate (E1-DD) was bioconjugated to a highly fluorinated peptide. Despite good 19F NMR performance in aqueous solutions, a limited signal was observed in cell-based 19F NMR using this monomeric construct, motivating further design. Here, we design several new E1-DD proteins bioconjugated to peptides of different fluorine contents. Flow cytometry analysis was used to assess the effect of variable fluorinated peptide sequences on the cellular binding characteristics. Structure-optimized protein, RTC-3, displayed an optimal spectral performance with high affinity and specificity for EGFR-overexpressing cells. To further improve the fluorine content, we next engineered monomeric RTC-3 into CSAN, η-RTC-3. With an approximate eightfold increase in the fluorine content, multivalent η-RTC-3 maintained high cellular specificity and optimal 19F NMR spectral behavior. Importantly, the first cell-based 19F NMR spectra of η-RTC-3 were obtained bound to EGFR-expressing A431 cells, showing a significant amplification in the signal. This new design illustrated the potential of multivalent fluorinated CSANs for future 19F MRI molecular imaging applications.
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Affiliation(s)
- Jiaqian Li
- Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, United States
| | - Yiao Wang
- Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, United States
| | - Mark D Distefano
- Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, United States
| | - Carston R Wagner
- Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, United States
- Department of Medicinal Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, United States
| | - William C K Pomerantz
- Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, United States
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12
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Lamahewage SNS, Atterberry BA, Dorn RW, Gi E, Kimball MR, Blümel J, Vela J, Rossini AJ. Accelerated acquisition of wideline solid-state NMR spectra of spin 3/2 nuclei by frequency-stepped indirect detection experiments. Phys Chem Chem Phys 2024; 26:5081-5096. [PMID: 38259035 DOI: 10.1039/d3cp05055f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2024]
Abstract
73% of all NMR-active nuclei are quadrupolar nuclei with a nuclear spin I > 1/2. The broadening of the solid-state NMR signals by the quadrupolar interaction often leads to poor sensitivity and low resolution. In this work we present experimental and theoretical investigations of magic angle spinning (MAS) 1H{X} double-echo resonance-echo saturation-pulse double-resonance (DE-RESPDOR) and Y{X} J-resolved solid-state NMR experiments for the indirect detection of spin 3/2 quadrupolar nuclei (X = spin 3/2 nuclei, Y = spin 1/2 nuclei). In these experiments, the spectrum of the quadrupolar nucleus is reconstructed by plotting the observed dephasing of the detected spin as a function of the transmitter offset of the indirectly detected spin. Numerical simulations were used to investigate the achievable levels of dephasing and to predict the lineshapes of indirectly detected NMR spectra of the quadrupolar nucleus. We demonstrate 1H, 31P and 207Pb detection of 35Cl, 81Br, and 63Cu (I = 3/2) nuclei in trans-Cl2Pt(NH3)2 (transplatin), (CH3NH3)PbCl3 (methylammonium lead chloride, MAPbCl3), (CH3NH3)PbBr3 (methylammonium lead bromide, MAPbBr3) and CH3C(CH2PPh2)3CuI (1,1,1-tris(diphenylphosphinomethyl)ethane copper(I) iodide, triphosCuI), respectively. In all of these experiments, we were able to detect megahertz wide central transition or satellite transition powder patterns. Significant time savings and gains in sensitivity were attained in several test cases. Additionally, the indirect detection experiments provide valuable structural information because they confirm the presence of dipolar or scalar couplings between the detected nucleus and the quadrupolar nucleus of interest. Finally, numerical simulations suggest these methods are also potentially applicable to abundant spin 5/2 and spin 7/2 quadrupolar nuclei.
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Affiliation(s)
- Sujeewa N S Lamahewage
- US Department of Energy, Ames National Laboratory, Ames, Iowa, 50011, USA.
- Iowa State University, Department of Chemistry, Ames, IA, 50011, USA
| | - Benjamin A Atterberry
- US Department of Energy, Ames National Laboratory, Ames, Iowa, 50011, USA.
- Iowa State University, Department of Chemistry, Ames, IA, 50011, USA
| | - Rick W Dorn
- US Department of Energy, Ames National Laboratory, Ames, Iowa, 50011, USA.
- Iowa State University, Department of Chemistry, Ames, IA, 50011, USA
| | - Eunbyeol Gi
- US Department of Energy, Ames National Laboratory, Ames, Iowa, 50011, USA.
- Iowa State University, Department of Chemistry, Ames, IA, 50011, USA
| | - Maxwell R Kimball
- Texas A&M University, Department of Chemistry, College Station, Texas, 77842, USA.
| | - Janet Blümel
- Texas A&M University, Department of Chemistry, College Station, Texas, 77842, USA.
| | - Javier Vela
- US Department of Energy, Ames National Laboratory, Ames, Iowa, 50011, USA.
- Iowa State University, Department of Chemistry, Ames, IA, 50011, USA
| | - Aaron J Rossini
- US Department of Energy, Ames National Laboratory, Ames, Iowa, 50011, USA.
- Iowa State University, Department of Chemistry, Ames, IA, 50011, USA
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13
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Harrabi R, Halbritter T, Alarab S, Chatterjee S, Wolska-Pietkiewicz M, Damodaran KK, van Tol J, Lee D, Paul S, Hediger S, Sigurdsson ST, Mentink-Vigier F, De Paëpe G. AsymPol-TEKs as efficient polarizing agents for MAS-DNP in glass matrices of non-aqueous solvents. Phys Chem Chem Phys 2024; 26:5669-5682. [PMID: 38288878 PMCID: PMC10849081 DOI: 10.1039/d3cp04271e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Accepted: 01/22/2024] [Indexed: 02/03/2024]
Abstract
Two polarizing agents from the AsymPol family, AsymPol-TEK and cAsymPol-TEK (methyl-free version) are introduced for MAS-DNP applications in non-aqueous solvents. The performance of these new biradicals is rationalized in detail using a combination of electron paramagnetic resonance spectroscopy, density functional theory, molecular dynamics and quantitative MAS-DNP spin dynamics simulations. By slightly modifying the experimental protocol to keep the sample temperature low at insertion, we are able to obtain reproducable DNP-NMR data with 1,1,2,2-tetrachloroethane (TCE) at 100 K, which facilitates optimization and comparison of different polarizing agents. At intermediate magnetic fields, AsymPol-TEK and cAsymPol-TEK provide 1.5 to 3-fold improvement in sensitivity compared to TEKPol, one of the most widely used polarizing agents for organic solvents, with significantly shorter DNP build-up times of ∼1 s and ∼2 s at 9.4 and 14.1 T respectively. In the course of the work, we also isolated and characterized two diastereoisomers that can form during the synthesis of AsymPol-TEK; their difference in performance is described and discussed. Finally, the advantages of the AsymPol-TEKs are demonstrated by recording 2D 13C-13C correlation experiments at natural 13C-abundance of proton-dense microcrystals and by polarizing the surface of ZnO nanocrystals (NCs) coated with diphenyl phosphate ligands. For those experiments, cAsymPol-TEK yielded a three-fold increase in sensitivity compared to TEKPol, corresponding to a nine-fold time saving.
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Affiliation(s)
- Rania Harrabi
- Univ. Grenoble Alpes, CEA, CNRS, IRIG, MEM, 38000 Grenoble, France.
| | - Thomas Halbritter
- University of Iceland, Department of Chemistry, Science Institute, Dunhaga 3, 107 Reykjavik, Iceland.
| | - Shadi Alarab
- Univ. Grenoble Alpes, CEA, CNRS, IRIG, MEM, 38000 Grenoble, France.
| | - Satyaki Chatterjee
- University of Iceland, Department of Chemistry, Science Institute, Dunhaga 3, 107 Reykjavik, Iceland.
| | | | - Krishna K Damodaran
- University of Iceland, Department of Chemistry, Science Institute, Dunhaga 3, 107 Reykjavik, Iceland.
| | - Johan van Tol
- National High Magnetic Field Laboratory, Florida State University, Tallahassee, FL 32301, USA.
| | - Daniel Lee
- Univ. Grenoble Alpes, CEA, CNRS, IRIG, MEM, 38000 Grenoble, France.
| | - Subhradip Paul
- Univ. Grenoble Alpes, CEA, CNRS, IRIG, MEM, 38000 Grenoble, France.
| | - Sabine Hediger
- Univ. Grenoble Alpes, CEA, CNRS, IRIG, MEM, 38000 Grenoble, France.
| | - Snorri Th Sigurdsson
- University of Iceland, Department of Chemistry, Science Institute, Dunhaga 3, 107 Reykjavik, Iceland.
| | - Frederic Mentink-Vigier
- National High Magnetic Field Laboratory, Florida State University, Tallahassee, FL 32301, USA.
| | - Gaël De Paëpe
- Univ. Grenoble Alpes, CEA, CNRS, IRIG, MEM, 38000 Grenoble, France.
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14
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Cao W, Yakimov A, Qian X, Li J, Peng X, Kong X, Copéret C. Surface Sites and Ligation in Amine-capped CdSe Nanocrystals. Angew Chem Int Ed Engl 2023; 62:e202312713. [PMID: 37869935 DOI: 10.1002/anie.202312713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 10/20/2023] [Accepted: 10/23/2023] [Indexed: 10/24/2023]
Abstract
Converting colloidal nanocrystals (NCs) into devices for various applications is facilitated by designing and controlling their surface properties. One key strategy for tailoring surface properties is thus to choose tailored surface ligands. In that context, amines have been universally used, with the goal to improve NCs synthesis, processing and performances. However, understanding the nature of surface sites in amine-capped NCs remains challenging, due to the complex surface compositions as well as surface ligands dynamic. Here, we investigate both surface sites and amine ligation in CdSe NCs by combining advanced NMR spectroscopy and computational modelling. Notably, dynamic nuclear polarization (DNP) enhanced 113 Cd and 77 Se 1D NMR helps to identify both bulk and surface sites of NCs, while 113 Cd 2D NMR spectroscopy enables to resolve amines terminated sites on both Se-rich and nonpolar surfaces. In addition to directly bonding to surface sites, amines are shown to also interact through hydrogen-bonding with absorbed water as revealed by 15 N NMR, augmented with computations. The characterization methodology developed for this work provides unique molecular-level insight into the surface sites of a range of amine-capped CdSe NCs, and paves the way to identify structure-function relationships and rational approaches towards colloidal NCs with tailored properties.
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Affiliation(s)
- Weicheng Cao
- Department of Chemistry and Applied Biosciences, ETH Zürich, 8093, Zürich, Switzerland
- Department of Chemistry, Key Laboratory of Excited-State Materials of Zhejiang Province, Zhejiang University, Hangzhou, 310058, China
| | - Alexander Yakimov
- Department of Chemistry and Applied Biosciences, ETH Zürich, 8093, Zürich, Switzerland
| | - Xudong Qian
- Department of Chemistry, Key Laboratory of Excited-State Materials of Zhejiang Province, Zhejiang University, Hangzhou, 310058, China
| | - Jiongzhao Li
- Department of Chemistry, Key Laboratory of Excited-State Materials of Zhejiang Province, Zhejiang University, Hangzhou, 310058, China
| | - Xiaogang Peng
- Department of Chemistry, Key Laboratory of Excited-State Materials of Zhejiang Province, Zhejiang University, Hangzhou, 310058, China
| | - Xueqian Kong
- Institute of Translational Medicine, Shanghai Jiao Tong University, Shanghai, 200240, China
- Department of Chemistry, Key Laboratory of Excited-State Materials of Zhejiang Province, Zhejiang University, Hangzhou, 310058, China
| | - Christophe Copéret
- Department of Chemistry and Applied Biosciences, ETH Zürich, 8093, Zürich, Switzerland
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15
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Biswas R, Chen Y, Vela J, Rossini AJ. Relativistic DFT Calculations of Cadmium and Selenium Solid-State NMR Spectra of CdSe Nanocrystal Surfaces. ACS OMEGA 2023; 8:44362-44371. [PMID: 38027327 PMCID: PMC10666156 DOI: 10.1021/acsomega.3c07680] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Revised: 10/11/2023] [Accepted: 10/16/2023] [Indexed: 12/01/2023]
Abstract
Solid-state NMR spectra have been used to probe the structure of CdSe nanocrystals and propose detailed models of their surface structures. Density functional theory (DFT)-optimized cluster models that represent probable molecular structures of carboxylate-coordinated surface sites have been proposed. However, to the best of our knowledge, 113Cd and 77Se chemical shifts have not been calculated for these surface models. We performed relativistic DFT calculations of cadmium and selenium magnetic shielding tensors on model compounds with previously measured solid-state NMR spectra with (i) the four-component Dirac-Kohn-Sham (DKS) Hamiltonian and (ii) the scalar and (iii) spin-orbit levels within the ZORA Hamiltonian. Molecular clusters with Cd and Se sites in varying bonding environments were used to model CdSe (100) and CdSe(111) surfaces capped with carboxylic acid ligands. Our calculations identify the observed 113Cd isotropic chemical shifts δ(iso) of -465, -318, and -146 ppm arising from CdSeO3, CdSe2O2, and CdSe3O surface groups, respectively, with very good agreement with experimental measurements. The 113Cd chemical shifts linearly decrease with the number of O-neighbors. The calculated spans (δ11 - δ33) encompass the experimental values for CdSe3O and CdSe2O2 clusters but are slightly larger than the measured value for CdSeO3 clusters. Relativistic DFT calculations predicted a one-bond 113Cd-77Se scalar coupling of 258 Hz, which is in good agreement with the experimental values of 250 Hz. With a dense coverage of carboxylic acid ligands, the CdSe (100) surface shows a distribution of Cd-Se bond lengths and J-couplings. Relativistic DFT simulations thus aid in interpretation of NMR spectra of CdSe nanocrystals and related nanomaterials.
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Affiliation(s)
- Rana Biswas
- U.S.
Department of Energy Ames National Laboratory, Ames, Iowa 50011. United States
- Department
of Physics and Astronomy; Electrical & Computer Engineering; Microelectronics
Research Center, Iowa State University, Ames, Iowa 50011. United States
| | - Yunhua Chen
- U.S.
Department of Energy Ames National Laboratory, Ames, Iowa 50011. United States
- Department
of Chemistry, Iowa State University, Ames, Iowa 50011. United States
| | - Javier Vela
- U.S.
Department of Energy Ames National Laboratory, Ames, Iowa 50011. United States
- Department
of Chemistry, Iowa State University, Ames, Iowa 50011. United States
| | - Aaron J. Rossini
- U.S.
Department of Energy Ames National Laboratory, Ames, Iowa 50011. United States
- Department
of Chemistry, Iowa State University, Ames, Iowa 50011. United States
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16
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Dorn RW, Carnahan SL, Cheng CY, Pan L, Hao Z, Rossini AJ. Structural characterization of tin in toothpaste by dynamic nuclear polarization enhanced 119Sn solid-state NMR spectroscopy. Nat Commun 2023; 14:7423. [PMID: 37973961 PMCID: PMC10654397 DOI: 10.1038/s41467-023-42816-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Accepted: 10/20/2023] [Indexed: 11/19/2023] Open
Abstract
Stannous fluoride (SnF2) is an effective fluoride source and antimicrobial agent that is widely used in commercial toothpaste formulations. The antimicrobial activity of SnF2 is partly attributed to the presence of Sn(II) ions. However, it is challenging to directly determine the Sn speciation and oxidation state within commercially available toothpaste products due to the low weight loading of SnF2 (0.454 wt% SnF2, 0.34 wt% Sn) and the amorphous, semi-solid nature of the toothpaste. Here, we show that dynamic nuclear polarization (DNP) enables 119Sn solid-state NMR experiments that can probe the Sn speciation within commercially available toothpaste. Solid-state NMR experiments on SnF2 and SnF4 show that 19F isotropic chemical shift and 119Sn chemical shift anisotropy (CSA) are highly sensitive to the Sn oxidation state. DNP-enhanced 119Sn magic-angle turning (MAT) 2D NMR spectra of toothpastes resolve Sn(II) and Sn(IV) by their 119Sn chemical shift tensor parameters. Fits of DNP-enhanced 1D 1H → 119Sn solid-state NMR spectra allow the populations of Sn(II) and Sn(IV) within the toothpastes to be estimated. This analysis reveals that three of the four commercially available toothpastes contained at least 80% Sn(II), whereas one of the toothpaste contained a significantly higher amount of Sn(IV).
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Affiliation(s)
- Rick W Dorn
- US Department of Energy Ames National Laboratory, Ames, IA, 50011, USA
- Department of Chemistry, Iowa State University, Ames, IA, 50011, USA
| | - Scott L Carnahan
- US Department of Energy Ames National Laboratory, Ames, IA, 50011, USA
- Department of Chemistry, Iowa State University, Ames, IA, 50011, USA
| | | | - Long Pan
- Colgate-Palmolive Company, Piscataway, NJ, 08855, USA
| | - Zhigang Hao
- Colgate-Palmolive Company, Piscataway, NJ, 08855, USA.
| | - Aaron J Rossini
- US Department of Energy Ames National Laboratory, Ames, IA, 50011, USA.
- Department of Chemistry, Iowa State University, Ames, IA, 50011, USA.
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17
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Chen PH, Gao C, Alaniva N, Björgvinsdóttir S, Pagonakis IG, Urban MA, Däpp A, Gunzenhauser R, Barnes AB. Watch-sized 12 Tesla all-high-temperature-superconducting magnet. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2023; 357:107588. [PMID: 37976810 DOI: 10.1016/j.jmr.2023.107588] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Revised: 11/06/2023] [Accepted: 11/09/2023] [Indexed: 11/19/2023]
Abstract
We demonstrate the construction of 7 Tesla and 12 Tesla all high-temperature-superconducting (HTS) magnets, small enough to fit on your wrist. The size of the magnet reduces the cost of fabrication, decreases the fringe field to permit facile siting of magnets, and decreases the stored energy of high field magnets. These small HTS-based magnets are being developed for gyrotron microwave sources for use in high-field nuclear magnetic resonance applications. The 7 Tesla and 12 Tesla magnets employ a no-insulation winding technique and are cooled to 4.2 Kelvin in a liquid helium cryostat. The 7 Tesla magnet is a single pancake coil, made of only 9.4 m of HTS tape, with an inner diameter of 8 mm and an outer diameter of 24 mm. This magnet was charged up to 1168 Amperes, generating a field of 7.3 Tesla. The 12 Tesla magnet is comprised of two pancake coils (inner diameter of 10 mm and outer diameter of 27 mm) connected in series. This magnet reached its maximum field at a current of 850 Amperes.
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Affiliation(s)
- Pin-Hui Chen
- Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 2 8093, Zürich, Switzerland.
| | - Chukun Gao
- Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 2 8093, Zürich, Switzerland
| | - Nicholas Alaniva
- Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 2 8093, Zürich, Switzerland
| | - Snædís Björgvinsdóttir
- Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 2 8093, Zürich, Switzerland
| | - Ioannis Gr Pagonakis
- Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 2 8093, Zürich, Switzerland
| | - Michael A Urban
- Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 2 8093, Zürich, Switzerland
| | - Alexander Däpp
- Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 2 8093, Zürich, Switzerland
| | - Ronny Gunzenhauser
- Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 2 8093, Zürich, Switzerland
| | - Alexander B Barnes
- Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 2 8093, Zürich, Switzerland.
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18
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Berruyer P, Lindkvist M, Gracin S, Starciuc T, Bertarello A, Busi B, Schantz S, Emsley L. Hierarchy of the Components in Spray-Dried, Protein-Excipient Particles Using DNP-Enhanced NMR Spectroscopy. Mol Pharm 2023; 20:5682-5689. [PMID: 37782000 PMCID: PMC10630941 DOI: 10.1021/acs.molpharmaceut.3c00539] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Revised: 09/12/2023] [Accepted: 09/13/2023] [Indexed: 10/03/2023]
Abstract
Protein-based drugs are becoming increasingly important, but there are challenges associated with their formulation (for example, formulating stable inhalable aerosols while maintaining the proper long-term stability of the protein). Determining the morphology of multicomponent, protein-based drug formulations is particularly challenging. Here, we use dynamic nuclear polarization (DNP) solid-state NMR spectroscopy to determine the hierarchy of components within spray-dried particles containing protein, trehalose, leucine, and trileucine. DNP NMR was applied to these formulations to assess the localization of the components within the particles. We found a consistent scheme, where trehalose and the protein are co-located within the same phase in the core of the particles and leucine and trileucine are distributed in separate phases at the surface of the particles. The description of the hierarchy of the organic components determined by DNP NMR enables the rationalization of the performance of the formulation.
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Affiliation(s)
- Pierrick Berruyer
- Institut
des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Maria Lindkvist
- Inhalation
Product Development, Pharmaceutical Technology & Development,
Operations, AstraZeneca, SE-431 83 Mölndal, Sweden
| | - Sandra Gracin
- Inhalation
Product Development, Pharmaceutical Technology & Development,
Operations, AstraZeneca, SE-431 83 Mölndal, Sweden
| | - Tatiana Starciuc
- Inhalation
Product Development, Pharmaceutical Technology & Development,
Operations, AstraZeneca, SE-431 83 Mölndal, Sweden
| | - Andrea Bertarello
- Institut
des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Baptiste Busi
- Institut
des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Staffan Schantz
- Oral
Product Development, Pharmaceutical Technology & Development,
Operations, AstraZeneca, SE-431 83 Mölndal, Sweden
| | - Lyndon Emsley
- Institut
des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
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19
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Chen Y, Mi J, Rossini AJ. A focus on detection of polymorphs by dynamic nuclear polarization solid-state nuclear magnetic resonance spectroscopy. Chem Sci 2023; 14:11296-11299. [PMID: 37886103 PMCID: PMC10599483 DOI: 10.1039/d3sc90177g] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2023] Open
Abstract
Solid-state nuclear magnetic resonance (ssNMR) spectroscopy has found increasing application as a method for quantification and structure determination of solid forms (polymorphs) of organic solids and active pharmaceutical ingredients (APIs). However, ssNMR spectroscopy suffers from low sensitivity and resolution, making it challenging to detect dilute solid forms that may be present after recrystallization or reaction with co-formers. Cousin et al. (S. F. Cousin et al., Chem. Sci., 2023, https://doi.org/10.1039/D3SC02063K) have demonstrated that dynamic nuclear polarization (DNP) enhanced 13C cross-polarization (CP) saturation recovery experiments can be used to detect dilute polymorphic forms that are present within a mixture of solid forms. Enhancement of the NMR signal by DNP and differences in signal build-up rates for different polymorphs provide the sensitivity and contrast needed to resolve NMR signals from minor polymorphic forms. This method demonstrated by Cousin et al. should aid the discovery of solid drug forms.
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Affiliation(s)
- Yunhua Chen
- Analytical Research & Development, AbbVie, Inc. North Chicago Illinois 60064 USA
| | - Jiashan Mi
- Department of Chemistry, Iowa State University Ames IA 50011 USA
| | - Aaron J Rossini
- Department of Chemistry, Iowa State University Ames IA 50011 USA
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20
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Min S, Baek J, Kim J, Jeong HJ, Chung J, Jeong K. Water-Compatible and Recyclable Heterogeneous SABRE Catalyst for NMR Signal Amplification. JACS AU 2023; 3:2912-2917. [PMID: 37885596 PMCID: PMC10598823 DOI: 10.1021/jacsau.3c00487] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Revised: 09/20/2023] [Accepted: 09/22/2023] [Indexed: 10/28/2023]
Abstract
A water-compatible and recyclable catalyst for nuclear magnetic resonance (NMR) hyperpolarization via signal amplification by reversible exchange (SABRE) was developed. The [Ir(COD)(IMes)Cl] catalyst was attached to a polymeric resin of bis(2-pyridyl)amine (heterogeneous SABRE catalyst, HET-SABRE catalyst), and it amplified the 1H NMR signal of pyridine up to (-) 4455-fold (43.2%) at 1.4 T in methanol and (-) 50-fold (0.5%) in water. These are the highest amplification factors ever reported among HET-SABRE catalysts and for the first time in aqueous media. Moreover, the HET-SABRE catalyst demonstrated recyclability by retaining its activity in water after more than three uses. This newly designed polymeric resin-based heterogeneous catalyst shows great promise for NMR signal amplification for biomedical NMR and MRI applications in the future.
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Affiliation(s)
- Sein Min
- Department
of Chemistry, Seoul Women’s University, Seoul 01797, South Korea
| | - Juhee Baek
- Department
of Chemistry, Seoul Women’s University, Seoul 01797, South Korea
| | - Jisu Kim
- Department
of Chemistry, Seoul Women’s University, Seoul 01797, South Korea
| | - Hye Jin Jeong
- Department
of Chemistry, Colorado State University, Fort Collins, Colorado 80523, United States
| | - Jean Chung
- Department
of Chemistry, Colorado State University, Fort Collins, Colorado 80523, United States
| | - Keunhong Jeong
- Department
of Chemistry, Korea Military Academy, Seoul 01805, South Korea
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21
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Pillai A, Elanchezhian M, Virtanen T, Conti S, Ajoy A. Electron-to-nuclear spectral mapping via dynamic nuclear polarization. J Chem Phys 2023; 159:154201. [PMID: 37843056 DOI: 10.1063/5.0157954] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2023] [Accepted: 08/08/2023] [Indexed: 10/17/2023] Open
Abstract
We report on a strategy to indirectly read out the spectrum of an electronic spin via polarization transfer to nuclear spins in its local environment. The nuclear spins are far more abundant and have longer lifetimes, allowing for repeated polarization accumulation in them. Subsequent nuclear interrogation can reveal information about the electronic spectral density of states. We experimentally demonstrate the method by reading out the ESR spectrum of nitrogen vacancy center electrons in diamond via readout of lattice 13C nuclei. Spin-lock control on the 13C nuclei yields a significantly enhanced signal-to-noise ratio for the nuclear readout. Spectrally mapped readout presents operational advantages in being background-free and immune to crystal orientation and optical scattering. We harness these advantages to demonstrate applications in underwater magnetometry. The physical basis for the "one-to-many" spectral map is itself intriguing. To uncover its origin, we develop a theoretical model that maps the system dynamics, involving traversal of a cascaded structure of Landau-Zener anti-crossings, to the operation of a tilted "Galton board." This work points to new opportunities for "ESR-via-NMR" in dilute electronic systems and in hybrid electron-nuclear quantum memories and sensors.
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Affiliation(s)
- Arjun Pillai
- Department of Chemistry, University of California Berkeley, Berkeley, California 94720, USA
| | - Moniish Elanchezhian
- Department of Chemistry, University of California Berkeley, Berkeley, California 94720, USA
| | - Teemu Virtanen
- Department of Chemistry, University of California Berkeley, Berkeley, California 94720, USA
| | - Sophie Conti
- Department of Chemistry, University of California Berkeley, Berkeley, California 94720, USA
| | - Ashok Ajoy
- Department of Chemistry, University of California Berkeley, Berkeley, California 94720, USA
- Lawrence Berkeley National Laboratory, Chemical Sciences Division, Berkeley, California 94720, USA
- CIFAR Azrieli Global Scholars Program, 661 University Ave, Toronto, ON M5G 1M1, Canada
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22
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Toke O. Three Decades of REDOR in Protein Science: A Solid-State NMR Technique for Distance Measurement and Spectral Editing. Int J Mol Sci 2023; 24:13637. [PMID: 37686450 PMCID: PMC10487747 DOI: 10.3390/ijms241713637] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 08/30/2023] [Accepted: 09/01/2023] [Indexed: 09/10/2023] Open
Abstract
Solid-state NMR (ss-NMR) is a powerful tool to investigate noncrystallizable, poorly soluble molecular systems, such as membrane proteins, amyloids, and cell walls, in environments that closely resemble their physical sites of action. Rotational-echo double resonance (REDOR) is an ss-NMR methodology, which by reintroducing heteronuclear dipolar coupling under magic angle spinning conditions provides intramolecular and intermolecular distance restraints at the atomic level. In addition, REDOR can be exploited as a selection tool to filter spectra based on dipolar couplings. Used extensively as a spectroscopic ruler between isolated spins in site-specifically labeled systems and more recently as a building block in multidimensional ss-NMR pulse sequences allowing the simultaneous measurement of multiple distances, REDOR yields atomic-scale information on the structure and interaction of proteins. By extending REDOR to the determination of 1H-X dipolar couplings in recent years, the limit of measurable distances has reached ~15-20 Å, making it an attractive method of choice for the study of complex biomolecular assemblies. Following a methodological introduction including the most recent implementations, examples are discussed to illustrate the versatility of REDOR in the study of biological systems.
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Affiliation(s)
- Orsolya Toke
- Laboratory for NMR Spectroscopy, Structural Research Centre, Research Centre for Natural Sciences, 2 Magyar tudósok körútja, H-1117 Budapest, Hungary
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23
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Zhao Y, El Mkami H, Hunter RI, Casano G, Ouari O, Smith GM. Large cross-effect dynamic nuclear polarisation enhancements with kilowatt inverting chirped pulses at 94 GHz. Commun Chem 2023; 6:171. [PMID: 37607991 PMCID: PMC10444895 DOI: 10.1038/s42004-023-00963-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Accepted: 07/25/2023] [Indexed: 08/24/2023] Open
Abstract
Dynamic nuclear polarisation (DNP) is a process that transfers electron spin polarisation to nuclei by applying resonant microwave radiation, and has been widely used to improve the sensitivity of nuclear magnetic resonance (NMR). Here we demonstrate new levels of performance for static cross-effect proton DNP using high peak power chirped inversion pulses at 94 GHz to create a strong polarisation gradient across the inhomogeneously broadened line of the mono-radical 4-amino TEMPO. Enhancements of up to 340 are achieved at an average power of a few hundred mW, with fast build-up times (3 s). Experiments are performed using a home-built wideband kW pulsed electron paramagnetic resonance (EPR) spectrometer operating at 94 GHz, integrated with an NMR detection system. Simultaneous DNP and EPR characterisation of other mono-radicals and biradicals, as a function of temperature, leads to additional insights into limiting relaxation mechanisms and give further motivation for the development of wideband pulsed amplifiers for DNP at higher frequencies.
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Affiliation(s)
- Yujie Zhao
- School of Physics and Astronomy, University of St Andrews, KY16 9SS, Fife, Scotland
| | - Hassane El Mkami
- School of Physics and Astronomy, University of St Andrews, KY16 9SS, Fife, Scotland
| | - Robert I Hunter
- School of Physics and Astronomy, University of St Andrews, KY16 9SS, Fife, Scotland
| | - Gilles Casano
- Aix Marseille University, CNRS, ICR, UMR 7273, F-13013, Marseille, France
| | - Olivier Ouari
- Aix Marseille University, CNRS, ICR, UMR 7273, F-13013, Marseille, France
| | - Graham M Smith
- School of Physics and Astronomy, University of St Andrews, KY16 9SS, Fife, Scotland.
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24
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Quan Y, Ouyang Y, Mardini M, Palani RS, Banks D, Kempf J, Wenckebach WT, Griffin RG. Resonant Mixing Dynamic Nuclear Polarization. J Phys Chem Lett 2023; 14:7007-7013. [PMID: 37523253 DOI: 10.1021/acs.jpclett.3c01869] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/02/2023]
Abstract
We propose a mechanism for dynamic nuclear polarization that is different from the well-known Overhauser effect, solid effect, cross effect, and thermal mixing processes. We term it Resonant Mixing (RM), and we show that it arises from the evolution of the density matrix for a simple electron-nucleus coupled spin pair subject to weak microwave irradiation, the same interactions as the solid effect. However, the SE is optimal when the microwave field is off-resonance, whereas RM is optimal when the microwave field is on-resonance and involves the mixing of states by the microwave field together with the electron-nuclear coupling. Finally, we argue that this mechanism is responsible for the observed dispersive-shaped DNP field profile for trityl samples near the electron paramagnetic resonance center.
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Affiliation(s)
- Yifan Quan
- Francis Bitter Magnet Laboratory and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Yifu Ouyang
- Francis Bitter Magnet Laboratory and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Michael Mardini
- Francis Bitter Magnet Laboratory and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Ravi Shankar Palani
- Francis Bitter Magnet Laboratory and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Daniel Banks
- Bruker Biospin, 15 Fortune Drive, Billerica, Massachusetts 01821, United States
| | - James Kempf
- Bruker Biospin, 15 Fortune Drive, Billerica, Massachusetts 01821, United States
| | - W Tom Wenckebach
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
- National High Magnetic Field Laboratory, University of Florida, Gainesville, Florida 32310, United States
| | - Robert G Griffin
- Francis Bitter Magnet Laboratory and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
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25
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Jeon J, Yau WM, Tycko R. Early events in amyloid-β self-assembly probed by time-resolved solid state NMR and light scattering. Nat Commun 2023; 14:2964. [PMID: 37221174 DOI: 10.1038/s41467-023-38494-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Accepted: 05/04/2023] [Indexed: 05/25/2023] Open
Abstract
Self-assembly of amyloid-β peptides leads to oligomers, protofibrils, and fibrils that are likely instigators of neurodegeneration in Alzheimer's disease. We report results of time-resolved solid state nuclear magnetic resonance (ssNMR) and light scattering experiments on 40-residue amyloid-β (Aβ40) that provide structural information for oligomers that form on time scales from 0.7 ms to 1.0 h after initiation of self-assembly by a rapid pH drop. Low-temperature ssNMR spectra of freeze-trapped intermediates indicate that β-strand conformations within and contacts between the two main hydrophobic segments of Aβ40 develop within 1 ms, while light scattering data imply a primarily monomeric state up to 5 ms. Intermolecular contacts involving residues 18 and 33 develop within 0.5 s, at which time Aβ40 is approximately octameric. These contacts argue against β-sheet organizations resembling those found previously in protofibrils and fibrils. Only minor changes in the Aβ40 conformational distribution are detected as larger assemblies develop.
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Affiliation(s)
- Jaekyun Jeon
- Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, 20892-0520, USA
- Institute for Bioscience and Biotechnology Research, University of Maryland/National Institute of Standards and Technology, Rockville, MD, 20850, USA
| | - Wai-Ming Yau
- Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, 20892-0520, USA
| | - Robert Tycko
- Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, 20892-0520, USA.
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26
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Quan Y, Subramanya MVH, Ouyang Y, Mardini M, Dubroca T, Hill S, Griffin RG. Coherent Dynamic Nuclear Polarization using Chirped Pulses. J Phys Chem Lett 2023; 14:4748-4753. [PMID: 37184391 DOI: 10.1021/acs.jpclett.3c00726] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
This paper presents a study of coherent dynamic nuclear polarization (DNP) using frequency swept pulses at 94 GHz which optimize the polarization transfer efficiency. Accordingly, an enhancement ε ∼ 496 was observed using 10 mM trityl-OX063 as the polarizing agent in a standard 6:3:1 d8-glycerol/D2O/H2O glassing matrix at 70 K. At present, this is the largest DNP enhancement reported at this microwave frequency and temperature. Furthermore, the frequency swept pulses enhance the nuclear magnetic resonance (NMR) signal and reduce the recycle delay, accelerating the NMR signal acquisition.
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Affiliation(s)
- Yifan Quan
- Francis Bitter Magnet Laboratory and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Manoj V H Subramanya
- National High Magnetic Field Laboratory, Tallahassee, Florida 32310, United States
- Department of Physics, Florida State University, Tallahassee, Florida 32310, United States
| | - Yifu Ouyang
- Francis Bitter Magnet Laboratory and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Michael Mardini
- Francis Bitter Magnet Laboratory and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Thierry Dubroca
- National High Magnetic Field Laboratory, Tallahassee, Florida 32310, United States
| | - Stephen Hill
- National High Magnetic Field Laboratory, Tallahassee, Florida 32310, United States
- Department of Physics, Florida State University, Tallahassee, Florida 32310, United States
| | - Robert G Griffin
- Francis Bitter Magnet Laboratory and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
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27
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Perras FA, Matsuki Y, Southern SA, Dubroca T, Flesariu DF, Van Tol J, Constantinides CP, Koutentis PA. Mechanistic origins of methyl-driven Overhauser DNP. J Chem Phys 2023; 158:154201. [PMID: 37093991 DOI: 10.1063/5.0149664] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Accepted: 03/31/2023] [Indexed: 04/26/2023] Open
Abstract
The Overhauser effect in the dynamic nuclear polarization (DNP) of non-conducting solids has drawn much attention due to the potential for efficient high-field DNP as well as a general interest in the underlying principles that enable the Overhauser effect in small molecules. We recently reported the observation of 1H and 2H Overhauser effects in H3C- or D3C-functionalized Blatter radical analogs, which we presumed to be caused by methyl rotation. In this work, we look at the mechanism for methyl-driven Overhauser DNP in greater detail, considering methyl librations and tunneling in addition to classical rotation. We predict the temperature dependence of these mechanisms using density functional theory and spin dynamics simulations. Comparisons with results from ultralow-temperature magic angle spinning-DNP experiments revealed that cross-relaxation at temperatures above 60 K originates from both libration and rotation, while librations dominate at lower temperatures. Due to the zero-point vibrational nature of these motions, they are not quenched by very low temperatures, and methyl-driven Overhauser DNP is expected to increase in efficiency down to 0 K, predominantly due to increases in nuclear relaxation times.
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Affiliation(s)
- Frédéric A Perras
- Chemical and Biological Sciences Division, Ames National Laboratory, Ames, Iowa 50011, USA
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, USA
| | - Yoh Matsuki
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, USA
- Institute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan
| | - Scott A Southern
- Chemical and Biological Sciences Division, Ames National Laboratory, Ames, Iowa 50011, USA
| | - Thierry Dubroca
- National High Magnetic Field Laboratory, Florida State University, Tallahassee, Florida 32310, USA
| | - Dragos F Flesariu
- Department of Chemistry, University of Cyprus, P.O. Box 20537, 1678 Nicosia, Cyprus
| | - Johan Van Tol
- National High Magnetic Field Laboratory, Florida State University, Tallahassee, Florida 32310, USA
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28
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Jeong HJ, Min S, Baek J, Kim J, Chung J, Jeong K. Real-Time Reaction Monitoring of Azide-Alkyne Cycloadditions Using Benchtop NMR-Based Signal Amplification by Reversible Exchange (SABRE). ACS MEASUREMENT SCIENCE AU 2023; 3:134-142. [PMID: 37090259 PMCID: PMC10120034 DOI: 10.1021/acsmeasuresciau.2c00065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Revised: 12/30/2022] [Accepted: 01/03/2023] [Indexed: 05/03/2023]
Abstract
Rufinamide, possessing a triazole ring, is a new antiepileptic drug (AED) relatively well-absorbed in the lower dose range (10 mg/kg per day) and is currently being used in antiepileptic medications. Triazole derivatives can interact with various enzymes and receptors in biological systems via diverse non-covalent interactions, thus inducing versatile biological effects. Strain-promoted azide-alkyne cycloaddition (SPAAC) is a significant method for obtaining triazoles, even under physiological conditions, in the absence of a copper catalyst. To confirm the progress of chemical reactions under biological conditions, research on reaction monitoring at low concentrations is essential. This promising strategy is gaining acceptance for applications in fields such as drug development and nanoscience. We investigated the optimum Ir catalyst and magnetic field for achieving maximum proton hyperpolarization transfer in triazole derivatives. These reactions were analyzed using signal amplification by reversible exchange (SABRE) to overcome the limitations of low sensitivity in nuclear magnetic resonance spectroscopy, when monitoring copper-free click reactions in real time. Finally, a more versatile copper-catalyzed click reaction was monitored in real time, using a 60 MHz benchtop NMR system, in order to analyze the reaction mechanism.
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Affiliation(s)
- Hye Jin Jeong
- Department
of Chemistry, Colorado State University, Fort Collins, Colorado 80523, United States
| | - Sein Min
- Department
of Chemistry, Seoul Women’s University, Seoul 01797, South Korea
| | - Juhee Baek
- Department
of Chemistry, Seoul Women’s University, Seoul 01797, South Korea
| | - Jisu Kim
- Department
of Chemistry, Seoul Women’s University, Seoul 01797, South Korea
| | - Jean Chung
- Department
of Chemistry, Colorado State University, Fort Collins, Colorado 80523, United States
| | - Keunhong Jeong
- Department
of Physics and Chemistry, Korea Military
Academy, Seoul 01805, South Korea
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29
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Munuera-Javaloy C, Tobalina A, Casanova J. High-Resolution NMR Spectroscopy at Large Fields with Nitrogen Vacancy Centers. PHYSICAL REVIEW LETTERS 2023; 130:133603. [PMID: 37067301 DOI: 10.1103/physrevlett.130.133603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Accepted: 03/15/2023] [Indexed: 06/19/2023]
Abstract
Ensembles of nitrogen-vacancy (NV) centers are used as sensors to detect nuclear magnetic resonance signals from micron-sized samples at room temperature. In this scenario, the regime of large magnetic fields is especially interesting as it leads to a large nuclear thermal polarization-thus, to a strong sensor response even in low concentration samples-while chemical shifts and J couplings become more accessible. Nevertheless, this regime remains largely unexplored owing to the difficulties of coupling NV-based sensors with high-frequency nuclear signals. In this Letter, we circumvent this problem with a method that maps the relevant energy shifts in the amplitude of an induced nuclear spin signal that is subsequently transferred to the sensor. This stage is interspersed with free-precession periods of the sample nuclear spins where the sensor does not participate. Thus, our method leads to high spectral resolutions ultimately limited by the coherence of the nuclear spin signal.
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Affiliation(s)
- C Munuera-Javaloy
- Department of Physical Chemistry, University of the Basque Country UPV/EHU, Apartado 644, 48080 Bilbao, Spain
- EHU Quantum Center, University of the Basque Country UPV/EHU, Leioa, Spain
| | - A Tobalina
- Department of Physical Chemistry, University of the Basque Country UPV/EHU, Apartado 644, 48080 Bilbao, Spain
- EHU Quantum Center, University of the Basque Country UPV/EHU, Leioa, Spain
| | - J Casanova
- Department of Physical Chemistry, University of the Basque Country UPV/EHU, Apartado 644, 48080 Bilbao, Spain
- EHU Quantum Center, University of the Basque Country UPV/EHU, Leioa, Spain
- IKERBASQUE, Basque Foundation for Science, Plaza Euskadi 5, 48009 Bilbao, Spain
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30
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Volkov A, Mi J, Lalit K, Chatterjee P, Jing D, Carnahan SL, Chen Y, Sun S, Rossini AJ, Huang W, Stanley LM. General Strategy for Incorporation of Functional Group Handles into Covalent Organic Frameworks via the Ugi Reaction. J Am Chem Soc 2023; 145:6230-6239. [PMID: 36892967 DOI: 10.1021/jacs.2c12440] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/10/2023]
Abstract
The library of imine-linked covalent organic frameworks (COFs) has grown significantly over the last two decades, featuring a variety of morphologies, pore sizes, and applications. An array of synthetic methods has been developed to expand the scope of the COF functionalities; however, most of these methods were designed to introduce functional scaffolds tailored to a specific application. Having a general approach to diversify COFs via late-stage incorporation of functional group handles would greatly facilitate the transformation of these materials into platforms for a variety of useful applications. Herein, we report a general strategy to introduce functional group handles in COFs via the Ugi multicomponent reaction. To demonstrate the versatility of this approach, we have synthesized two COFs with hexagonal and kagome morphologies. We then introduced azide, alkyne, and vinyl functional groups, which could be readily utilized for a variety of post-synthetic modifications. This facile approach enables the functionalization of any COFs containing imine linkages.
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Affiliation(s)
- Alexander Volkov
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
- U.S. Department of Energy, Ames National Laboratory, Ames, Iowa 50011, United States
| | - Jiashan Mi
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
- U.S. Department of Energy, Ames National Laboratory, Ames, Iowa 50011, United States
| | - Kanika Lalit
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
- U.S. Department of Energy, Ames National Laboratory, Ames, Iowa 50011, United States
| | - Puranjan Chatterjee
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
- U.S. Department of Energy, Ames National Laboratory, Ames, Iowa 50011, United States
| | - Dapeng Jing
- Materials Analysis and Research Laboratory, Iowa State University, Ames, Iowa 50011, United States
| | - Scott L Carnahan
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
- U.S. Department of Energy, Ames National Laboratory, Ames, Iowa 50011, United States
| | - Yunhua Chen
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
- U.S. Department of Energy, Ames National Laboratory, Ames, Iowa 50011, United States
| | - Simin Sun
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
- U.S. Department of Energy, Ames National Laboratory, Ames, Iowa 50011, United States
| | - Aaron J Rossini
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
- U.S. Department of Energy, Ames National Laboratory, Ames, Iowa 50011, United States
| | - Wenyu Huang
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
- U.S. Department of Energy, Ames National Laboratory, Ames, Iowa 50011, United States
| | - Levi M Stanley
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
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31
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Thomas B, Jardón-Álvarez D, Carmieli R, van Tol J, Leskes M. The Effect of Disorder on Endogenous MAS-DNP: Study of Silicate Glasses and Crystals. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2023; 127:4759-4772. [PMID: 36925559 PMCID: PMC10009812 DOI: 10.1021/acs.jpcc.2c08849] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/18/2022] [Revised: 02/05/2023] [Indexed: 06/18/2023]
Abstract
In dynamic nuclear polarization nuclear magnetic resonance (DNP-NMR) experiments, the large Boltzmann polarization of unpaired electrons is transferred to surrounding nuclei, leading to a significant increase in the sensitivity of the NMR signal. In order to obtain large polarization gains in the bulk of inorganic samples, paramagnetic metal ions are introduced as minor dopants acting as polarizing agents. While this approach has been shown to be very efficient in crystalline inorganic oxides, significantly lower enhancements have been reported when applying this approach to oxide glasses. In order to rationalize the origin of the difference in the efficiency of DNP in amorphous and crystalline inorganic matrices, we performed a detailed comparison in terms of their magnetic resonance properties. To diminish differences in the DNP performance arising from distinct nuclear interactions, glass and crystal systems of similar compositions were chosen, Li2OCaO·2SiO2 and Li2CaSiO4, respectively. Using Gd(III) as polarizing agent, DNP provided signal enhancements in the range of 100 for the crystalline sample, while only up to around factor 5 in the glass, for both 6Li and 29Si nuclei. We find that the drop in enhancement in glasses can be attributed to three main factors: shorter nuclear and electron relaxation times as well as the dielectric properties of glass and crystal. The amorphous nature of the glass sample is responsible for a high dielectric loss, leading to efficient microwave absorption and consequently lower effective microwave power and an increase in sample temperature which leads to further reduction of the electron relaxation time. These results help rationalize the observed sensitivity enhancements and provide guidance in identifying materials that could benefit from the DNP approach.
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Affiliation(s)
- Brijith Thomas
- Department
of Molecular Chemistry & Materials Science, Weizmann Institute of Science, Rehovot 76100, Israel
| | - Daniel Jardón-Álvarez
- Department
of Molecular Chemistry & Materials Science, Weizmann Institute of Science, Rehovot 76100, Israel
| | - Raanan Carmieli
- Department
of Chemical Research Support, Weizmann Institute
of Science, Rehovot 76100, Israel
| | - Johan van Tol
- National
High Magnetic Field Laboratory, Florida
State University, Tallahassee, Florida 32310, United States
| | - Michal Leskes
- Department
of Molecular Chemistry & Materials Science, Weizmann Institute of Science, Rehovot 76100, Israel
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32
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Southern SA, Liu DJ, Chatterjee P, Li Y, Perras FA. 1H chemical shift anisotropy: a high sensitivity solid-state NMR dynamics probe for surface studies? Phys Chem Chem Phys 2023; 25:5348-5360. [PMID: 36399032 DOI: 10.1039/d2cp04406d] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Dynamics play significant roles in chemistry and biochemistry-molecular motions impact both large- and small-scale chemical reactions in addition to biochemical processes. In many systems, including heterogeneous catalysts, the characterization of dynamics remains a challenge. The most common approaches involve the solid-state NMR measurement of anisotropic interactions, in particular 2H quadrupolar coupling and 1H-X dipolar coupling, which generally require isotope enrichment. Due to the high sensitivity of 1H NMR, 1H chemical shift anisotropy (CSA) is a particularly enticing, and underexplored, dynamics probe. We carried out 1H CSA and 1H-13C dipolar coupling measurements in a series of model supported complexes to understand how 1H CSA can be leveraged to gain dynamic information for heterogeneous catalysts. Mathematical descriptions are given for the dynamic averaging of the CSA tensor, and its dependence on orientation and asymmetry. The variability of the orientation of the tensor in the molecular frame, in addition to its magnitude and asymmetry, negatively impacts attempts to extract quantitative dynamic information. Nevertheless, 1H CSA measurements can reveal useful qualitative insights into the motions of a particularly dilute site, such as from a surface species.
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Affiliation(s)
- Scott A Southern
- Division of Chemical and Biological Sciences, Ames National Laboratory, Ames, IA 50014, USA.
| | - Da-Jiang Liu
- Division of Chemical and Biological Sciences, Ames National Laboratory, Ames, IA 50014, USA.
| | - Puranjan Chatterjee
- Division of Chemical and Biological Sciences, Ames National Laboratory, Ames, IA 50014, USA. .,Department of Chemistry, Iowa State University, Ames, IA 50014, USA
| | - Yuting Li
- Division of Chemical and Biological Sciences, Ames National Laboratory, Ames, IA 50014, USA.
| | - Frédéric A Perras
- Division of Chemical and Biological Sciences, Ames National Laboratory, Ames, IA 50014, USA.
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33
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Saul P, Schröder L, Schmidt AB, Hövener JB. Nanomaterials for hyperpolarized nuclear magnetic resonance and magnetic resonance imaging. WILEY INTERDISCIPLINARY REVIEWS. NANOMEDICINE AND NANOBIOTECHNOLOGY 2023:e1879. [PMID: 36781151 DOI: 10.1002/wnan.1879] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Revised: 01/03/2023] [Accepted: 01/07/2023] [Indexed: 02/15/2023]
Abstract
Nanomaterials play an important role in the development and application of hyperpolarized materials for magnetic resonance imaging (MRI). In this context they can not only act as hyperpolarized materials which are directly imaged but also play a role as carriers for hyperpolarized gases and catalysts for para-hydrogen induced polarization (PHIP) to generate hyperpolarized substrates for metabolic imaging. Those three application possibilities are discussed, focusing on carbon-based materials for the directly imaged particles. An overview over recent developments in all three fields is given, including the early developments in each field as well as important steps towards applications in MRI, such as making the initially developed methods more biocompatible and first imaging experiments with spatial resolution in either phantoms or in vivo studies. Focusing on the important features nanomaterials need to display to be applicable in the MRI context, a wide range of different approaches to that extent is covered, giving the reader a general idea of different possibilities as well as recent developments in those different fields of hyperpolarized magnetic resonance. This article is categorized under: Therapeutic Approaches and Drug Discovery > Emerging Technologies Diagnostic Tools > In Vivo Nanodiagnostics and Imaging.
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Affiliation(s)
- Philip Saul
- Section Biomedical Imaging, Molecular Imaging North Competence Center (MOIN CC), Department of Radiology and Neuroradiology, University Medical Center Schleswig-Holstein, Kiel University, Kiel, Germany
| | - Leif Schröder
- Division of Translational Molecular Imaging, Deutsches Krebsforschungszentrum (DKFZ), Heidelberg, Germany.,Molecular Imaging, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Berlin, Germany
| | - Andreas B Schmidt
- Intergrative Biosciences (Ibio), Department of Chemistry, Karmanos Cancer Institute (KCI), Wayne State University, Detroit, Michigan, USA.,German Cancer Consortium (DKTK), Partner Site Freiburg, German Cancer Research Center (DKFZ), Heidelberg, Germany.,Division of Medical Physics, Department of Radiology, Medical Center, University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Jan-Bernd Hövener
- Section Biomedical Imaging, Molecular Imaging North Competence Center (MOIN CC), Department of Radiology and Neuroradiology, University Medical Center Schleswig-Holstein, Kiel University, Kiel, Germany
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34
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Quan Y, Niketic N, Steiner JM, Eichhorn TR, Tom Wenckebach W, Hautle P. General theory of light propagation and triplet generation for studies of spin dynamics and triplet dynamic nuclear polarisation. Mol Phys 2023. [DOI: 10.1080/00268976.2023.2169025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- Yifan Quan
- Laboratory for Neutron and Muon Instrumentation (LIN), Paul Scherrer Institute, Villigen PSI, Switzerland
| | - Nemanja Niketic
- Laboratory for Neutron and Muon Instrumentation (LIN), Paul Scherrer Institute, Villigen PSI, Switzerland
| | - Jakob M. Steiner
- Laboratory for Neutron and Muon Instrumentation (LIN), Paul Scherrer Institute, Villigen PSI, Switzerland
- NVision Imaging Technologies GmbH, Ulm, Germany
| | - Tim R. Eichhorn
- Laboratory for Neutron and Muon Instrumentation (LIN), Paul Scherrer Institute, Villigen PSI, Switzerland
| | - W. Tom Wenckebach
- Laboratory for Neutron and Muon Instrumentation (LIN), Paul Scherrer Institute, Villigen PSI, Switzerland
- National High Magnetic Field Laboratory, University of Florida, Gainesville, FL, USA
| | - Patrick Hautle
- Laboratory for Neutron and Muon Instrumentation (LIN), Paul Scherrer Institute, Villigen PSI, Switzerland
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35
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Eills J, Budker D, Cavagnero S, Chekmenev EY, Elliott SJ, Jannin S, Lesage A, Matysik J, Meersmann T, Prisner T, Reimer JA, Yang H, Koptyug IV. Spin Hyperpolarization in Modern Magnetic Resonance. Chem Rev 2023; 123:1417-1551. [PMID: 36701528 PMCID: PMC9951229 DOI: 10.1021/acs.chemrev.2c00534] [Citation(s) in RCA: 45] [Impact Index Per Article: 45.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Magnetic resonance techniques are successfully utilized in a broad range of scientific disciplines and in various practical applications, with medical magnetic resonance imaging being the most widely known example. Currently, both fundamental and applied magnetic resonance are enjoying a major boost owing to the rapidly developing field of spin hyperpolarization. Hyperpolarization techniques are able to enhance signal intensities in magnetic resonance by several orders of magnitude, and thus to largely overcome its major disadvantage of relatively low sensitivity. This provides new impetus for existing applications of magnetic resonance and opens the gates to exciting new possibilities. In this review, we provide a unified picture of the many methods and techniques that fall under the umbrella term "hyperpolarization" but are currently seldom perceived as integral parts of the same field. Specifically, before delving into the individual techniques, we provide a detailed analysis of the underlying principles of spin hyperpolarization. We attempt to uncover and classify the origins of hyperpolarization, to establish its sources and the specific mechanisms that enable the flow of polarization from a source to the target spins. We then give a more detailed analysis of individual hyperpolarization techniques: the mechanisms by which they work, fundamental and technical requirements, characteristic applications, unresolved issues, and possible future directions. We are seeing a continuous growth of activity in the field of spin hyperpolarization, and we expect the field to flourish as new and improved hyperpolarization techniques are implemented. Some key areas for development are in prolonging polarization lifetimes, making hyperpolarization techniques more generally applicable to chemical/biological systems, reducing the technical and equipment requirements, and creating more efficient excitation and detection schemes. We hope this review will facilitate the sharing of knowledge between subfields within the broad topic of hyperpolarization, to help overcome existing challenges in magnetic resonance and enable novel applications.
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Affiliation(s)
- James Eills
- Institute
for Bioengineering of Catalonia, Barcelona
Institute of Science and Technology, 08028Barcelona, Spain,
| | - Dmitry Budker
- Johannes
Gutenberg-Universität Mainz, 55128Mainz, Germany,Helmholtz-Institut,
GSI Helmholtzzentrum für Schwerionenforschung, 55128Mainz, Germany,Department
of Physics, UC Berkeley, Berkeley, California94720, United States
| | - Silvia Cavagnero
- Department
of Chemistry, University of Wisconsin, Madison, Madison, Wisconsin53706, United States
| | - Eduard Y. Chekmenev
- Department
of Chemistry, Integrative Biosciences (IBio), Karmanos Cancer Institute
(KCI), Wayne State University, Detroit, Michigan48202, United States,Russian
Academy of Sciences, Moscow119991, Russia
| | - Stuart J. Elliott
- Molecular
Sciences Research Hub, Imperial College
London, LondonW12 0BZ, United Kingdom
| | - Sami Jannin
- Centre
de RMN à Hauts Champs de Lyon, Université
de Lyon, CNRS, ENS Lyon, Université Lyon 1, 69100Villeurbanne, France
| | - Anne Lesage
- Centre
de RMN à Hauts Champs de Lyon, Université
de Lyon, CNRS, ENS Lyon, Université Lyon 1, 69100Villeurbanne, France
| | - Jörg Matysik
- Institut
für Analytische Chemie, Universität
Leipzig, Linnéstr. 3, 04103Leipzig, Germany
| | - Thomas Meersmann
- Sir
Peter Mansfield Imaging Centre, University Park, School of Medicine, University of Nottingham, NottinghamNG7 2RD, United Kingdom
| | - Thomas Prisner
- Institute
of Physical and Theoretical Chemistry and Center of Biomolecular Magnetic
Resonance, Goethe University Frankfurt, , 60438Frankfurt
am Main, Germany
| | - Jeffrey A. Reimer
- Department
of Chemical and Biomolecular Engineering, UC Berkeley, and Materials Science Division, Lawrence Berkeley National
Laboratory, Berkeley, California94720, United States
| | - Hanming Yang
- Department
of Chemistry, University of Wisconsin, Madison, Madison, Wisconsin53706, United States
| | - Igor V. Koptyug
- International Tomography Center, Siberian
Branch of the Russian Academy
of Sciences, 630090Novosibirsk, Russia,
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36
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Altenhof AR, Mason H, Schurko RW. DESPERATE: A Python library for processing and denoising NMR spectra. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2023; 346:107320. [PMID: 36470176 DOI: 10.1016/j.jmr.2022.107320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Revised: 10/04/2022] [Accepted: 10/20/2022] [Indexed: 06/17/2023]
Abstract
NMR spectroscopy is an inherently insensitive technique with respect to the amount of observable signal. A common element in all NMR spectra is random thermal noise that is often characterized by a signal-to-noise ratio (SNR). SNR can be generically improved experimentally with repetitive signal averaging or during post-processing with apodization; the former of which often results in long experimental times and the latter results in the loss of spectral resolution. Denoising techniques can instead be used during post-processing to enhance SNR without compromising resolution. The most common approach relies on the singular-value decomposition (SVD) to discard noisy components of NMR data. SVD-based approaches work well, such as Cadzow and PCA, but are computationally expensive when used for large datasets that are often encountered in NMR (e.g., Carr-Purcell/Meiboom-Gill and nD datasets). Herein, we describe the implementation of a new wavelet transform (WT) routine for the fast and robust denoising of 1D and 2D NMR spectra. Several simulated and experimental datasets are denoised with both SVD-based Cadzow or PCA and WT's, and the resulting SNR enhancements and spectral uniformity are compared. WT denoising offers similar and improved denoising compared with SVD and operates faster by several orders-of-magnitude in some cases. All denoising and processing routines used in this work are included in a free and open-source Python library called DESPERATE.
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Affiliation(s)
- Adam R Altenhof
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL 32306, USA; National High Magnetic Field Laboratory, 1800 East Paul Dirac Drive, Tallahassee, FL 32310, USA
| | - Harris Mason
- Chemistry Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA.
| | - Robert W Schurko
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL 32306, USA; National High Magnetic Field Laboratory, 1800 East Paul Dirac Drive, Tallahassee, FL 32310, USA.
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37
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McCoy KM, Fritzsching KJ, McDermott AE. GTP-Bound Escherichia coli FtsZ Filaments Are Composed of Tense Monomers: a Dynamic Nuclear Polarization-Nuclear Magnetic Resonance Study Using Interface Detection. mBio 2022; 13:e0235822. [PMID: 36214571 PMCID: PMC9765660 DOI: 10.1128/mbio.02358-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Accepted: 09/08/2022] [Indexed: 11/20/2022] Open
Abstract
FtsZ filaments are the major structural component of the bacterial Z ring and are drivers of bacterial division. Crystal structures for FtsZ from some Gram-positive bacteria in the presence of GTP analogs suggest the possibility of a high-energy, "tense" conformation. It remains important to elucidate whether this tense form is the dominant form in filaments. Using dynamic nuclear polarization (DNP) solid-state nuclear magnetic resonance (NMR) and differential isotopic labeling, we directly detected residues located at the intermonomer interface of GTP-bound wild-type (WT) Escherichia coli FtsZ filaments. We combined chemical shift prediction, homology modeling, and heteronuclear dipolar recoupling techniques to characterize the E. coli FtsZ filament interface and demonstrated that the monomers in active filaments assume a tense conformation. IMPORTANCE Bacterial replication is dependent on the cytoskeletal protein FtsZ, which forms filaments that scaffold and recruit other essential division proteins. While the FtsZ monomer is well studied across organisms, many questions remain about how the filaments form and function. Recently, a second monomer form was identified in Staphylococcus aureus that has far-reaching implications for FtsZ structure and function. However, to date, this form has not been directly observed outside S. aureus. In this study, we used solid-state NMR and dynamic nuclear polarization (DNP) to directly study the filaments of E. coli FtsZ to demonstrate that E. coli FtsZ filaments are primarily composed of this second, "tense" form of the monomer. This work is the first time GTP-bound, wild-type FtsZ filaments have been studied directly at atomic resolution and is an important step forward for the study of FtsZ filaments.
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Affiliation(s)
- Kelsey M. McCoy
- Department of Chemistry, Columbia University, New York, New York, USA
| | | | - Ann E. McDermott
- Department of Chemistry, Columbia University, New York, New York, USA
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38
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Geometrization for Energy Levels of Isotropic Hyperfine Hamiltonian Block and Related Central Spin Problems for an Arbitrarily Complex Set of Spin-1/2 Nuclei. Int J Mol Sci 2022; 23:ijms232315199. [PMID: 36499535 PMCID: PMC9739289 DOI: 10.3390/ijms232315199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Revised: 11/20/2022] [Accepted: 11/29/2022] [Indexed: 12/12/2022] Open
Abstract
Description of interacting spin systems relies on understanding the spectral properties of the corresponding spin Hamiltonians. However, the eigenvalue problems arising here lead to algebraic problems too complex to be analytically tractable. This is already the case for the simplest nontrivial (Kmax−1) block for an isotropic hyperfine Hamiltonian for a radical with spin-12 nuclei, where n nuclei produce an n-th order algebraic equation with n independent parameters. Systems described by such blocks are now physically realizable, e.g., as radicals or radical pairs with polarized nuclear spins, appear as closed subensembles in more general radical settings, and have numerous counterparts in related central spin problems. We provide a simple geometrization of energy levels in this case: given n spin-12 nuclei with arbitrary positive couplings ai, take an n-dimensional hyper-ellipsoid with semiaxes ai, stretch it by a factor of n+1 along the spatial diagonal (1, 1, …, 1), read off the semiaxes of thus produced new hyper-ellipsoid qi, augment the set {qi} with q0=0, and obtain the sought n+1 energies as Ek=−12qk2+14∑iai. This procedure provides a way of seeing things that can only be solved numerically, giving a useful tool to gain insights that complement the numeric simulations usually inevitable here, and shows an intriguing connection to discrete Fourier transform and spectral properties of standard graphs.
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39
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Shimon D, Cantwell K, Joseph L, Ramanathan C. Room temperature DNP of diamond powder using frequency modulation. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2022; 122:101833. [PMID: 36209552 DOI: 10.1016/j.ssnmr.2022.101833] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2022] [Revised: 09/15/2022] [Accepted: 09/21/2022] [Indexed: 06/16/2023]
Abstract
Dynamic nuclear polarization (DNP) is a method of enhancing NMR signals via the transfer of polarization from electron spins to nuclear spins using microwave (MW) irradiation. In most cases, monochromatic continuous-wave (MCW) MW irradiation is used. Recently, several groups have shown that frequency modulation of the MW irradiation can result in an additional increase in DNP enhancement above that obtained with MCW. The effect of frequency modulation on the solid effect (SE) and the cross effect (CE) has previously been studied using the stable organic radical 4-hydroxy TEMPO (TEMPOL) at temperatures under 20 K. Here, in addition to the SE and CE, we discuss the effect of frequency modulation on the Overhauser effect (OE) and the truncated CE (tCE) in the room-temperature 13C-DNP of diamond powders. We recently showed that diamond powders can exhibit multiple DNP mechanisms simultaneously due to the heterogeneity of P1 (substitutional nitrogen) environments within diamond crystallites. We explore how the two parameters that define the frequency modulation: (i) the Modulation frequency, fm (how fast the microwave frequency is varied) and (ii) the Modulation amplitude, Δω (the magnitude of the change in microwave frequency) influence the enhancement obtained via each mechanism. Frequency modulation during DNP not only allows us to improve DNP enhancement, but also gives us a way to control which DNP mechanism is most active. By choosing the appropriate modulation parameters, we can selectively enhance some mechanisms while simultaneously suppressing others.
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Affiliation(s)
- Daphna Shimon
- Institute of Chemistry, The Hebrew University of Jerusalem, Edmond J. Safra, Givat Ram, Jerusalem, 9190401, Israel.
| | - Kelly Cantwell
- Department of Physics and Astronomy, Dartmouth College, Hanover, NH, 03755, USA
| | - Linta Joseph
- Department of Physics and Astronomy, Dartmouth College, Hanover, NH, 03755, USA
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40
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Mentink-Vigier F, Eddy S, Gullion T. MAS-DNP enables NMR studies of insect wings. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2022; 122:101838. [PMID: 36410100 PMCID: PMC9722638 DOI: 10.1016/j.ssnmr.2022.101838] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Revised: 11/11/2022] [Accepted: 11/12/2022] [Indexed: 06/16/2023]
Abstract
NMR is a valuable tool for studying insects. Solid-state NMR has been used to obtain the chemical composition and gain insight into the sclerotization process of exoskeletons. There is typically little difficulty in obtaining sufficient sample quantity for exoskeletons. However, obtaining enough sample of other insect components for solid-state NMR experiments can be problematic while isotopically enriching them is near impossible. This is especially the case for insect wing membranes which is of interest to us. Issues with obtaining sufficient sample are the thickness of wing membranes is on the order of microns, each membrane region is surrounded by veins and occupies a small area, and the membranes are separated from the wing by physical dissection. Accordingly, NMR signal enhancement methods are needed. MAS-DNP has a track record of providing significant signal enhancements for a wide variety of materials. Here we demonstrate that MAS-DNP is useful for providing high quality one-dimensional and two-dimensional solid-state NMR spectra on cicada wing membrane at natural isotopic abundance.
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Affiliation(s)
- Frédéric Mentink-Vigier
- CIMAR/NMR National High Magnetic Field Laboratory, 1800 E. Paul Dirac Drive, Tallahassee, FL, 32310, USA.
| | - Samuel Eddy
- Department of Chemistry, West Virginia University, Morgantown, WV, 26506, USA
| | - Terry Gullion
- Department of Chemistry, West Virginia University, Morgantown, WV, 26506, USA.
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41
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Michaelis VK, Keeler EG, Bahri S, Ong TC, Daviso E, Colvin MT, Griffin RG. Biradical Polarizing Agents at High Fields. J Phys Chem B 2022; 126:7847-7856. [PMID: 36194539 PMCID: PMC9886493 DOI: 10.1021/acs.jpcb.2c03985] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
The sensitivity enhancements available from dynamic nuclear polarization (DNP) are rapidly reshaping the research landscape and expanding the field of nuclear magnetic resonance (NMR) spectroscopy as a tool for solving complex chemical and structural problems. The past decade has seen considerable advances in this burgeoning method, while efforts to further improve its capabilities continue along many avenues. In this report, we examine the influence of static magnetic field strength and temperature on the reported 1H DNP enhancements from three conventional organic biradicals: TOTAPOL, AMUPol, and SPIROPOL. In contrast to the conventional wisdom, our findings show that at liquid nitrogen temperatures and 700 MHz/460.5 GHz, these three bisnitroxides all provide similar 1H DNP enhancements, ε ≈ 60. Furthermore, we investigate the influence of temperature, microwave power, magnetic field strength, and protein sample deuteration on the NMR experimental results.
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Affiliation(s)
- Vladimir K. Michaelis
- Department of Chemistry and Francis Bitter Magnet Laboratory, Massachusetts Institute of Technology, Cambridge 02139 Massachusetts, United States; Department of Chemistry, University of Alberta, Edmonton T6G 2G2 Alberta, Canada
| | - Eric G. Keeler
- Department of Chemistry and Francis Bitter Magnet Laboratory, Massachusetts Institute of Technology, Cambridge 02139 Massachusetts, United States; New York Structural Biology Center, New York 10027, New York, United States
| | - Salima Bahri
- Department of Chemistry and Francis Bitter Magnet Laboratory, Massachusetts Institute of Technology, Cambridge 02139 Massachusetts, United States; Bijvoet Center for Biomolecular Research, Utrecht University, Utrecht 3584CH, The Netherlands
| | - Ta-Chung Ong
- Department of Chemistry and Francis Bitter Magnet Laboratory, Massachusetts Institute of Technology, Cambridge 02139 Massachusetts, United States; Department of Chemistry and Biochemistry, University of California Los Angeles, Los Angeles 90095 California, United States
| | - Eugenio Daviso
- Department of Chemistry and Francis Bitter Magnet Laboratory, Massachusetts Institute of Technology, Cambridge 02139 Massachusetts, United States; Department of Scientific Support and Applications Development, Covaris LLC, Woburn 01801 Massachusetts, United States
| | - Michael T. Colvin
- Department of Chemistry and Francis Bitter Magnet Laboratory, Massachusetts Institute of Technology, Cambridge 02139 Massachusetts, United States; Ortho Clinical Diagnostics, Rochester 14626 New York, United States
| | - Robert G. Griffin
- Department of Chemistry and Francis Bitter Magnet Laboratory, Massachusetts Institute of Technology, Cambridge 02139 Massachusetts, United States
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42
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Soundararajan M, Dubroca T, van Tol J, Hill S, Frydman L, Wi S. Proton-detected solution-state NMR at 14.1 T based on scalar-driven 13C Overhauser dynamic nuclear polarization. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2022; 343:107304. [PMID: 36228539 DOI: 10.1016/j.jmr.2022.107304] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2022] [Revised: 09/16/2022] [Accepted: 09/19/2022] [Indexed: 06/16/2023]
Abstract
Overhauser dynamic nuclear polarization (ODNP) NMR of solutions at high fields is usually mediated by scalar couplings that polarize the nuclei of heavier, electron-rich atoms. This leaves 1H-detected NMR outside the realm of such studies. This study presents experiments that deliver 1H-detected NMR experiments on relatively large liquid volumes (60 ∼ 100 μL) and at high fields (14.1 T), while relying on ODNP enhancements. To this end 13C NMR polarizations were first enhanced by relying on a mechanism that utilizes e--13C scalar coupling interactions; the nuclear spin alignment thus achieved was then passed on to neighboring 1H for observation, by a reverse INEPT scheme relying on one-bond JCH-couplings. Such 13C →1H polarization transfer ported the 13C ODNP gains into the 1H, permitting detection at higher frequencies and with higher potential sensitivities. For a model solution of labeled 13CHCl3 comixed with a nitroxide-based TEMPO derivative as polarizing agent, an ODNP enhancement factor of ca. 5x could thus be imparted to the 1H signal. When applied to bigger organic molecules like 2-13C-phenylacetylene and 13C8-indole, ODNP enhancements in the 1.2-3x range were obtained. Thus, although handicapped by the lower γ of the 13C, enhancements could be imparted on the 1H thermal acquisitions in all cases. We also find that conventional 1H-13C nuclear Overhauser enhancements (NOEs) are largely absent in these solutions due to the presence of co-dissolved radicals, adding negligible gains and playing negligible roles on the scalar e-→13C ODNP transfer. Potential rationalizations of these effects as well as extensions of these experiments, are briefly discussed.
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Affiliation(s)
| | - Thierry Dubroca
- National High Magnetic Field Laboratory, Tallahassee, FL 32310, USA
| | - Johan van Tol
- National High Magnetic Field Laboratory, Tallahassee, FL 32310, USA
| | - Stephen Hill
- National High Magnetic Field Laboratory, Tallahassee, FL 32310, USA; Department of Physics, Florida State University, Tallahassee, FL 32306, USA
| | - Lucio Frydman
- National High Magnetic Field Laboratory, Tallahassee, FL 32310, USA; Department of Chemical and Biological Physics, Weizmann Institute of Sciences, 76100001 Rehovot, Israel.
| | - Sungsool Wi
- National High Magnetic Field Laboratory, Tallahassee, FL 32310, USA.
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43
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Kircher R, Mross S, Hasse H, Münnemann K. Functionalized Controlled Porous Glasses for Producing Radical-Free Hyperpolarized Liquids by Overhauser DNP. Molecules 2022; 27:molecules27196402. [PMID: 36234939 PMCID: PMC9572983 DOI: 10.3390/molecules27196402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Revised: 09/13/2022] [Accepted: 09/25/2022] [Indexed: 11/26/2022] Open
Abstract
Overhauser dynamic nuclear polarization (ODNP) can be used as a tool for NMR signal enhancement and happens on very short time scales. Therefore, ODNP is well suited for the measurement of fast-flowing samples, even in compact magnets, which is beneficial for the real-time monitoring of chemical reactions or processes. ODNP requires the presence of unpaired electrons in the sample, which is usually accomplished by the addition of stable radicals. However, radicals affect the nuclear relaxation times and can hamper the NMR detection. This is circumvented by immobilizing radicals in a packed bed allowing for the measurement of radical-free samples when using ex situ DNP techniques (DNP build-up and NMR detection happen at different places) and flow-induced separation of the hyperpolarized liquid from the radicals. Therefore, the synthesis of robust and chemically inert immobilized radical matrices is mandatory. In the present work, this is accomplished by immobilizing the radical glycidyloxy-tetramethylpiperidinyloxyl with a polyethyleneimine (PEI) linker on the surface of controlled porous glasses (CPG). Both the porosity of the CPGs and also the size of the PEI-linker were varied, resulting in a set of distinct radical matrices for continuous-flow ODNP. The study shows that CPGs with PEI-linkers provide robust, inert and efficient ODNP matrices.
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44
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Vang JY, Breceda C, Her C, Krishnan VV. Enzyme kinetics by real-time quantitative NMR (qNMR) spectroscopy with progress curve analysis. Anal Biochem 2022; 658:114919. [PMID: 36154835 DOI: 10.1016/j.ab.2022.114919] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Revised: 09/14/2022] [Accepted: 09/15/2022] [Indexed: 11/26/2022]
Abstract
This review article summarizes how the experimental data obtained using quantitative nuclear magnetic resonance (qNMR) spectroscopy can be combined with progress curve analysis to determine enzyme kinetic parameters. The qNMR approach enables following the enzymatic conversion of the substrate to the product in real-time by a continuous collection of spectra. The Lambert-W function, a closed-form solution to the time-dependent substrate/product kinetics of the rate equation, can estimate the Michaelis-Menten constant (KM.) and the maximum velocity (Vmax) from a single experiment. This article highlights how the qNMR data is well suited for analysis using the Lambert-W function with three different applications. Results from studies on acetylcholinesterase (acetylcholine to acetic acid and choline), β-Galactosidase (lactose to glucose and galactose), and invertase (sucrose to glucose and fructose) are presented. Furthermore, an additional example of how the progress curve analysis is applied to understand the inhibitory role of the artificial sweetener sucralose on sucrose's enzymatic conversion by invertase is discussed. With the wide availability of NMR spectrometers in academia and industries, including bench-top systems with permanent magnets, and the potential to enhance sensitivity using dynamic nuclear polarization in combination with ultrafast methods, the NMR-based enzyme kinetics could be considered a valuable tool for broader applications in the field of enzyme kinetics.
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Affiliation(s)
- Justin Y Vang
- Department of Chemistry & Biochemistry, California State University, Fresno, CA, 93740, USA
| | - Candido Breceda
- Department of Chemistry & Biochemistry, California State University, Fresno, CA, 93740, USA
| | - Cheenou Her
- Department of Chemistry & Biochemistry, California State University, Fresno, CA, 93740, USA
| | - V V Krishnan
- Department of Chemistry & Biochemistry, California State University, Fresno, CA, 93740, USA; Department of Medical Pathology & Laboratory Medicine, University of California Davis School of Medicine, Davis, CA, 95616, USA.
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45
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Kawasaki T, Yamaguchi Y, Kitahara H, Irizawa A, Tani M. Exploring Biomolecular Self-Assembly with Far-Infrared Radiation. Biomolecules 2022; 12:biom12091326. [PMID: 36139165 PMCID: PMC9496551 DOI: 10.3390/biom12091326] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2022] [Revised: 09/13/2022] [Accepted: 09/17/2022] [Indexed: 11/29/2022] Open
Abstract
Physical engineering technology using far-infrared radiation has been gathering attention in chemical, biological, and material research fields. In particular, the high-power radiation at the terahertz region can give remarkable effects on biological materials distinct from a simple thermal treatment. Self-assembly of biological molecules such as amyloid proteins and cellulose fiber plays various roles in medical and biomaterials fields. A common characteristic of those biomolecular aggregates is a sheet-like fibrous structure that is rigid and insoluble in water, and it is often hard to manipulate the stacking conformation without heating, organic solvents, or chemical reagents. We discovered that those fibrous formats can be conformationally regulated by means of intense far-infrared radiations from a free-electron laser and gyrotron. In this review, we would like to show the latest and the past studies on the effects of far-infrared radiation on the fibrous biomaterials and to suggest the potential use of the far-infrared radiation for regulation of the biomolecular self-assembly.
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Affiliation(s)
- Takayasu Kawasaki
- Accelerator Laboratory, High Energy Accelerator Research Organization, 1-1 Oho, Tsukuba 305-0801, Ibaraki, Japan
- Correspondence:
| | - Yuusuke Yamaguchi
- Research Center for Development of Far-Infrared Region, University of Fukui, 3-9-1 Bunkyo, Fukui 910-8507, Fukui, Japan
| | - Hideaki Kitahara
- Research Center for Development of Far-Infrared Region, University of Fukui, 3-9-1 Bunkyo, Fukui 910-8507, Fukui, Japan
| | - Akinori Irizawa
- SR Center, Research Organization of Science and Technology, Ritsumeikan University, 1-1-1 Nojihigashi, Kusatsu 525-8577, Shiga, Japan
| | - Masahiko Tani
- Research Center for Development of Far-Infrared Region, University of Fukui, 3-9-1 Bunkyo, Fukui 910-8507, Fukui, Japan
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46
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Bulk and Nanoscale Semiconducting Materials: Structural Advances Using Solid-state NMR Spectroscopy. Curr Opin Colloid Interface Sci 2022. [DOI: 10.1016/j.cocis.2022.101631] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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47
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Cheung E, Xia Y, Caporini MA, Gilmore JL. Tools shaping drug discovery and development. BIOPHYSICS REVIEWS 2022; 3:031301. [PMID: 38505278 PMCID: PMC10903431 DOI: 10.1063/5.0087583] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Accepted: 06/21/2022] [Indexed: 03/21/2024]
Abstract
Spectroscopic, scattering, and imaging methods play an important role in advancing the study of pharmaceutical and biopharmaceutical therapies. The tools more familiar to scientists within industry and beyond, such as nuclear magnetic resonance and fluorescence spectroscopy, serve two functions: as simple high-throughput techniques for identification and purity analysis, and as potential tools for measuring dynamics and structures of complex biological systems, from proteins and nucleic acids to membranes and nanoparticle delivery systems. With the expansion of commercial small-angle x-ray scattering instruments into the laboratory setting and the accessibility of industrial researchers to small-angle neutron scattering facilities, scattering methods are now used more frequently in the industrial research setting, and probe-less time-resolved small-angle scattering experiments are now able to be conducted to truly probe the mechanism of reactions and the location of individual components in complex model or biological systems. The availability of atomic force microscopes in the past several decades enables measurements that are, in some ways, complementary to the spectroscopic techniques, and wholly orthogonal in others, such as those related to nanomechanics. As therapies have advanced from small molecules to protein biologics and now messenger RNA vaccines, the depth of biophysical knowledge must continue to serve in drug discovery and development to ensure quality of the drug, and the characterization toolbox must be opened up to adapt traditional spectroscopic methods and adopt new techniques for unraveling the complexities of the new modalities. The overview of the biophysical methods in this review is meant to showcase the uses of multiple techniques for different modalities and present recent applications for tackling particularly challenging situations in drug development that can be solved with the aid of fluorescence spectroscopy, nuclear magnetic resonance spectroscopy, atomic force microscopy, and small-angle scattering.
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Affiliation(s)
- Eugene Cheung
- Moderna, 200 Technology Square, Cambridge, Massachusetts 02139, USA
| | - Yan Xia
- Moderna, 200 Technology Square, Cambridge, Massachusetts 02139, USA
| | - Marc A. Caporini
- Moderna, 200 Technology Square, Cambridge, Massachusetts 02139, USA
| | - Jamie L. Gilmore
- Moderna, 200 Technology Square, Cambridge, Massachusetts 02139, USA
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Jeon J, Blake Wilson C, Yau WM, Thurber KR, Tycko R. Time-resolved solid state NMR of biomolecular processes with millisecond time resolution. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2022; 342:107285. [PMID: 35998398 PMCID: PMC9463123 DOI: 10.1016/j.jmr.2022.107285] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2022] [Revised: 08/10/2022] [Accepted: 08/11/2022] [Indexed: 05/21/2023]
Abstract
We review recent efforts to develop and apply an experimental approach to the structural characterization of transient intermediate states in biomolecular processes that involve large changes in molecular conformation or assembly state. This approach depends on solid state nuclear magnetic resonance (ssNMR) measurements that are performed at very low temperatures, typically 25-30 K, with signal enhancements from dynamic nuclear polarization (DNP). This approach also involves novel technology for initiating the process of interest, either by rapid mixing of two solutions or by a rapid inverse temperature jump, and for rapid freezing to trap intermediate states. Initiation by rapid mixing or an inverse temperature jump can be accomplished in approximately-one millisecond. Freezing can be accomplished in approximately 100 microseconds. Thus, millisecond time resolution can be achieved. Recent applications to the process by which the biologically essential calcium sensor protein calmodulin forms a complex with one of its target proteins and the process by which the bee venom peptide melittin converts from an unstructured monomeric state to a helical, tetrameric state after a rapid change in pH or temperature are described briefly. Future applications of millisecond time-resolved ssNMR are also discussed briefly.
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Affiliation(s)
- Jaekyun Jeon
- Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892-0520, USA
| | - C Blake Wilson
- Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892-0520, USA
| | - Wai-Ming Yau
- Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892-0520, USA
| | - Kent R Thurber
- Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892-0520, USA
| | - Robert Tycko
- Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892-0520, USA.
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Rao Y, Venkatesh A, Moutzouri P, Emsley L. 1H Hyperpolarization of Solutions by Overhauser Dynamic Nuclear Polarization with 13C- 1H Polarization Transfer. J Phys Chem Lett 2022; 13:7749-7755. [PMID: 35969266 PMCID: PMC9421900 DOI: 10.1021/acs.jpclett.2c01956] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Accepted: 08/09/2022] [Indexed: 06/15/2023]
Abstract
Dynamic nuclear polarization (DNP) is a method that can significantly increase the sensitivity of nuclear magnetic resonance. The only effective DNP mechanism for in situ hyperpolarization in solution is Overhauser DNP, which is inefficient for 1H at high magnetic fields. Here we demonstrate the possibility of generating significant 1H hyperpolarization in solution at room temperature. To counter the poor direct 1H Overhauser DNP, we implement steady-state 13C Overhauser DNP in solutions and then transfer the 13C hyperpolarization to 1H via a reverse insensitive nuclei enhanced by polarization transfer scheme. We demonstrate this approach using a 400 MHz gyrotron-equipped 3.2 mm magic angle spinning DNP system to obtain 1H DNP enhancement factors of 48, 8, and 6 for chloroform, tetrachloroethane, and phenylacetylene, respectively, at room temperature.
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Hung I, Keeler EG, Mao W, Gor'kov PL, Griffin RG, Gan Z. Residue-Specific High-Resolution 17O Solid-State Nuclear Magnetic Resonance of Peptides: Multidimensional Indirect 1H Detection and Magic-Angle Spinning. J Phys Chem Lett 2022; 13:6549-6558. [PMID: 35830592 PMCID: PMC9888599 DOI: 10.1021/acs.jpclett.2c01777] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Oxygen is an integral component of proteins but remains sparsely studied because its only NMR active isotope, 17O, has low sensitivity, low resolution, and large quadrupolar couplings. These issues are addressed here with efficient isotopic labeling, high magnetic fields, fast sample spinning, and 1H detection in conjunction with multidimensional experiments to observe oxygen sites specific to each amino acid residue. Notably, cross-polarization at high sample spinning frequencies provides efficient 13C ↔ 17O polarization transfer. The use of 17O for initial polarization is found to provide better sensitivity per unit time compared to 1H. Sharp isotropic 17O peaks are obtained by using a low-power multiple-quantum sequence, which in turn allows extraction of quadrupolar parameters for each oxygen site. Finally, the potential to determine sequential assignments and long-range distance restraints is demonstrated by using 3D 1H/13C/17O experiments, suggesting that such methods can become an essential tool for biomolecular structure determination.
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Affiliation(s)
- Ivan Hung
- National High Magnetic Field Laboratory, 1800 East Paul Dirac Drive, Tallahassee, Florida 32310, United States
| | - Eric G Keeler
- Department of Chemistry and Francis Bitter Magnet Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Wenping Mao
- National High Magnetic Field Laboratory, 1800 East Paul Dirac Drive, Tallahassee, Florida 32310, United States
| | - Peter L Gor'kov
- National High Magnetic Field Laboratory, 1800 East Paul Dirac Drive, Tallahassee, Florida 32310, United States
| | - Robert G Griffin
- Department of Chemistry and Francis Bitter Magnet Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Zhehong Gan
- National High Magnetic Field Laboratory, 1800 East Paul Dirac Drive, Tallahassee, Florida 32310, United States
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