1
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Gruber CG, Frey L, Guntermann R, Medina DD, Cortés E. Early stages of covalent organic framework formation imaged in operando. Nature 2024:10.1038/s41586-024-07483-0. [PMID: 38839960 DOI: 10.1038/s41586-024-07483-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Accepted: 04/29/2024] [Indexed: 06/07/2024]
Abstract
Covalent organic frameworks (COFs) are a functional material class able to harness, convert and store energy. However, after almost 20 years of research, there are no coherent prediction rules for their synthesis conditions. This is partly because of an incomplete picture of nucleation and growth at the early stages of formation. Here we use the optical technique interferometric scattering microscopy (iSCAT)1-3 for in operando studies of COF polymerization and framework formation. We observe liquid-liquid phase separation, pointing to the existence of structured solvents in the form of surfactant-free (micro)emulsions in conventional COF synthesis. Our findings show that the role of solvents extends beyond solubility to being kinetic modulators by compartmentation of reactants and catalyst. Taking advantage of these observations, we develop a synthesis protocol for COFs using room temperature instead of elevated temperatures. This work connects framework synthesis with liquid phase diagrams and thereby enables an active design of the reaction environment, emphasizing that visualization of chemical reactions by means of light-scattering-based techniques can be a powerful approach for advancing rational materials synthesis.
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Affiliation(s)
- Christoph G Gruber
- Nanoinstitute Munich and Center for NanoScience (CeNS), Faculty of Physics, Ludwig-Maximilians-Universität München, Munich, Germany
| | - Laura Frey
- Department of Chemistry and Center for NanoScience (CeNS), Ludwig-Maximilians-Universität München, Munich, Germany
| | - Roman Guntermann
- Department of Chemistry and Center for NanoScience (CeNS), Ludwig-Maximilians-Universität München, Munich, Germany
| | - Dana D Medina
- Department of Chemistry and Center for NanoScience (CeNS), Ludwig-Maximilians-Universität München, Munich, Germany.
| | - Emiliano Cortés
- Nanoinstitute Munich and Center for NanoScience (CeNS), Faculty of Physics, Ludwig-Maximilians-Universität München, Munich, Germany.
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2
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Park JS, Lee IB, Hong SC, Cho M. Label-Free Interference Imaging of Intracellular Trafficking. Acc Chem Res 2024; 57:1565-1576. [PMID: 38781567 DOI: 10.1021/acs.accounts.4c00001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/25/2024]
Abstract
ConspectusIntracellular cargo trafficking is a highly regulated process responsible for transporting vital cellular components to their designated destinations. This intricate journey has been a central focus of cellular biology for many years. Early investigations leaned heavily on biochemical and genetic approaches, offering valuable insight into molecular mechanisms of cellular trafficking. However, while informative, these methods lack the capacity to capture the dynamic nature of intracellular trafficking. The advent of fluorescent protein tagging techniques transformed our ability to monitor the complete lifecycle of intracellular cargos, advancing our understanding. Yet, a central question remains: How do these cargos manage to navigate through traffic challenges, such as congestion, within the crowded cellular environment? Fluorescence-based imaging, though valuable, has inherent limitations when it comes to addressing the aforementioned question. It is prone to photobleaching, making long-term live-cell imaging challenging. Furthermore, they render unlabeled cellular constituents invisible, thereby missing critical environmental information. Notably, the unlabeled majority likely exerts a significant influence on the observed behavior of labeled molecules. These considerations underscore the necessity of developing complementary label-free imaging methods to overcome the limitations of fluorescence imaging or to integrate them synergistically.In this Account, we outline how label-free interference-based imaging has the potential to revolutionize the study of intracellular traffic by offering unprecedented levels of detail. We begin with a brief introduction to our previous findings in live-cell research enabled by interferometric scattering (iSCAT) microscopy, showcasing its aptitude and adeptness in elucidating intricate nanoscale intracellular structures. As we delved deeper into our exploration, we succeeded in the label-free visualization of the entire lifespan of nanoscale protein complexes known as nascent adhesions (NAs) and the dynamic events associated with adhesions within living cells. Our continuous efforts have led to the development of Dynamic Scattering-particle Localization Interference Microscopy (DySLIM), a generalized concept of cargo-localization iSCAT (CL-iSCAT). This label-free, high-speed imaging method, armed with iSCAT detection sensitivity, empowers us to capture quantitative and biophysical insights into cargo transport, providing a realistic view of the intricate nanoscale logistics occurring within living cells. Our in vivo studies demonstrate that intracellular cargos regularly contend with substantial traffic within the crowded cellular environment. Simultaneously, they employ inherent strategies for efficient cargo transport, such as collective migration and hitchhiking, to enhance overall transport rates─intriguingly paralleling the principle and practice of urban traffic management. We also highlight the synergistic benefits of combining DySLIM with chemical-selective fluorescent methods. This Account concludes with a "Conclusions and Outlook" section, outlining promising directions for future research and developments, with a particular emphasis on the functional application of iSCAT live-cell imaging. We aim to inspire further investigation into the efficient transport strategies employed by cells to surmount transportation challenges, shedding light on their significance in cellular phenomena.
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Affiliation(s)
- Jin-Sung Park
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul 02841, Korea
| | - Il-Buem Lee
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul 02841, Korea
| | - Seok-Cheol Hong
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul 02841, Korea
- Department of Physics, Korea University, Seoul 02841, Korea
| | - Minhaeng Cho
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul 02841, Korea
- Department of Chemistry, Korea University, Seoul 02841, Korea
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3
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Nicollier PM, Ratschow AD, Ruggeri F, Drechsler U, Hardt S, Paratore F, Knoll AW. Gate Electrodes Enable Tunable Nanofluidic Particle Traps. J Phys Chem Lett 2024; 15:4151-4157. [PMID: 38597408 DOI: 10.1021/acs.jpclett.4c00278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/11/2024]
Abstract
The ability to control the location of nanoscale objects in liquids is essential for fundamental and applied research from nanofluidics to molecular biology. To overcome their random Brownian motion, the electrostatic fluid trap creates local minima in potential energy by shaping electrostatic interactions with a tailored wall topography. However, this strategy is inherently static; once fabricated, the potential wells cannot be modulated. Here, we propose and experimentally demonstrate that such a trap can be controlled through a buried gate electrode. We measure changes in the average escape times of nanoparticles from the traps to quantify the induced modulations of 0.7 kBT in potential energy and 50 mV in surface potential. Finally, we summarize the mechanism in a parameter-free predictive model, including surface chemistry and electrostatic fringing, that reproduces the experimental results. Our findings open a route toward real-time controllable nanoparticle traps.
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Affiliation(s)
| | - Aaron D Ratschow
- Institute for Nano- and Microfluidics, TU Darmstadt, Peter-Grünberg-Strasse 10, D-64287 Darmstadt, Germany
| | - Francesca Ruggeri
- IBM Research Europe - Zurich, Säumerstrasse 4, CH-8803 Rüschlikon, Switzerland
| | - Ute Drechsler
- IBM Research Europe - Zurich, Säumerstrasse 4, CH-8803 Rüschlikon, Switzerland
| | - Steffen Hardt
- Institute for Nano- and Microfluidics, TU Darmstadt, Peter-Grünberg-Strasse 10, D-64287 Darmstadt, Germany
| | - Federico Paratore
- IBM Research Europe - Zurich, Säumerstrasse 4, CH-8803 Rüschlikon, Switzerland
- Laboratory for Soft Materials and Interfaces, Department of Materials, ETH Zürich, Vladimir-Prelog-Weg 5, CH-8093 Zürich, Switzerland
| | - Armin W Knoll
- IBM Research Europe - Zurich, Säumerstrasse 4, CH-8803 Rüschlikon, Switzerland
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4
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Sülzle J, Elfeky L, Manley S. Surface passivation and functionalisation for mass photometry. J Microsc 2024. [PMID: 38606461 DOI: 10.1111/jmi.13302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 03/30/2024] [Accepted: 04/02/2024] [Indexed: 04/13/2024]
Abstract
Interferometric scattering (iSCAT) microscopy enables the label-free observation of biomolecules. Consequently, single-particle imaging and tracking with the iSCAT-based method known as mass photometry (MP) is a growing area of study. However, establishing reliable cover glass passivation and functionalisation methods is crucial to reduce nonspecific binding and prepare surfaces for in vitro single-molecule binding experiments. Existing protocols for fluorescence microscopy can contain strongly scattering or mobile components, which make them impractical for MP-based microscopy. In this study, we characterise several different surface coatings using MP. We present approaches for cover glass passivation using 3-aminopropyltriethoxysilane (APTES) and polyethylene glycol (PEG, 2k) along with functionalisation via a maleimide-thiol linker. These coatings are compatible with water or salt buffers, and show low background scattering; thus, we are able to measure proteins as small as 60 kDa. In this technical note, we offer a surface preparation suitable for in vitro experiments with MP.
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Affiliation(s)
- Jenny Sülzle
- Laboratory of Experimental Biophysics (LEB), Institute of Physics and Institute of Bioengineering, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Laila Elfeky
- Laboratory of Experimental Biophysics (LEB), Institute of Physics and Institute of Bioengineering, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Suliana Manley
- Laboratory of Experimental Biophysics (LEB), Institute of Physics and Institute of Bioengineering, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
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5
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Gusta MF, Ernst LM, Moriones OH, Piella J, Valeri M, Bastus NG, Puntes V. Long-Term Intracellular Tracking of Label-Free Nanoparticles in Live Cells and Tissues with Confocal Microscopy. SMALL METHODS 2024:e2301713. [PMID: 38564783 DOI: 10.1002/smtd.202301713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Revised: 03/01/2024] [Indexed: 04/04/2024]
Abstract
The label-free imaging of inorganic nanoparticles (NPs) using confocal laser scanning microscopy (CLSM) provides a powerful and versatile tool for studying interactions between NPs and biological systems. Without the need for exogenous labels or markers, it simply benefits from the differential scattering of visible photons between biomaterials and inorganic NPs. Validation experiments conducted on fixed and living cells in real-time, as well as mouse tissue sections following parenteral administration of NPs. Additionally, by incorporating reporter fluorophores and utilizing both reflectance and fluorescence imaging modalities, the method enables high-resolution multiplex imaging of cellular structures and NPs. Different sizes and concentrations of Au NPs are tested as for Ag, Fe3O4, and CeO2 NPs, all with biological interest. Overall, the comprehensive study of NP imaging by confocal microscopy in reflectance mode provides valuable insights and tools for researchers interested in monitoring the nano-bio interactions.
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Affiliation(s)
- Muriel F Gusta
- Institut Català de Nanociència i Nanotecnologia (ICN2), Campus UAB, Bellaterra, Barcelona, 08193, Spain
- Vall d'Hebron Institut of Research (VHIR), Barcelona, 08035, Spain
- Networking Research Centre for Bioengineering, Biomaterials, and Nanomedicine (CIBER-BBN), Madrid, 28029, Spain
| | - Lena M Ernst
- Vall d'Hebron Institut of Research (VHIR), Barcelona, 08035, Spain
| | - Oscar H Moriones
- Institut Català de Nanociència i Nanotecnologia (ICN2), Campus UAB, Bellaterra, Barcelona, 08193, Spain
| | - Jordi Piella
- Institut Català de Nanociència i Nanotecnologia (ICN2), Campus UAB, Bellaterra, Barcelona, 08193, Spain
| | - Marta Valeri
- Vall d'Hebron Institut of Research (VHIR), Barcelona, 08035, Spain
| | - Neus G Bastus
- Institut Català de Nanociència i Nanotecnologia (ICN2), Campus UAB, Bellaterra, Barcelona, 08193, Spain
- Networking Research Centre for Bioengineering, Biomaterials, and Nanomedicine (CIBER-BBN), Madrid, 28029, Spain
| | - Victor Puntes
- Institut Català de Nanociència i Nanotecnologia (ICN2), Campus UAB, Bellaterra, Barcelona, 08193, Spain
- Vall d'Hebron Institut of Research (VHIR), Barcelona, 08035, Spain
- Networking Research Centre for Bioengineering, Biomaterials, and Nanomedicine (CIBER-BBN), Madrid, 28029, Spain
- Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, 08010, Spain
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6
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Fineberg A, Takagi Y, Thirumurugan K, Andrecka J, Billington N, Young G, Cole D, Burgess SA, Curd AP, Hammer JA, Sellers JR, Kukura P, Knight PJ. Myosin-5 varies its step length to carry cargo straight along the irregular F-actin track. Proc Natl Acad Sci U S A 2024; 121:e2401625121. [PMID: 38507449 PMCID: PMC10990141 DOI: 10.1073/pnas.2401625121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Accepted: 02/15/2024] [Indexed: 03/22/2024] Open
Abstract
Molecular motors employ chemical energy to generate unidirectional mechanical output against a track while navigating a chaotic cellular environment, potential disorder on the track, and against Brownian motion. Nevertheless, decades of nanometer-precise optical studies suggest that myosin-5a, one of the prototypical molecular motors, takes uniform steps spanning 13 subunits (36 nm) along its F-actin track. Here, we use high-resolution interferometric scattering microscopy to reveal that myosin takes strides spanning 22 to 34 actin subunits, despite walking straight along the helical actin filament. We show that cumulative angular disorder in F-actin accounts for the observed proportion of each stride length, akin to crossing a river on variably spaced stepping stones. Electron microscopy revealed the structure of the stepping molecule. Our results indicate that both motor and track are soft materials that can adapt to function in complex cellular conditions.
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Affiliation(s)
- Adam Fineberg
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, OxfordOX1 3QZ, United Kingdom
- Laboratory of Single Molecule Biophysics, Biochemistry and Biophysics Center, National Heart, Lung, and Blood Institute, NIH, Bethesda, MD20892
| | - Yasuharu Takagi
- Laboratory of Molecular Physiology, Cell and Developmental Biology Center, National Heart, Lung, and Blood Institute, NIH, Bethesda, MD20892
| | - Kavitha Thirumurugan
- Astbury Centre for Structural Molecular Biology, and School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, LeedsLS2 9JT, United Kingdom
| | - Joanna Andrecka
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, OxfordOX1 3QZ, United Kingdom
| | - Neil Billington
- Laboratory of Molecular Physiology, Cell and Developmental Biology Center, National Heart, Lung, and Blood Institute, NIH, Bethesda, MD20892
| | - Gavin Young
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, OxfordOX1 3QZ, United Kingdom
| | - Daniel Cole
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, OxfordOX1 3QZ, United Kingdom
| | - Stan A. Burgess
- Astbury Centre for Structural Molecular Biology, and School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, LeedsLS2 9JT, United Kingdom
| | - Alistair P. Curd
- Astbury Centre for Structural Molecular Biology, and School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, LeedsLS2 9JT, United Kingdom
| | - John A. Hammer
- Cell and Developmental Biology Center, National Heart, Lung, and Blood Institute, NIH, Bethesda, MD20892
| | - James R. Sellers
- Laboratory of Molecular Physiology, Cell and Developmental Biology Center, National Heart, Lung, and Blood Institute, NIH, Bethesda, MD20892
| | - Philipp Kukura
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, OxfordOX1 3QZ, United Kingdom
- The Kavli Institute for Nanoscience Discovery, Dorothy Crowfoot Hodgkin Building, University of Oxford, OxfordOX1 3QU, United Kingdom
| | - Peter J. Knight
- Astbury Centre for Structural Molecular Biology, and School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, LeedsLS2 9JT, United Kingdom
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7
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Zhou X, Chieng A, Wang S. Label-Free Optical Imaging of Nanoscale Single Entities. ACS Sens 2024; 9:543-554. [PMID: 38346398 PMCID: PMC10990724 DOI: 10.1021/acssensors.3c02526] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/24/2024]
Abstract
The advancement of optical microscopy technologies has achieved imaging of nanoscale objects, including nanomaterials, virions, organelles, and biological molecules, at the single entity level. Recently developed plasmonic and scattering based optical microscopy technologies have enabled label-free imaging of single entities with high spatial and temporal resolutions. These label-free methods eliminate the complexity of sample labeling and minimize the perturbation of the analyte native state. Additionally, these imaging-based methods can noninvasively probe the dynamics and functions of single entities with sufficient throughput for heterogeneity analysis. This perspective will review label-free single entity imaging technologies and discuss their principles, applications, and key challenges.
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Affiliation(s)
- Xinyu Zhou
- Biodesign Center for Bioelectronics and Biosensors, Arizona State University, Tempe, Arizona 85287, United States
- School of Biological and Health Systems Engineering, Arizona State University, Tempe, Arizona 85287, United States
| | - Andy Chieng
- Biodesign Center for Bioelectronics and Biosensors, Arizona State University, Tempe, Arizona 85287, United States
- School of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, United States
| | - Shaopeng Wang
- Biodesign Center for Bioelectronics and Biosensors, Arizona State University, Tempe, Arizona 85287, United States
- School of Biological and Health Systems Engineering, Arizona State University, Tempe, Arizona 85287, United States
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8
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Sülzle J, Yang W, Shimoda Y, Ronceray N, Mayner E, Manley S, Radenovic A. Label-Free Imaging of DNA Interactions with 2D Materials. ACS PHOTONICS 2024; 11:737-744. [PMID: 38405387 PMCID: PMC10885193 DOI: 10.1021/acsphotonics.3c01604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/05/2023] [Revised: 12/18/2023] [Accepted: 12/19/2023] [Indexed: 02/27/2024]
Abstract
Two-dimensional (2D) materials offer potential as substrates for biosensing devices, as their properties can be engineered to tune interactions between the surface and biomolecules. Yet, not many methods can measure these interactions in a liquid environment without introducing labeling agents such as fluorophores. In this work, we harness interferometric scattering (iSCAT) microscopy, a label-free imaging technique, to investigate the interactions of single molecules of long dsDNA with 2D materials. The millisecond temporal resolution of iSCAT allows us to capture the transient interactions and to observe the dynamics of unlabeled DNA binding to a hexagonal boron nitride (hBN) surface in solution for extended periods (including a fraction of 10%, of trajectories lasting longer than 110 ms). Using a focused ion beam technique to engineer defects, we find that DNA binding affinity is enhanced at defects; when exposed to long lanes, DNA binds preferentially at the lane edges. Overall, we demonstrate that iSCAT imaging is a useful tool to study how biomolecules interact with 2D materials, a key component in engineering future biosensors.
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Affiliation(s)
- Jenny Sülzle
- Institute
of Physics and Institute of Bioengineering, Laboratory of Experimental
Biophysics (LEB), École Polytechnique
Fédérale de Lausanne (EPFL), Lausanne, 1015, Switzerland
| | - Wayne Yang
- Institute
of Bioengineering, Laboratory of Nanoscale Biology (LBEN), École Polytechnique Fédérale
de Lausanne (EPFL), Lausanne, 1015, Switzerland
| | - Yuta Shimoda
- Institute
of Bioengineering, Laboratory of Nanoscale Biology (LBEN), École Polytechnique Fédérale
de Lausanne (EPFL), Lausanne, 1015, Switzerland
| | - Nathan Ronceray
- Institute
of Bioengineering, Laboratory of Nanoscale Biology (LBEN), École Polytechnique Fédérale
de Lausanne (EPFL), Lausanne, 1015, Switzerland
| | - Eveline Mayner
- Institute
of Bioengineering, Laboratory of Nanoscale Biology (LBEN), École Polytechnique Fédérale
de Lausanne (EPFL), Lausanne, 1015, Switzerland
| | - Suliana Manley
- Institute
of Physics and Institute of Bioengineering, Laboratory of Experimental
Biophysics (LEB), École Polytechnique
Fédérale de Lausanne (EPFL), Lausanne, 1015, Switzerland
| | - Aleksandra Radenovic
- Institute
of Bioengineering, Laboratory of Nanoscale Biology (LBEN), École Polytechnique Fédérale
de Lausanne (EPFL), Lausanne, 1015, Switzerland
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9
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Shaked NT, Boppart SA, Wang LV, Popp J. Label-free biomedical optical imaging. NATURE PHOTONICS 2023; 17:1031-1041. [PMID: 38523771 PMCID: PMC10956740 DOI: 10.1038/s41566-023-01299-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Accepted: 08/22/2023] [Indexed: 03/22/2024]
Abstract
Label-free optical imaging employs natural and nondestructive approaches for the visualisation of biomedical samples for both biological assays and clinical diagnosis. Currently, this field revolves around multiple broad technology-oriented communities, each with a specific focus on a particular modality despite the existence of shared challenges and applications. As a result, biologists or clinical researchers who require label-free imaging are often not aware of the most appropriate modality to use. This manuscript presents a comprehensive review of and comparison among different label-free imaging modalities and discusses common challenges and applications. We expect this review to facilitate collaborative interactions between imaging communities, push the field forward and foster technological advancements, biophysical discoveries, as well as clinical detection, diagnosis, and monitoring of disease.
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Affiliation(s)
- Natan T Shaked
- Department of Biomedical Engineering, Faculty of Engineering, Tel Aviv University, Tel Aviv, Israel
| | - Stephen A Boppart
- Beckman Institute for Advanced Science and Technology, Department of Electrical and Computer Engineering,; Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, IL, USA
| | - Lihong V Wang
- Caltech Optical Imaging Laboratory, Andrew and Peggy Cherng Department of Medical Engineering, Department of Electrical Engineering, California Institute of Technology, Pasadena, CA, USA
| | - Jürgen Popp
- Leibniz Institute of Photonic Technology, Member of Leibniz Health Technologies, Member of the Leibniz Centre for Photonics in Infection Research, Jena, Germany; Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Jena, Germany
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10
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Park JS, Lee IB, Moon HM, Hong SC, Cho M. Long-term cargo tracking reveals intricate trafficking through active cytoskeletal networks in the crowded cellular environment. Nat Commun 2023; 14:7160. [PMID: 37963891 PMCID: PMC10645962 DOI: 10.1038/s41467-023-42347-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Accepted: 09/29/2023] [Indexed: 11/16/2023] Open
Abstract
A eukaryotic cell is a microscopic world within which efficient material transport is essential. Yet, how a cell manages to deliver cellular cargos efficiently in a crowded environment remains poorly understood. Here, we used interferometric scattering microscopy to track unlabeled cargos in directional motion in a massively parallel fashion. Our label-free, cargo-tracing method revealed not only the dynamics of cargo transportation but also the fine architecture of the actively used cytoskeletal highways and the long-term evolution of the associated traffic at sub-diffraction resolution. Cargos frequently run into a blocked road or experience a traffic jam. Still, they have effective strategies to circumvent those problems: opting for an alternative mode of transport and moving together in tandem or migrating collectively. All taken together, a cell is an incredibly complex and busy space where the principle and practice of transportation intriguingly parallel those of our macroscopic world.
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Affiliation(s)
- Jin-Sung Park
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul, Korea
| | - Il-Buem Lee
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul, Korea
| | - Hyeon-Min Moon
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul, Korea
| | - Seok-Cheol Hong
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul, Korea.
- Department of Physics, Korea University, Seoul, Korea.
| | - Minhaeng Cho
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul, Korea.
- Department of Chemistry, Korea University, Seoul, Korea.
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11
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Cheng SW, Xu D, Su H, Baxter JM, Holtzman LN, Watanabe K, Taniguchi T, Hone JC, Barmak K, Delor M. Optical Imaging of Ultrafast Phonon-Polariton Propagation through an Excitonic Sensor. NANO LETTERS 2023; 23:9936-9942. [PMID: 37852205 DOI: 10.1021/acs.nanolett.3c02897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2023]
Abstract
Hexagonal boron nitride (hBN) hosts phonon polaritons (PhP), hybrid light-matter states that facilitate electromagnetic field confinement and exhibit long-range ballistic transport. Extracting the spatiotemporal dynamics of PhPs usually requires "tour de force" experimental methods such as ultrafast near-field infrared microscopy. Here, we leverage the remarkable environmental sensitivity of excitons in two-dimensional transition metal dichalcogenides to image PhP propagation in adjacent hBN slabs. Using ultrafast optical microscopy on monolayer WSe2/hBN heterostructures, we image propagating PhPs from 3.5 K to room temperature with subpicosecond and few-nanometer precision. Excitons in WSe2 act as transducers between visible light pulses and infrared PhPs, enabling visible-light imaging of PhP transport with far-field microscopy. We also report evidence of excitons in WSe2 copropagating with hBN PhPs over several micrometers. Our results provide new avenues for imaging polar excitations over a large frequency range with extreme spatiotemporal precision and new mechanisms to realize ballistic exciton transport at room temperature.
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Affiliation(s)
- Shan-Wen Cheng
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - Ding Xu
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - Haowen Su
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - James M Baxter
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - Luke N Holtzman
- Department of Applied Physics and Applied Mathematics, Columbia University, New York, New York 10027, United States
| | - Kenji Watanabe
- Research Center for Electronic and Optical Materials, National Institute for Materials Science, 1-1 Namiki, Tsukuba 305-0044, Japan
| | - Takashi Taniguchi
- Research Center for Materials Nanoarchitectonics, National Institute for Materials Science, 1-1 Namiki, Tsukuba 305-0044, Japan
| | - James C Hone
- Department of Mechanical Engineering, Columbia University, New York, New York 10027, United States
| | - Katayun Barmak
- Department of Applied Physics and Applied Mathematics, Columbia University, New York, New York 10027, United States
| | - Milan Delor
- Department of Chemistry, Columbia University, New York, New York 10027, United States
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12
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Kashkanova AD, Blessing M, Reischke M, Baur J, Baur AS, Sandoghdar V, Van Deun J. Label-free discrimination of extracellular vesicles from large lipoproteins. J Extracell Vesicles 2023; 12:e12348. [PMID: 37489102 PMCID: PMC10366660 DOI: 10.1002/jev2.12348] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Revised: 05/05/2023] [Accepted: 05/26/2023] [Indexed: 07/26/2023] Open
Abstract
Extracellular vesicles (EVs) are increasingly gaining interest as biomarkers and therapeutics. Accurate sizing and quantification of EVs remain problematic, given their nanometre size range and small scattering cross-sections. This is compounded by the fact that common EV isolation methods result in co-isolation of particles with comparable features. Especially in blood plasma, similarly-sized lipoproteins outnumber EVs to a great extent. Recently, interferometric nanoparticle tracking analysis (iNTA) was introduced as a particle analysis method that enables determining the size and refractive index of nanoparticles with high sensitivity and precision. In this work, we apply iNTA to differentiate between EVs and lipoproteins, and compare its performance to conventional nanoparticle tracking analysis (NTA). We show that iNTA can accurately quantify EVs in artificial EV-lipoprotein mixtures and in plasma-derived EV samples of varying complexity. Conventional NTA could not report on EV numbers, as it was not able to distinguish EVs from lipoproteins. iNTA has the potential to become a new standard for label-free EV characterization in suspension.
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Affiliation(s)
- Anna D. Kashkanova
- Max Planck Institute for the Science of LightErlangenGermany
- Max‐Planck‐Zentrum für Physik und MedizinErlangenGermany
| | - Martin Blessing
- Max Planck Institute for the Science of LightErlangenGermany
- Max‐Planck‐Zentrum für Physik und MedizinErlangenGermany
- Department of PhysicsFriedrich‐Alexander‐Universität Erlangen‐NürnbergErlangenGermany
| | - Marie Reischke
- Max Planck Institute for the Science of LightErlangenGermany
| | - Jan‐Ole Baur
- Department of DermatologyUniversitätsklinikum Erlangen, Friedrich‐Alexander‐Universität Erlangen‐NürnbergErlangenGermany
| | - Andreas S. Baur
- Department of DermatologyUniversitätsklinikum Erlangen, Friedrich‐Alexander‐Universität Erlangen‐NürnbergErlangenGermany
| | - Vahid Sandoghdar
- Max Planck Institute for the Science of LightErlangenGermany
- Max‐Planck‐Zentrum für Physik und MedizinErlangenGermany
- Department of PhysicsFriedrich‐Alexander‐Universität Erlangen‐NürnbergErlangenGermany
| | - Jan Van Deun
- Department of DermatologyUniversitätsklinikum Erlangen, Friedrich‐Alexander‐Universität Erlangen‐NürnbergErlangenGermany
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13
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Guo Y, Walter V, Vanuytsel S, Parperis C, Sengel JT, Weatherill EE, Wallace MI. Real-Time Monitoring and Control of Nanoparticle Formation. J Am Chem Soc 2023; 145:15809-15815. [PMID: 37458572 PMCID: PMC10375529 DOI: 10.1021/jacs.3c02484] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/27/2023]
Abstract
Methods capable of controlling synthesis at the level of an individual nanoparticle are a key step toward improved reproducibility and scalability in engineering complex nanomaterials. To address this, we combine the spatially patterned activation of the photoreductant sodium pyruvate with interferometric scattering microscopy to achieve fast, label-free monitoring and control of hundreds of gold nanoparticles in real time. Individual particle growth kinetics are well-described by a two-step nucleation-autocatalysis model but with a distribution of individual rate constants that change with reaction conditions.
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Affiliation(s)
- Yujie Guo
- Department of Chemistry, King's College London, Britannia House, 7 Trinity Street, London SE1 1DB, U.K
| | - Vivien Walter
- Department of Engineering, King's College London, London WC2R 2LS, U.K
| | - Steven Vanuytsel
- Department of Chemistry, King's College London, Britannia House, 7 Trinity Street, London SE1 1DB, U.K
| | - Christopher Parperis
- Department of Chemistry, King's College London, Britannia House, 7 Trinity Street, London SE1 1DB, U.K
| | - Jason T Sengel
- Department of Chemistry, King's College London, Britannia House, 7 Trinity Street, London SE1 1DB, U.K
| | - Eve E Weatherill
- Department of Chemistry, King's College London, Britannia House, 7 Trinity Street, London SE1 1DB, U.K
| | - Mark I Wallace
- Department of Chemistry, King's College London, Britannia House, 7 Trinity Street, London SE1 1DB, U.K
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14
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Fineberg A, Takagi Y, Thirumurugan K, Andrecka J, Billington N, Young G, Cole D, Burgess SA, Curd AP, Hammer JA, Sellers JR, Kukura P, Knight PJ. Myosin-5 varies its steps along the irregular F-actin track. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.07.16.549178. [PMID: 37503193 PMCID: PMC10370000 DOI: 10.1101/2023.07.16.549178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/29/2023]
Abstract
Molecular motors employ chemical energy to generate unidirectional mechanical output against a track. By contrast to the majority of macroscopic machines, they need to navigate a chaotic cellular environment, potential disorder in the track and Brownian motion. Nevertheless, decades of nanometer-precise optical studies suggest that myosin-5a, one of the prototypical molecular motors, takes uniform steps spanning 13 subunits (36 nm) along its F-actin track. Here, we use high-resolution interferometric scattering (iSCAT) microscopy to reveal that myosin takes strides spanning 22 to 34 actin subunits, despite walking straight along the helical actin filament. We show that cumulative angular disorder in F-actin accounts for the observed proportion of each stride length, akin to crossing a river on variably-spaced stepping stones. Electron microscopy revealed the structure of the stepping molecule. Our results indicate that both motor and track are soft materials that can adapt to function in complex cellular conditions.
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Affiliation(s)
- Adam Fineberg
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3QZ, U.K
- Laboratory of Single Molecule Biophysics, NHLBI, National Institutes of Health, Bethesda, Maryland 20892, U.S.A
| | - Yasuharu Takagi
- Laboratory of Molecular Physiology, NHLBI, National Institutes of Health, Bethesda, Maryland 20892, U.S.A
| | - Kavitha Thirumurugan
- Astbury Centre for Structural Molecular Biology, and Institute of Molecular and Cellular Biology, University of Leeds, Leeds, LS2 9JT, U.K
- Present address: Structural Biology Lab, Pearl Research Park, SBST, Vellore Institute of Technology, Vellore-632 014, India
| | - Joanna Andrecka
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3QZ, U.K
- Present address: Human Technopole, Viale Rita Levi-Montalcini 1, 20157, Milan, Italy
| | - Neil Billington
- Laboratory of Molecular Physiology, NHLBI, National Institutes of Health, Bethesda, Maryland 20892, U.S.A
- Present address: Department of Biochemistry and Molecular Medicine, West Virginia University, Morgantown, WV, U.S.A
| | - Gavin Young
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3QZ, U.K
- Present address: Refeyn Ltd., Unit 9, Trade City, Sandy Ln W, Littlemore, Oxford OX4 6FF, U.K
| | - Daniel Cole
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3QZ, U.K
- Present address: Refeyn Ltd., Unit 9, Trade City, Sandy Ln W, Littlemore, Oxford OX4 6FF, U.K
| | - Stan A. Burgess
- Astbury Centre for Structural Molecular Biology, and Institute of Molecular and Cellular Biology, University of Leeds, Leeds, LS2 9JT, U.K
| | - Alistair P. Curd
- Astbury Centre for Structural Molecular Biology, and Institute of Molecular and Cellular Biology, University of Leeds, Leeds, LS2 9JT, U.K
| | - John A. Hammer
- Cell and Developmental Biology Center, NHLBI, National Institutes of Health, Bethesda, MD 20892, U.S.A
| | - James R. Sellers
- Laboratory of Molecular Physiology, NHLBI, National Institutes of Health, Bethesda, Maryland 20892, U.S.A
| | - Philipp Kukura
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3QZ, U.K
- The Kavli Institute for Nanoscience Discovery, Dorothy Crowfoot Hodgkin Building, University of Oxford, South Parks Rd, Oxford OX1 3QU, U.K
| | - Peter J. Knight
- Astbury Centre for Structural Molecular Biology, and Institute of Molecular and Cellular Biology, University of Leeds, Leeds, LS2 9JT, U.K
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15
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Velasco L, Ouyang T, Reinhard BM. Two-Color iSCAT Imaging of Ag Nanoparticles Resolves Size and Ambient Refractive Index Changes. NANO LETTERS 2023; 23:4642-4647. [PMID: 37159328 PMCID: PMC10752631 DOI: 10.1021/acs.nanolett.3c01306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
The ability to discern noble metal nanoparticles (NPs) with different sizes and in ambient media with different refractive indices has important applications in imaging and sensing. Here a two-color (405 nm, 445 nm) interferometric scattering (iSCAT) detection scheme is applied to characterize the wavelength-dependent iSCAT contrast of Ag NPs with nominal diameters of 10, 20, 40, and 60 nm and to distinguish between NPs of different sizes. The iSCAT contrast also depends on the ambient refractive index and the relative iSCAT contrast on both channels revealed a spectral red-shift for 40 and 60 nm Ag NPs when the ambient refractive index was increased from n = 1.3892 to n = 1.4328. With the selected wavelength channels, the spectral resolution of the two-color imaging strategy was, however, insufficient to resolve spectral shifts induced by refractive index changes for 10 and 20 nm Ag NPs.
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Affiliation(s)
- Leslie Velasco
- Department of Chemistry and The Photonics Center, Boston University, Boston, MA 02215, United States
| | - Tianhong Ouyang
- Department of Chemistry and The Photonics Center, Boston University, Boston, MA 02215, United States
| | - Björn M. Reinhard
- Department of Chemistry and The Photonics Center, Boston University, Boston, MA 02215, United States
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16
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Liu L, Tibbs J, Li N, Bacon A, Shepherd S, Lee H, Chauhan N, Demirci U, Wang X, Cunningham BT. A photonic resonator interferometric scattering microscope for label-free detection of nanometer-scale objects with digital precision in point-of-use environments. Biosens Bioelectron 2023; 228:115197. [PMID: 36905862 PMCID: PMC10072782 DOI: 10.1016/j.bios.2023.115197] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2023] [Revised: 02/27/2023] [Accepted: 03/04/2023] [Indexed: 03/08/2023]
Abstract
Label-free detection and digital counting of nanometer-scaled objects such as nanoparticles, viruses, extracellular vesicles, and protein molecules enable a wide range of applications in cancer diagnostics, pathogen detection, and life science research. Here, we report the design, implementation, and characterization of a compact Photonic Resonator Interferometric Scattering Microscope (PRISM) designed for point-of-use environments and applications. The contrast of interferometric scattering microscopy is amplified through a photonic crystal surface, upon which scattered light from an object combines with illumination from a monochromatic source. The use of a photonic crystal substrate for interferemetric scattering microscopy results in reduced requirements for high-intensity lasers or oil-immersion objectives, thus opening a pathway toward instruments that are more suitable for environments outside the optics laboratory. The instrument incorporates two innovative elements that facilitate operation on a desktop in ordinary laboratory environments by users that do not have optics expertise. First, because scattering microscopes are extremely sensitive to vibration, we incorporated an inexpensive but effective solution of suspending the instrument's main components from a rigid metal framework using elastic bands, resulting in an average of 28.7 dBV reduction in vibration amplitude compared to an office desk. Second, an automated focusing module based on the principle of total internal reflection maintains the stability of image contrast over time and spatial position. In this work, we characterize the system's performance by measuring the contrast from gold nanoparticles with diameters in the 10-40 nm range and by observing various biological analytes, including HIV virus, SARS-CoV-2 virus, exosome, and ferritin protein.
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Affiliation(s)
- Leyang Liu
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Nick Holonyak Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Joseph Tibbs
- Nick Holonyak Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Nantao Li
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Nick Holonyak Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Amanda Bacon
- Nick Holonyak Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Skye Shepherd
- Nick Holonyak Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Hankeun Lee
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Nick Holonyak Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Neha Chauhan
- Nick Holonyak Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Utkan Demirci
- Canary Center at Stanford for Cancer Early Detection, Stanford School of Medicine, Stanford University, Palo Alto, CA, 94304, USA
| | - Xing Wang
- Nick Holonyak Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Brian T Cunningham
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Nick Holonyak Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Cancer Center at Illinois, Urbana, IL, 61801, USA.
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17
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Küppers M, Albrecht D, Kashkanova AD, Lühr J, Sandoghdar V. Confocal interferometric scattering microscopy reveals 3D nanoscopic structure and dynamics in live cells. Nat Commun 2023; 14:1962. [PMID: 37029107 PMCID: PMC10081331 DOI: 10.1038/s41467-023-37497-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Accepted: 03/16/2023] [Indexed: 04/09/2023] Open
Abstract
Bright-field light microscopy and related phase-sensitive techniques play an important role in life sciences because they provide facile and label-free insights into biological specimens. However, lack of three-dimensional imaging and low sensitivity to nanoscopic features hamper their application in many high-end quantitative studies. Here, we demonstrate that interferometric scattering (iSCAT) microscopy operated in the confocal mode provides unique label-free solutions for live-cell studies. We reveal the nanometric topography of the nuclear envelope, quantify the dynamics of the endoplasmic reticulum, detect single microtubules, and map nanoscopic diffusion of clathrin-coated pits undergoing endocytosis. Furthermore, we introduce the combination of confocal and wide-field iSCAT modalities for simultaneous imaging of cellular structures and high-speed tracking of nanoscopic entities such as single SARS-CoV-2 virions. We benchmark our findings against simultaneously acquired fluorescence images. Confocal iSCAT can be readily implemented as an additional contrast mechanism in existing laser scanning microscopes. The method is ideally suited for live studies on primary cells that face labeling challenges and for very long measurements beyond photobleaching times.
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Affiliation(s)
- Michelle Küppers
- Max Planck Institute for the Science of Light, 91058, Erlangen, Germany
- Max-Planck-Zentrum für Physik und Medizin, 91058, Erlangen, Germany
- Department of Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91058, Erlangen, Germany
| | - David Albrecht
- Max Planck Institute for the Science of Light, 91058, Erlangen, Germany
- Max-Planck-Zentrum für Physik und Medizin, 91058, Erlangen, Germany
| | - Anna D Kashkanova
- Max Planck Institute for the Science of Light, 91058, Erlangen, Germany
- Max-Planck-Zentrum für Physik und Medizin, 91058, Erlangen, Germany
| | - Jennifer Lühr
- Max Planck Institute for the Science of Light, 91058, Erlangen, Germany
- Max-Planck-Zentrum für Physik und Medizin, 91058, Erlangen, Germany
| | - Vahid Sandoghdar
- Max Planck Institute for the Science of Light, 91058, Erlangen, Germany.
- Max-Planck-Zentrum für Physik und Medizin, 91058, Erlangen, Germany.
- Department of Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91058, Erlangen, Germany.
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18
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Graciani G, Yoon TY. The New Kid on the Block: Mass Photometry. Mol Cells 2023; 46:187-189. [PMID: 36994477 PMCID: PMC10070162 DOI: 10.14348/molcells.2023.0017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Accepted: 01/25/2023] [Indexed: 03/31/2023] Open
Affiliation(s)
- Guillaume Graciani
- Institute for Molecular Biology and Genetics, Seoul National University, Seoul 08826, Korea
| | - Tae-Young Yoon
- Institute for Molecular Biology and Genetics, Seoul National University, Seoul 08826, Korea
- School of Biological Sciences, Seoul National University, Seoul 08826, Korea
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19
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Dahmardeh M, Mirzaalian Dastjerdi H, Mazal H, Köstler H, Sandoghdar V. Self-supervised machine learning pushes the sensitivity limit in label-free detection of single proteins below 10 kDa. Nat Methods 2023; 20:442-447. [PMID: 36849549 PMCID: PMC9998267 DOI: 10.1038/s41592-023-01778-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2022] [Accepted: 01/06/2023] [Indexed: 03/01/2023]
Abstract
Interferometric scattering (iSCAT) microscopy is a label-free optical method capable of detecting single proteins, localizing their binding positions with nanometer precision, and measuring their mass. In the ideal case, iSCAT is limited by shot noise such that collection of more photons should extend its detection sensitivity to biomolecules of arbitrarily low mass. However, a number of technical noise sources combined with speckle-like background fluctuations have restricted the detection limit in iSCAT. Here, we show that an unsupervised machine learning isolation forest algorithm for anomaly detection pushes the mass sensitivity limit by a factor of 4 to below 10 kDa. We implement this scheme both with a user-defined feature matrix and a self-supervised FastDVDNet and validate our results with correlative fluorescence images recorded in total internal reflection mode. Our work opens the door to optical investigations of small traces of biomolecules and disease markers such as α-synuclein, chemokines and cytokines.
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Affiliation(s)
- Mahyar Dahmardeh
- Max Planck Institute for the Science of Light, Erlangen, Germany.,Max-Planck-Zentrum für Physik und Medizin, Erlangen, Germany
| | - Houman Mirzaalian Dastjerdi
- Max Planck Institute for the Science of Light, Erlangen, Germany.,Max-Planck-Zentrum für Physik und Medizin, Erlangen, Germany.,Department of Computer Science, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
| | - Hisham Mazal
- Max Planck Institute for the Science of Light, Erlangen, Germany.,Max-Planck-Zentrum für Physik und Medizin, Erlangen, Germany
| | - Harald Köstler
- Department of Computer Science, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany.,Erlangen National High Performance Computing Center (NHR@FAU), Erlangen, Germany
| | - Vahid Sandoghdar
- Max Planck Institute for the Science of Light, Erlangen, Germany. .,Max-Planck-Zentrum für Physik und Medizin, Erlangen, Germany. .,Department of Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany.
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20
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Liu L, Tibbs J, Li N, Bacon A, Shepherd S, Lee H, Chauhan N, Demirci U, Wang X, Cunningham BT. A Photonic Resonator Interferometric Scattering Microscope for Label-free Detection of Nanometer-Scale Objects with Digital Precision in Point-of-Use Environments. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2022:2022.12.13.520266. [PMID: 36561182 PMCID: PMC9774210 DOI: 10.1101/2022.12.13.520266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Label-free detection and digital counting of nanometer-scaled objects such as nanoparticles, viruses, extracellular vesicles, and protein molecules enable a wide range of applications in cancer diagnostics, pathogen detection, and life science research. The contrast of interferometric scattering microscopy is amplified through a photonic crystal surface, upon which scattered light from an object combines with illumination from a monochromatic plane wave source. The use of a photonic crystal substrate for interference scattering microscopy results in reduced requirements for high-intensity lasers or oil-immersion objectives, thus opening a pathway toward instruments that are more suitable for environments outside the optics laboratory. Here, we report the design, implementation, and characterization of a compact Photonic Resonator Interferometric Scattering Microscope (PRISM) designed for point-of-use environments and applications. The instrument incorporates two innovative elements that facilitate operation on a desktop in ordinary laboratory environments by users that do not have optics expertise. First, because scattering microscopes are extremely sensitive to vibration, we incorporated an inexpensive but effective solution of suspending the instrument's main components from a rigid metal framework using elastic bands, resulting in an average of 28.7 dBV reduction in vibration amplitude compared to an office desk. Second, an automated focusing module based on the principle of total internal reflection maintains the stability of image contrast over time and spatial position, facilitating automated data collection. In this work, we characterize the system's performance by measuring the contrast from gold nanoparticles with diameters in the 10-40 nm range and by observing various biological analytes, including HIV virus, SARS-CoV-2 virus, exosomes, and ferritin protein.
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Affiliation(s)
- Leyang Liu
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
- Nick Holonyak Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
| | - Joseph Tibbs
- Nick Holonyak Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
- Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
| | - Nantao Li
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
- Nick Holonyak Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
| | - Amanda Bacon
- Nick Holonyak Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
- Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
| | - Skye Shepherd
- Nick Holonyak Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
- Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
| | - Hankeun Lee
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
- Nick Holonyak Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
| | - Neha Chauhan
- Nick Holonyak Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
| | - Utkan Demirci
- Canary Center at Stanford for Cancer Early Detection, Stanford School of Medicine, Stanford University, Palo Alto, California 94304, USA
| | - Xing Wang
- Nick Holonyak Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
| | - Brian T. Cunningham
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
- Nick Holonyak Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
- Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
- Cancer Center at Illinois, Urbana, Illinois 61801, USA
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21
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Hsiao YT, Wu TY, Wu BK, Chu SW, Hsieh CL. Spinning disk interferometric scattering confocal microscopy captures millisecond timescale dynamics of living cells. OPTICS EXPRESS 2022; 30:45233-45245. [PMID: 36522930 DOI: 10.1364/oe.471935] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Accepted: 10/27/2022] [Indexed: 06/17/2023]
Abstract
Interferometric scattering (iSCAT) microscopy is a highly sensitive imaging technique that uses common-path interferometry to detect the linear scattering fields associated with samples. However, when measuring a complex sample, such as a biological cell, the superposition of the scattering signals from various sources, particularly those along the optical axis of the microscope objective, considerably complicates the data interpretation. Herein, we demonstrate high-speed, wide-field iSCAT microscopy in conjunction with confocal optical sectioning. Utilizing the multibeam scanning strategy of spinning disk confocal microscopy, our iSCAT confocal microscope acquires images at a rate of 1,000 frames per second (fps). The configurations of the spinning disk and the background correction procedures are described. The iSCAT confocal microscope is highly sensitive-individual 10 nm gold nanoparticles are successfully detected. Using high-speed iSCAT confocal imaging, we captured the rapid movements of single nanoparticles on the model membrane and single native vesicles in the living cells. Label-free iSCAT confocal imaging enables the detailed visualization of nanoscopic cell dynamics in their most native forms. This holds promise to unveil cell activities that are previously undescribed by fluorescence-based microscopy.
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22
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Nguyen MC, Berto P, Valentino F, Kanoufi F, Tessier G. Spectroscopy of individual Brownian nanoparticles in real-time using holographic localization. OPTICS EXPRESS 2022; 30:43182-43194. [PMID: 36523022 DOI: 10.1364/oe.463115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Accepted: 07/18/2022] [Indexed: 06/17/2023]
Abstract
Individual nanoparticle spectroscopic characterization is fundamental, but challenging in liquids. While confocal selectivity is necessary to isolate a particle in a crowd, Brownian motion constantly offsets the particle from the light collection volume. Here, we present a system able to acquire holograms and reconstruct them to precisely determine the 3D position of a particle in real time. These coordinates drive an adaptive system comprising two galvanometric mirrors (x,y, transverse directions) and a tunable lens (z, longitudinal) which redirect light scattered from the corresponding region of space towards the confocal entrance of a spectrometer, thus allowing long spectral investigations on individual, freely-moving particles. A study of the movements and spectra of individual 100 nm Au nanoparticles undergoing two types of aggregations illustrates the possibilities of the method.
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23
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Lin S, He Y, Feng D, Piliarik M, Chen XW. Optical Fingerprint of Flat Substrate Surface and Marker-Free Lateral Displacement Detection with Angstrom-Level Precision. PHYSICAL REVIEW LETTERS 2022; 129:213201. [PMID: 36461964 DOI: 10.1103/physrevlett.129.213201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Accepted: 10/25/2022] [Indexed: 06/17/2023]
Abstract
We report that flat substrates such as glass coverslips with surface roughness well below 0.5 nm feature notable speckle patterns when observed with high-sensitivity interference microscopy. We uncover that these speckle patterns unambiguously originate from the subnanometer surface undulations, and develop an intuitive model to illustrate how subnanometer nonresonant dielectric features could generate pronounced interference contrast in the far field. We introduce the concept of optical fingerprint for the deterministic speckle pattern associated with a particular substrate surface area and intentionally enhance the speckle amplitudes for potential applications. We demonstrate such optical fingerprints can be leveraged for reproducible position identification and marker-free lateral displacement detection with an experimental precision of 0.22 nm. The reproducible position identification allows us to detect new nanoscopic features developed during laborious processes performed outside of the microscope. The demonstrated capability for ultrasensitive displacement detection may find applications in the semiconductor industry and superresolution optical microscopy.
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Affiliation(s)
- Shupei Lin
- School of Physics and Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Luoyu Road 1037, Wuhan 430074, People's Republic of China
| | - Yong He
- School of Physics and Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Luoyu Road 1037, Wuhan 430074, People's Republic of China
| | - Delong Feng
- School of Physics and Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Luoyu Road 1037, Wuhan 430074, People's Republic of China
| | - Marek Piliarik
- Institute of Photonics and Electronics of the Czech Academy of Sciences, Chaberská 1014/57, 18251 Prague, Czech Republic
| | - Xue-Wen Chen
- School of Physics and Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Luoyu Road 1037, Wuhan 430074, People's Republic of China and Institute for Quantum Science and Engineering and Hubei Key Laboratory of Gravitation and Quantum Physics, Huazhong University of Science and Technology, Luoyu Road 1037, Wuhan 430074, People's Republic of China
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24
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Lavania A, Carpenter WB, Oltrogge LM, Perez D, Turnšek JB, Savage DF, Moerner WE. Exploring Masses and Internal Mass Distributions of Single Carboxysomes in Free Solution Using Fluorescence and Interferometric Scattering in an Anti-Brownian Trap. J Phys Chem B 2022; 126:8747-8759. [PMID: 36282790 PMCID: PMC9639131 DOI: 10.1021/acs.jpcb.2c05939] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Carboxysomes are self-assembled bacterial microcompartments that facilitate carbon assimilation by colocalizing the enzymes of CO2 fixation within a protein shell. These microcompartments can be highly heterogeneous in their composition and filling, so measuring the mass and loading of an individual carboxysome would allow for better characterization of its assembly and function. To enable detailed and extended characterizations of single nanoparticles in solution, we recently demonstrated an improved interferometric scattering anti-Brownian electrokinetic (ISABEL) trap, which tracks the position of a single nanoparticle via its scattering of a near-infrared beam and applies feedback to counteract its Brownian motion. Importantly, the scattering signal can be related to the mass of nanoscale proteinaceous objects, whose refractive indices are well-characterized. We calibrate single-particle scattering cross-section measurements in the ISABEL trap and determine individual carboxysome masses in the 50-400 MDa range by analyzing their scattering cross sections with a core-shell model. We further investigate carboxysome loading by combining mass measurements with simultaneous fluorescence reporting from labeled internal components. This method may be extended to other biological objects, such as viruses or extracellular vesicles, and can be combined with orthogonal fluorescence reporters to achieve precise physical and chemical characterization of individual nanoscale biological objects.
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Affiliation(s)
- Abhijit
A. Lavania
- Department
of Chemistry, Stanford University, Stanford, California94305, United States,Department
of Applied Physics, Stanford University, Stanford, California94305, United States
| | - William B. Carpenter
- Department
of Chemistry, Stanford University, Stanford, California94305, United States
| | - Luke M. Oltrogge
- Department
of Molecular and Cell Biology, University
of California Berkeley, Berkeley, California94720, United States
| | - Davis Perez
- Department
of Chemistry, Stanford University, Stanford, California94305, United States
| | - Julia B. Turnšek
- Department
of Molecular and Cell Biology, University
of California Berkeley, Berkeley, California94720, United States
| | - David F. Savage
- Department
of Molecular and Cell Biology, University
of California Berkeley, Berkeley, California94720, United States
| | - W. E. Moerner
- Department
of Chemistry, Stanford University, Stanford, California94305, United States,Department
of Applied Physics, Stanford University, Stanford, California94305, United States,
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25
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Lyu PT, Li QY, Wu P, Sun C, Kang B, Chen HY, Xu JJ. Decrypting Material Performance by Wide-field Femtosecond Interferometric Imaging of Energy Carrier Evolution. J Am Chem Soc 2022; 144:13928-13937. [PMID: 35866699 DOI: 10.1021/jacs.2c05735] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Energy carrier evolution is crucial for material performance. Ultrafast microscopy has been widely applied to visualize the spatiotemporal evolution of energy carriers. However, direct imaging of a small amount of energy carriers on the nanoscale remains difficult due to extremely weak transient signals. Here, we present a method for ultrasensitive and high-throughput imaging of energy carrier evolution in space and time. This method combines femtosecond pump-probe techniques with interferometric scattering microscopy (iSCAT), named Femto-iSCAT. The interferometric principle and unique spatially modulated contrast enhancement enable the exploration of new science. We address three important and challenging problems: transport of different energy carriers at various interfaces, heterogeneous hot-electron distribution and relaxation in single plasmonic resonators, and distinct structure-dependent edge-state dynamics of carriers and excitons in optoelectronic semiconductors. Femto-iSCAT holds great potential as a universal tool for ultrasensitive imaging of energy carrier evolution in space and time.
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Affiliation(s)
- Pin-Tian Lyu
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Qing-Yue Li
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Pei Wu
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Chao Sun
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Bin Kang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Hong-Yuan Chen
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Jing-Juan Xu
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
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26
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van Heerden B, Kruger T. Theoretical comparison of real-time feedback-driven single-particle tracking techniques. J Chem Phys 2022; 157:084111. [DOI: 10.1063/5.0096729] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Real-time feedback-driven single-particle tracking is a technique that uses feedbackcontrol to enable single-molecule spectroscopy of freely diffusing particles in nativeor near-native environments. A number of different RT-FD-SPT approaches exist,and comparisons between methods based on experimental results are of limited usedue to differences in samples and setups. In this study, we used statistical calcu-lations and dynamical simulations to directly compare the performance of differentmethods. The methods considered were the orbital method, the Knight's Tour (gridscan) method and MINFLUX, and we considered both fluorescence-based and inter-ferometric scattering (iSCAT) approaches. There is a fundamental trade-off betweenprecision and speed, with the Knight's Tour method being able to track the fastestdiffusion but with low precision, and MINFLUX being the most precise but onlytracking slow diffusion. To compare iSCAT and fluorescence, different biologicalsamples were considered, including labeled and intrinsically fluorescent samples. Thesuccess of iSCAT as compared to fluorescence is strongly dependent on the particlesize and the density and photophysical properties of the fluorescent particles. Usinga wavelength for iSCAT that is negligibly absorbed by the tracked particle allowsan increased illumination intensity, which results in iSCAT providing better trackingfor most samples. This work highlights the fundamental aspects of performance inRT-FD-SPT and should assist with the selection of an appropriate method for a par-ticular application. The approach used can easily be extended to other RT-FD-SPTmethods.
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27
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Carpenter W, Lavania AA, Borden JS, Oltrogge LM, Perez D, Dahlberg PD, Savage DF, Moerner WE. Ratiometric Sensing of Redox Environments Inside Individual Carboxysomes Trapped in Solution. J Phys Chem Lett 2022; 13:4455-4462. [PMID: 35549289 PMCID: PMC9150107 DOI: 10.1021/acs.jpclett.2c00782] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
Diffusion of biological nanoparticles in solution impedes our ability to continuously monitor individual particles and measure their physical and chemical properties. To overcome this, we previously developed the interferometric scattering anti-Brownian electrokinetic (ISABEL) trap, which uses scattering to localize a particle and applies electrokinetic forces that counteract Brownian motion, thus enabling extended observation. Here we present an improved ISABEL trap that incorporates a near-infrared scatter illumination beam and rapidly interleaves 405 and 488 nm fluorescence excitation reporter beams. With the ISABEL trap, we monitored the internal redox environment of individual carboxysomes labeled with the ratiometric redox reporter roGFP2. Carboxysomes widely vary in scattering contrast (reporting on size) and redox-dependent ratiometric fluorescence. Furthermore, we used redox sensing to explore the chemical kinetics within intact carboxysomes, where bulk measurements may contain unwanted contributions from aggregates or interfering fluorescent proteins. Overall, we demonstrate the ISABEL trap's ability to sensitively monitor nanoscale biological objects, enabling new experiments on these systems.
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Affiliation(s)
- William
B. Carpenter
- Department
of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Abhijit A. Lavania
- Department
of Applied Physics, Stanford University, Stanford, California 94305, United States
| | - Julia S. Borden
- Department
of Molecular and Cell Biology, University
of California Berkeley, Berkeley, California 94720, United States
| | - Luke M. Oltrogge
- Department
of Molecular and Cell Biology, University
of California Berkeley, Berkeley, California 94720, United States
| | - Davis Perez
- Department
of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Peter D. Dahlberg
- Department
of Chemistry, Stanford University, Stanford, California 94305, United States
- Division
of CryoEM and Bioimaging, SSRL, SLAC National
Accelerator Laboratory, Menlo Park, California 94025, United States
| | - David F. Savage
- Department
of Molecular and Cell Biology, University
of California Berkeley, Berkeley, California 94720, United States
| | - W. E. Moerner
- Department
of Chemistry, Stanford University, Stanford, California 94305, United States
- Department
of Applied Physics, Stanford University, Stanford, California 94305, United States
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28
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Kashkanova AD, Blessing M, Gemeinhardt A, Soulat D, Sandoghdar V. Precision size and refractive index analysis of weakly scattering nanoparticles in polydispersions. Nat Methods 2022; 19:586-593. [PMID: 35534632 PMCID: PMC9119850 DOI: 10.1038/s41592-022-01460-z] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Accepted: 03/18/2022] [Indexed: 12/19/2022]
Abstract
Characterization of the size and material properties of particles in liquid suspensions is in very high demand, for example, in the analysis of colloidal samples or of bodily fluids such as urine or blood plasma. However, existing methods are limited in their ability to decipher the constituents of realistic samples. Here we introduce iNTA as a new method that combines interferometric detection of scattering with nanoparticle tracking analysis to reach unprecedented sensitivity and precision in determining the size and refractive index distributions of nanoparticles in suspensions. After benchmarking iNTA with samples of colloidal gold, we present its remarkable ability to resolve the constituents of various multicomponent and polydisperse samples of known origin. Furthermore, we showcase the method by elucidating the refractive index and size distributions of extracellular vesicles from Leishmania parasites and human urine. The current performance of iNTA already enables advances in several important applications, but we also discuss possible improvements.
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Affiliation(s)
- Anna D Kashkanova
- Max Planck Institute for the Science of Light, Erlangen, Germany
- Max-Planck-Zentrum für Physik und Medizin, Erlangen, Germany
| | - Martin Blessing
- Max Planck Institute for the Science of Light, Erlangen, Germany
- Max-Planck-Zentrum für Physik und Medizin, Erlangen, Germany
- Department of Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
| | - André Gemeinhardt
- Max Planck Institute for the Science of Light, Erlangen, Germany
- Max-Planck-Zentrum für Physik und Medizin, Erlangen, Germany
- Department of Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
| | - Didier Soulat
- Institute of Clinical Microbiology, Immunology and Hygiene, Universitätsklinikum Erlangen and Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen, Germany
| | - Vahid Sandoghdar
- Max Planck Institute for the Science of Light, Erlangen, Germany.
- Max-Planck-Zentrum für Physik und Medizin, Erlangen, Germany.
- Department of Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany.
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29
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Evanescent scattering imaging of single protein binding kinetics and DNA conformation changes. Nat Commun 2022; 13:2298. [PMID: 35484120 PMCID: PMC9051210 DOI: 10.1038/s41467-022-30046-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Accepted: 04/04/2022] [Indexed: 11/08/2022] Open
Abstract
Evanescent illumination has been widely used to detect single biological macromolecules because it can notably enhance light-analyte interaction. However, the current evanescent single-molecule detection system usually requires specially designed microspheres or nanomaterials. Here we show that single protein detection and imaging can be realized on a plain glass surface by imaging the interference between the evanescent lights scattered by the single proteins and by the natural roughness of the cover glass. This allows us to quantify the sizes of single proteins, characterize the protein-antibody interactions at the single-molecule level, and analyze the heterogeneity of single protein binding behaviors. In addition, owing to the exponential distribution of evanescent field intensity, the evanescent imaging system can track the analyte axial movement with high resolution, which can be used to analyze the DNA conformation changes, providing one solution for detecting small molecules, such as microRNA. This work demonstrates a label-free single protein imaging method with ordinary consumables and may pave a road for detecting small biological molecules.
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30
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Adhikari S, Orrit M. Progress and perspectives in single-molecule optical spectroscopy. J Chem Phys 2022; 156:160903. [PMID: 35489995 DOI: 10.1063/5.0087003] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We review some of the progress of single-molecule optical experiments in the past 20 years and propose some perspectives for the coming years. We particularly focus on methodological advances in fluorescence, super-resolution, photothermal contrast, and interferometric scattering and briefly discuss a few of the applications. These advances have enabled the exploration of new emitters and quantum optics; the chemistry and biology of complex heterogeneous systems, nanoparticles, and plasmonics; and the detection and study of non-fluorescing and non-absorbing nano-objects. We conclude by proposing some ideas for future experiments. The field will move toward more and better signals of a broader variety of objects and toward a sharper view of the surprising complexity of the nanoscale world of single (bio-)molecules, nanoparticles, and their nano-environments.
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Affiliation(s)
- Subhasis Adhikari
- Huygens-Kamerlingh Onnes Laboratory, Leiden University, P.O. Box 9504, 2333 CA Leiden, The Netherlands
| | - Michel Orrit
- Huygens-Kamerlingh Onnes Laboratory, Leiden University, P.O. Box 9504, 2333 CA Leiden, The Netherlands
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31
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Su H, Xu D, Cheng SW, Li B, Liu S, Watanabe K, Taniguchi T, Berkelbach TC, Hone JC, Delor M. Dark-Exciton Driven Energy Funneling into Dielectric Inhomogeneities in Two-Dimensional Semiconductors. NANO LETTERS 2022; 22:2843-2850. [PMID: 35294835 DOI: 10.1021/acs.nanolett.1c04997] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The optoelectronic and transport properties of two-dimensional transition metal dichalcogenide semiconductors (2D TMDs) are highly susceptible to external perturbation, enabling precise tailoring of material function through postsynthetic modifications. Here, we show that nanoscale inhomogeneities known as nanobubbles can be used for both strain and, less invasively, dielectric tuning of exciton transport in bilayer tungsten diselenide (WSe2). We use ultrasensitive spatiotemporally resolved optical scattering microscopy to directly image exciton transport, revealing that dielectric nanobubbles are surprisingly efficient at funneling and trapping excitons at room temperature, even though the energies of the bright excitons are negligibly affected. Our observations suggest that exciton funneling in dielectric inhomogeneities is driven by momentum-indirect (dark) excitons whose energies are more sensitive to dielectric perturbations than bright excitons. These results reveal a new pathway to control exciton transport in 2D semiconductors with exceptional spatial and energetic precision using dielectric engineering of dark state energetic landscapes.
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Affiliation(s)
- Haowen Su
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - Ding Xu
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - Shan-Wen Cheng
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - Baichang Li
- Department of Mechanical Engineering, Columbia University, New York, New York 10027, United States
| | - Song Liu
- Department of Mechanical Engineering, Columbia University, New York, New York 10027, United States
| | | | | | - Timothy C Berkelbach
- Department of Chemistry, Columbia University, New York, New York 10027, United States
- Center for Computational Quantum Physics, Flatiron Institute, New York, New York 10010, United States
| | - James C Hone
- Department of Mechanical Engineering, Columbia University, New York, New York 10027, United States
| | - Milan Delor
- Department of Chemistry, Columbia University, New York, New York 10027, United States
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32
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Li W, Zeng X, Dong Y, Feng Z, Wen H, Chen Q, Wen L, Song S, Li X, Cao Y. Laser nanoprinting of floating three-dimensional plasmonic color in pH-responsive hydrogel. NANOTECHNOLOGY 2021; 33:065302. [PMID: 34710861 DOI: 10.1088/1361-6528/ac345b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Accepted: 10/28/2021] [Indexed: 06/13/2023]
Abstract
Recent demonstrations of metasurfaces present their great potential to implement flat and multifunctional optical elements, which are accomplished with the designs of planar optics and micro-/nano- fabrications. Integrating metasurfaces in three dimensions has manifested drastically increasing advantages in manipulating light fields by extending design freedom. However, fabricating three-dimensional metasurfaces remain a tough challenge due to the lack of stereo printing protocols. Herein, we demonstrate laser nanoprinting of floated silver nanoparticle array in transparent hydrogel films for 3D metasurface to achieve color patterning. It is found that spatially resolved nanoparticles can be produced through laser induced photoreduction of silver ions and robustly anchored to the gel backbones by a focused femtosecond laser beam within a pH-responsive smart hydrogel matrix. With the aid of expansion properties of the pH-responsive hydrogel, repetitive coloration of the patterned plasmonic nanoparticle array over a wide spectrum range is achieved via reversible regulation of nanoparticle spacing from 550 to 350 nm and vice versa. This approach allows broadband 3D color-regulation in nanoscale for applications in active spectral filtering, information encryption, security tagging and biological colorimetric sensing, etc.
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Affiliation(s)
- Wanyi Li
- Guangdong Provincial Key Laboratory of Optical Fiber Sensing and Communications, Institute of Photonics Technology, Jinan University, Guangzhou 511443, People's Republic of China
- Wuxi University, Wuxi 214105, People's Republic of China
| | - Xianzhi Zeng
- Guangdong Provincial Key Laboratory of Optical Fiber Sensing and Communications, Institute of Photonics Technology, Jinan University, Guangzhou 511443, People's Republic of China
| | - Yajing Dong
- Institute of Nanophotonics, Jinan University, Guangzhou 511443, People's Republic of China
| | - Ziwei Feng
- Guangdong Provincial Key Laboratory of Optical Fiber Sensing and Communications, Institute of Photonics Technology, Jinan University, Guangzhou 511443, People's Republic of China
| | - Hongjing Wen
- Guangdong Provincial Key Laboratory of Optical Fiber Sensing and Communications, Institute of Photonics Technology, Jinan University, Guangzhou 511443, People's Republic of China
| | - Qin Chen
- Institute of Nanophotonics, Jinan University, Guangzhou 511443, People's Republic of China
| | - Long Wen
- Institute of Nanophotonics, Jinan University, Guangzhou 511443, People's Republic of China
| | - Shichao Song
- Guangdong Provincial Key Laboratory of Optical Fiber Sensing and Communications, Institute of Photonics Technology, Jinan University, Guangzhou 511443, People's Republic of China
| | - Xiangping Li
- Guangdong Provincial Key Laboratory of Optical Fiber Sensing and Communications, Institute of Photonics Technology, Jinan University, Guangzhou 511443, People's Republic of China
| | - Yaoyu Cao
- Guangdong Provincial Key Laboratory of Optical Fiber Sensing and Communications, Institute of Photonics Technology, Jinan University, Guangzhou 511443, People's Republic of China
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33
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Priest L, Peters JS, Kukura P. Scattering-based Light Microscopy: From Metal Nanoparticles to Single Proteins. Chem Rev 2021; 121:11937-11970. [PMID: 34587448 PMCID: PMC8517954 DOI: 10.1021/acs.chemrev.1c00271] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Indexed: 02/02/2023]
Abstract
Our ability to detect, image, and quantify nanoscopic objects and molecules with visible light has undergone dramatic improvements over the past few decades. While fluorescence has historically been the go-to contrast mechanism for ultrasensitive light microscopy due to its superior background suppression and specificity, recent developments based on light scattering have reached single-molecule sensitivity. They also have the advantages of universal applicability and the ability to obtain information about the species of interest beyond its presence and location. Many of the recent advances are driven by novel approaches to illumination, detection, and background suppression, all aimed at isolating and maximizing the signal of interest. Here, we review these developments grouped according to the basic principles used, namely darkfield imaging, interferometric detection, and surface plasmon resonance microscopy.
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Affiliation(s)
| | | | - Philipp Kukura
- Physical and Theoretical
Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
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34
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Bujak Ł, Holanová K, García Marín A, Henrichs V, Barvík I, Braun M, Lánský Z, Piliarik M. Fast Leaps between Millisecond Confinements Govern Ase1 Diffusion along Microtubules. SMALL METHODS 2021; 5:e2100370. [PMID: 34927934 DOI: 10.1002/smtd.202100370] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2021] [Revised: 07/24/2021] [Indexed: 06/14/2023]
Abstract
Diffusion is the most fundamental mode of protein translocation within cells. Confined diffusion of proteins along the electrostatic potential constituted by the surface of microtubules, although modeled meticulously in molecular dynamics simulations, has not been experimentally observed in real-time. Here, interferometric scattering microscopy is used to directly visualize the movement of the microtubule-associated protein Ase1 along the microtubule surface at nanometer and microsecond resolution. Millisecond confinements of Ase1 and fast leaps between these positions of dwelling preferentially occurring along the microtubule protofilaments are resolved, revealing Ase1's mode of diffusive translocation along the microtubule's periodic surface. The derived interaction potential closely matches the tubulin-dimer periodicity and the distribution of the electrostatic potential on the microtubule lattice. It is anticipated that mapping the interaction landscapes for different proteins on microtubules, finding plausible energetic barriers of different positioning and heights, can provide valuable insights into regulating the dynamics of essential cytoskeletal processes, such as intracellular cargo trafficking, cell division, and morphogenesis, all of which rely on diffusive translocation of proteins along microtubules.
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Affiliation(s)
- Łukasz Bujak
- Institute of Photonics and Electronics of the Czech Academy of Sciences, Chaberská 1014/57, Prague, 18251, Czech Republic
| | - Kristýna Holanová
- Institute of Photonics and Electronics of the Czech Academy of Sciences, Chaberská 1014/57, Prague, 18251, Czech Republic
| | - Antonio García Marín
- Institute of Photonics and Electronics of the Czech Academy of Sciences, Chaberská 1014/57, Prague, 18251, Czech Republic
| | - Verena Henrichs
- Institute of Biotechnology of the Czech Academy of Sciences, BIOCEV, Průmyslová 595, Vestec, 25250, Czech Republic
| | - Ivan Barvík
- Faculty of Mathematics and Physics, Institute of Physics, Charles University, Ke Karlovu 2026/5, Prague, 12116, Czech Republic
| | - Marcus Braun
- Institute of Biotechnology of the Czech Academy of Sciences, BIOCEV, Průmyslová 595, Vestec, 25250, Czech Republic
| | - Zdeněk Lánský
- Institute of Biotechnology of the Czech Academy of Sciences, BIOCEV, Průmyslová 595, Vestec, 25250, Czech Republic
| | - Marek Piliarik
- Institute of Photonics and Electronics of the Czech Academy of Sciences, Chaberská 1014/57, Prague, 18251, Czech Republic
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35
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Goswami N, He YR, Deng YH, Oh C, Sobh N, Valera E, Bashir R, Ismail N, Kong H, Nguyen TH, Best-Popescu C, Popescu G. Label-free SARS-CoV-2 detection and classification using phase imaging with computational specificity. LIGHT, SCIENCE & APPLICATIONS 2021; 10:176. [PMID: 34465726 PMCID: PMC8408039 DOI: 10.1038/s41377-021-00620-8] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Revised: 08/03/2021] [Accepted: 08/18/2021] [Indexed: 05/22/2023]
Abstract
Efforts to mitigate the COVID-19 crisis revealed that fast, accurate, and scalable testing is crucial for curbing the current impact and that of future pandemics. We propose an optical method for directly imaging unlabeled viral particles and using deep learning for detection and classification. An ultrasensitive interferometric method was used to image four virus types with nanoscale optical path-length sensitivity. Pairing these data with fluorescence images for ground truth, we trained semantic segmentation models based on U-Net, a particular type of convolutional neural network. The trained network was applied to classify the viruses from the interferometric images only, containing simultaneously SARS-CoV-2, H1N1 (influenza-A virus), HAdV (adenovirus), and ZIKV (Zika virus). Remarkably, due to the nanoscale sensitivity in the input data, the neural network was able to identify SARS-CoV-2 vs. the other viruses with 96% accuracy. The inference time for each image is 60 ms, on a common graphic-processing unit. This approach of directly imaging unlabeled viral particles may provide an extremely fast test, of less than a minute per patient. As the imaging instrument operates on regular glass slides, we envision this method as potentially testing on patient breath condensates. The necessary high throughput can be achieved by translating concepts from digital pathology, where a microscope can scan hundreds of slides automatically.
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Affiliation(s)
- Neha Goswami
- Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA
- Beckman Institute of Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA
| | - Yuchen R He
- Beckman Institute of Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA
- Department of Electrical and Computer Engineering, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA
| | - Yu-Heng Deng
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Chamteut Oh
- Department of Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Nahil Sobh
- Beckman Institute of Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA
- NCSA Center for Artificial Intelligence Innovation, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Enrique Valera
- Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA
- Holonyak Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois, 61801, USA
- Biomedical Research Center, Carle Foundation Hospital, 509W University Ave., Urbana, Illinois, 61801, USA
| | - Rashid Bashir
- Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA
- Holonyak Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois, 61801, USA
- Biomedical Research Center, Carle Foundation Hospital, 509W University Ave., Urbana, Illinois, 61801, USA
- Carle Illinois College of Medicine, 807 South Wright St., Urbana, Illinois, 61801, USA
- Mayo-Illinois Alliance for Technology Based Healthcare, Urbana, Illinois, 61801, USA
| | - Nahed Ismail
- Department of Pathology, College of Medicine, University of Illinois at Chicago, Chicago, IL, USA
| | - Hyunjoon Kong
- Beckman Institute of Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Thanh H Nguyen
- Department of Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
- Carle Illinois College of Medicine, 807 South Wright St., Urbana, Illinois, 61801, USA
| | - Catherine Best-Popescu
- Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA
- Beckman Institute of Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA
| | - Gabriel Popescu
- Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA.
- Beckman Institute of Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA.
- Department of Electrical and Computer Engineering, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA.
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36
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Observing the structural variations on binary complex vesicle surfaces and the influence on molecular transportation. Chem Phys 2021. [DOI: 10.1016/j.chemphys.2021.111250] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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37
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Moteki N. Measuring the complex forward-scattering amplitude of single particles by self-reference interferometry: CAS-v1 protocol. OPTICS EXPRESS 2021; 29:20688-20714. [PMID: 34266153 DOI: 10.1364/oe.423175] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Accepted: 05/18/2021] [Indexed: 06/13/2023]
Abstract
Theoretical and experimental bases are given for measuring the complex forward-scattering amplitude of single particles through self-reference interferometry. Our analyses reveal the nondimensional parameters that primarily control the accuracy and resolution of the complex amplitude data. We propose a measurement protocol, Complex Amplitude Sensing version 1 (CAS-v1), for effectively utilizing self-reference interferometry as a universal tool for inline measurements of the complex forward-scattering amplitude of single sub- and super-micron particles suspended in a fluid flow. The CAS-v1 protocol will facilitate applications of self-reference interferometry to real-time particle measurements in the industrial, biomedical, and environmental sciences.
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38
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Merryweather AJ, Schnedermann C, Jacquet Q, Grey CP, Rao A. Operando optical tracking of single-particle ion dynamics in batteries. Nature 2021; 594:522-528. [PMID: 34163058 DOI: 10.1038/s41586-021-03584-2] [Citation(s) in RCA: 52] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2020] [Accepted: 04/27/2021] [Indexed: 02/06/2023]
Abstract
The key to advancing lithium-ion battery technology-in particular, fast charging-is the ability to follow and understand the dynamic processes occurring in functioning materials under realistic conditions, in real time and on the nano- to mesoscale. Imaging of lithium-ion dynamics during battery operation (operando imaging) at present requires sophisticated synchrotron X-ray1-7 or electron microscopy8,9 techniques, which do not lend themselves to high-throughput material screening. This limits rapid and rational materials improvements. Here we introduce a simple laboratory-based, optical interferometric scattering microscope10-13 to resolve nanoscopic lithium-ion dynamics in battery materials, and apply it to follow cycling of individual particles of the archetypal cathode material14,15, LixCoO2, within an electrode matrix. We visualize the insulator-to-metal, solid solution and lithium ordering phase transitions directly and determine rates of lithium diffusion at the single-particle level, identifying different mechanisms on charge and discharge. Finally, we capture the dynamic formation of domain boundaries between different crystal orientations associated with the monoclinic lattice distortion at the Li0.5CoO2 composition16. The high-throughput nature of our methodology allows many particles to be sampled across the entire electrode and in future will enable exploration of the role of dislocations, morphologies and cycling rate on battery degradation. The generality of our imaging concept means that it can be applied to study any battery electrode, and more broadly, systems where the transport of ions is associated with electronic or structural changes. Such systems include nanoionic films, ionic conducting polymers, photocatalytic materials and memristors.
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Affiliation(s)
- Alice J Merryweather
- Cavendish Laboratory, University of Cambridge, Cambridge, UK.,Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, UK
| | | | - Quentin Jacquet
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, UK
| | - Clare P Grey
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, UK.
| | - Akshay Rao
- Cavendish Laboratory, University of Cambridge, Cambridge, UK.
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39
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Robert HML, Holanová K, Bujak Ł, Vala M, Henrichs V, Lánský Z, Piliarik M. Fast photothermal spatial light modulation for quantitative phase imaging at the nanoscale. Nat Commun 2021; 12:2921. [PMID: 34012021 PMCID: PMC8134576 DOI: 10.1038/s41467-021-23252-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Accepted: 04/12/2021] [Indexed: 12/25/2022] Open
Abstract
Spatial light modulators have become an essential tool for advanced microscopy, enabling breakthroughs in 3D, phase, and super-resolution imaging. However, continuous spatial-light modulation that is capable of capturing sub-millisecond microscopic motion without diffraction artifacts and polarization dependence is challenging. Here we present a photothermal spatial light modulator (PT-SLM) enabling fast phase imaging for nanoscopic 3D reconstruction. The PT-SLM can generate a step-like wavefront change, free of diffraction artifacts, with a high transmittance and a modulation efficiency independent of light polarization. We achieve a phase-shift > π and a response time as short as 70 µs with a theoretical limit in the sub microsecond range. We used the PT-SLM to perform quantitative phase imaging of sub-diffractional species to decipher the 3D nanoscopic displacement of microtubules and study the trajectory of a diffusive microtubule-associated protein, providing insights into the mechanism of protein navigation through a complex microtubule network.
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Affiliation(s)
- Hadrien M L Robert
- Institute of Photonics and Electronics of the Czech Academy of Sciences, Prague, 18251, Czech Republic
| | - Kristýna Holanová
- Institute of Photonics and Electronics of the Czech Academy of Sciences, Prague, 18251, Czech Republic
| | - Łukasz Bujak
- Institute of Photonics and Electronics of the Czech Academy of Sciences, Prague, 18251, Czech Republic
| | - Milan Vala
- Institute of Photonics and Electronics of the Czech Academy of Sciences, Prague, 18251, Czech Republic
| | - Verena Henrichs
- Institute of Biotechnology of the Czech Academy of Sciences, BIOCEV, Vestec, Prague West, 25250, Czech Republic
| | - Zdeněk Lánský
- Institute of Biotechnology of the Czech Academy of Sciences, BIOCEV, Vestec, Prague West, 25250, Czech Republic
| | - Marek Piliarik
- Institute of Photonics and Electronics of the Czech Academy of Sciences, Prague, 18251, Czech Republic.
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40
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Nakayama B, Nakabayashi T, Esashika K, Hiruta Y, Saiki T. Interference-based wide-range dynamic tuning of the plasmonic color of single gold nanoparticles. OPTICS EXPRESS 2021; 29:15001-15012. [PMID: 33985209 DOI: 10.1364/oe.422564] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Accepted: 04/19/2021] [Indexed: 06/12/2023]
Abstract
Dynamic tuning of nanoscale coloration by exploiting localized surface plasmon resonance of gold nanoparticles (AuNPs) combined with an interference coloration mechanism is demonstrated experimentally. When interference between the scattering field from AuNPs and the reflected field from the substrate is observed under back-scattering white-light microscopy, the AuNPs exhibit various colors depending on their distance to the substrate. When the numerical aperture of the microscope objective is optimized, much greater coverage of the color space than was achieved with previously reported plasmon-based approaches is attained. Also, color tunability is examined by exploiting the temperature-induced volume change of a temperature-responsive hydrogel with embedded AuNPs to dynamically modify the distance to the substrate.
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41
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Utterback JK, Sood A, Coropceanu I, Guzelturk B, Talapin DV, Lindenberg AM, Ginsberg NS. Nanoscale Disorder Generates Subdiffusive Heat Transport in Self-Assembled Nanocrystal Films. NANO LETTERS 2021; 21:3540-3547. [PMID: 33872014 DOI: 10.1021/acs.nanolett.1c00413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Investigating the impact of nanoscale heterogeneity on heat transport requires a spatiotemporal probe of temperature on the length and time scales intrinsic to heat navigating nanoscale defects. Here, we use stroboscopic optical scattering microscopy to visualize nanoscale heat transport in disordered films of gold nanocrystals. We find that heat transport appears subdiffusive at the nanoscale. Finite element simulations show that tortuosity of the heat flow underlies the subdiffusive transport, owing to a distribution of nonconductive voids. Thus, while heat travels diffusively through contiguous regions of the film, the tortuosity causes heat to navigate circuitous pathways that make the observed mean-squared expansion of an initially localized temperature distribution appear subdiffusive on length scales comparable to the voids. Our approach should be broadly applicable to uncover the impact of both designed and unintended heterogeneities in a wide range of materials and devices that can affect more commonly used spatially averaged thermal transport measurements.
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Affiliation(s)
- James K Utterback
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Aditya Sood
- Stanford Institute for Materials and Energy Sciences, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Igor Coropceanu
- Department of Chemistry and James Franck Institute, University of Chicago, Chicago, Illinois 60637, United States
| | - Burak Guzelturk
- Stanford Institute for Materials and Energy Sciences, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
- Department of Materials Science and Engineering, Stanford University, Stanford, California 94305, United States
| | - Dmitri V Talapin
- Department of Chemistry and James Franck Institute, University of Chicago, Chicago, Illinois 60637, United States
| | - Aaron M Lindenberg
- Stanford Institute for Materials and Energy Sciences, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
- Department of Materials Science and Engineering, Stanford University, Stanford, California 94305, United States
- The PULSE Institute for Ultrafast Energy Science, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
- Department of Photon Science, Stanford University, Menlo Park, California 94025, United States
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Naomi S Ginsberg
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- STROBE, National Science Foundation Science and Technology Center, University of California Berkeley, Berkeley, California 94720, United States
- Department of Physics, University of California Berkeley, Berkeley, California 94720, United States
- Materials Science Division and Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Kavli Energy NanoSciences Institute at Berkeley, Berkeley, California 94720, United States
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42
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Xu Y, Meng Y, Zhou S, Zhang W. Interferometric scattering of a single plasmonic nanoparticle cluster assembled in a nanostructured template. OPTICS EXPRESS 2021; 29:12976-12983. [PMID: 33985043 DOI: 10.1364/oe.420801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2021] [Accepted: 04/05/2021] [Indexed: 06/12/2023]
Abstract
In this work, we investigate the light scattering of a single Au nanoparticle cluster assembled in a nanostructured substrate and study how the substrate geometry influences the scattering spectrum. An explicit model was built with the help of the Green's tensor theory, showing that there are two distinct types of substrate effects, namely, the interferometric scattering caused by the local corrugation and the spectral modulation caused by the global features (i.e., the layered substrate in this work). The result predicted by the model agrees with the experimental results well, providing a simple yet quantitative tool for the spectral interpretation of plasmonic nanostructures with complex substrates.
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43
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Label-free, mass-sensitive single-molecule imaging using interferometric scattering microscopy. Essays Biochem 2021; 65:81-91. [PMID: 33296454 DOI: 10.1042/ebc20200023] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2020] [Revised: 11/11/2020] [Accepted: 11/16/2020] [Indexed: 12/27/2022]
Abstract
Single-molecule imaging has mostly been restricted to the use of fluorescence labelling as a contrast mechanism due to its superior ability to visualise molecules of interest on top of an overwhelming background of other molecules. Recently, interferometric scattering (iSCAT) microscopy has demonstrated the detection and imaging of single biomolecules based on light scattering without the need for fluorescent labels. Significant improvements in measurement sensitivity combined with a dependence of scattering signal on object size have led to the development of mass photometry, a technique that measures the mass of individual molecules and thereby determines mass distributions of biomolecule samples in solution. The experimental simplicity of mass photometry makes it a powerful tool to analyse biomolecular equilibria quantitatively with low sample consumption within minutes. When used for label-free imaging of reconstituted or cellular systems, the strict size-dependence of the iSCAT signal enables quantitative measurements of processes at size scales reaching from single-molecule observations during complex assembly up to mesoscopic dynamics of cellular components and extracellular protrusions. In this review, I would like to introduce the principles of this emerging imaging technology and discuss examples that show how mass-sensitive iSCAT can be used as a strong complement to other routine techniques in biochemistry.
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44
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Kashkanova AD, Shkarin AB, Mahmoodabadi RG, Blessing M, Tuna Y, Gemeinhardt A, Sandoghdar V. Precision single-particle localization using radial variance transform. OPTICS EXPRESS 2021; 29:11070-11083. [PMID: 33820226 DOI: 10.1364/oe.420670] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Accepted: 03/03/2021] [Indexed: 06/12/2023]
Abstract
We introduce an image transform designed to highlight features with high degree of radial symmetry for identification and subpixel localization of particles in microscopy images. The transform is based on analyzing pixel value variations in radial and angular directions. We compare the subpixel localization performance of this algorithm to other common methods based on radial or mirror symmetry (such as fast radial symmetry transform, orientation alignment transform, XCorr, and quadrant interpolation), using both synthetic and experimentally obtained data. We find that in all cases it achieves the same or lower localization error, frequently reaching the theoretical limit.
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45
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Vibrational Spectroscopic Detection of a Single Virus by Mid-Infrared Photothermal Microscopy. Anal Chem 2021; 93:4100-4107. [DOI: 10.1021/acs.analchem.0c05333] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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46
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Itoh T, Yamamoto YS. Between plasmonics and surface-enhanced resonant Raman spectroscopy: toward single-molecule strong coupling at a hotspot. NANOSCALE 2021; 13:1566-1580. [PMID: 33438716 DOI: 10.1039/d0nr07344j] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The purpose of this minireview is to build a bridge between two research fields: surface-enhanced resonant Raman spectroscopy (SERRS) under near-single-molecule conditions and the branch of plasmonics treating strong coupling between plasmons and molecular excitons. SERRS enables single-molecule spectroscopy owing to its significant enhancement at SERRS hotspots (HSs), localized at gaps or junctions between plasmonic nanoparticle aggregates. SERRS is SERS (surface enhanced Raman spectroscopy) under a resonant Raman excitation condition. The origin of the Raman enhancement in SERRS is electromagnetic coupling between plasmons and molecular excitons at HSs. It has been reported that the coupling energy at HSs reaches the strong coupling region, meaning that they are potential platforms for applications of single molecular excitons modified by strong coupling. In this review, we discuss recent progress related to electronic strong coupling in near-single-molecule SERRS: collective (e.g., vibrational) strong coupling is out of the scope of this minireview. First, we explain the relationship between the electromagnetic enhancement factor and coupling energy. Second, we introduce three theoretical methods for obtaining evidence of strong coupling at HSs. Third, we discuss a method for reproducing enhanced and modified molecular Raman and fluorescence spectra at HSs using the coupling energy. Finally, we propose the use of two experimental methods of absorption spectroscopy at HSs for modifying molecular electronic dynamics by strong coupling and comment on future applications of SERRS HSs to photophysics and photochemistry.
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Affiliation(s)
- Tamitake Itoh
- Health and Medical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Takamatsu, Kagawa 761-0395, Japan.
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47
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Mass-sensitive particle tracking to elucidate the membrane-associated MinDE reaction cycle. Nat Methods 2021; 18:1239-1246. [PMID: 34608318 PMCID: PMC8490154 DOI: 10.1038/s41592-021-01260-x] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Accepted: 08/03/2021] [Indexed: 02/08/2023]
Abstract
In spite of their great importance in biology, methods providing access to spontaneous molecular interactions with and on biological membranes have been sparse. The recent advent of mass photometry to quantify mass distributions of unlabeled biomolecules landing on surfaces raised hopes that this approach could be transferred to membranes. Here, by introducing a new interferometric scattering (iSCAT) image processing and analysis strategy adapted to diffusing particles, we enable mass-sensitive particle tracking (MSPT) of single unlabeled biomolecules on a supported lipid bilayer. We applied this approach to the highly nonlinear reaction cycles underlying MinDE protein self-organization. MSPT allowed us to determine the stoichiometry and turnover of individual membrane-bound MinD/MinDE protein complexes and to quantify their size-dependent diffusion. This study demonstrates the potential of MSPT to enhance our quantitative understanding of membrane-associated biological systems.
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48
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Adhikari S, Spaeth P, Kar A, Baaske MD, Khatua S, Orrit M. Photothermal Microscopy: Imaging the Optical Absorption of Single Nanoparticles and Single Molecules. ACS NANO 2020; 14:16414-16445. [PMID: 33216527 PMCID: PMC7760091 DOI: 10.1021/acsnano.0c07638] [Citation(s) in RCA: 57] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
The photothermal (PT) signal arises from slight changes of the index of refraction in a sample due to absorption of a heating light beam. Refractive index changes are measured with a second probing beam, usually of a different color. In the past two decades, this all-optical detection method has reached the sensitivity of single particles and single molecules, which gave birth to original applications in material science and biology. PT microscopy enables shot-noise-limited detection of individual nanoabsorbers among strong scatterers and circumvents many of the limitations of fluorescence-based detection. This review describes the theoretical basis of PT microscopy, the methodological developments that improved its sensitivity toward single-nanoparticle and single-molecule imaging, and a vast number of applications to single-nanoparticle imaging and tracking in material science and in cellular biology.
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Affiliation(s)
- Subhasis Adhikari
- Huygens−Kamerlingh
Onnes Laboratory, Leiden University, 2300 RA Leiden, The Netherlands
| | - Patrick Spaeth
- Huygens−Kamerlingh
Onnes Laboratory, Leiden University, 2300 RA Leiden, The Netherlands
| | - Ashish Kar
- Chemistry
Discipline, Indian Institute of Technology
Gandhinagar, Palaj, Gujrat 382355, India
| | - Martin Dieter Baaske
- Huygens−Kamerlingh
Onnes Laboratory, Leiden University, 2300 RA Leiden, The Netherlands
| | - Saumyakanti Khatua
- Chemistry
Discipline, Indian Institute of Technology
Gandhinagar, Palaj, Gujrat 382355, India
| | - Michel Orrit
- Huygens−Kamerlingh
Onnes Laboratory, Leiden University, 2300 RA Leiden, The Netherlands
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49
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Kurochkin NS, Eliseev SP, Gritsienko AV, Sychev VV, Vutukhnovsky AG. Silver nanoparticle on aluminum mirror: active spectroscopy and decay rate enhancement. NANOTECHNOLOGY 2020; 31:505206. [PMID: 33021216 DOI: 10.1088/1361-6528/abb629] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Recent advances in nanotechnology and optics have paved the way for new plasmonic devices. One of them are nanopatch antennas that are simple and, at the same time, effective devices for localizing the electromagnetic field on a scale of less than 10 nm and can be used in photonic integrated circuits as effective sources of photons, including single-photon sources. In the present study, we investigate the radiative characteristics of a submonolayer of colloidal CdSe/CdS quantum dots that form island structures in a resonator: a cubic silver nanoparticle on an aluminum mirror. For detecting plasmonic nanoparticles on glass or metal surfaces, we propose a new technique involving a tunable laser and a confocal microscope. We provide a comparative study of the luminescence enhancement factors for QDs in the NPAs upon off-resonance excitation and at a wavelength close to the resonance; a significant difference in the luminescence enhancement factors (by order of magnitude) is demonstrated. A 60-fold reduction in the spontaneous emission time, as well as an increase in the radiation intensity by a factor of 330, has been obtained in the experiments. The increase in the spontaneous emission rate demonstrated for the quantum dots is explained by the Purcell effect. Full-wave simulations of electromagnetic fields were carried out for the model of the developed nanopatch antenna; luminescence enhancement factors and radiative efficiencies were calculated as well.
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Affiliation(s)
- N S Kurochkin
- Moscow Institute of Physics and Technology (State University), 9 Institutskiy per., 141701 Dolgoprudny, Moscow Region, Russia
- P.N. Lebedev Physical Institute of the Russian Academy of Sciences, 53 Leninskiy pr., 119991 Moscow, Russia
| | - S P Eliseev
- Moscow Institute of Physics and Technology (State University), 9 Institutskiy per., 141701 Dolgoprudny, Moscow Region, Russia
- P.N. Lebedev Physical Institute of the Russian Academy of Sciences, 53 Leninskiy pr., 119991 Moscow, Russia
| | - A V Gritsienko
- Moscow Institute of Physics and Technology (State University), 9 Institutskiy per., 141701 Dolgoprudny, Moscow Region, Russia
- P.N. Lebedev Physical Institute of the Russian Academy of Sciences, 53 Leninskiy pr., 119991 Moscow, Russia
| | - V V Sychev
- Moscow Institute of Physics and Technology (State University), 9 Institutskiy per., 141701 Dolgoprudny, Moscow Region, Russia
- P.N. Lebedev Physical Institute of the Russian Academy of Sciences, 53 Leninskiy pr., 119991 Moscow, Russia
| | - A G Vutukhnovsky
- Moscow Institute of Physics and Technology (State University), 9 Institutskiy per., 141701 Dolgoprudny, Moscow Region, Russia
- P.N. Lebedev Physical Institute of the Russian Academy of Sciences, 53 Leninskiy pr., 119991 Moscow, Russia
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50
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Park JS, Lee IB, Moon HM, Ryu JS, Kong SY, Hong SC, Cho M. Fluorescence-Combined Interferometric Scattering Imaging Reveals Nanoscale Dynamic Events of Single Nascent Adhesions in Living Cells. J Phys Chem Lett 2020; 11:10233-10241. [PMID: 33206530 DOI: 10.1021/acs.jpclett.0c02103] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Focal adhesions (FAs) are dynamic protein nanostructures that form mechanical links between cytoskeletal actin fibers and the extracellular matrix. Here, we demonstrate that interferometric scattering (iSCAT) microscopy, a high-speed and time-unlimited imaging technique, can uncover the real-time dynamics of nanoscopic nascent adhesions (NAs). The high sensitivity and stability of the iSCAT signal enabled us to trace the whole life span of each NA spontaneously nucleated under a lamellipodium. Such high-throughput and long-term image data provide a unique opportunity for statistical analysis of adhesion dynamics. Moreover, we directly revealed that FAs play critical roles in both the extrusion of filopodia as nucleation sites on the leading edge and the one-dimensional transport of cargos along cytoskeletal fibers as fiber docking sites. These experimental results show that iSCAT is a sensitive tool for tracking real-time dynamics of nanoscopic objects involved in endogenous and exogenous biological processes in living cells.
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Affiliation(s)
- Jin-Sung Park
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul 02841, Korea
| | - Il-Buem Lee
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul 02841, Korea
| | - Hyeon-Min Moon
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul 02841, Korea
| | - Jin-Sun Ryu
- Center for Breast Cancer, National Cancer Center, Goyang 10408, Korea
| | - Sun-Young Kong
- Division of Translational Science, National Cancer Center, Goyang 10408, Korea
| | - Seok-Cheol Hong
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul 02841, Korea
- Department of Physics, Korea University, Seoul 02841, Korea
| | - Minhaeng Cho
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul 02841, Korea
- Department of Chemistry, Korea University, Seoul 02841, Korea
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