Root traits as drivers of plant and ecosystem functioning: current understanding, pitfalls and future research needs

Seedling growth rate and root traits in the maize Nested Association Mapping (NAM) panel

This paper characterizes variation in shoot and root traits collected from the founders of the Maize Nested Association Mapping panel, which was designed to maximize genetic diversity while ensuring appropriate flowering in eastern North America. Here, we present a detailed account of greenhouse experiments conducted by four cohorts of undergraduate research interns at the University of Hawai'i at Mānoa. We summarize data collection, data cleaning procedures, and present data for 38 phenotypic variables for 24 genotypes with the number of plant replicates ranging from 3 to 20. The genotype B73 served as our experimental control to enable comparison over the four years. We also grew a subset of genotypes under different abiotic stress treatments to assess the phenotypic plasticity. These data can be used to predict the potential for different lines to function and capacity to adapt to different environments. Data are published on GitHub repositories, and have large reuse potential by the scientific community, as well as educators of undergraduate and graduate instruction.

Hidden aging: the secret role of root senescence

Root age-dependent processes have remained poorly understood. Here, we define root age-related terms in their eco-/physiological context, provide a synthesis of read-outs and traits characterizing root senescence in different root types, and follow their modulation in the light of metabolic, hormonal, and genetic control. Evidence for an endogenously regulated senescence program in roots includes changes in root anatomy, metabolism, and color, decrease in root activity, increasing levels of stress-related hormones, and increasing expression of certain transcription factors (TFs) or genes involved in oxidative stress defense. Uncovering the genetic regulation of the developmental program steering root senescence is of great importance to establish a balanced view on whole-plant aging and improve resource efficiency in crops.

Pressure-volume curves of fine roots reveal intraspecific variation across different elevations in a subalpine forest

Water conservation in fine roots can be important for the adaptation of trees to cold, nutrient-poor ecosystems. Although pressure-volume (p-v) curve traits are commonly used to assess leaf water conservation, little is known about their intraspecific variation in fine roots and their association with root functional traits, such as morphology and chemistry. Here, we aimed to determine the p-v curve traits of Betula ermanii and Abies mariesii fine roots at 2,000 and 2,500 m elevations and explore their intraspecific variation with root morphological and chemical traits in a subalpine forest. Turgor loss point (πtlp), relative water content at πtlp, osmotic potential at full hydration, and capacitance at full turgor (Cft) were evaluated as p-v curve traits. Additionally, root diameter, specific root length, and root tissue density (RTD) were assessed as morphological traits, and nitrogen (N) content was measured as a chemical trait. For A mariesii roots, the Cft was lower, and πtlp was more negative at 2,500 m than at 2,000 m. The p-v curve traits of B ermanii roots remained unchanged with elevation. There were strong correlations between RTD and πtlp and between N content and πtlp and Cft, especially for A. mariesii. These results indicated A. mariesii adjusted p-v curve traits with RTD and N content and achieved water conservation in fine roots at higher elevations. The p-v curve traits, particularly πtlp and Cft, reflected diverse tree strategies for environmental acclimation with fine-root carbon economy. Our findings highlighted the importance of adjusting water relation traits for acclimation to cold and nutrient-poor subalpine regions, particularly for evergreen coniferous species. The p-v curve traits revealed diverse fine-root water relation traits as a basis for water conservation capacity by preserving root function under stress conditions and enabling prolonged resource acquisition in a subalpine forest.

A 50-year look-back on the efficacy of limited transpiration traits: does the evidence support the recent surge in interest?

We examine limited transpiration (LT) traits in crop species, which are claimed to conserve early season water for critical late season growth. Despite there being theoretical support for LT crops, we suggest that there is insufficient empirical evidence to support the general acceptance of this theory. Our criticism focuses on two main points: the undervaluation of early season carbon assimilation and investment over the lifetime of the plant; and the overestimation of soil water savings. We argue that forgoing early season water use, and therefore also future investment in deeper and denser roots (improved resource acquisition), will negatively impact plant performance in many soil and climate contexts. Furthermore, we challenge the assumption that conserved soil water remains available for later use without loss, noting significant losses resulting from evaporation and other sinks. We advocate for a re-evaluation of LT traits, incorporating a balance of water and carbon dynamics throughout a plant's lifetime. We caution against the adoption of LT traits where they have not been empirically evaluated in the soils and climates of interest to individual research and breeding programs. We propose a more physiologically integrated approach to crop improvement, focusing on water extraction efficiency and strategic carbon investment.

Effects of bacterial fertilizer and soil amendment on Spuriopinella brachycarpa (Kom.) Kitag. growth and soil microbiota

Introduction

Spuriopinella brachycarpa (Kom.) Kitag. is a nutritious wild vegetable, but its quality deteriorates during artificial cultivation due to soil condition alterations. Microbial fertilizers and soil amendments hold promise for improving cultivation outcomes, yet their combined effects remain under - explored.

Methods

A field experiment was conducted with seven treatments, including a control (CK) and six combinations of Trichoderma harzianum, Bacillus subtilis, and earthworm polysaccharide. Plant samples were analyzed for yield, quality, and root architecture, while soil samples were tested for fertility and microbial community characteristics.

Results

Treatments T3 (dual bacterial fertilizers) and T6 (dual bacterial fertilizers + soil amendment) significantly enhanced yield, nutritional quality, and root development. T6 also maintained high soil fertility and optimized the soil microbial community in terms of richness, diversity, and beneficial species abundance.

Discussion

The positive effects of T3 and T6 are likely due to the synergy between the bacterial fertilizers and the soil amendment, which improves nutrient cycling, soil structure, and microbial functions. However, the study has limitations, such as the need for long - term research and more in - depth exploration of microbial functions.

MicroRNAs in Plants Development and Stress Resistance

Plant growth and development are governed by a rigorously timed sequence of ontogenetic programmes. MicroRNAs (miRNAs), a class of short noncoding RNAs, function as master regulators of gene expression by targeting mRNAs for cleavage or direct translational inhibition at the posttranscriptional level in eukaryotes. Numerous miRNA molecules that control significant agronomic properties in plants have been found. On the one hand, miRNAs target transcription factors (TFs) to determine plant structure, such as root development, internode elongation, leaf morphogenesis, sex determination and nutrient transition. On the other hand, miRNAs alter expression levels to adapt to biological and abiotic stresses, including fungi, bacteria, viruses, drought, waterlogging, high temperature, low temperature, salinity, nutrient deficiencies, heavy metals and other abiotic stresses. To fully understand the role of miRNAs in plants, we review the regulatory role of miRNAs in plant development and stress resistance. Beyond that, we propose that the novel miRNA in review can be effectively further studied with artificial miRNA (amiRNA) or short tandem target mimics (STTM) and miRNA delivery in vitro can be used to improve crop yield and agricultural sustainability.

A systematic review to identify target genes that modulate root system architecture in response to abiotic stress

The exposure of plant roots to soil-related stresses, including drought, high temperatures, salinization, and nutrient deficiency, is on the rise due to climate change caused by human activities. A systematic literature review was conducted, which revealed evidence for conserved genes that modulate root system architecture under specific stress conditions. A collection of Arabidopsis thaliana mutants displaying a root phenotype distinct from the wild type is available in The Arabidopsis Information Resource database. Gene expression data was gathered for specific genes in response to selected abiotic stress treatments. K-means clustering, and fold change analyses identified 118 genes that were upregulated and 185 genes that were downregulated. A dedicated phenotyping approach was used to ascertain that lack of nutrients induced the transition from a 'steep, cheap, and deep' root morphotype to a 'topsoil foraging' root morphotype in the Columbia- 0 reference genotype. The anticipated role of ISOPENTENYLTRANSFERASE 3, LIPOXYGENASE 1, and WEE1 KINASE HOMOLOG as negative regulators of root growth in response to multiple stress signals was assayed. Further research with the candidate genes identified in this study may reveal promising targets for crop improvement.

Soil biome variation of Lupinus nipomensis in wet-cool vs. dry-warm microhabitats and greenhouse

PREMISE

Environmental DNA (eDNA) can be used to determine the composition of the soil biome community, revealing beneficial and antagonistic microbes and invertebrates associated with plants. eDNA analyses can complement traditional soil community studies, offering more comprehensive information for conservation practitioners. Studies are also needed to examine differences between field and greenhouse soil biomes because greenhouse-grown plants are often transplanted in the field during restoration efforts.

METHODS

We used eDNA multilocus metabarcoding to test how the soil biome of the federally and state-endangered species, Lupinus nipomensis, differed between wet-cool and dry-warm microhabitats. At Arroyo Grande, California, 20 experimental plots were sampled, representing a factorial combination of wet-cool vs. dry-warm soil and plots that did or did not contain L. nipomensis. In a simultaneous greenhouse study, L. nipomensis was grown in drought and well-watered conditions to compare soil communities between field and greenhouse.

RESULTS

A diversity of carbon-cycling microorganisms but not nitrogen-fixers were overrepresented in the field, and nitrogen-fixing bacteria were overrepresented in some greenhouse treatments. The microbial communities in the field soils were more species-rich and evenly distributed than in greenhouse communities. In field plots, microhabitats significantly influenced community beta diversity, while field plots with or without L. nipomensis had no significant differences in alpha or beta diversity.

CONCLUSIONS

Our study shows the utility of eDNA soil analysis in elucidating soil biome community differences for conservation and highlights the influence of plant microhabitats on soil microbe associations.

Variation of root resource acquisition and conservation strategies in a temperate forest is linked with plant growth forms

Exploring why species of different plant growth forms can coexist in the same forest is critical for understanding the long-term community stability, but is poorly studied from root ecological strategies. The aim of this study was to explore the variation of root functional traits among different growth forms and their distribution patterns in root economics space to clarify how plant growth forms affect the root resource acquisition strategies of co-occurring species in a forest community. We sampled 115 co-occurring species with five growth forms (i.e., trees, shrubs, lianas, herbs and ferns) from a mega-plot (>50 ha) in temperate forest and measured seven root functional traits, including root morphological, anatomical and chemical traits, that are closely associated with root resource foraging and conservation strategies. We found that root specific length (SRL) and tissue density (RTD) showed wider variations than other traits among the five growth forms. Moreover, compared with clade and mycorrhizal type, variations of SRL and RTD were largely attributed to growth forms. Importantly, 115 co-occurring species were separately aggregated by growth forms along the trade-off dimension of SRL and RTD in root economics space, suggesting the diversity in root resource acquisition strategies at a local forest community is linked to plant growth forms. In particular, herbs were concentrated towards the side of high SRL and RN, by contrast, trees, shrubs and ferns were positioned at the side of high RTD and carbon/nitrogen, and lianas were located towards the middle. Diverse root resource acquisition strategies in plant growth forms allow them to occupy specific belowground ecological niches, thereby relieving the competition for the common resource. These findings advance our understanding of the mechanism for maintaining community species coexistence from a below-ground perspective.

Subsurface Drip Irrigation Combined with Ammonium Enhances Root Growth in Rice (Oryza sativa L.), Leading to Improved N Uptake and Higher Yield Formation

Coordinating the spatial distribution of crop roots with soil nutrients, along with selecting appropriate types of fertilizers, is an effective strategy to enhance root nutrient absorption and increase crop yield. In Xinjiang's current surface drip irrigation practices for rice (Oryza sativa L.), premature leaf senescence and N deficiency are common issues, resulting in decreased yields. This study investigated whether different N forms under subsurface drip irrigation can modulate rice root morphological strategies to delay senescence in later growth stages, enhancing rice N uptake and yield formation. A field experiment compared the effects of different drip irrigation positions (surface drip irrigation at the surface, DI0; subsurface drip irrigation at 10 cm depth, DI10) and N forms (urea N, UN; ammonium N, AN) in four combination treatments (DI0-UN, DI0-AN, DI10-UN, DI10-AN) on rice root morphology, aboveground growth, and yield formation. During the grain-filling stage, the total root length (RL) and root number (RN) in the DI10-AN treatment were higher than in other treatments. Root vitality increased by 23.24-133.72% during the later filling stages, while the root decline rate decreased by 1.16-32.80%. The root configuration parameters β in the DI10-AN treatment were superior to those in other treatments, indicating that roots tend to distribute deeper in the soil. The DI10-AN treatment reduced Malondialdehyde (MDA) levels and increased Superoxide Dismutase (SOD) activity, thereby alleviating water and N stress on the leaves in later growth stages and maintaining higher photosynthetic parameter values. The DI10-AN treatment significantly increased N absorption (14.37-52.88%) and yield (13.32-46.31%). Correlation analysis showed that RL, RN, and root activity (Ra) were significantly positively correlated with transpiration rate (Tr), intercellular CO2 concentration (Ci), N uptake (NUP), one thousand-kernel weight (TKW), seed setting rate (SR), Efficient panicle (EP), and yield (r > 0.90). This study presents a new rice drip fertigation technique that combines subsurface irrigation with ammonium to enhance root growth and increase crop productivity.

Seasonal Variation in Root Morphological Traits and Non-Structural Carbohydrates of Pinus yunnanensis Seedlings Across Different Seedling Orders

Non-structural carbohydrates (NSCs), comprising soluble sugars (SS) and starch (ST), are essential for plant growth and development. The distribution of SS and ST concentration across various organs fluctuates throughout time due to the changes in root morphology in plants, ultimately demonstrating multiple strategies for adapting to seasonal environmental variations. The purpose of this investigation was to explore the seasonal dynamic patterns of root morphology in Pinus yunnanensis, with particular emphasis on specific root length (SRL), specific root surface area (SRA), root tissue density (RTD), and average diameter (AD). This study also aimed to investigate the seasonal fluctuation patterns of NSC. The SRL, SRA, RTD, and AD in both first-order and second-order seedlings had analogous fluctuation patterns from March to December. Although the SRL, SRA, RTD, and AD of third-order seedlings exhibited minor differences from the preceding orders, the overall variance patterns corresponded with those of the first two seedling groups. Consequently, the seasonal fluctuations in SS, ST, and NSC levels in various seedling orders exhibited patterns similar to root morphological characteristics. The SRL, SRA, and AD of three seedling orders exhibited a significant correlation with SS, ST, and NSC, confirming the link between NSC concentration and root morphology. The responses of SS, ST, and NSC in various organs of P. yunnanensis seedlings to root morphological characteristics further substantiated the correlation between the variations in NSC across different organs and root morphological traits.

Individual Versus Combined Effects of Warming, Elevated CO2 and Drought on Grassland Water Uptake and Fine Root Traits

Increasing warming, atmospheric CO2 and drought are expected to change the water dynamics of terrestrial ecosystems. Yet, limited knowledge exists about how the interactive effects of these factors will affect grassland water uptake, and whether adaptations in fine root production and traits will alter water uptake capacity. In a managed C3 grassland, we tested the individual and combined effects of warming (+3°C), elevated CO2 (eCO2; +300 ppm) and drought on root water uptake (RWU) as well as on fine root production, trait adaptation, and fine root-to-shoot production ratios, and their relationships with RWU capacity. High temperatures, amplified by warming, exacerbated RWU reductions under drought, with negligible water-sparing effects from eCO2. Drought, both under current and future (warming, eCO2) climatic conditions, shifted RWU towards deeper soil layers. Overall, RWU capacity related positively to fine root production and specific root length (SRL), and negatively to mean root diameters. Warming effects on traits (reduced SRL, increased diameter) and the ratio of fine root-to-shoot production (increased) were offset by eCO2. We conclude that under warmer future conditions, irrespective of shifts in water sourcing, it is particularly hot droughts that will lead to increasingly severe restrictions of grassland water dynamics.

Effects of polyculture on nutrient removal from residential raw sewage using field-scale artificial floating islands

Nutrient pollution poses a significant challenge to global water bodies, particularly from non-point sources due to their diffuse nature. This study investigated the effectiveness of Artificial Floating Islands (AFIs) as a phytoremediation technology to address this issue. We constructed and monitored a field-scale AFI system in the equalization basin of a wastewater treatment plant for preliminary treatment of residential raw sewage. Focusing on a polyculture of two native aquatic plants - Carex comosa (bristly sedge) and Eleocharis obtusa (blunt spike-rush) - we assessed how polyculture influenced nutrient assimilation and evaluated the overall performance of polyculture AFI systems under natural conditions. Our results showed that polyculture simultaneously affected plants' capacity of nutrient assimilation and biomass production. The potential competition within the polyculture systems promoted the growth of C. comosa while suppressing E. obtusa. The enhanced nutrient assimilation in C. comosa plant tissues was mainly attributed to its increased biomass production. Additionally, we observed a negative correlation between pH and the storage of total oxidized nitrogen (NO2- + NO3-), ammonium (NH4+), and orthophosphate (PO43-), with the highest nutrient storage occurring at a near-neutral pH of 7.5. Environmental factors such as pH and water temperature interacted with the effects of polyculture on nutrient assimilation, with C. comosa in polyculture systems showing the highest sensitivity to these factors. Throughout the study, polyculture AFIs exhibited the highest nutrient assimilation, with peak values of 2968 mg/m2 for NH4+, 1767 mg/m2 for PO43-, and 12 mg/m2 for NO2- + NO3-, outperforming the two monoculture AFIs. Notably, nutrient assimilation in polyculture AFI systems did not average the performance of monoculture systems but demonstrated higher values and greater robustness under varying environmental conditions. These findings highlight the potential of using polyculture to extend the operational lifespan, enhance performance, and reduce the constructional costs of field-scale AFI systems for managing nutrient pollution.

An integrated fast-slow plant and nematode economics spectrum predicts soil organic carbon dynamics during natural restoration

Aboveground and belowground attributes of terrestrial ecosystems interact to shape carbon (C) cycling. However, plants and soil organisms are usually studied separately, leading to a knowledge gap regarding their coordinated contributions to ecosystem C cycling. We explored whether integrated consideration of plant and nematode traits better explained soil organic C (SOC) dynamics than plant or nematode traits considered separately. Our study system was a space-for-time natural restoration chronosequence following agricultural abandonment in a subtropical region, with pioneer, early, mid and climax stages. We identified an integrated fast-slow trait spectrum encompassing plants and nematodes, demonstrating coordinated shifts from fast strategies in the pioneer stage to slow strategies in the climax stage, corresponding to enhanced SOC dynamics. Joint consideration of plant and nematode traits explained more variation in SOC than by either group alone. Structural equation modeling revealed that the integrated fast-slow trait spectrum influenced SOC through its regulation of microbial traits, including microbial C use efficiency and microbial biomass. Our findings confirm the pivotal role of plant-nematode trait coordination in modulating ecosystem C cycling and highlight the value of incorporating belowground traits into biogeochemical cycling under global change scenarios.

Elevational variation in anatomical traits of the first-order roots and their adaptation mechanisms

Root anatomical traits play an important role in understanding the link between root physiological function and ecological process. To determine how plants change root anatomical traits to adapt to distinct environments, we measured four key root anatomical traits-stele diameter (SD), cortex thickness (CT), root diameter (RD), and the stele to root diameter ratio (SDRD)-of first-order roots of 82 species collected from different vegetation zones along a 2000 m altitudinal gradient on the northern slope of Taibai Mountain. Compared with other altitudes, plants located in temperate birch and fir forests had thinner SD, CT, RD, and SDRD. We found that elevational variation in root anatomical traits could largely be explained by phylogenetic taxonomy (clade). In addition, changes in SD were driven by soil bulk density, whereas variations in CT and RD were influenced by soil available nitrogen. When phylogenetic factors were removed from our analysis, allometric relationships between RD and root anatomical traits (SD and CT) were observed across different altitudes. Our study reveals the influence of phylogeny and environment on the elevational variation in root anatomical traits and further supports the allometric relationship between root anatomical traits (SD and CT) and RD. These findings enhance our understanding of the evolutionary and adaptive mechanisms of root anatomical structures, providing a basis for predicting how root anatomical traits respond to global changes.

Tree growth is better explained by absorptive fine root traits than by transport fine root traits

Although the interest in root traits has increased in recent years, we still have limited knowledge of (i) whether functionally different fine roots-absorptive versus transport roots-have similar trait coordination and (ii) how they help to explain plant performance, such as growth. We measured traits of 25 European broadleaved tree species growing in a research arboretum to study (i) the coordination of root traits within absorptive and transport fine roots and (ii) the degree of trait-tree growth relationships. To do so, we combined a suite of morphological and anatomical traits for each of the absorptive and transport roots. Despite remarkable differences in average trait values between absorptive and transport roots, our study shows that trait coordination within absorptive and transport roots is relatively similar. Our results also show that, for the selected traits, tree growth is better explained by absorptive root traits than by transport root traits and is higher in species with thinner roots. The stronger relationship between absorptive roots and tree growth highlights that roots mostly involved with resource absorption are more important in explaining tree growth than transport roots, which are mainly responsible for resource transportation.

The synergistic impact of Spirulina and Sulfate reducing bacteria on lettuce growth in Cadmium contaminated soil

Cadmium (Cd) contamination is a critical environmental issue, adversely affecting plant growth and agricultural productivity. While numerous studies have explored the role of various bacteria in mitigating heavy metal toxicity, the specific impacts of sulfate-reducing bacteria ( Desulfovibrio desulfuricans, SRB) and the cyanobacterium Spirulina (Arthrospira platensis, SP), both individually and in combination, on Cd-contaminated plants remain underexplored. This study investigates the effects of SRB and SP on lettuce plants exposed to Cd contamination, aiming to enhance our understanding of their potential in alleviating Cd toxicity and promoting plant health. Results revealed that Cd contamination significantly reduced root growth in all treatments except for the combined application of SRB and SP. This combination also led to a marked decrease in leaf Cd content and improved leaf area, particularly under Cd stress. Furthermore, SP and SRB together increased the relative water content in contaminated soils, and SRB alone induced hydrogen peroxide production in non-contaminated soils. The co-application of SRB and SP significantly boosted catalase and superoxide dismutase activities, enhancing photosynthetic capacity and overall plant growth under Cd stress. These findings underscore the promising potential of using SRB and SP synergistically to mitigate Cd-induced challenges in lettuce cultivation, offering a viable strategy to improve crop productivity in contaminated environments.

Influence of Cover Crop Root Functional Traits on Sweet Potato Yield and Soil Microbial Communities

The symbiotic relationship between cover crops and soil microorganisms is closely linked to nutrient cycling and crop growth within agroecosystems. However, how cover crops with different root functional traits influence soil microbial communities, soil properties, and crop yields has remained understudied. This study assessed the root traits of hairy vetch (HV) and rapeseed (RP), along with soil properties, sweet potato yield, and microbial enzyme activity under red soil dryland conditions. High-throughput sequencing was also employed to characterize the diversity, composition, and network structure of soil bacterial and fungal communities. According to the plant economic spectrum theory and our research results on plant root traits, HV can be identified as a resource-acquisitive cover crop, and RP treatment can be identified as a resource-conservative cover crop. Although RP treatment did not significantly increase the sweet potato yield, the increase rate reached 8.49%. Resource-conservative cover crops were associated with increased pH, SOC, and TP, which enhanced bacterial species diversity and boosted the populations of Chloroflexi and Alphaproteobacteria. In contrast, resource-acquisitive cover crops promoted the proliferation of Gammaproteobacteria. Network analysis indicated that resource-conservative cover crops facilitated network complexity through intensified intra-community competition. Resource-acquisitive cover crops enhanced the stability of microbial communities. Collectively, these findings underscore the distinct advantages of cover crops with varying root functional traits in shaping soil microbial communities. Appropriate cover crop rotations can effectively regulate microbial communities and hold the potential to enhance crop yield.

Arbuscular mycorrhizal colonization defines root ecological strategies in an extreme arid environment

The symbiosis between mycorrhizae fungi and plant roots is essential for plant establishment in nearly all terrestrial ecosystems. However, the role of mycorrhizal colonization (colM) in shaping root ecological strategies remains poorly understood. Emerging research identifies colM as a key trait influencing the multidimensional covariation of root traits within the Root Economic Space (RES), where a 'collaboration gradient' is proposed. At one end of this gradient, species with larger root diameters (RD) rely on colM for resource acquisition through an 'outsourcing' strategy, while at the other end, species with finer roots and greater exploration capacity employ a 'do it yourself' strategy to acquire resources independently. Although the RES framework has improved our understanding of root strategies, the relationship between colM and root traits in desert ecosystems remains underexplored, particularly in hyper-arid environments, where limited resources can constrain both plant and mycorrhizal survival. In this study, we examine the root ecological strategies of 32 dominant shrub species in Chile's Coastal Atacama Desert, focusing on the link between specific root traits and colM. We found that larger RD correlated with higher levels of colM, supporting the 'outsourcing' strategy within the 'collaboration gradient' hypothesis of the RES. Additionally, RD and colM emerged as playing key roles in defining both dimensions of root ecological strategies. Moreover, we identified colM as a central hub trait in the root phenotypic network, underscoring its role in survival strategies under hyper-arid conditions. These findings emphasize the critical importance of colM in modulating plant ecological strategies and highlight the need to further investigate how AM enhances root lifespan and optimizes resource uptake in extreme environments.

Root and mycorrhizal nutrient acquisition strategies in the succession of subtropical forests under N and P limitation

BACKGROUND

Nutrient limitation is a universal phenomenon in terrestrial ecosystems. Root and mycorrhizal are critical to plant nutrient absorption in nutrient-limited ecosystems. However, how they are modified by N and P limitations with advancing vegetation successions in karst forests remains poorly understood. The present study compared the diversity indices, composition, and co-occurrence network of arbuscular mycorrhizal fungi (AMF) between grassland, shrubland, shrub-tree forest, and tree forest in subtropical karst forests, as well as soil nutrients and fine root functional traits (e.g., specific root length (SRL), specific root area (SRA), diameter, biomass, and N and P contents).

RESULTS

The fine roots diameter, biomass, and N and P contents increased with advancing succession, whereas SRL and SRA decreased. Network complexity and Richness and Chao1 indices of AMF increased from grassland to shrub-tree forest but decreased in tree forest. The fine roots N and P contents were positively related to their diameter and biomass, soil nutrients, and AMF composition but were negatively correlated with SRL and SRA. Moreover, these two parameters increased with the increase of soil nutrients. The variations in fine roots N and P contents were mainly explained by soil nutrients and fine root functional traits in grassland and by the interactions of soil nutrients, fine root functional traits, and AMF in the other three stages. Additionally, the interactive explanation with AMF increased from shrubland to shrub-tree forest but decreased in tree forest.

CONCLUSIONS

Our results indicated that mycorrhizal strategy might be the main nutrient acquisition strategy under N and P co-limitation. In contrast, the root strategy is the main one when an individual is subject to limitations in N or P in karst ecosystems. Root and mycorrhizal nutrient acquisition strategies are generally mutualistic, mycorrhizal strategy enhances plant nutrient acquisition under N and P co-limitation.

Could flooding undermine progress in building climate-resilient crops?

Flooding threatens crop productivity, agricultural sustainability, and global food security. In this article I review the effects of flooding on plants and highlight three important gaps in our understanding: (i) effects of flooding on ecological interactions mediated by plants both below (changing root metabolites and exudates) and aboveground (changing plant quality and metabolites, and weakening the plant immune system), (ii) flooding impacts on soil health and microorganisms that underpin plant and ecosystems health, and (iii) the legacy impacts of flooding. Failure to address these overlooked aspects could derail and undermine the monumental progress made in building climate-resilient crops and soil-microbe-assisted plant resilience. Addressing the outlined knowledge gaps will enhance solutions developed to mitigate flooding and preserve gains made to date.

Scaling of shoot and root respiration of woody and herbaceous plants

Woody and herbaceous plants are the main components of global terrestrial ecosystems, and their growth, adaptation and survival depend largely on the metabolism of shoots and roots. Therefore, understanding size-scaling of metabolic rates in woody and herbaceous plants, and in shoots and roots, is a fundamental issue in ecology. However, few empirical studies have examined metabolic scaling exponents across a wide range of plant sizes. Using whole-plant chamber systems, we measured respiration rates of entire root systems and shoots of 96 woody species (n = 1243) and 33 herbaceous species (n = 463) from various terrestrial biomes, with plant masses spanning nine orders of magnitude. Scaling exponents for relationships between respiration rates and fresh mass were greater in shoots than in roots, and both were greater in herbaceous plants than in woody plants. Furthermore, scaling of whole-plant respiration, including various species, converged separately for woody and herbaceous plants. These findings suggest some general physico-chemical constraints on energy use by shoots and roots of individual plants in various terrestrial biomes, including forests and grasslands. These data will advance our understanding of terrestrial ecosystem structure and function.

Early overyielding in a mixed deciduous forest is driven by both above- and below-ground species-specific acclimatization

BACKGROUND AND AIMS

Mixed forest plantations are increasingly recognized for their role in mitigating the impacts of climate change and enhancing ecosystem resilience. Yet, there remains a significant gap in understanding the early-stage dynamics of species trait diversity and interspecies interactions, particularly in pure deciduous mixtures. This study aims to explore the timing and mechanisms by which trait diversity of deciduous species and competitive interactions influence yield, carbon allocation and space occupation in mixed forests, both above and below ground.

METHODS

A forest inventory was conducted in planted monocultures, two-species and four-species mixtures of European Acer, Tilia, Carpinus and Quercus, representing a spectrum from acquisitive to conservative tree species. Effects of competition were assessed with linear mixed-effects models at the level of biomass and space acquisition, including leaf, canopy, stem and fine root traits.

KEY RESULTS

Early above-ground growth effects were observed 6 years post-planting, with significant biomass accumulation after 8 years, strongly influenced by species composition. Mixtures, especially with acquisitive species, exhibited above-ground overyielding, 1.5-1.9 times higher than monocultures. Fine roots showed substantial overyielding in high-diversity stands. Biomass allocation was species specific and varied markedly by tree size and the level of diversity and between acquisitive Acer and the more conservative species. No root segregation was found.

CONCLUSIONS

Our findings underscore the crucial role of species trait diversity in enhancing productivity in mixed deciduous forest plantations. Allometric changes highlight the need to differentiate between (active) acclimatizations and (passive) tree size-related changes, but illustrate major consequences of competitive interactions for the functional relationship between leaves, stem and roots. This study points towards the significant contributions of both above- and below-ground components to overall productivity of planted mixed-species forests.

Outdoor mesoscale fabricated ecosystems: Rationale, design, and application to evapotranspiration

The disparity in scale, complexity, and control level between laboratory experiments and field observational studies has shaped both the methodologies employed and the nature of the research questions pursued in ecology and hydrology. While lysimeters and fabricated ecosystems suitably fit in this gap, their use as mesoscale experimental facilities has not been fully explored because of the limited manipulating capabilities and integration with imaging and monitoring methods, particularly for soil functioning. The proposed fabricated ecosystem (4.7 L × 1.2 W × 1.2 H m) focuses on the spatiotemporal integration of point sensors and imaging methods along the soil-plant-atmosphere continuum. Because energy and water fluxes are key environmental drivers, the designed setup was first applied to a multi-approach evapotranspiration investigation. Below the ground, electrical resistivity tomography (ERT) was combined with soil water sensors and a distributed temperature profiling system. Together, they provided the 3D monitoring of water and temperature changes, and thus an estimation of the evapotranspiration, as well as the interpretation of its below-ground controlling processes. Above-ground sensors supported a classical energy balance investigation that was compared with the lysimeter load changes and the ERT-based ET estimation. Our results provide first experimental evidence of water and temperature spatiotemporal variability at the lysimeter scale, and thus explain the discrepancies among the three estimated evapotranspiration time series and their seasonality. Beyond evapotranspiration, the multi-approach investigation of water and energy fluxes emphasizes how mesoscale setups can further support the development and upscaling of methods and models, as well as their integration and application under expected climate disturbances.

A Field-to-Parameter Pipeline for Analyzing and Simulating Root System Architecture of Woody Perennials: Application to Grapevine Rootstocks

Understanding root system architecture (RSA) is essential for improving crop resilience to climate change, yet assessing root systems of woody perennials under field conditions remains a challenge. This study introduces a pipeline that combines field excavation, in situ 3-dimensional digitization, and transformation of RSA data into an interoperable format to analyze and model the growth and water uptake of grapevine rootstock genotypes. Eight root systems of each of 3 grapevine rootstock genotypes ("101-14", "SO4", and "Richter 110") were excavated and digitized 3 and 6 months after planting. We validated the precision of the digitization method, compared in situ and ex situ digitization, and assessed root loss during excavation. The digitized RSA data were converted to root system markup language (RSML) format and imported into the CPlantBox modeling framework, which we adapted to include a static initial root system and a probabilistic tropism function. We then parameterized it to simulate genotype-specific growth patterns of grapevine rootstocks and integrated root hydraulic properties to derive a standard uptake fraction (SUF) for each genotype. Results demonstrated that excavation and in situ digitization accurately reflected the spatial structure of root systems, despite some underestimation of fine root length. Our experiment revealed significant genotypic variations in RSA over time and provided new insights into genotype-specific water acquisition capabilities. Simulated RSA closely resembled the specific features of the field-grown and digitized root systems. This study provides a foundational methodology for future research aimed at utilizing RSA models to improve the sustainability and productivity of woody perennials under changing climatic conditions.

Discrepancy in coordination and variation of root and leaf traits among herbaceous and shrub species in the desert, China

Introduction

Alterations in life forms could simultaneously influence the variability of fine root and leaf traits. However, our understanding of the organ-level coordination and patterns of variation in fine root and leaf traits among desert herbs and shrubs with distinct habits remains limited.

Methods

Consequently, this study examined the leaf and fine root traits of 9 shrubs and 9 herbs across three desert habitats through Sperman's correlation analysis, principal component analysis (PCA), and standardized major axis (SMA) analysis as a means of identifying the hub traits and the resource trade-off strategies employed by desert plants to adapt to their environment.

Results

The results showed that the extent of coordination between leaf and root traits, defined as similarity, was contingent upon the life form. While the traits in shrubs were completely decoupled, those in herbs exhibited a high degree of coordination. The traits related to water acquisition and storage are highly connected and do not depend on traits and life forms. Most leaves and fine roots were primarily loaded along the PC1 and PC2 axes of principal component analysis.

Discussion

Suggesting that herbs and shrubs each adopt the most advantageous trait syndrome in accordance with their life form to acquire and conserve resources. The leaf economic spectrum and the root economic spectrum evolved independently, showing no dependence on the variations in life form. In conclusion, in desert plants, leaf and root variations occur independently along two axes, with traits associated with water acquisition playing a neutral role in their ecological strategy.

Environmental factors drive latitudinal patterns of fine-root architectures of 96 xerophytic species in the dry valleys of Southwest China

Fine-root architecture is critical feature reflecting root explorative and exploitative strategies for soil resources and soil space occupancy. Yet, studies on the variation of fine-root architecture across different species are scare and little work has been done to integrate the potential drivers on these variations along a biogeographical gradient in arid ecosystems. We measured root branching intensity, topological index, and root branching ratios as well as morphological traits (root diameter and length) in dry valley along a 1000 km latitudinal gradient. Influence of phylogeny, environmental factors on fine-root architecture and trade-offs among root traits were evaluated. With increasing latitude, the topological index and second to third root order branching ratio decreased, whereas first-to-second branching ratio increased. Root branching intensity was associated with short and thin fine roots, but has no significant latitudinal pattern. As a whole, soil microbial biomass was the most important driver in the variation of root branching intensity, and soil texture was the strongest predictor of topological index. Additionally, mean annual temperature was an important factor influencing first-to-second branching ratio. Our results suggest variations in fine-root architectures were more dependent on environmental variables than phylogeny, signifying that fine-root architecture is sensitive to environmental variations.

Understanding plant-soil interactions underpins enhanced sustainability of crop production

The Green Revolution transformed agriculture with high-yielding, stress-resistant varieties. However, the urgent need for more sustainable agricultural development presents new challenges: increasing crop yield, improving nutritional quality, and enhancing resource-use efficiency. Soil plays a vital role in crop-production systems and ecosystem services, providing water, nutrients, and physical anchorage for crop growth. Despite advancements in plant and soil sciences, our understanding of belowground plant-soil interactions, which impact both crop performance and soil health, remains limited. Here, we argue that a lack of understanding of these plant-soil interactions hinders sustainable crop production. We propose that targeted engineering of crops and soils can provide a fresh approach to achieve higher yields, more efficient sustainable crop production, and improved soil health.

Beyond the rootzone: Unveiling soil property and biota gradients around plants

Although the effects of plants on soil properties are well known, the effects of distance from plant roots to root-free soil on soil properties and associated soil organisms are much less studied. Previous research on the effects of distance from a plant explored specific soil organisms and properties, however, comparative studies across a wide range of plant-associated organisms and multiple model systems are lacking. We conducted a controlled greenhouse experiment using soil from two contrasting habitats. Within each soil type, we cultivated two plant species, individually and in combination, studying soil organisms and properties in the root centre, the root periphery, and the root-free zones. We showed that the distance from the cultivated plant (representing decreasing amount of plant roots) had a significant impact on the abiotic properties of the soil (pH and available P and N) and also on the composition of the fungal, bacterial, and nematode communities. The specific patterns, however, did not always match our expectations. For example, there was no significant relationship between the abundance of fungal pathogens and the distance from the cultivated plant compared to a strong decrease in the abundance of arbuscular mycorrhizal fungi. Changes in soil chemistry along the distance from the cultivated plant were probably one of the important drivers that affected bacterial communities. The abundance of nematodes also decreased with distance from the cultivated plant, and the rate of their responses reflected the distribution of their food sources. The patterns of soil changes along the gradient from plant to root-free soil were largely similar in two contrasting soil types and four plant species or their mixtures. This suggests that our results can be generalised to other systems and contribute to a better understanding of the mechanisms of soil legacy formation.

Contribution of mycorrhizal symbiosis and root strategy to red clover aboveground biomass under nitrogen addition and phosphorus distribution

Soil nutrients exhibit heterogeneity in their spatial distribution, presenting challenges to plant acquisition. Notably, phosphorus (P) heterogeneity is a characteristic feature of soil, necessitating the development of adaptive strategies by plants to cope with this phenomenon. To address this, fully crossed three-factor experiments were conducted using red clover within rhizoboxes. Positions of P in three conditions, included P even distribution (even P), P close distribution (close P), and P far distribution (far P). Concurrently, N addition was two amounts(0 and 20 mg kg- 1), both with and without AMF inoculation. The findings indicated a decrease in aboveground biomass attributable to uneven P distribution, whereas N and AMF demonstrated the potential to affect aboveground biomass. In a structural equation model, AMF primarily increased aboveground biomass by enhancing nodule number and specific leaf area (SLA). In contrast, N addition improved aboveground biomass through increased nodule number or direct effects. Subsequently, a random forest model indicated that under the far P treatment, fine root length emerged as the primary factor affecting aboveground biomass, followed by thickest root length. Conversely, in the even P treatment, the thickest root length was of paramount importance. In summary, when confronted with uneven P distribution, clover plants adopted various root foraging strategies. AMF played a pivotal role in elevating nodule number, and SLA.

Genome-Wide Association study for root system architecture traits in field soybean [Glycine max (L.) Merr.]

Roots play a crucial role in plant development, serving to absorb water and nutrients from the soil while also providing structural stability. However, the impacts of global warming can impede root growth by altering soil conditions that hinder overall plant growth. To address this challenge, there is a need to screen and identify plant genotypes with superior Root System Architecture traits (RSA), that can be used for future breeding efforts in enhancing their resilience to these environmental changes. In this project, 500 mid to late-maturity soybean accessions were grown on blue blotting papers hydroponically with six replicates and assessed seven RSA traits. Genome-Wide Association Studies (GWAS) were carried out with root phenotypic data and SNP data from the SoySNP50K iSelect SNP BeadChip, using both the TASSEL 5.0 and FarmCPU techniques. A total of 26 significant SNP-trait correlations were discovered, with 11 SNPs on chromosome 13. After SNP selection, we identified 14 candidate genes within 100-kb regions flanking the SNPs, which are related to root architecture. Notably, Glyma.17G258700, which exhibited substantial differential expression in root tips and its Arabidopsis homolog, AT4G24190 (GRP94) is involved in the regulation of meristem size and organization. Other candidate genes includes Glyma.03G023000 and Glyma.13G273500 that are also play a key role in lateral root initiation and root meristem growth, respectively. These findings significantly contribute to the discovery of key genes associated with root system architecture, facilitating the breeding of resilient cultivars adaptable to changing climates.

Root and shoot phenology, architecture, and organ properties: an integrated trait network among 44 herbaceous wetland species

Integrating traits across above- and belowground organs offers comprehensive insights into plant ecology, but their various functions also increase model complexity. This study aimed to illuminate the interspecific pattern of whole-plant trait correlations through a network lens, including a detailed analysis of the root system. Using a network algorithm that allows individual traits to belong to multiple modules, we characterize interrelations among 19 traits, spanning both shoot and root phenology, architecture, morphology, and tissue properties of 44 species, mostly herbaceous monocots from Northern Ontario wetlands, grown in a common garden. The resulting trait network shows three distinct yet partially overlapping modules. Two major trait modules indicate constraints of plant size and form, and resource economics, respectively. These modules highlight the interdependence between shoot size, root architecture and porosity, and a shoot-root coordination in phenology and dry-matter content. A third module depicts leaf biomechanical adaptations specific to wetland graminoids. All three modules overlap on shoot height, suggesting multifaceted constraints of plant stature. In the network, individual-level traits showed significantly higher centrality than tissue-level traits do, demonstrating a hierarchical trait integration. The presented whole-plant, integrated network suggests that trait covariation is essentially function-driven rather than organ-specific.

Root and biomass allocation traits predict changes in plant species and communities over four decades of global change

Global change is affecting the distribution and population dynamics of plant species across the planet, leading to trends such as shifts in distribution toward the poles and to higher elevations. Yet, we poorly understand why individual species respond differently to warming and other environmental changes, or how the trait composition of communities responds. Here we ask two questions regarding plant species and community changes over 42 years of global change in a temperate montane forest in Québec, Canada: (1) How did the trait composition, alpha diversity, and beta diversity of understory vascular plant communities change between 1970 and 2010, a period over which the region experienced 1.5°C of warming and changes in nitrogen deposition? (2) Can traits predict shifts in species elevation and abundance over this time period? For 46 understory vascular species, we locally measured six aboveground traits, and for 36 of those (not including shrubs), we also measured five belowground traits. Collectively, they capture leading dimensions of phenotypic variation that are associated with climatic and resource niches. At the community level, the trait composition of high-elevation plots shifted, primarily for two root traits: specific root length decreased and rooting depth increased. The mean trait values of high-elevation plots shifted over time toward values initially associated with low-elevation plots. These changes led to trait homogenization across elevations. The community-level shifts in traits mirrored the taxonomic shifts reported elsewhere for this site. At the species level, two of the three traits predicting changes in species elevation and abundance were belowground traits (low mycorrhizal fraction and shallow rooting). These findings highlight the importance of root traits, which, along with leaf mass fraction, were associated with shifts in distribution and abundance over four decades. Community-level trait changes were largely similar across the elevational and temporal gradients. In contrast, traits typically associated with lower elevations at the community level did not predict differences among species in their shift in abundance or distribution, indicating a decoupling between species- and community-level responses. Overall, changes were consistent with some influence of both climate warming and increased nitrogen availability.

Root nitrogen reallocation: what makes it matter?

Root nitrogen (N) reallocation involves remobilization of root N-storage pools to support shoot growth. Representing a critical yet underexplored facet of plant function, we developed innovative frameworks to elucidate its connections with key ecosystem components. First, root N reallocation increases with plant species richness and N-acquisition strategies, driven by competitive stimulation of plant N demand and synergies in N uptake. Second, competitive root traits and mycorrhizal symbioses, which enhance N foraging and uptake, exhibit trade-offs with root N reallocation. Furthermore, root N reallocation is attenuated by N-supply attributes such as increasing litter quality, soil fungi-to-bacteria ratios, and microbial recruitment in the hyphosphere/rhizosphere. These frameworks provide new insights and research avenues for understanding the ecological roles of root N reallocation.

Anatomical traits explain drought response of seedlings from wet tropical forests

Water availability regulates plant community dynamics but the drought response of seedlings remains poorly known, despite their vulnerability, especially for the Asian tropics. In particular, discerning how functional traits of seedlings mediate drought response can aid generalizable predictions of tree responses to global environmental change. We assessed interspecific variation in drought response explained by above- and below-ground seedling traits. We conducted a dry-down experiment in the greenhouse using 16 tree species from the humid forests of Western Ghats in southern India, chosen to represent differences in affinity to conditions of high and low seasonal drought (seasonality affiliation). We compared survival, growth, and photosynthetic performance under drought and well-watered conditions and assessed the extent to which species' responses were explained by seasonality affiliation and 12 traits of root, stem and leaf. We found that the species from seasonally dry forest reduced photosynthetic rate in drought compared with well-watered conditions, but seasonality affiliation did not explain differences in growth and survival. Performance in drought vs well-watered conditions were best explained by anatomical traits of xylem, veins and stomata. Species with larger xylem reduced their growth and photosynthesis to tolerate desiccation. In drought, species with smaller stomata correlated with lower survival even though photosynthetic activity decreased by a larger extent with larger stomata. Overall, anatomical traits of xylem and stomata, directly related to water transport and gas-exchange, played a more prominent role than commonly used traits (e.g., specific leaf area, leaf dry matter content) in explaining species response to drought, and may offer a good proxy for physiological traits related to drought tolerance of seedlings.

Deciphering salt stress responses in Solanum pimpinellifolium through high-throughput phenotyping

Soil salinity is a major environmental stressor affecting agricultural productivity worldwide. Understanding plant responses to salt stress is crucial for developing resilient crop varieties. Wild relatives of cultivated crops, such as wild tomato, Solanum pimpinellifolium, can serve as a useful resource to further expand the resilience potential of the cultivated germplasm, S. lycopersicum. In this study, we employed high-throughput phenotyping in the greenhouse and field conditions to explore salt stress responses of a S. pimpinellifolium diversity panel. Our study revealed extensive phenotypic variations in response to salt stress, with traits such as transpiration rate, shoot mass, and ion accumulation showing significant correlations with plant performance. We found that while transpiration was a key determinant of plant performance in the greenhouse, shoot mass strongly correlated with yield under field conditions. Conversely, ion accumulation was the least influential factor under greenhouse conditions. Through a Genome Wide Association Study, we identified candidate genes not previously associated with salt stress, highlighting the power of high-throughput phenotyping in uncovering novel aspects of plant stress responses. This study contributes to our understanding of salt stress tolerance in S. pimpinellifolium and lays the groundwork for further investigations into the genetic basis of these traits, ultimately informing breeding efforts for salinity tolerance in tomato and other crops.

The impact of soil hydrological regimes and vegetation systems on plant performance and root depth distribution in bioswale microcosms

Plant rooting patterns in bioswales, raingardens and other vegetated infiltration systems are essential, as they contribute biopores which maintain the infiltration function over time. However, fluctuating hydrological conditions, ranging from flooded to drained, can have a heavy impact on plant rooting, as well as consequences for plant contributions to other ecosystem services and ecological functions. This study tested the biomass allocation to roots and the vertical root profile of four plant species, alone or in competition with a grass, and their responses to the experimental manipulation of soil hydrology in soil column microcosms. The hydrological regimes were combinations of flooded and drained conditions, respectively, including Wet cycles (72 and 96 h), Dry cycles (24 and 144 h), Wet-dry cycles (72 and 264 h), and Control group (watered twice per week). When the species were exposed to repeated wet-dry cycling hydrological regimes, we found a clear shift in vertical root distribution and shallower rooting in wetter regimes. It was also found that alongside this shallower rooting, there were no changes to total biomass and only moderate adjustments to biomass investment in roots. Overall, differences in rooting patterns between hydrological regimes and species were moderate when the dicot species were grown alone. The addition of the grass Festuca rubra contributed to a strong increase in total root mass density that evened out the differences in rooting patterns but also gave a deeper rooting. Accordingly, mixed species systems may be a robust approach to vegetated infiltration systems.

Trait-Mediated Variation in Seedling Performance in Costa Rican Successional Forests: Comparing Above-Ground, Below-Ground, and Allocation-Based Traits

The interspecific relationship between functional traits and tree seedling performance can be inconsistent, potentially due to site-to-site or microsite variation in environmental conditions. Studies of seedling traits and performance often focus on above-ground traits, despite the importance of below-ground resource acquisition and biomass allocation to above versus below-ground functions. Here we investigate how varying environmental conditions across sites induce intraspecific variation in organ-level (above-ground, below-ground) and biomass allocation traits, affecting interspecific relationships between these traits and seedling performance. We analyzed trait expression for 12 organ-level and three allocation traits and their relationships with height growth (1716 seedlings) and mortality (15,862 seedlings) for 26 tree species across three sites along a forest successional gradient in Costa Rica. We found significant intraspecific differences across sites in all allocation traits, but only in three of seven above-ground and three of five below-ground organ-level traits. Allocation traits were better predictors of seedling performance than organ-level traits. Relationships between allocation traits and both growth and mortality varied among all sites, but for organ-level traits, only relationships with growth varied among sites. These results underscore that biomass allocation plays a key role in the earliest life stages of trees and that site-specific conditions can influence how functional traits mediate seedling establishment during succession.

An advanced three-dimensional phenotypic measurement approach for extracting Ginkgo root structural parameters based on terrestrial laser scanning

The phenotyping of plant roots is essential for improving plant productivity and adaptation. However, traditional techniques for assembling root phenotyping information are limited and often labor-intensive, especially for woody plants. In this study, an advanced approach called accurate and detailed quantitative structure model-based (AdQSM-based) root phenotypic measurement (ARPM) was developed to automatically extract phenotypes from Ginkgo tree root systems. The approach involves three-dimensional (3D) reconstruction of the point cloud obtained from terrestrial laser scanning (TLS) to extract key phenotypic parameters, including root diameter (RD), length, surface area, and volume. To evaluate the proposed method, two approaches [minimum spanning tree (MST)-based and triangulated irregular network (TIN)-based] were used to reconstruct the Ginkgo root systems from point clouds, and the number of lateral roots along with RD were extracted and compared with traditional methods. The results indicated that the RD extracted directly from point clouds [coefficient of determination (R 2) = 0.99, root-mean-square error (RMSE) = 0.41 cm] outperformed the results of 3D models (MST-based: R 2 = 0.71, RMSE = 2.20 cm; TIN-based: R 2 = 0.54, RMSE = 2.80 cm). Additionally, the MST-based model (F1 = 0.81) outperformed the TIN-based model (F1 = 0.80) in detecting the number of first-order and second-order lateral roots. Each phenotyping trait fluctuated with a different cloud parameter (CP), and the CP value of 0.002 (r = 0.94, p < 0.01) was found to be advantageous for better extraction of structural phenotypes. This study has helped with the extraction and quantitative analysis of root phenotypes and enhanced our understanding of the relationship between architectural parameters and corresponding physiological functions of tree roots.

CoRRE Trait Data: A dataset of 17 categorical and continuous traits for 4079 grassland species worldwide

In our changing world, understanding plant community responses to global change drivers is critical for predicting future ecosystem composition and function. Plant functional traits promise to be a key predictive tool for many ecosystems, including grasslands; however, their use requires both complete plant community and functional trait data. Yet, representation of these data in global databases is sparse, particularly beyond a handful of most used traits and common species. Here we present the CoRRE Trait Data, spanning 17 traits (9 categorical, 8 continuous) anticipated to predict species' responses to global change for 4,079 vascular plant species across 173 plant families present in 390 grassland experiments from around the world. The dataset contains complete categorical trait records for all 4,079 plant species obtained from a comprehensive literature search, as well as nearly complete coverage (99.97%) of imputed continuous trait values for a subset of 2,927 plant species. These data will shed light on mechanisms underlying population, community, and ecosystem responses to global change in grasslands worldwide.

Drought intensity and duration effects on morphological root traits vary across trait type and plant functional groups: a meta-analysis

The increasing severity and frequency of drought pose serious threats to plant species worldwide. Yet, we lack a general understanding of how various intensities of droughts affect plant traits, in particular root traits. Here, using a meta-analysis of drought experiments (997 effect sizes from 76 papers), we investigate the effects of various intensities of droughts on some of the key morphological root traits. Our results show that root length, root mean diameter, and root area decline when drought is of severe or extreme intensity, whereas severe drought increases root tissue density. These patterns are most pronounced in trees compared to other plant functional groups. Moreover, the long duration of severe drought decreases root length in grasses and root mean diameter in legumes. The decline in root length and root diameter due to severe drought in trees was independent of drought duration. Our results suggest that morphological root traits respond strongly to increasing intensity of drought, which further depends on drought duration and may vary among plant functional groups. Our meta-analysis highlights the need for future studies to consider the interactive effects of drought intensity and drought duration for a better understanding of variable plant responses to drought.

Root phosphatase activity is coordinated with the root conservation gradient across a phosphorus gradient in a lowland tropical forest

Soil phosphorus (P) is a growth-limiting nutrient in tropical ecosystems, driving diverse P-acquisition strategies among plants. Particularly, mining for inorganic P through phosphomonoesterase (PME) activity is essential, given the substantial proportion of organic P in soils. Yet, the relationship between PME activity and other nutrient-acquisition root traits remains unclear. We measured root PME activity and commonly measured root traits, including root diameter, specific root length (SRL), root tissue density (RTD), and nitrogen concentration ([N]) in 18 co-occurring species across soils with varying P availability to better understand trees response to P supply. Root [N] and RTD were inversely related, and that axis was not clearly related to soil P supply. Both traits, however, correlated positively and negatively with PME activity, which responded strongly to P supply. Conversely, root diameter was inversely related to SRL, but this axis was not related to P supply. This pattern suggests that limiting similarity influenced variation along the diameter-SRL axis, explaining local trait diversity. Meanwhile, variation along the root [N]-RTD axis might best reflect environmental filtering. Overall, P availability indicator traits such as PME activity and root hairs only tended to be associated with these axes, highlighting limitations of these axes in describing convergent adaptations at local sites.

Trees adjust nutrient acquisition strategies across tropical forest secondary succession

Nutrient limitation may constrain the ability of recovering and mature tropical forests to serve as a carbon sink. However, it is unclear to what extent trees can utilize nutrient acquisition strategies - especially root phosphatase enzymes and mycorrhizal symbioses - to overcome low nutrient availability across secondary succession. Using a large-scale, full factorial nitrogen and phosphorus fertilization experiment of 76 plots along a secondary successional gradient in lowland wet tropical forests of Panama, we tested the extent to which root phosphatase enzyme activity and mycorrhizal colonization are flexible, and if investment shifts over succession, reflective of changing nutrient limitation. We also conducted a meta-analysis to test how tropical trees adjust these strategies in response to nutrient additions and across succession. We find that tropical trees are dynamic, adjusting investment in strategies - particularly root phosphatase - in response to changing nutrient conditions through succession. These changes reflect a shift from strong nitrogen to weak phosphorus limitation over succession. Our meta-analysis findings were consistent with our field study; we found more predictable responses of root phosphatase than mycorrhizal colonization to nutrient availability. Our findings suggest that nutrient acquisition strategies respond to nutrient availability and demand in tropical forests, likely critical for alleviating nutrient limitation.

Wheat dwarfing reshapes plant and fungal development in arbuscular mycorrhizal symbiosis

The introduction of Reduced height (Rht) dwarfing genes into elite wheat varieties has contributed to enhanced yield gain in high input agrosystems by preventing lodging. Yet, how modern selection for dwarfing has affected symbiosis remains poorly documented. In this study, we evaluated the response of both the plant and the arbuscular mycorrhizal fungus to plant genetic variation at a major Quantitative Trait Locus called QTL 4B2, known to harbor a Rht dwarfing gene, when forming the symbiosis. We used twelve inbred genotypes derived from a diversity base broadened durum wheat Evolutionary Pre-breeding Population and genotyped with a high-throughput Single Nucleotide Polymorphism (SNP) genotyping array. In a microcosm setup segregating roots and the extra-radical mycelium, each wheat genotype was grown with or without the presence of Rhizophagus irregularis. To characterize arbuscular mycorrhizal symbiosis, we assessed hyphal density, root colonization, spore production, and plant biomass. Additionally, we split the variation of these variables due either to genotypes or to the Rht dwarfing genes alone. The fungus exhibited greater development in the roots of Dwarf plants compared to non-Dwarf plants, showing increases of 27%, 37% and 51% in root colonization, arbuscules, and vesicles, respectively. In addition, the biomass of the extra-radical fungal structures increased by around 31% in Dwarf plants. The biomass of plant roots decreased by about 43% in mycorrhizal Dwarf plants. Interestingly, extraradical hyphal production was found to be partly genetically determined with no significant effect of Rht, as for plant biomasses. In contrast, variations in root colonization, arbuscules and extraradical spore production were explained by Rht dwarfing genes. Finally, when mycorrhizal, Dwarf plants had significantly lower total P content, pointing towards a less beneficial symbiosis for the plant and increased profit for the fungus. These results highlight the effect of Rht dwarfing genes on both root and fungal development. This calls for further research into the molecular mechanisms governing these effects, as well as changes in plant physiology, and their implications for fostering arbuscular mycorrhizal symbiosis in sustainable agrosystems.

Tropical root responses to global changes: A synthesis

Tropical ecosystems face escalating global change. These shifts can disrupt tropical forests' carbon (C) balance and impact root dynamics. Since roots perform essential functions such as resource acquisition and tissue protection, root responses can inform about the strategies and vulnerabilities of ecosystems facing present and future global changes. However, root trait dynamics are poorly understood, especially in tropical ecosystems. We analyzed existing research on tropical root responses to key global change drivers: warming, drought, flooding, cyclones, nitrogen (N) deposition, elevated (e) CO2, and fires. Based on tree species- and community-level literature, we obtained 266 root trait observations from 93 studies across 24 tropical countries. We found differences in the proportion of root responsiveness to global change among different global change drivers but not among root categories. In particular, we observed that tropical root systems responded to warming and eCO2 by increasing root biomass in species-scale studies. Drought increased the root: shoot ratio with no change in root biomass, indicating a decline in aboveground biomass. Despite N deposition being the most studied global change driver, it had some of the most variable effects on root characteristics, with few predictable responses. Episodic disturbances such as cyclones, fires, and flooding consistently resulted in a change in root trait expressions, with cyclones and fires increasing root production, potentially due to shifts in plant community and nutrient inputs, while flooding changed plant regulatory metabolisms due to low oxygen conditions. The data available to date clearly show that tropical forest root characteristics and dynamics are responding to global change, although in ways that are not always predictable. This synthesis indicates the need for replicated studies across root characteristics at species and community scales under different global change factors.

Patterns and driving factors of functional traits of desert species with different elevational distributions in the Tibetan Plateau and adjacent areas

Variations in functional traits serve as measures of plants' ability to adapt to environment. Exploring the patterns of functional traits of desert plants along elevational gradients is helpful to understand the responses and adaptation strategies of species to changing environments. However, it is unknown whether the relationship between functional traits and elevation is affected by differences in the species' elevational distributions (elevation preference and species' range). Importantly, most researches have concerned with differences in mean trait values and ignored intraspecific trait variation. Here, we measured functional traits of desert plants along a wide elevational gradient in the Tibetan Plateau and adjacent areas and explored functional trait patterns over elevation in species with different elevational distributions. We decomposed trait variation and further investigated characterizations of intraspecific variation. Ultimately, the main drivers of trait variation were identified using redundancy analysis. We found that species' elevational distributions significantly influenced the relationship of functional traits such as plant height, leaf dry matter content, leaf thickness, leaf nitrogen and carbon content with elevation. Species with a lower elevational preference showed greater trait variation than species with a higher elevational preference, suggesting that species that prefer high elevation are more conservative facing environmental changes. We provide evidence that interspecific trait variation in leaf thickness and leaf carbon content decreased with increasing species' range, indicating that increased variations in resistance traits within species make greater responsiveness to environmental changes, enabling species a wider range. Elevation, temperature and precipitation were the main drivers of trait variation in species with a low elevational preference, while the effect of precipitation on trait variation in species with a high elevational preference was not significant. This study sheds new insights on how plants with different elevational distributions regulate their ecological strategies to cope with changing environments.

Intraspecific variation in fine root morphology of European beech: a root order-based analysis of phenotypic root morphospace

Fine roots are multifunctional organs that may change function with ageing or root branching events from primarily absorptive to resource transport and storage functions. It is not well understood, how fine root branching patterns and related root functional differentiation along the longitudinal root axis change with soil chemical and physical conditions. We examined the variation in fine root branching patterns (the relative frequency of 1st to 4th root orders) and root morphological and chemical traits of European beech trees with soil depth (topsoil vs. subsoil) and soil chemistry (five sites with acid to neutral/alkaline bedrock). Bedrock type and related soil chemistry had an only minor influence on branching patterns: base-poor, infertile sites showed no higher fine root branching than base-rich sites. The contribution of 1st-order root segments to total fine root length decreased at all sites from about 60% in the topsoil (including organic layer) to 45% in the lower subsoil. This change was associated with a decrease in specific root area and root N content and an increase in mean root diameter with soil depth, while root tissue density did not change consistently. We conclude that soil depth (which acts through soil physical and chemical drivers) influences the fine root branching patterns of beech much more than soil chemical variation across soil types. To examine whether changes in root function are indeed triggered by branching events or result from root ageing and diameter growth, spatially explicit root physiological and anatomical studies across root orders are needed.

Intraspecific alternative phenotypes contribute to variation in species' strategies for growth

Ecologists have historically sought to identify the mechanisms underlying the maintenance of local species diversity. High-dimensional trait-based relationships, such as alternative phenotypes, have been hypothesized as important for maintaining species diversity such that phenotypically dissimilar individuals compete less for resources but have similar performance in a given environment. The presence of alternative phenotypes has primarily been investigated at the community level, despite the importance of intraspecific variation to diversity maintenance. The aims of this research are to (1) determine the presence or absence of intraspecific alternative phenotypes in three species of tropical tree seedlings, (2) investigate if these different species use the same alternative phenotypes for growth success, and (3) evaluate how findings align with species co-occurrence patterns. We model species-specific relative growth rate with individual-level measurements of leaf mass per area (LMA) and root mass fraction (RMF), environmental data, and their interactions. We find that two of the three species have intraspecific alternative phenotypes, with individuals within species having different functional forms leading to similar growth. Interestingly, individuals within these species use the same trait combinations, high LMA × low RMF and low LMA × high RMF, in high soil nutrient environments to acquire resources for higher growth. This similarity among species in intraspecific alternative phenotypes and variables that contribute most to growth may lead to their negative spatial co-occurrence. Overall, we find that multiple traits or interactions between traits and the environment drive species-specific strategies for growth, but that individuals within species leverage this multi-dimensionality in different ways for growth success.

Toward a coordinated understanding of hydro-biogeochemical root functions in tropical forests for application in vegetation models

Tropical forest root characteristics and resource acquisition strategies are underrepresented in vegetation and global models, hampering the prediction of forest-climate feedbacks for these carbon-rich ecosystems. Lowland tropical forests often have globally unique combinations of high taxonomic and functional biodiversity, rainfall seasonality, and strongly weathered infertile soils, giving rise to distinct patterns in root traits and functions compared with higher latitude ecosystems. We provide a roadmap for integrating recent advances in our understanding of tropical forest belowground function into vegetation models, focusing on water and nutrient acquisition. We offer comparisons of recent advances in empirical and model understanding of root characteristics that represent important functional processes in tropical forests. We focus on: (1) fine-root strategies for soil resource exploration, (2) coupling and trade-offs in fine-root water vs nutrient acquisition, and (3) aboveground-belowground linkages in plant resource acquisition and use. We suggest avenues for representing these extremely diverse plant communities in computationally manageable and ecologically meaningful groups in models for linked aboveground-belowground hydro-nutrient functions. Tropical forests are undergoing warming, shifting rainfall regimes, and exacerbation of soil nutrient scarcity caused by elevated atmospheric CO2. The accurate model representation of tropical forest functions is crucial for understanding the interactions of this biome with the climate.