Emissions of methyl halides and methane from rice paddies

Symbiotic compatibility between rice cultivars and arbuscular mycorrhizal fungi genotypes affects rice growth and mycorrhiza-induced resistance

Introduction

Arbuscular mycorrhizal fungi (AMF) belong to the Glomeromycota clade and can form root symbioses with 80% of Angiosperms, including crops species such as wheat, maize and rice. By increasing nutrient availability, uptake and soil anchoring of plants, AMF can improve plant's growth and tolerance to abiotic stresses. AMF can also reduce symptoms and pathogen load on infected plants, both locally and systemically, through a phenomenon called mycorrhiza induced resistance (MIR). There is scarce information on rice mycorrhization, despite the high potential of this symbiosis in a context of sustainable water management in rice production systems.

Methods

We studied the symbiotic compatibility (global mycorrhization & arbuscules intensity) and MIR phenotypes between six rice cultivars from two subspecies (indica: IR64 & Phka Rumduol; japonica: Nipponbare, Kitaake, Azucena & Zhonghua 11) and three AMF genotypes (Funneliformis mosseae FR140 (FM), Rhizophagus irregularis DAOM197198 (RIR) & R. intraradices FR121 (RIN)). The impact of mycorrhization on rice growth and defence response to Xanthomonas oryzae pv oryzae (Xoo) infection was recorded via both phenotypic indexes and rice marker gene expression studies.

Results

All three AMF genotypes colonise the roots of all rice varieties, with clear differences in efficiency depending on the combination under study (from 27% to 84% for Phka Rumduol-RIN and Nipponbare-RIR combinations, respectively). Mycorrhization significantly (α=0.05) induced negative to beneficial effects on rice growth (impact on dry weight ranging from -21% to 227% on Azucena-FM and Kitaake-RIN combinations, respectively), and neutral to beneficial effects on the extent of Xoo symptoms on leaves (except for Azucena-RIN combination which showed a 68% increase of chlorosis). R. irregularis DAOM197198 was the most compatible AMF partner of rice, with high root colonisation intensity (84% of Nipponbare's roots hyphal colonisation), beneficial effects on rice growth (dry weight +28% (IR64) to +178% (Kitaake)) and decrease of Xoo-induced symptoms (-6% (Nipponbare) to -27% (IR64)). Transcriptomic analyses by RT-qPCR on leaves of two rice cultivars contrasting in their association with AMF show two different patterns of response on several physiological marker genes.

Discussion

Overall, the symbiotic compatibility between rice cultivars and AMF demonstrates adequate colonization, effectively restricting the nutrient starvation response and mitigating symptoms of phytopathogenic infection.

A review of iodine in plants with biofortification: Uptake, accumulation, transportation, function, and toxicity

Iodine deficiency can cause thyroid disease, a serious health problem that has been affecting humans since several years. The biofortification of plants with iodine is an effective strategy for regulating iodine content in humans. In addition, radioiodine released into the atmosphere may contaminate terrestrial ecosystem along with dry or wet deposition and its accumulation in plants may cause exposure risks to humans via food chain. Recent progress in understanding the mechanisms related to iodine uptake, elementary speciation, dynamic transportation, nutritional role, and toxicity in plants is reviewed here. First, we introduced the iodine cycle in a marine-atmosphere-land system. The content and speciation of iodine in plants under natural conditions and biofortification backgrounds were also analyzed. We then discussed the mechanisms of iodine uptake and efflux by plants. The promotion or inhibition effects of iodine on plant growth were also investigated. Finally, the participation of radioiodine in plant growth and its safety risks along the food chain were evaluated. Furthermore, future challenges and opportunities for understanding the participation of iodine in plants have been outlined.

Role of different organic and inorganic amendments in the biofortification of iodine in Coriandrum sativum crop

Iodine deficiency disorder (IDDs) is one of the most prevailing and common health issues in mountainous communities. An effective way to control the prevalence and emergence of IDDs in remote areas is to use iodized salt. However, recent studies indicated that iodized salt is mostly lost during the cooking process. The current study of iodine biofortification differed from the previous studies in two main aspects: it involved exogenous organic iodine (OI), and inorganic iodine such as potassium iodide (KI), added in the amended soils, which previous studies did not consider. Moreover, the translocation, transformation, and distribution of iodine from soil to plants are poorly understood in amended soil. Thus, identifying an effective management option to enhance iodine (I) bioavailability in nutrient-deficient soils is currently a significant challenge. Therefore, a greenhouse study was conducted to investigate the effects of organic and inorganic soil amendments on the uptake of different iodine sources in coriander crops. Results showed that applying an inorganic iodine source significantly enhanced the iodine edible part of the crop compared to the control (p < 0.05). The application of soil amendments relatively improved iodine uptake by the coriander crop compared to the control. The highest iodine was found in crop tissues grown in wood ash-amended soil supplemented with KI (291.97 μg kg−1). The KI uptake was significantly higher than the OI (p < 0.05). Compared to OI, a higher translocation factor (0.96) and distribution coefficient (3.51) were found for plants treated with KI. Thus, this study indicates that a suitable soil amendment can be a better option for iodine biofortification and that it can serve as an alternative to iodized salt in preventing IDDs.

Artificial Soils Reveal Individual Factor Controls on Microbial Processes

Soil matrix properties influence microbial behaviors that underlie nutrient cycling, greenhouse gas production, and soil formation. However, the dynamic and heterogeneous nature of soils makes it challenging to untangle the effects of different matrix properties on microbial behaviors. To address this challenge, we developed a tunable artificial soil recipe and used these materials to study the abiotic mechanisms driving soil microbial growth and communication. When we used standardized matrices with varying textures to culture gas-reporting biosensors, we found that a Gram-negative bacterium (Escherichia coli) grew best in synthetic silt soils, remaining active over a wide range of soil matric potentials, while a Gram-positive bacterium (Bacillus subtilis) preferred sandy soils, sporulating at low water potentials. Soil texture, mineralogy, and alkalinity all attenuated the bioavailability of an acyl-homoserine lactone (AHL) signaling molecule that controls community-level microbial behaviors. Texture controlled the timing of AHL sensing, while AHL bioavailability was decreased ~10⁵-fold by mineralogy and ~10³-fold by alkalinity. Finally, we built artificial soils with a range of complexities that converge on the properties of one Mollisol. As artificial soil complexity increased to more closely resemble the Mollisol, microbial behaviors approached those occurring in the natural soil, with the notable exception of organic matter. IMPORTANCE Understanding environmental controls on soil microbes is difficult because many abiotic parameters vary simultaneously and uncontrollably when different natural soils are compared, preventing mechanistic determination of any individual soil parameter's effect on microbial behaviors. We describe how soil texture, mineralogy, pH, and organic matter content can be varied individually within artificial soils to study their effects on soil microbes. Using microbial biosensors that report by producing a rare indicator gas, we identify soil properties that control microbial growth and attenuate the bioavailability of a diffusible chemical used to control community-level behaviors. We find that artificial soils differentially affect signal bioavailability and the growth of Gram-negative (Escherichia coli) and Gram-positive (Bacillus subtilis) microbes. These artificial soils are useful for studying the mechanisms that underlie soil controls on microbial fitness, signaling, and gene transfer.

Insights Into the Genetics of the Zhonghua 11 Resistance to Meloidogyne graminicola and Its Molecular Determinism in Rice

Meloidogyne graminicola is a widely spread nematode pest of rice that reduces crop yield up to 20% on average in Asia, with devastating consequences for local and global rice production. Due to the ban on many chemical nematicides and the recent changes in water management practices in rice agriculture, an even greater impact of M. graminicola can be expected in the future, stressing the demand for the development of new sustainable nematode management solutions. Recently, a source of resistance to M. graminicola was identified in the Oryza sativa japonica rice variety Zhonghua 11 (Zh11). In the present study, we examine the genetics of the Zh11 resistance to M. graminicola and provide new insights into its cellular and molecular mechanisms. The segregation of the resistance in F₂ hybrid populations indicated that two dominant genes may be contributing to the resistance. The incompatible interaction of M. graminicola in Zh11 was distinguished by a lack of swelling of the root tips normally observed in compatible interactions. At the cellular level, the incompatible interaction was characterised by a rapid accumulation of reactive oxygen species in the vicinity of the nematodes, accompanied by extensive necrosis of neighbouring cells. The expression profiles of several genes involved in plant immunity were analysed at the early stages of infection during compatible (susceptible plant) and incompatible (resistant plant) interactions. Notably, the expression of OsAtg4 and OsAtg7, significantly increased in roots of resistant plants in parallel with the cell death response, suggesting that autophagy is activated and may contribute to the resistance-mediated hypersensitive response. Similarly, transcriptional regulation of genes involved in hormonal pathways in Zh11 indicated that salicylate signalling may be important in the resistance response towards M. graminicola. Finally, the nature of the resistance to M. graminicola and the potential exploitation of the Zh11 resistance for breeding are discussed.

Production of Methyl-Iodide in the Environment

Iodine is an essential micronutrient for most of the living beings, including humans. Besides its indispensable role in animals, it also plays an important role in the environment. It undergoes several chemical and biological transformations resulting in the production of volatile methylated iodides, which play a key role in the iodine's global geochemical cycle. Since it can also mitigate the process of climate change, it is reasonable to study its biogeochemistry. Therefore, the aim of this review is to provide information on its origin, global fluxes and mechanisms of production in the environment.

Targeted knockout of the gene OsHOL1 removes methyl iodide emissions from rice plants

Iodine deficiency represents a public health problem worldwide. To increase the amount of iodine in the diet, biofortification strategies of plants have been tried. They rely on the exogenous administration of iodine to increase its absorption and accumulation. However, iodine is not stable in plants and can be volatilized as methyl iodide through the action of specific methyltransferases encoded by the HARMLESS TO OZONE LAYER (HOL) genes. The release of methyl iodide in the atmosphere represents a threat for the environment due to its ozone depletion potential. Rice paddies are among the strongest producers of methyl iodide. Thus, the agronomic approach of iodine biofortification is not appropriate for this crop, leading to further increases of iodine emissions. In this work, we used the genome editing CRISPR/Cas9 technology to knockout the rice HOL genes and investigate their function. OsHOL1 resulted a major player in methyl iodide production, since its knockout abolished the process. Moreover, its overexpression reinforced it. Conversely, knockout of OsHOL2 did not produce effects. Our experiments helped elucidating the function of the rice HOL genes, providing tools to develop new rice varieties with reduced iodine emissions and thus more suitable for biofortification programs without further impacting on the environment.

13 C-chloromethane incubations provide evidence for novel bacterial chloromethane degraders in a living tree fern

Chloromethane (CH₃ Cl) is the most abundant halogenated volatile organic compound in the atmosphere and contributes to stratospheric ozone depletion. CH₃ Cl has mainly natural sources such as emissions from vegetation. In particular, ferns have been recognized as strong emitters. Mitigation of CH₃ Cl to the atmosphere by methylotrophic bacteria, a global sink for this compound, is likely underestimated and remains poorly characterized. We identified and characterized CH₃ Cl-degrading bacteria associated with intact and living tree fern plants of the species Cyathea australis by stable isotope probing (SIP) with ¹³ C-labelled CH₃ Cl combined with metagenomics. Metagenome-assembled genomes (MAGs) related to Methylobacterium and Friedmanniella were identified as being involved in the degradation of CH₃ Cl in the phyllosphere, i.e., the aerial parts of the tree fern, while a MAG related to Sorangium was linked to CH₃ Cl degradation in the fern rhizosphere. The only known metabolic pathway for CH₃ Cl degradation, via a methyltransferase system including the gene cmuA, was not detected in metagenomes or MAGs identified by SIP. Hence, a yet uncharacterized methylotrophic cmuA-independent pathway may drive CH₃ Cl degradation in the investigated tree ferns.

Growth rate-dependent synthesis of halomethanes in marine heterotrophic bacteria and its implications for the ozone layer recovery

Halomethanes (e.g., CH₃ Cl, CH₃ Br, CH₃ I and CHBr₃ ) are ozone-depleting compounds that, in contrast to the human-made chlorofluorocarbons, marine organisms synthesize naturally. Therefore, their production cannot be totally controlled by human action. However, identifying all their natural sources and understanding their synthesis regulation can help to predict their production rates and their impact on the future recovery of the Earth's ozone layer. Here we show that the synthesis of mono-halogenated halocarbons CH₃ Cl, CH₃ Br, and CH₃ I is a generalized process in representatives of the major marine heterotrophic bacteria groups. Furthermore, halomethane production was growth rate dependent in all the strains we studied, implying uniform synthesis regulation patterns among bacterioplankton. Using these experimental observations and in situ halomethane concentrations, we further evaluated the potential production rates associated with higher bacterial growth rates in response to global warming in a coastal environment within the Southern California Bight. Our estimates show that a 3°C temperature rise would translate into a 35%-84% increase in halomethane production rate by 2100. Overall, these data suggest that marine heterotrophic bacteria are significant producers of these climate-relevant gases and that their contribution to the atmospheric halogen budget could increase in the future, impacting the ozone layer recovery.

Chlorine cycling and the fate of Cl in terrestrial environments

Chlorine (Cl) in the terrestrial environment is of interest from multiple perspectives, including the use of chloride as a tracer for water flow and contaminant transport, organochlorine pollutants, Cl cycling, radioactive waste (radioecology; 36Cl is of large concern) and plant science (Cl as essential element for living plants). During the past decades, there has been a rapid development towards improved understanding of the terrestrial Cl cycle. There is a ubiquitous and extensive natural chlorination of organic matter in terrestrial ecosystems where naturally formed chlorinated organic compounds (Clorg) in soil frequently exceed the abundance of chloride. Chloride dominates import and export from terrestrial ecosystems while soil Clorg and biomass Cl can dominate the standing stock Cl. This has important implications for Cl transport, as chloride will enter the Cl pools resulting in prolonged residence times. Clearly, these pools must be considered separately in future monitoring programs addressing Cl cycling. Moreover, there are indications that (1) large amounts of Cl can accumulate in biomass, in some cases representing the main Cl pool; (2) emissions of volatile organic chlorines could be a significant export pathway of Cl and (3) that there is a production of Clorg in tissues of, e.g. plants and animals and that Cl can accumulate as, e.g. chlorinated fatty acids in organisms. Yet, data focusing on ecosystem perspectives and combined spatiotemporal variability regarding various Cl pools are still scarce, and the processes and ecological roles of the extensive biological Cl cycling are still poorly understood.

A Split Methyl Halide Transferase AND Gate That Reports by Synthesizing an Indicator Gas

Monitoring microbial reactions in highly opaque or autofluorescent environments like soils, seawater, and wastewater remains challenging. To develop a simple approach for observing post-translational reactions within microbes situated in environmental matrices, we designed a methyl halide transferase (MHT) fragment complementation assay that reports by synthesizing an indicator gas. We show that backbone fission within regions of high sequence variability in the Rossmann domain yields split MHT (sMHT) AND gates whose fragments cooperatively associate to synthesize CH₃Br. Additionally, we identify a sMHT whose fragments require fusion to pairs of interacting partner proteins for maximal activity. We also show that sMHT fragments fused to FKBP12 and the FKBP-rapamycin binding domain of mTOR display significantly enhanced CH₃Br production in the presence of rapamycin. This gas production is reversed in the presence of the competitive inhibitor of FKBP12/FKPB dimerization, indicating that sMHT is a reversible reporter of post-translational reactions. This sMHT represents the first genetic AND gate that reports on protein-protein interactions via an indicator gas. Because indicator gases can be measured in the headspaces of complex environmental samples, this assay should be useful for monitoring the dynamics of diverse molecular interactions within microbes situated in hard-to-image marine and terrestrial matrices.

Methyl Chloride and Methyl Bromide Production and Consumption in Coastal Antarctic Tundra Soils Subject to Sea Animal Activities

Methyl chloride (CH₃Cl) and methyl bromide (CH₃Br) are the predominant carriers of natural chlorine and bromine from the troposphere to the stratosphere, which can catalyze the destruction of stratospheric ozone. Here, penguin colony soils (PCS) and the adjacent tundra soils (i.e., penguin-lacking colony soils, PLS), seal colony soils (SCS), tundra marsh soils (TMS), and normal upland tundra soils (UTS) in coastal Antarctica were collected and incubated for the first time to confirm that these soils were CH₃Cl and CH₃Br sources or sinks. Overall, tundra soil acted as a net sink for CH₃Cl and CH₃Br with potential flux ranges from -18.1 to -2.8 pmol g^-1 d^-1 and -1.32 to -0.24 pmol g^-1 d^-1, respectively. The deposition of penguin guano or seal excrement into tundra soils facilitated the simultaneous production of CH₃Cl and CH₃Br and resulted in a smaller sink in PCS, SCS, and PLS. Laboratory-based thermal treatments and anaerobic incubation experiments suggested that the consumption of CH₃Cl and CH₃Br was predominantly mediated by microbes while the production was abiotic and O₂ independent. Temperature gradient incubations revealed that increasing soil temperature promoted the consumption of CH₃Cl and CH₃Br in UTS, suggesting that the regional sink may increase with Antarctic warming, depending on changes in soil moisture and abiotic production rates.

Human RAD51 paralogue RAD51C fosters repair of alkylated DNA by interacting with the ALKBH3 demethylase

The integrity of our DNA is challenged daily by a variety of chemicals that cause DNA base alkylation. DNA alkylation repair is an essential cellular defence mechanism to prevent the cytotoxicity or mutagenesis from DNA alkylating chemicals. Human oxidative demethylase ALKBH3 is a central component of alkylation repair, especially from single-stranded DNA. However, the molecular mechanism of ALKBH3-mediated damage recognition and repair is less understood. We report that ALKBH3 has a direct protein-protein interaction with human RAD51 paralogue RAD51C. We also provide evidence that RAD51C–ALKBH3 interaction stimulates ALKBH3-mediated repair of methyl-adduct located within 3′-tailed DNA, which serves as a substrate for the RAD51 recombinase. We further show that the lack of RAD51C–ALKBH3 interaction affects ALKBH3 function in vitro and in vivo. Our data provide a molecular mechanism underlying upstream events of alkyl adduct recognition and repair by ALKBH3.

Insight Into the Formation Paths of Methyl Bromide From Syringic Acid in Aqueous Bromide Solutions Under Simulated Sunlight Irradiation

Methyl bromide (CH₃Br) is one of the largest natural sources of bromine in the stratosphere, where it leads to ozone depletion. This paper reported the photochemical production of CH₃Br from syringic acid (SA) that has been used as an environmentally relevant model compound for terrestrially-derived dissolved organic matter. The formation of CH₃Br increased with the increase of bromide ion concentration ranging from 0.8 to 80 mmol L⁻¹. Ferric ions (Fe(III)) enhanced CH₃Br production, while chloride inhibited it, with or without Fe(III). Meanwhile, methyl chloride (CH₃Cl) was generated in the presence of chloride and was inhibited by Fe(III). The different effects of Fe(III) on the formation of CH₃Cl and CH₃Br indicate their diverse formation paths. Based on the intermediates identified by liquid chromatography-mass spectrometry and the confirmation of the formation of Fe(III)-SA complexes, it was proposed that there were two formation paths of CH₃Br from SA in the bromide-enriched water under simulated sunlight irradiation. One path was via nucleophilic attack of Br⁻ on the excited state protonation of SA; the other was via the combination of methyl radical and bromine radical when Fe(III) was present. This work suggests that the photochemical formation of CH₃Br may act as a potential natural source of CH₃Br in the bromide-enriched environmental matrix, and helps in better understanding the formation mechanism of CH₃Br.

Sources and sinks of chloromethane in a salt marsh ecosystem: constraints from concentration and stable isotope measurements of laboratory incubation experiments

Chloromethane (CH₃Cl) is the most abundant long-lived chlorinated organic compound in the atmosphere and contributes significantly to natural stratospheric ozone depletion. Salt marsh ecosystems including halophyte plants are a known source of atmospheric CH₃Cl but estimates of their total global source strength are highly uncertain and knowledge of the major production and consumption processes in the atmosphere-halophyte-soil system is yet incomplete. In this study we investigated the halophyte plant, Salicornia europaea, and soil samples from a coastal salt marsh site in Sardinia/Italy for their potential to emit and consume CH₃Cl and using flux measurements, stable isotope techniques and Arrhenius plots differentiated between biotic and abiotic processes. Our laboratory approach clearly shows that at least 6 different production and consumption processes are active in controlling atmospheric CH₃Cl fluxes of a salt marsh ecosystem. CH₃Cl release by dried plant and soil material was substantially higher than that from the fresh material at temperatures ranging from 20 to 70 °C. Results of Arrhenius plots helped to distinguish between biotic and abiotic formation processes in plants and soils. Biotic CH₃Cl consumption rates were highest at 30 °C for plants and 50 °C for soils, and microbial uptake was higher in soils with higher organic matter content. Stable isotope techniques helped to distinguish between formation and degradation processes and also provided a deeper insight into potential methyl moiety donor compounds, such as S-adenosyl-l-methionine, S-methylmethionine and pectin, that might be involved in the abiotic and biotic CH₃Cl production processes. Our results clearly indicate that cycling of CH₃Cl in salt marsh ecosystems is a result of several biotic and abiotic processes occurring simultaneously in the atmosphere-plant-soil system. Important precursor compounds for biotic and abiotic CH₃Cl formation might be methionine derivatives and pectin. All formation and degradation processes are temperature dependent and thus environmental changes might affect the strength of each source and sink within salt marsh ecosystems and thus considerably alter total fluxes of CH₃Cl from salt marsh ecosystems to the atmosphere.

Chlorine Isotope Fractionation of the Major Chloromethane Degradation Processes in the Environment

Chloromethane (CH₃Cl) is an important source of chlorine in the stratosphere, but detailed knowledge of the magnitude of its sources and sinks is missing. Here, we measured the stable chlorine isotope fractionation (ε_Cl) associated with the major abiotic and biotic CH₃Cl sinks in the environment, namely, CH₃Cl degradation by hydroxyl (^·OH) and chlorine (^·Cl) radicals in the troposphere and by reference bacteria Methylorubrum extorquens CM4 and Leisingera methylohalidivorans MB2 from terrestrial and marine environments, respectively. No chlorine isotope fractionation was detected for reaction of CH₃Cl with ^·OH and ^·Cl radicals, whereas a large chlorine isotope fractionation (ε_Cl) of -10.9 ± 0.7‰ (n = 3) and -9.4 ± 0.9 (n = 3) was found for CH₃Cl degradation by M. extorquens CM4 and L. methylohalidivorans MB2, respectively. The large difference in chlorine isotope fractionation observed between tropospheric and bacterial degradation of CH₃Cl provides an effective isotopic tool to characterize and distinguish between major abiotic and biotic processes contributing to the CH₃Cl sink in the environment. Our findings demonstrate the potential of emerging triple-element isotopic approaches including chlorine to carbon and hydrogen analysis for the assessment of global cycling of organochlorines.

Microbial Methylation of Iodide in Unconfined Aquifer Sediments at the Hanford Site, USA

Incomplete knowledge of environmental transformation reactions limits our ability to accurately inventory and predictably model the fate of radioiodine. The most prevalent chemical species of iodine include iodate (IO₃⁻), iodide (I⁻), and organo-iodine. The emission of gaseous species could be a loss or flux term but these processes have not previously been investigated at radioiodine-impacted sites. We examined iodide methylation and volatilization for Hanford Site sediments from three different locations under native and organic substrate amended conditions at three iodide concentrations. Aqueous and gaseous sampling revealed methyl-iodide to be the only iodinated compound produced under biotic conditions. No abiotic transformations of iodide were measured. Methyl-iodide was produced by 52 out of 54 microcosms, regardless of prior exposure to iodine contamination or the experimental concentration. Interestingly, iodide volatilization activity was consistently higher under native (oligotrophic) Hanford sediment conditions. Carbon and nutrients were not only unnecessary for microbial activation, but supplementation resulted in >three-fold reduction in methyl-iodide formation. This investigation not only demonstrates the potential for iodine volatilization in deep, oligotrophic subsurface sediments at a nuclear waste site, but also emphasizes an important role for biotic methylation pathways to the long-term management and monitoring of radioiodine in the environment.

Iodine biofortification through expression of HMT, SAMT and S3H genes in Solanum lycopersicum L

The uptake process and physiological reaction of plants to aromatic iodine compounds have not yet been documented. The aim of this research was to compare uptake by tomato plants of KI and KIO₃, as well as of organic iodine compounds - 5-ISA (5-iodosalicylic acid), 3,5-diISA (3,5-diiodosalicylic acid), 2-IBeA (2-iodobenzoic acid), 4-IBeA (4-iodobenzoic acid) and 2,3,5-triIBeA (2,3,5-triiodobenzoic acid). Only 2,3,5-triIBeA had a negative influence on plant development. All organic iodine compounds were taken up by roots and transported to leaves and fruits. Among all the compounds applied, the most efficiently transferred iodine was 2-IBeA - to fruits, and 4-IBeA - to leaves. The order of iodine accumulation in fruit cell compartments was as follows: organelles > cell walls > soluble portions of cells; for leaf and root cells, it was: organelles > cell walls or soluble portions, depending on the compound applied. The compounds studied influence iodine metabolism through expression of the HMT gene which encodes halide ion methyltransferase in leaves and roots. Also, their influence on modification of the activity of the SAMT and S3H genes that encode salicylic acid carboxyl methyltransferase and salicylic acid 3-hydroxylase was established. It was discovered that exogenously applied 5-ISA, 3,5-diISA, 2-IBeA and 4-IBeA are genuinely (endogenously) synthesised in tomato plants; to date, this has not been described for the tomato, nor for any other species of higher plant.

Abiotic Methylation of Tetrabromobisphenol A (TBBPA) with the Occurrence of Methyl Iodide in Aqueous Environments

Tetrabromobisphenol A (TBBPA) is the most widely used brominated flame retardant in the world. Its biotic methylation products, tetrabromobisphenol A mono- and dimethyl ether (TBBPA MME and TBBPA DME, respectively), are frequently detected in the environment, but the importance of abiotic methylation reactions of TBBPA in the environment is not known. In this study, the methylation of TBBPA mediated by methyl iodide (CH₃I), a ubiquitous compound in aqueous environments, was investigated in simulated waters in the laboratory. It was found that abiotic methylation occurred under both light and dark conditions and was strongly affected by the pH, temperature, and natural organic matter concentration of the water. Abiotic methylation was further verified in natural river water, and the yield of TBBPA MME mediated abiotically by CH₃I was much greater than that of biotic methylation. According to our calculations and by comparison of the activation energies (E _a) for the abiotic methylation of TBBPA and the other four typical phenolic contaminants and/or metabolites (bisphenol A, triclosan, 5-OH-BDE-47, and 4'-OH-CB-61) mediated by CH₃I, those phenolic compounds all show great methylation potentials. The results indicate a new abiotic pathway for generating TBBPA MME and TBBPA DME from TBBPA, and they also confirm the potentials for abiotic methylation of other phenolic contaminants in aqueous environments.

Evaluating the GHG mitigation-potential of alternate wetting and drying in rice through life cycle assessment

Alternate wetting and drying (AWD), has gained increasing attention as a promising strategy for mitigating greenhouse gas emissions (GHG) in flooded rice systems. AWD involves periodic drainage of rice paddies in order to inhibit methane (CH₄) emissions. To date, studies evaluating this practice have been limited in their scope and resolution. Our study evaluates the mitigation potential of AWD from a life cycle perspective using high-resolution CH₄ modeling to more accurately estimate the mitigation potential of this practice. We simulated California rice production under continuous flooding and under five AWD schedules ranging in the severity and frequency of dry-downs. Production models were coupled with the Peatland Ecosystem Photosynthesis Respiration and Methane Transport (PEPRMT) model to simulate CH₄ fluxes at daily intervals. We then evaluated the GHG mitigation potential of AWD using life cycle assessment models. Frequent or severe dry-downs reduced simulated grain yields, which negated some of the benefits of AWD when assessed on a yield-scaled basis. We also found AWD-induced mitigation of CH₄ emissions modeled with PEPRMT to be roughly half the magnitude reported from up-scaling of chamber measurements, highlighting the importance of high resolution field data to better characterize GHGs in rice systems. Reduced yields and conservative CH₄ mitigation in our model lessened the overall mitigation potential of AWD. When the entire rice life cycle was considered, mitigation of overall global warming potential (GWP) was further reduced by the presence of additional GHG sources, which comprised roughly half of life cycle GWP. Our simulations resulted in ≤12% reductions in GWP kg^-1 across all AWD scenarios and saw an increase in GWP when yields were severely reduced. Our results highlight the importance of constraining uncertainties in CH₄ emissions and considering a life cycle perspective expressed on a yield-scaled basis in characterizing the mitigation potential of AWD.

Marine versus Continental Sources of Iodine and Selenium in Rainfall at Two European High-Altitude Locations

The essential elements selenium (Se) and iodine (I) are often present in low levels in terrestrial diets, leading to potential deficiencies. Marine I and Se emissions and subsequent atmospheric wet deposition has been suggested to be an important source of I and Se to soils and terrestrial food chains. However, the contribution of recycled moisture of continental origin to I and Se to precipitation has never been analyzed. Here we report concentrations and speciation of I and Se, as well as of bromine (Br), sulfur (S), and DOC-δ¹³C signatures for weekly collected precipitation samples (in the period of April 2015 to September 2016) at two high altitude sites, i.e., Jungfraujoch (JFJ; Switzerland) and Pic du Midi (PDM; France). Analysis of precipitation chemistry and moisture sources indicate combined marine and continental sources of precipitation and Se, I, Br, and S at both sites. At JFJ, concentrations of I and Se were highest when continental moisture sources were dominant, indicating important terrestrial sources for these elements. Furthermore, correlations between investigated elements and DOC-δ¹³C, particularly when continental moisture source contributions were high, indicate a link between these elements and the source of dissolved organic matter, especially for I (JFJ and PDM) and Se (JFJ).

Organic iodine supply affects tomato plants differently than inorganic iodine

Iodine is a beneficial element for humans but very lowly represented in our diet. Iodine-enriched vegetables could boost the iodine content in the food chain. Despite being a beneficial element for plants, little is known about the effect of different iodine forms on plant growth. This work analyses the effect of uptake of mineral (KI) and organoiodine (5-iodosalicylic acid, 5-ISA; 3,5-diiodosalicylic acid, 3,5-di-ISA; 2-iodobenzoic acid, 2-IBeA; 4-iodobenzoic acid, 4-IBeA) compounds on tomato plants at an early stage of vegetative growth. As many organoiodine compounds are derived from salicylic (SA) and benzoic acids (BeA), treatments with I, SA and BeA in various treatments were realized and the influence of tested compounds on plant growth was analyzed. Iodine content was measured, as well as expression of key genes involved in I and SA metabolism. Organoiodine compounds accumulated mainly in roots whereas iodine accumulated in the upper parts when given as KI. The shoot system had 5, 12 and 25 times higher iodine content after KI treatment than after 4-IBeA, 5-ISA and 2-IBeA, or 3,5-diISA treatments, respectively. A toxic effect on plants was observed only for 3,5-diISA and 4-IBeA. The expression levels of a gene related to iodine metabolism (HMT, halide ion methylotransferase), a gene responsible for SA methylation in leaves (SAMT) and a gene related to SA catabolism (S3H, salicylic acid 3-hydroxylase) were modified differently depending on the iodine source. Overall, our data point out to a difference in plant uptake, transport of iodine in tomato plants based on the form of iodine compound.

The way forward confronting eco-environmental challenges during land-use practices: a bibliometric analysis

With rapid urbanisation and industrialisation, land-use practice, while satisfying the ever-increasing desires of our material civilisation in the short term, may undermine natural ecosystems on a local, regional and global scale in the long run. Innovative and sustainable land-use practices should be developed in response, so that eco-environmental problems can assessed and dealt with during the whole process of land-use planning, construction, operation, maintenance and management. Using a bibliometric analysis, this study has traced global trends in land-use research from 1992 to 2016, as indexed in the Science Citation Index EXPANDED (SCI-EXPANDED) and the Social Sciences Citation Index (SSCI). A novel method called 'word cluster analysis' has revealed that hotspot analysis is one of the emerging techniques, tools and strategies used to respond to, improve, and protect deteriorating ecosystems during land use. Based on involving various elements, the emerging analytical techniques and tools, including geographical information systems (GIS) and remote sensing, have attracted attention for their ability to assess and solve increasingly serious eco-environmental problems, such as climate change, deforestation, soil erosion, greenhouse gas (GHG) emissions and eutrophication. Ecosystem services, biodiversity conservation, protected areas, and sustainable development are also potential resilience strategies used to confront eco-environmental destruction. The maximum benefits that can be derived from natural ecosystems should be pursued to achieve environmentally sustainable land-use development, strengthening the socio-economy and eco-environment, as well as enhancing the well-being of people and nature.

Chloromethane formation and degradation in the fern phyllosphere

Chloromethane (CH₃Cl) is the most abundant halogenated trace gas in the atmosphere. It plays an important role in natural stratospheric ozone destruction. Current estimates of the global CH₃Cl budget are approximate. The strength of the CH₃Cl global sink by microbial degradation in soils and plants is under discussion. Some plants, particularly ferns, have been identified as substantial emitters of CH₃Cl. Their ability to degrade CH₃Cl remains uncertain. In this study, we investigated the potential of leaves from 3 abundant ferns (Osmunda regalis, Cyathea cooperi, Dryopteris filix-mas) to produce and degrade CH₃Cl by measuring their production and consumption rates and their stable carbon and hydrogen isotope signatures. Investigated ferns are able to degrade CH₃Cl at rates from 2.1 to 17 and 0.3 to 0.9μgg_dw^-1day^-1 for C. cooperi and D. filix-mas respectively, depending on CH₃Cl supplementation and temperature. The stable carbon isotope enrichment factor of remaining CH₃Cl was -39±13‰, whereas negligible isotope fractionation was observed for hydrogen (-8±19‰). In contrast, O. regalis did not consume CH₃Cl, but produced it at rates ranging from 0.6 to 128μgg_dw^-1day^-1, with stable isotope values of -97±8‰ for carbon and -202±10‰ for hydrogen, respectively. Even though the 3 ferns showed clearly different formation and consumption patterns, their leaf-associated bacterial diversity was not notably different. Moreover, we did not detect genes associated with the only known chloromethane utilization pathway "cmu" in the microbial phyllosphere of the investigated ferns. Our study suggests that still unknown CH₃Cl biodegradation processes on plants play an important role in global cycling of atmospheric CH₃Cl.

Phytolith assemblage analysis for the identification of rice paddy

The rice arable system is of importance to both society and the environment. The emergence of rice paddies was a crucial step in the transition from pre-domestic cultivation to systematic land use and management. However, many aspects of the formation of rice farming systems remain unclear. An important reason is the lack of reliable methods for identifying early rice paddies. One possible means of remedying this knowledge deficit is through analysis of phytolith assemblages, which are closely related to their parent plant communities. In this study, phytolith assemblages from 27 surface soil samples from wild rice fields, 91 surface soil samples from modern rice paddies, and 50 soil samples from non-rice fields were analysed to establish a discriminant function. This discriminant function enabled classification of 89.3% of the samples into appropriate groups. Further, the results suggested that phytolith assemblages can be used to identify rice fields and differentiate between wild rice fields and domesticated rice fields. The method was demonstrated to be an effective way of utilising the large amounts of unidentifiable phytoliths discovered at archaeological sites to provide a modern analogue that may be a valuable key to unlocking the past.

Greenhouse Gas Emissions and Management Practices that Affect Emissions in US Rice Systems

Previous reviews have quantified factors affecting greenhouse gas (GHG) emissions from Asian rice ( L.) systems, but not from rice systems typical for the United States, which often vary considerably particularly in practices (i.e., water and carbon management) that affect emissions. Using meta-analytic and regression approaches, existing data from the United States were examined to quantify GHG emissions and major practices affecting emissions. Due to different production practices, major rice production regions were defined as the mid-South (Arkansas, Texas, Louisiana, Mississippi, and Missouri) and California, with emissions being evaluated separately. Average growing season CH emissions for the mid-South and California were 194 (95% confidence interval [CI] = 129-260) and 218 kg CH ha season (95% CI = 153-284), respectively. Growing season NO emissions were similar between regions (0.14 kg NO ha season). Ratoon cropping (allowing an additional harvestable crop to grow from stubble after the initial harvest), common along the Gulf Coast of the mid-South, had average CH emissions of 540 kg CH ha season (95% CI = 465-614). Water and residue management practices such as alternate wetting and drying, and stand establishment method (water vs. dry seeding), and the amount of residue from the previous crop had the largest effect on growing season CH emissions. However, soil texture, sulfate additions, and cultivar selection also affected growing season CH emissions. This analysis can be used for the development of tools to estimate and mitigate GHG emissions from US rice systems and other similarly mechanized systems in temperate regions.

Shifts from methyl chloride sink to source functions within a coastal salt marsh in eastern China: an examination of the effects of biomass burning prohibition policies

Our previous study found that a salt marsh in eastern China can act as a large CH₃Cl sink. One striking finding of this previous study was a strong relationship between high-ambient CH₃Cl concentrations and fluxes during the growing season. Moreover, the high-ambient CH₃Cl concentration was likely to be related to local biomass burning. However, implementation of biomass burning prohibition policies has effectively reduced biomass burning. Therefore, we predicted that the prohibition of biomass burning would alter CH₃Cl concentration and flux within the eastern Chinese coastal salt marsh. In this study, we used static flux chambers to measure CH₃Cl fluxes in the early (July of 2004 and January of 2005) and middle-late stages (August and December of 2013) of biomass burning prohibition of along a creek and vegetation transects of the salt marsh. After implementation of the biomass burning prohibition, the concentration and flux of CH₃Cl directly related to biomass burning changed remarkably. During the middle-late stage of prohibition, the initial CH₃Cl concentration was significantly reduced compared to during the early stage of prohibition. Reductions in atmospheric CH₃Cl concentration were especially apparent during the growing season, when biomass burning was prohibited and atmospheric CH₃Cl concentration dropped to levels nearly as low as the Northern Hemisphere background concentration. Atmospheric CH₃Cl concentration significantly varied throughout the salt marsh, with the highest concentrations appearing over the inland areas and mudflat and lower values occurring over the middle locations. This spatial distribution of CH₃Cl may have been directly related to the existence and distribution of potential CH₃Cl sources, such as coastal seawater, terrestrial biomass burning, and senescent and decaying aboveground biomass. These changes in initial CH₃Cl concentration caused by the biomass burning prohibition may eventually lead to shift in the salt marsh from the tendency to act as a CH₃Cl sink to the tendency to act as a CH₃Cl source. When the initial atmospheric CH₃Cl concentration was high, the vegetation stands acted as CH₃Cl sinks. Conversely, they became CH₃Cl sources. Therefore, we conclude that the biomass burning prohibition altered the ecosystem-atmosphere exchange of CH₃Cl within the studied eastern Chinese coastal salt marsh.

Chloromethane emissions in human breath

Chloromethane (CH₃Cl), currently the most abundant chlorinated organic compound in the atmosphere at around ~550 parts per trillion by volume (pptv), is considered responsible for approximately 16% of halogen-catalyzed stratospheric ozone destruction. Although emissions of CH₃Cl are known to occur from animals such as cattle, formation and release of CH₃Cl from humans has not yet been reported. In this study a pre-concentration unit coupled with a gas chromatograph directly linked to a mass spectrometer was used to precisely measure concentrations of CH₃Cl at the pptv level in exhaled breath from 31 human subjects with ages ranging from 3 to 87years. We provide analytical evidence that all subjects exhaled CH₃Cl in the range of 2.5 to 33 parts per billion by volume, levels which significantly exceed those of inhaled air by a factor of up to 60. If the mean of these emissions was typical for the world's population, then the global source of atmospheric CH₃Cl from humans would be around 0.66Ggyr^-1 (0.33 to 1.48Ggyr^-1), which is less than 0.03% of the total annual global atmospheric source strength. The observed endogenous formation of a chlorinated methyl group in humans might be of interest to biochemists and medical scientists as CH₃Cl is also known to be a potent methylating agent and thus, could be an important target compound in future medical research diagnostic programs.

Imaging the dynamics of ion–molecule reactions

A range of ion–molecule reactions have been studied in the last years using the crossed-beam ion imaging technique, from charge transfer and proton transfer to nucleophilic substitution and elimination.

Microbial Transformation of Iodine: From Radioisotopes to Iodine Deficiency

Iodine is a biophilic element that is important for human health, both as an essential component of several thyroid hormones and, on the other hand, as a potential carcinogen in the form of radioiodine generated by anthropogenic nuclear activity. Iodine exists in multiple oxidation states (-1, 0, +1, +3, +5, and +7), primarily as molecular iodine (I₂), iodide (I^-), iodate [Formula: see text] , or organic iodine (org-I). The mobility of iodine in the environment is dependent on its speciation and a series of redox, complexation, sorption, precipitation, and microbial reactions. Over the last 15years, there have been significant advances in iodine biogeochemistry, largely spurred by renewed interest in the fate of radioiodine in the environment. We review the biogeochemistry of iodine, with particular emphasis on the microbial processes responsible for volatilization, accumulation, oxidation, and reduction of iodine, as well as the exciting technological potential of these fascinating microorganisms and enzymes.

Understanding of anesthesia - Why consciousness is essential for life and not based on genes

Anesthesia and consciousness represent 2 mysteries not only for biology but also for physics and philosophy. Although anesthesia was introduced to medicine more than 160 y ago, our understanding of how it works still remains a mystery. The most prevalent view is that the human brain and its neurons are necessary to impose the effects of anesthetics. However, the fact is that all life can be anesthesized. Numerous theories have been generated trying to explain the major impact of anesthetics on our human-specific consciousness; switching it off so rapidly, but no single theory resolves this enduring mystery. The speed of anesthetic actions precludes any direct involvement of genes. Lipid bilayers, cellular membranes, and critical proteins emerge as the most probable primary targets of anesthetics. Recent findings suggest, rather surprisingly, that physical forces underlie both the anesthetic actions on living organisms as well as on consciousness in general.

Volatile Gas Production by Methyl Halide Transferase: An In Situ Reporter Of Microbial Gene Expression In Soil

Traditional visual reporters of gene expression have only very limited use in soils because their outputs are challenging to detect through the soil matrix. This severely restricts our ability to study time-dependent microbial gene expression in one of the Earth's largest, most complex habitats. Here we describe an approach to report on dynamic gene expression within a microbial population in a soil under natural water levels (at and below water holding capacity) via production of methyl halides using a methyl halide transferase. As a proof-of-concept application, we couple the expression of this gas reporter to the conjugative transfer of a bacterial plasmid in a soil matrix and show that gas released from the matrix displays a strong correlation with the number of transconjugant bacteria that formed. Gas reporting of gene expression will make possible dynamic studies of natural and engineered microbes within many hard-to-image environmental matrices (soils, sediments, sludge, and biomass) at sample scales exceeding those used for traditional visual reporting.

Iodine isotopes in precipitation: Four-year time series variations before and after 2011 Fukushima nuclear accident

Rainwater samples were collected monthly from Fukushima, Japan, in 2012-2014 and analysed for (127)I and (129)I. These are combined with previously reported data to investigate atmospheric levels and behaviour of Fukushima-derived (129)I before and after the 2011 nuclear accident. In the new datasets, (127)I and (129)I concentrations between October 2012 and October 2014 varied from 0.5 to 10 μg/L and from 1.2 × 10(8) to 6.9 × 10(9) atoms/L respectively, resulting in (129)I/(127)I atomic ratio ranges from 3 × 10(-8) to 2 × 10(-7). The (127)I concentrations were in good agreement with those in the previous period from March 2011 to September 2012, whereas the (129)I concentrations and (129)I/(127)I ratios followed declining trends since the accident. Although (129)I concentrations in five samples during the period of 2013-2014 have approached the pre-accident levels, (129)I concentrations in most samples remained higher values in winter and spring-summer. The high (129)I levels in winter and spring-summer are most likely attributed to local resuspension of the Fukushima-derived radionuclide-bearing fine soil particles deposited on land surfaces, and re-emission through vegetation taking up (129)I from contaminated soil and water, respectively. Long-term declining rate suggests that contribution of the Fukushima-derived (129)I to the atmosphere would become less since 2014.

Soil versus foliar iodine fertilization as a biofortification strategy for field-grown vegetables

Iodine (I) biofortification of vegetables by means of soil and foliar applications was investigated in field experiments on a sandy loam soil. Supply of iodine to the soil in trial plots fertilized with potassium iodide (KI) and potassium iodate directly before planting (0, 1.0, 2.5, 7.5, and 15 kg I ha(-1)) increased the iodine concentration in the edible plant parts. The highest iodine accumulation levels were observed in the first growing season: In butterhead lettuce and kohlrabi the desired iodine content [50-100 μg I (100 g FM)(-1)] was obtained or exceeded at a fertilizer rate of 7.5 kg IO3 (-)-I ha(-1) without a significant yield reduction or impairment of the marketable quality. In contrast, supplying KI at the same rate resulted in a much lower iodine enrichment and clearly visible growth impairment. Soil applied iodine was phytoavailable only for a short period of time as indicated by a rapid decline of CaCl2-extractable iodine in the top soil. Consequently, long-term effects of a one-time iodine soil fertilization could not be observed. A comparison between the soil and the foliar fertilization revealed a better performance of iodine applied aerially to butterhead lettuce, which reached the desired iodine accumulation in edible plant parts at a fertilizer rate of 0.5 kg I(-)-I ha(-1). In contrast, the iodine content in the tuber of sprayed kohlrabi remained far below the targeted range. The results indicate that a sufficient spreading of iodine applied on the edible plant parts is crucial for the efficiency of the foliar approach and leafy vegetables are the more suitable target crops. The low iodine doses needed as well as the easy and inexpensive application may favor the implementation of foliar sprays as the preferred iodine biofortification strategy in practice.

Naturally occurring organoiodines

This review, with 290 references, presents the fascinating area of iodinated natural products over the past hundred years for the first time.

Optimal fertilizer nitrogen rates and yield-scaled global warming potential in drill seeded rice

Drill seeded rice ( L.) is the dominant rice cultivation practice in the United States. Although drill seeded systems can lead to significant CH and NO emissions due to anaerobic and aerobic soil conditions, the relationship between high-yielding management practices, particularly fertilizer N management, and total global warming potential (GWP) remains unclear. We conducted three field experiments in California and Arkansas to test the hypothesis that by optimizing grain yield through N management, the lowest yield-scaled global warming potential (GWP = GWP Mg grain) is achieved. Each growing season, urea was applied at rates ranging from 0 to 224 kg N ha before the permanent flood. Emissions of CH and NO were measured daily to weekly during growing seasons and fallow periods. Annual CH emissions ranged from 9.3 to 193 kg CH-C ha yr across sites, and annual NO emissions averaged 1.3 kg NO-N ha yr. Relative to NO emissions, CH dominated growing season (82%) and annual (68%) GWP. The impacts of fertilizer N rates on GHG fluxes were confined to the growing season, with increasing N rate having little effect on CH emissions but contributing to greater NO emissions during nonflooded periods. The fallow period contributed between 7 and 39% of annual GWP across sites years. This finding illustrates the need to include fallow period measurements in annual emissions estimates. Growing season GWP ranged from 130 to 686 kg CO eq Mg season across sites and years. Fertilizer N rate had no significant effect on GWP; therefore, achieving the highest productivity is not at the cost of higher GWP.

Abiotic formation of methyl iodide on synthetic birnessite: a mechanistic study

Methyl iodide is a well-known volatile halogenated organic compound that contributes to the iodine content in the troposphere, potentially resulting in damage to the ozone layer. Most methyl iodide sources derive from biological activity in oceans and soils with very few abiotic mechanisms proposed in the literature. In this study we report that synthetic manganese oxide (birnessite δ-MnO2) can catalyze the formation of methyl iodide in the presence of natural organic matter (NOM) and iodide. Methyl iodide formation was only observed at acidic pH (4-5) where iodide is oxidized to iodine and NOM is adsorbed on δ-MnO2. The effect of δ-MnO2, iodide and NOM concentrations, nature of NOM and ionic strength was investigated. High concentrations of methyl iodide were formed in experiments conducted with the model compound pyruvate. The Lewis acid property of δ-MnO2 leads to a polarization of the iodine molecule, and catalyzes the reaction with natural organic matter. As manganese oxides are strong oxidants and are ubiquitous in the environment, this mechanism could significantly contribute to the global atmospheric input of iodine.

Tomato fruits: a good target for iodine biofortification

IODINE IS A TRACE ELEMENT THAT IS FUNDAMENTAL FOR HUMAN HEALTH

its deficiency affects about two billion people worldwide. Fruits and vegetables are usually poor sources of iodine; however, plants can accumulate iodine if it is either present or exogenously administered to the soil. The biofortification of crops with iodine has therefore been proposed as a strategy for improving human nutrition. A greenhouse pot experiment was carried out to evaluate the possibility of biofortifying tomato fruits with iodine. Increasing concentrations of iodine supplied as KI or KIO3 were administered to plants as root treatments and the iodine accumulation in fruits was measured. The influences of the soil organic matter content or the nitrate level in the nutritive solution were analyzed. Finally, yield and qualitative properties of the biofortified tomatoes were considered, as well as the possible influence of fruit storage and processing on the iodine content. Results showed that the use of both the iodized salts induced a significant increase in the fruit's iodine content in doses that did not affect plant growth and development. The final levels ranged from a few mg up to 10 mg iodine kg (-) (1) fruit fresh weight and are more than adequate for a biofortification program, since 150 μg iodine per day is the recommended dietary allowance for adults. In general, the iodine treatments scarcely affected fruit appearance and quality, even with the highest concentrations applied. In contrast, the use of KI in plants fertilized with low doses of nitrate induced moderate phytotoxicity symptoms. Organic matter-rich soils improved the plant's health and production, with only mild reductions in iodine stored in the fruits. Finally, a short period of storage at room temperature or a 30-min boiling treatment did not reduce the iodine content in the fruits, if the peel was maintained. All these results suggest that tomato is a particularly suitable crop for iodine biofortification programs.

Ten years of continuous observations of stratospheric ozone depleting gases at Monte Cimone (Italy)--comments on the effectiveness of the Montreal Protocol from a regional perspective

Halogenated gases potentially harmful to the stratospheric ozone layer are monitored worldwide in order to assess compliance with the Montreal Protocol requiring a phase out of these compounds on a global scale. We present the results of long term (2002-2011) continuous observation conducted at the Mt. Cimone GAW Global Station located on the highest peak of the Italian Northern Apennines, at the border of two important regions: the Po Valley (and the Alps) to the North and the Mediterranean Basin to the South. Bi-hourly air samples of CFC-12, CFC-11, CFC-114, CFC-115, H-1211, H-1301, methyl chloroform, carbon tetrachloride, HCFC-22, HCFC-142b, HCFC-124 and methyl bromide are collected and analysed using a gas chromatograph-mass spectrometer, providing multi annual time series. In order to appreciate the effectiveness of the Montreal Protocol from a regional perspective, trends and annual growth rates of halogenated species have been calculated after identification of their baseline values. A comparison with results from other international observation programmes is also presented. Our data show that the peak in the atmospheric mixing ratios of four chlorofluorocarbons, two halons and two chlorocarbons has been reached and all these species now show a negative atmospheric trend. Pollution episodes are still occurring for species like halon-1211, methyl chloroform and carbon tetrachloride, indicating fresh emissions from the site domain which could be ascribed both to fugitive un-reported uses of the compounds and/or emissions from banks. For the hydrofluorocarbons changes in the baseline are affected by emissions from fast developing Countries in East Asia. Fresh emissions from the site domain are clearly declining. Methyl bromide, for which the Mediterranean area is an important source region, shows, in a generally decreasing trend, an emission pattern that is not consistent with the phase-out schedule of this compound, with a renewed increase in the last two years of pollution episodes.

Assessing California groundwater susceptibility using trace concentrations of halogenated volatile organic compounds

Twenty-four halogenated volatile organic compounds (hVOCs) and SF₆ were measured in groundwater samples collected from 312 wells across California at concentrations as low as 10⁻¹² grams per kilogram groundwater. The hVOCs detected are predominately anthropogenic (i.e., "ahVOCs") and as such their distribution delineates where groundwaters are impacted and susceptible to human activity. ahVOC detections were broadly consistent with air-saturated water concentrations in equilibrium with a combination of industrial-era global and regional hVOC atmospheric abundances. However, detection of ahVOCs in nearly all of the samples collected, including ancient groundwaters, suggests the presence of a sampling or analytical artifact that confounds interpretation of the very-low concentration ahVOC data. To increase our confidence in ahVOC detections we establish screening levels based on ahVOC concentrations in deep wells drawing ancient groundwater in Owens Valley. Concentrations of ahVOCs below the Owens Valley screening levels account for a large number of the detections in prenuclear groundwater across California without significant loss of ahVOC detections in shallow, recently recharged groundwaters. Over 80% of the groundwaters in this study contain at least one ahVOC after screening, indicating that the footprint of human industry is nearly ubiquitous and that most California groundwaters are vulnerable to contamination from land-surface activities.

Organic and inorganic carbon in paddy soil as evaluated by mid-infrared photoacoustic spectroscopy

Paddy soils are classified as wetlands which play a vital role in climatic change and food production. Soil carbon (C), especially soil organic C (SOC), in paddy soils has been received considerable attention as of recent. However, considerably less attention has been given to soil inorganic carbon (SIC) in paddy soils and the relationship between SOC and SIC at interface between soil and the atmosphere. The objective of this research was to investigate the utility of applying Fourier transform mid-infrared photoacoustic spectroscopy (FTIR-PAS) to explore SOC and SIC present near the surface (0-10 µm) of paddy soils. The FTIR-PAS spectra revealed an unique absorption region in the wavenumber range of 1,350-1,500 cm(-1) that was dominated by C-O (carbonate) and C-H bending vibrations (organic materials), and these vibrations were used to represented SIC and SOC, respectively. A circular distribution between SIC and SOC on the surface of paddy soils was determined using principal component analysis (PCA), and the distribution showed no significant relationship with the age of paddy soil. However, SIC and SOC were negatively correlated, and higher SIC content was observed near the soil surface. This relationship suggests that SIC in soil surface plays important roles in the soil C dynamics.