Understanding nitrate assimilation and its regulation in microalgae

Physiological and molecular responses to urea environment in Cladocopium goreaui (Symbiodiniaceae)

Nitrogen is an essential nutrient for photosynthetic productivity, and its enrichment in coral reef ecosystems due to anthropogenic activities has raised concerns about ecological impacts. Urea is a readily available nitrogen source that can influence nitrogen dynamics in coral reef ecosystems, but the underlying mechanisms of its assimilation and utilization by coral symbionts remain unclear. This study investigates the physiological and molecular responses of Cladocopium goreaui to urea and nitrate, highlighting key differences in nitrogen assimilation. Although there was no significant difference in the expression of urease genes and proteins under urea and nitrate conditions, the form of nitrogen source did not affect urease activity; instead, nitrogen concentration was the primary factor influencing urease expression. Moreover, the regulation of C. goreaui gene expression by light intensity was more pronounced than the influence of nitrogen source type, suggesting that environmental light plays a more substantial role in gene regulation than the form of nitrogen available. In addition, transcriptomic analysis revealed that the response time of gene expression to nitrogen availability occurred approximately 2 h later than expected, emphasizing the delayed nature of the C. goreaui response. A total of 7786 differentially expressed genes (DEGs) were identified, including 2209 DEGs specific to urea treatment and 2675 DEGs specific to nitrate treatment. Proteomic analysis confirmed these findings, further detailing distinct nitrogen regulatory pathways, including stable metabolic responses to urea and dynamic shifts under nitrate treatment. Additionally, isotopic analyses showed that urea conditions resulted in higher δ13C and δ15N enrichment, indicating more efficient nitrogen and carbon assimilation. These results highlight the advantages of urea as an energetically favorable nitrogen source for C. goreaui, leading to stable metabolic responses and more efficient assimilation of both nitrogen and carbon. The findings underscore the metabolic flexibility of C. goreaui and its ability to adapt to varying nitrogen sources, with a greater impact from light conditions than nitrogen source type.

Proportions of Mn and Co in BMxC1-x perovskite altered catalytic performance and ecological safety: Insights into algal metabolic response

Perovskites have been widely used in catalysis because of high activity and low cost. Although the catalytic efficiency of perovskites could be strengthened by adjusting the type and proportion of B-site element, the relationship between their performance and ecological risks is unknown. In this study, three Ba-based perovskites with different proportions of Mn and Co at the B-site (BMCs) were synthesized to compare their catalytic efficiency in activation of peroxymonosulfate (PMS). Moreover, their toxicity to freshwater alga Chlorella vulgaris were evaluated. Increasing the B-site Mn/Co ratio populated the amount of the oxygen vacancies (OVs). BMC with the B-site Mn/Co ratio of 1: 1 exhibited the highest catalytic activity in PMS activation for degradation of aqueous 4-chlorophenol. All three perovskites induced the algal growth inhibition in a dose-dependent manner, followed by the order of BM0.8C0.2 > BM0.2C0.8 ≈ BM0.5C0.5. Microscopy observations collectively found that the B-site regulated perovskites could destroy cell structures. Notably, metabolite homeostasis in algal cells was disturbed by three BMCs, uridine monophosphate and pentacosanoic acid could be potential biomarkers for evaluating their ecotoxicity. The highest catalytic activity with relatively low toxicity of BMCs with the Mn/Co ratio of 1:1 at B-site, probably because of Mn release rather than OVs. This research expanded our perception of the ecotoxicity of new-type perovskites in aquatic environment.

Advances of microalgae-based enhancement strategies in industrial flue gas treatment: From carbon sequestration to lipid production

The acceleration of industrial development and urban expansion has led to a significant increase in flue gas emissions, posing a significant risk to human health and ecosystems. Recent studies have elucidated the significant potential of microalgae in the domain of sustainable industrial flue gas treatment. However, the inherent multifaceted factors within flue gas exert inhibitory effects on microalgal growth, thereby diminishing the overall system efficacy. Therefore, it is necessary to systematically analyze the flue gas components and propose complete intermediate treatment steps to alleviate their stressful effects on microalgae. Concurrently, to address the intrinsic limitations of the systemic functionality and enhance the applicability of microalgal biotechnology in industrial flue gas treatment, this review proposes a series of innovative solutions and strategies aimed at improving carbon fixation efficiency and lipid productivity of microalgae during flue gas treatment. In addition, the feasibility and potential limitations of these strategies in industrial applications are also discussed. Furthermore, through systematic comparative analysis, the optimal scheme and development trend of industrial flue gas emission reduction technology are explored. This comprehensive review not only establishes a theoretical foundation for the application of microalgae in industrial flue gas treatment, but also offers valuable insights for future research directions in related fields.

Selection and characterization of acid-tolerant Chlorophyta division microalgae for potential metabolites production in a bubble column bioreactor: A ready-to-industrial scale screening

Microalgae are promising candidates for sustainable bioprocesses owing to their ability to capture/utilize CO2 and produce valuable metabolites. However, strain-to-strain variability poses a challenge to industrial scalability. This paper reports a study on the screening of 28 Chlorophyta microalgal strains from six species cultivated under standardized semi-continuous conditions in a bubble column bioreactor. Growth kinetics, nitrogen uptake, and metabolite accumulation were analyzed to identify strains characterized by promising biomass/metabolite productivities. The results indicated two distinct kinetic behaviors: a large fraction of the investigated strains was characterized by a common biomass/nitrate uptake behavior, and a subset of the strain pool was characterized by atypical nitrogen assimilation patterns. Strains characterized by high biomass growth rates are characterized by high lipid productivity. Strains with intermediate biomass growth rates are characterized by high carbohydrate accumulation. Chlorella vulgaris (ACUF 058) and Chloroidium saccharophilum (ACUF 050) emerged as strong candidates for carbohydrate and protein production, respectively. This study proposed a systematic procedure for strain selection, bridging laboratory screening, and industrial feasibility. These results emphasize the role of tailored cultivation strategies in optimizing biomass yield and metabolite productivity. Further research integrating genomic and proteomic insights will enhance strain-specific process optimization, facilitating the large-scale deployment of microalgal bioprocesses.

Cultivation of high-protein Euglena gracilis for enhanced protein production under inorganic nitrogen sources: mechanisms revealed by proteomics

Amid global food shortage, alternative cost-effective protein sources are urgently needed for aquaculture and animal feed. Without a rigid cell wall, Euglena gracilis provides extractable, digestible proteins, and its high productivity makes it an ideal feed source. This study investigates the effects of different inorganic nitrogen sources on the biomass and biochemical composition of E. gracilis, and discusses the mechanisms of its nutrient transformation via proteomics. Results show ammonium nitrogen optimizes growth and protein accumulation by serving as an energy-efficient precursor for biomolecule synthesis compared to nitrate. Additionally, sulfate supplies sulfur for amino acid synthesis, and ammonium sulfate further enhances protein production. Under high-protein conditions, lipids and pigments increase while paramylon decreases significantly, underscoring nitrogen's role in carbon allocation and energy metabolism. This study establishes a metabolic framework for nitrogen-sulfur coordinated regulation of protein synthesis in E. gracilis, paving the way for its industrial application as a next-generation protein resource.

Unravelling the eco-monitoring potential of phytoplankton towards a sustainable aquatic ecosystem

Phytoplankton play an integral role in primary production in aquatic ecosystems, thus butressing its function as an important tool for pollution indication and water quality assessment. Their response mechanism towards the changes in nutrient levels and environmental conditions makes them valuable indicators of ecosystem health. The driver of this response is a complex molecular mechanism involving gene expression and metabolic pathways that allow microalgae to adapt and thrive in varying conditions. The current study shows how phytoplankton population and functional trait dynamics can serve as early signs of potential environmental stressors impacting aquatic ecosystems. This study is highly significant because it highlights the role of phytoplankton as sensitive and reliable bioindicators of aquatic ecosystem health. Thus, providing valuable information for monitoring and managing water quality in marine environments. Also, the study will provide a unique insight into understanding the impact of pollution on phytoplankton, which can also help inform conservation efforts to protect vulnerable species and ecosystems. The study linked the bioindicator role of phytoplankton to a complex molecular mechanisms involving alterations in gene expression, activation of stress-related signalling pathways, and shifts in metabolic profiles. These responses are often characterised by the production of reactive oxygen species (ROS), the upregulation of antioxidant defence systems, and modifications in lipid, protein, and pigment synthesis. The progress of the application of phytoplankton for biomonitoring has been hindered by issues such as sensitivity to multiple environmental variables, diversity of phytoplankton species, and complexity of community interactions. This challenge can be averted through the development of advanced monitoring techniques that can accurately detect and quantify toxins in real time.

Enhanced Marine VOC Emissions Driven by Terrestrial Nutrient Inputs and Their Impact on Urban Air Quality in Coastal Regions

Global ocean significantly contributes to atmospheric volatile organic compounds (VOCs), yet the characteristics, drivers, and impacts of marine VOC emissions on coastal air quality remain poorly understood due to limited marine-terrestrial data integration. Therefore, we conducted a study in the East China Sea─a region with high VOC emission potential─and a nearby coastal city in the Yangtze River Delta─a background receptor site. Seawater VOC emissions showed marked spatial variability, with alkenes forming an important component. Terrestrial inorganic nutrient inputs boosted marine primary productivity, elevating VOC concentrations and emissions. Interestingly, in the coastal city, severe photochemical pollution occurred when air masses originated predominantly from the sea. Although maritime air masses contained fewer VOCs, emissions from high-productivity seawater and shipping increased reactive alkene levels. Additionally, higher temperatures, stronger solar radiation, and reduced NO titration effects over the sea facilitated ozone formation. By integrating marine-terrestrial observations, this study underscores the impact of pollutant emissions from high-productivity seas on coastal air quality, particularly through secondary formation during long-range transport. The link between coastal seawater eutrophication and air photochemical pollution emphasizes the need for coordinated air and water pollution control in coastal cities. These findings may apply to other similar coastal environments worldwide.

Towards sustainable spirulina farming: Enhancing productivity and biosafety with a salinity-biostimulants strategy

Arthrospira platensis (spirulina) is pivotal to the global microalgae industry, valued for its nutritional and bioactive properties. However, its sustainable production is challenged by freshwater scarcity and biological contaminants. This study introduces a salinity-biostimulants strategy to adapt a freshwater spirulina strain, CBD05, to near-seawater salinity (3 %). Exogenous glycine betaine (GB) and nitric oxide (NO), typical salinity enhancers, improved biomass productivity (0.36 g L-1 d-1), C-phycocyanin (C-PC) yield (83 mg L-1 d-1), and the economic output-to-input ratio was significantly enhanced. Metabolomic analysis linked salt tolerance to elevated amino acid accumulation, protein synthesis, and glycolysis, while transcriptional evidence highlighted enhanced carbon fixation and nitrogen assimilation towards C-PC synthesis upon addition of GB and NO. This strategy also demonstrated high resistance to Microcystis aeruginosa, a common contaminant in open systems. It provides a sustainable and cost-effective approach for industry-oriented spirulina production in freshwater-limited regions.

Advancements of astaxanthin production in Haematococcus pluvialis: Update insight and way forward

The global market demand for natural astaxanthin (AXT) is growing rapidly owing to its potential human health benefits and diverse industry applications, driven by its safety, unique structure, and special function. Currently, the alga Haematococcus pluvialis (alternative name H. lacustris) has been considered as one of the best large-scale producers of natural AXT. However, the industry's further development faces two main challenges: the limited cultivation areas due to light-dependent AXT accumulation and the low AXT yield coupled with high production costs resulting from complex, time-consuming upstream biomass culture and downstream AXT extraction processes. Therefore, it is urgently to develop novel strategies to improve the AXT production in H. pluvialis to meet industrial demands, which makes its commercialization cost-effective. Although several strategies related to screening excellent target strains, optimizing culture condition for high biomass yield, elucidating the AXT biosynthetic pathway, and exploiting effective inducers for high AXT content have been applied to enhance the AXT production in H. pluvialis, there are still some unsolved and easily ignored perspectives. In this review, firstly, we summarize the structure and function of natural AXT focus on those from the algal H. pluvialis. Secondly, the latest findings regarding the AXT biosynthetic pathway including spatiotemporal specificity, transport, esterification, and storage are updated. Thirdly, we systematically assess enhancement strategies on AXT yield. Fourthly, the regulation mechanisms of AXT accumulation under various stresses are discussed. Finally, the integrated and systematic solutions for improving AXT production are proposed. This review not only fills the existing gap about the AXT accumulation, but also points the way forward for AXT production in H. pluvialis.

Multiomics integration unveils photoperiodic plasticity in the molecular rhythms of marine phytoplankton

Earth's tilted rotation and translation around the Sun produce pervasive rhythms on our planet, giving rise to photoperiodic changes in diel cycles. Although marine phytoplankton plays a key role in ecosystems, multiomics analysis of its responses to these periodic environmental signals remains largely unexplored. The marine picoalga Ostreococcus tauri was chosen as a model organism due to its cellular and genomic simplicity. Ostreococcus was subjected to different light regimes to investigate its responses to periodic environmental signals: long summer days, short winter days, constant light, and constant dark conditions. Although <5% of the transcriptome maintained oscillations under both constant conditions, 80% presented diel rhythmicity. A drastic reduction in diel rhythmicity was observed at the proteome level, with 39% of the detected proteins oscillating. Photoperiod-specific rhythms were identified for key physiological processes such as the cell cycle, photosynthesis, carotenoid biosynthesis, starch accumulation, and nitrate assimilation. In this study, a photoperiodic plastic global orchestration among transcriptome, proteome, and physiological dynamics was characterized to identify photoperiod-specific temporal offsets between the timing of transcripts, proteins, and physiological responses.

Biocatalytic conversion of microalgal biomass to biodiesel: optimization of growth conditions and synthesis of CaO bionanocatalyst from Monoraphidium sp. NCIM 5585

Microalgal feedstock is a potential source for biodiesel production that addresses the challenges of fuel security and sustainable agriculture. This study aims to maximize biomass yield and lipid accumulation for freshwater microalga Monoraphidium sp. NCIM 5585 and utilize it for biodiesel production, contributing to the development of biocatalysis-based biofuels. Independent optimization studies were conducted to investigate critical growth parameters, viz., light intensity, photoperiod, and NaNO3 concentration. The study showed highest biomass productivity of 51.75 ± 1.9 mg/L.d and lipid content of 47.3 ± 0.02% (w/w) at 40 µmol/m2/s light intensity, 16 h L:08 h D photoperiod, and 0.25 g/L NaNO3. Further, a novel CaO bionanocatalyst was synthesized using residual microalgal biomass and characterized using SEM, EDX, FT-IR, and XRD. The characterization results from SEM and EDX confirmed the structural and elemental composition of bionanocatalyst with Ca and O as main elements. XRD revealed the crystalline nature of CaO with particle size of 17.83 nm. 86.5 ± 0.65% (w/w) FAME was obtained using the synthesized catalyst and was characterized using 1H NMR, 13C NMR and GC-MS. This study demonstrates the potential of Monoraphidium sp., optimized growth conditions and the significance of reusability of residual microalgal biomass as catalyst for sustainable biodiesel production, offering a promising solution for fuel security and biotechnology applications.

Abiotic Stress-Induced Chloroplast and Cytosolic Ca2+ Dynamics in the Green Alga Chlamydomonas reinhardtii

Calcium (Ca2+)-dependent signalling plays a well-characterised role in the perception and response mechanisms to environmental stimuli in plant cells. In the context of a constantly changing environment, it is fundamental to understand how crop yield and microalgal biomass productivity are affected by external factors. Ca2+ signalling is known to be important in different physiological processes in microalgae but many of these signal transduction pathways still need to be characterised. Here, compartment-specific Ca2+ dynamics were monitored in Chlamydomonas reinhardtii cells in response to environmental stressors, such as nutrient availability, osmotic stress, temperature fluctuations and carbon sensing. An in vivo single-cell imaging approach was adopted to directly visualise changes of Ca2+ concentrations at the level of specific subcellular compartments, using C. reinhardtii lines expressing a genetically encoded ratiometric Ca2+ indicator. Hyper-osmotic shock caused cytosolic and chloroplast Ca2+ elevations, whereas high temperature and inorganic carbon availability primarily induced Ca2+ transients in the chloroplast. In contrast, hypo-osmotic stress only induced Ca2+ elevations in the cytosol. The results herein reported show that in Chlamydomonas cells compartment-specific Ca2+ transients are closely related to specific external environmental stimuli, providing useful guidance for studying signal transduction mechanisms exploited by microalgae to respond to specific natural conditions.

Effect of salinity on nitrogen removal performance, enzymatic activity and metabolic pathway of Chlorella pyrenoidosa treating aquaculture wastewater

The nitrogen removal performance, enzymatic activity, antioxidant response and metabolic pathway of Chlorella pyrenoidosa (C. pyrenoidosa) under different salinities have been investigated during the treatment of aquaculture wastewater. The growth, chlorophyll content and photosynthetic activity of C. pyrenoidosa were negatively correlated with the salinity from 1% to 3%. The removal performance of chemical oxygen demand (COD) and nitrogen compounds for C. pyrenoidosa decreased with the increase of salinity from 1% to 3%, which was due to the decrease of their corresponding metabolism enzymatic activities. The equilibrium between the reactive oxygen species production and antioxidant defensive system in C. pyrenoidosa was destroyed under high salinity stress and then caused an irreversible damage, which decreased the nitrogen assimilation of C. pyrenoidosa. The metabolic pathway of C. pyrenoidosa under 3% salinity had some obvious variation by comparison with 1% salinity, which led to the discrepancy in the microalgae activity and nitrogen transformation performance. Additionally, high salinity could inhibit the expression of gene associated with the chlorophyll synthesis and damaged the photosystem II reaction center. This study can provide an insight into the effect of salinity on the nitrogen removal from aquaculture wastewater by microalgae.

Genome-scale metabolic modelling reveals interactions and key roles of symbiont clades in a sponge holobiont

Sponges harbour complex microbiomes and as ancient metazoans and important ecosystem players are emerging as powerful models to understand the evolution and ecology of symbiotic interactions. Metagenomic studies have previously described the functional features of sponge symbionts, however, little is known about the metabolic interactions and processes that occur under different environmental conditions. To address this issue, we construct here constraint-based, genome-scale metabolic networks for the microbiome of the sponge Stylissa sp. Our models define the importance of sponge-derived nutrients for microbiome stability and discover how different organic inputs can result in net heterotrophy or autotrophy of the symbiont community. The analysis further reveals the key role that a newly discovered bacterial taxon has in cross-feeding activities and how it dynamically adjusts with nutrient inputs. Our study reveals insights into the functioning of a sponge microbiome and provides a framework to further explore and define metabolic interactions in holobionts.

Microalgae for bioremediation: advances, challenges, and public perception on genetic engineering

The increase in the global population and industrial activities has led to an extensive use of water, the release of wastewater, and overall contamination of the environment. To address these issues, efficient treatment methods have been developed to decrease wastewater nutrient content and contaminants. Microalgae are a promising tool as a sustainable alternative to traditional wastewater treatment. Furthermore, the biomass obtained from the wastewater treatment can be used in different applications, having a positive economic impact. This review describes the potential of microalgae as a biological wastewater remediation tool, including the use of genetically engineered strains. Their current industrial utilization and their untapped commercial potential in terms of bioremediation are also examined. Finally, this work discusses how microalgal biotechnology is perceived by the public and governments, analyses the potential risks of microalgae to the environment, and examines standard procedures that can be implemented for the safe biocontainment of large-scale microalgae cultures.

Tire microplastic particles and warming inhibit physiological functions of the toxic microalga Alexandrium pacificum

Previous studies have confirmed that the tire microplastic particles (TMPs) have a variety of toxic biological effects. However, the potential toxic mechanisms of TMPs remain to be elucidated, especially in the interaction between particle behavior and seawater warming. In this study, we investigated the effects of three different concentrations of TMPs suspensions (0 mg/L, 1 mg/L, and 500 mg/L) on Alexandrium pacificum in both the presence and absence of warming. Our results revealed significant differences in toxicity among different concentrations of TMPs towards A. pacificum, i.e., low concentrations promoting but high concentrations inhibiting, furthermore, warming exacerbated these toxicological responses. Specifically, under elevated temperature, high concentrations TMPs could inhibit photosynthetic pigment and chlorophyll fluorescence parameter, as well as the nutrient absorption, and induced oxidative stress. Furthermore, TMPs could adsorb onto microalgae surfaces and thus, forming heterogeneous aggregates through agglomeration with extracellular secretions. This is strongly correlated with biomarker response. Overall, these findings highlight the influence of warming on the toxicity of TMPs and provide valuable data for risk assessment.

A cyclical marker system enables indefinite series of oligonucleotide-directed gene editing in Chlamydomonas reinhardtii

CRISPR/Cas9 gene editing in the model green alga Chlamydomonas reinhardtii relies on the use of selective marker genes to enrich for nonselectable target mutations. This becomes challenging when many sequential modifications are required in a single-cell line, as useful markers are limited. Here, we demonstrate a cyclical selection process which only requires a single marker gene to identify an almost infinite sequential series of CRISPR-based target gene modifications. We used the NIA1 (Nit1, NR; nitrate reductase) gene as the selectable marker in this study. In the forward stage of the cycle, a stop codon was engineered into the NIA1 gene at the CRISPR target location. Cells retaining the wild-type NIA1 gene were killed by chlorate, while NIA1 knockout mutants survived. In the reverse phase of the cycle, the stop codon engineered into the NIA1 gene during the forward phase was edited back to the wild-type sequence. Using nitrate as the sole nitrogen source, only the reverted wild-type cells survived. By using CRISPR to specifically deactivate and reactivate the NIA1 gene, a marker system was established that flipped back and forth between chlorate- and auxotrophic (nitrate)-based selection. This provided a scarless cyclical marker system that enabled an indefinite series of CRISPR edits in other, nonselectable genes. We demonstrate that this "Sequential CRISPR via Recycling Endogenous Auxotrophic Markers (SCREAM)" technology enables an essentially limitless series of genetic modifications to be introduced into a single-cell lineage of C. reinhardtii in a fast and efficient manner to complete complex genetic engineering.

Silicon might mitigate nickel toxicity in maize roots via chelation, detoxification, and membrane transport

Nickel is an essential micronutrient for plant growth and development. However, in excessive amounts caused by accidental pollution of soils, this heavy metal is toxic to plants. Although silicon is a non-essential nutrient, it accumulates in most monocots, particularly the vital crop maize (corn, Zea mays). In fact, this metalloid mineral can alleviate the toxicity of heavy metals, though the mechanism is not entirely clear yet. Herein, we measured proteome, gene expression, enzyme activities, and selected sugars to investigate such effect thoroughly. Deep proteomic analysis revealed a minor impact of 100 µM Ni, 2.5 mM Si, or their combination on roots in 12-day-old hydroponically grown maize seedlings upon 9 days of exposure. Nonetheless, we suggested plausible mechanisms of Si mitigation of excessive Ni: Chelation by metallothioneins and phytochelatins, detoxification by glycine betaine pathway, and restructuring of plasma membrane transporters. Higher activity of glutathione S-transferase confirmed its plausible involvement in reducing Ni toxicity in combined treatment. Accumulation of sucrose synthase and corresponding soluble sugars in Ni and combined treatment implied high energy requirements both during heavy metal stress and its mitigation. Expression analysis of genes coding a few differentially accumulated proteins failed to reveal concordant changes, indicating posttranscriptional regulation. Proposed mitigation mechanisms should be functionally validated in follow-up studies.

The Divergent Responses of Salinity Generalists to Hyposaline Stress Provide Insights Into the Colonisation of Freshwaters by Diatoms

Environmental transitions, such as the salinity divide separating marine and fresh waters, shape biodiversity over both shallow and deep timescales, opening up new niches and creating opportunities for accelerated speciation and adaptive radiation. Understanding the genetics of environmental adaptation is central to understanding how organisms colonise and subsequently diversify in new habitats. We used time-resolved transcriptomics to contrast the hyposalinity stress responses of two diatoms. Skeletonema marinoi has deep marine ancestry but has recently invaded brackish waters. Cyclotella cryptica has deep freshwater ancestry and can withstand a much broader salinity range. Skeletonema marinoi is less adept at mitigating even mild salinity stress compared to Cyclotella cryptica, which has distinct mechanisms for rapid mitigation of hyposaline stress and long-term growth in low salinity. We show that the cellular mechanisms underlying low salinity tolerance, which has allowed diversification across freshwater habitats worldwide, includes elements that are both conserved and variable across the diatom lineage. The balance between ancestral and lineage-specific environmental responses in phytoplankton have shaped marine-freshwater transitions on evolutionary timescales and, on contemporary timescales, will affect which lineages survive and adapt to changing ocean conditions.

Use of microalgal-fungal pellets for hydroponics effluent recycling and high-value biomass production

Hydroponic effluent (HE), enriched with inorganic nutrients, presents a viable, low-cost cultivation medium for microalgal biomass production and subsequent resource recovery. However, downstream processing, particularly biomass harvesting, remains a critical challenge for microalgal biorefineries. Therefore, the present study explored the potential of microalgal-fungal pellets (MAFP) in HE recycling for the production of biochemical-rich biomass. The optimized fungi-to-microalgae ratio (F:A) of 1:3 resulted in 100 % microalgal pelletization within 6 h. Surface characteristics suggested that metabolically active fungi with opposite charges facilitate microalgal pelletization. Further, MAFP exhibited a packed porous structure that was resilient to shear forces and had a high capacity for nutrient uptake. MAFP cultivation in HE demonstrated complete removal of ammonia-nitrogen (NH₃-N), phosphate (PO₄³⁻), and nitrate-nitrogen (NO₃⁻-N) within 7-9 days. The produced biomass was rich in biomolecules, including lipids (18.36 ± 0.12 % TS), protein (52.06 ± 2.1 % TS), and carbohydrates (28.95 ± 0.05 % TS). Besides, the high methane potential of MAFP (SMP ≈ 502.74 ± 19.1 mL CH4 g-1 VS, and TMP ≈ 817.68 ± 12.5 mL CH4 g-1 VS) indicated its suitability for biogas production. In essence, MAFP offers efficient HE recycling and biochemically rich biomass production, advancing towards a green and circular bioeconomy.

The effect of biofertilizers on nickel accumulation, nitrogen metabolism and amino acid profile of corn (Zea mays L.) exposed to nickel stress

The issue of heavy metal pollution such as nickel poses a significant environmental concern, exerting detrimental effects on the growth and viability of plant life. Plants have various mechanisms to effectively manage heavy metal stress, including the ability to modify their amino acid type and content. This adaptive response allows plants to mitigate the detrimental effects caused by excessive heavy metal accumulation. The aim of this study was to investigate the effect of biofertilizers on nickel accumulation, nitrogen metabolism and amino acid profile of corn (Zea mays L.) cv. 'PL438' exposed to Ni stress. After disinfecting and soaking in water for 24 h, corn seeds were primed with bacterial biofertilizers (T2: NPK + FZ), fungal biofertilizers (T3: Arbuscular mycorrhizal fungi (AMF) + Trichoderma (T)), or a combination of them (T4: NPK + FZ + AMF + T) and were cultured by the hydroponic method in completely controlled conditions. Then, they were simultaneously exposed to nickel chloride at various rates (0, 75, or 150 µM) at the three-leaf stage. They were harvested two weeks later and were subjected to the measurement of Ni content, nitrate and nitrite content, nitrate reductase activity, and amino acid profile by high-performance liquid chromatography. The results showed that the application of Ni at higher rates increased Ni, nitrate, and nitrite contents and nitrate reductase activity. The study of Ni accumulation and TF revealed that Ni accumulated in the roots to a greater extent than in the shoots and TF was < 1 in all treatments. The shoot amino acid profile showed that the treatment of Ni+2 increased som amino acids such as aspartic acid, asparagine, serine, histidine, and glycine versus the control, whereas T4 Ni+2 increased aspartic acid, glutamic acid, threonine and arginine. The change in amino acids in Ni-treated plants may play a key role in their adaptation to Ni stress. The findings indicate that biofertilizers played a crucial role in mitigating the negative impacts of Ni on corn plants through alterations in amino acid composition and decreased absorption and translocation of Ni.

Nitrate reduction to ammonium: a phylogenetic, physiological, and genetic aspects in Prokaryotes and eukaryotes

The microbe-mediated conversion of nitrate (NO3-) to ammonium (NH4+) in the nitrogen cycle has strong implications for soil health and crop productivity. The role of prokaryotes, eukaryotes and their phylogeny, physiology, and genetic regulations are essential for understanding the ecological significance of this empirical process. Several prokaryotes (bacteria and archaea), and a few eukaryotes (fungi and algae) are reported as NO3- reducers under certain conditions. This process involves enzymatic reactions which has been catalysed by nitrate reductases, nitrite reductases, and NH4+-assimilating enzymes. Earlier reports emphasised that single-cell prokaryotic or eukaryotic organisms are responsible for this process, which portrayed a prominent gap. Therefore, this study revisits the similarities and uniqueness of mechanism behind NO3- -reduction to NH4+ in both prokaryotes and eukaryotes. Moreover, phylogenetic, physiological, and genetic regulation also shed light on the evolutionary connections between two systems which could help us to better explain the NO3--reduction mechanisms over time. Reports also revealed that certain transcription factors like NtrC/NtrB and Nit2 have shown a major role in coordinating the expression of NO3- assimilation genes in response to NO3- availability. Overall, this review provides a comprehensive information about the complex fermentative and respiratory dissimilatory nitrate reduction to ammonium (DNRA) processes. Uncovering the complexity of this process across various organisms may further give insight into sustainable nitrogen management practices and might contribute to addressing global environmental challenges.

Investigating cultivation strategies for enhancing protein content in Auxenochlorella pyrenoidosa FACHB-5

This study investigated the influence of yeast extract addition, carbon source, and photoperiod on the growth dynamics of Auxenochlorella pyrenoidosa FACHB-5. Employing response surface methodology, the culture strategy was optimized, resulting in the following optimal conditions: yeast extract addition at 0.75 g L-1, glucose concentration of 0.83 g L-1, and a photoperiod set at Light: Dark = 18 h: 6 h. Under these conditions, the biomass reached 1.76 g L-1 with a protein content of 750.00 g L-1, containing 40 % of essential amino acids, representing a 1.52-fold increase. Proteomic analysis revealed that the targeted cultivation strategy up-regulated genes involved in microalgal protein synthesis. The combined effect of yeast extract and glucose enhanced both the glutamine synthetase-glutamate synthetase mechanism and the free amino acid content.

The tiny giant of the sea, Ostreococcus's unique adaptations

Ostreococcus spp. are unicellular organisms with one of the simplest cellular organizations. The sequencing of the genomes of different Ostreococcus species has reinforced this status since Ostreococcus tauri has one most compact nuclear genomes among eukaryotic organisms. Despite this, it has retained a number of genes, setting it apart from other organisms with similar small genomes. Ostreococcus spp. feature a substantial number of selenocysteine-containing proteins, which, due to their higher catalytic activity compared to their selenium-lacking counterparts, may require a reduced quantity of proteins. Notably, O. tauri encodes several ammonium transporter genes, that may provide it with a competitive edge for acquiring nitrogen (N). This characteristic makes it an intriguing model for studying the efficient use of N in eukaryotes. Under conditions of low N availability, O. tauri utilizes N from abundant proteins or amino acids, such as L-arginine, similar to higher plants. However, the presence of a nitric oxide synthase (L-arg substrate) sheds light on a new metabolic pathway for L-arg in algae. The metabolic adaptations of O. tauri to day and night cycles offer valuable insights into carbon and iron metabolic configuration. O. tauri has evolved novel strategies to optimize iron uptake, lacking the classic components of the iron absorption mechanism. Overall, the cellular and genetic characteristics of Ostreococcus contribute to its evolutionary success, making it an excellent model for studying the physiological and genetic aspects of how green algae have adapted to the marine environment. Furthermore, given its potential for lipid accumulation and its marine habitat, it may represent a promising avenue for third-generation biofuels.

The globins of cyanobacteria and green algae: An update

The globin superfamily of proteins is ancient and diverse. Regular assessments based on the increasing number of available genome sequences have elaborated on a complex evolutionary history. In this review, we present a summary of a decade of advances in characterising the globins of cyanobacteria and green algae. The focus is on haem-containing globins with an emphasis on recent experimental developments, which reinforce links to nitrogen metabolism and nitrosative stress response in addition to dioxygen management. Mention is made of globins that do not bind haem to provide an encompassing view of the superfamily and perspective on the field. It is reiterated that an effort toward phenotypical and in-vivo characterisation is needed to elucidate the many roles that these versatile proteins fulfil in oxygenic photosynthetic microbes. It is also proposed that globins from oxygenic organisms are promising proteins for applications in the biotechnology arena.

Microalgal-bacterial consortia for the treatment of livestock wastewater: Removal of pollutants, interaction mechanisms, influencing factors, and prospects for application

The livestock sector is responsible for a significant amount of wastewater globally. The microalgal-bacterial consortium (MBC) treatment has gained increasing attention as it is able to eliminate pollutants to yield value-added microalgal products. This review offers a critical discussion of the source of pollutants from livestock wastewater and the environmental impact of these pollutants. It also discusses the interactions between microalgae and bacteria in treatment systems and natural habitats in detail. The effects on MBC on the removal of various pollutants (conventional and emerging) are highlighted, focusing specifically on analysis of the removal mechanisms. Notably, the various influencing factors are classified into internal, external, and operating factors, and the mutual feedback relationships between them and the target (removal efficiency and biomass) have been thoroughly analysed. Finally, a wastewater recycling treatment model based on MBC is proposed for the construction of a green livestock farm, and the application value of various microalgal products has been analysed. The overall aim was to indicate that the use of MBC can provide cost-effective and eco-friendly approaches for the treatment of livestock wastewater, thereby advancing the path toward a promising microalgal-bacterial-based technology.

Synergistic regulation of hydrogen sulfide and nitric oxide on biochemical components, exopolysaccharides, and nitrogen metabolism in nickel stressed rice field cyanobacteria

The present study examined the regulatory mechanism of hydrogen sulfide (H2S) and nitric oxide (NO) in nickel (Ni) stressed cyanobacteria viz., Nostoc muscorum and Anabaena sp. by analyzing growth, photosynthetic pigments, biochemical components (protein and carbohydrate), exopolysaccharides (EPS), inorganic nitrogen content, and activity of enzymes comprised in nitrogen metabolism and Ni accumulation. The 1 µM Ni substantially diminished growth by 18% and 22% in N. muscorum and Anabaena sp. respectively, along with declining the pigment contents (Chl a/Car ratio and phycobiliproteins), and biochemical components. It also exerted negative impacts on inorganic uptake of nitrate and nitrite contents; nitrate reductase and nitrite reductase; and ammonium assimilating enzymes (glutamine synthetase, glutamate synthase, and glutamate dehydrogenase exhibited a reverse trend) activities. Nonetheless, the adverse impact of Ni can be mitigated through the exogenous supplementation of NaHS [sodium hydrosulfide (8 µM); H2S donor] and SNP [sodium nitroprusside (10 µM); NO donor] which showed substantial improvement on growth, pigments, nitrogen metabolism, and EPS layer and noticeably occurred as a consequence of a substantial reduction in Ni accumulation content which minimized the toxicity effects. The accumulation of Ni on both the cyanobacterial cell surface (EPS layer) are confirmed by the SEM-EDX analysis. Further, the addition of NO scavenger (PTIO; 20 µM) and inhibitor of NO (L-NAME; 100 µM); and H2S scavenger (HT; 20 µM) and H2S inhibitor (PAG; 50 µM) reversed the positive responses of H2S and NO and damages were more prominent under Ni stress thereby, suggesting the downstream signaling of H2S on NO-mediated alleviation. Thus, this study concludes the crosstalk mechanism of H2S and NO in the mitigation of Ni-induced toxicity in rice field cyanobacteria.

Redox regulation in primary nitrate response: Nitric oxide in the spotlight

Nitrogen (N) is the main macronutrient of plants that determines growth and productivity. Nitrate is the major source form of N in soils and its uptake and assimilatory pathway has been extensively studied. The early events that occur after the perception of nitrate is known as primary nitrate response (PNR). In this review, new findings on the redox signal that impacts PNR are discussed. We will focus on the novel role of Nitric Oxide (NO) as a signal molecule and the mechanisms that are involved to control NO homeostasis during PNR. Moreover, the role of Reactive Oxygen Species (ROS) and the possible interplay with NO in the PNR are discussed. The sources of NO during PNR will be analyzed as well as the regulation of its intracellular levels. Furthermore, we explored the relevance of the direct action of NO through the S-nitrosation of the transcription factor NLP7, one of the master regulators in the nitrate signaling cascade. This review gives rise to an interesting field with new actors to mark future research directions. This allows us to increase the knowledge of the physiological and molecular fine-tuned modulation during nitrate signaling processes in plants. The discussion of new experimental data will stimulate efforts to further refine our understanding of the redox regulation of nitrate signaling.

A high throughput array microhabitat platform reveals how light and nitrogen colimit the growth of algal cells

A mechanistic understanding of algal growth is essential for maintaining a sustainable environment in an era of climate change and population expansion. It is known that algal growth is tightly controlled by complex interactive physical and chemical conditions. Many mathematical models have been proposed to describe the relation of algal growth and environmental parameters, but experimental verification has been difficult due to the lack of tools to measure cell growth under precise physical and chemical conditions. As such, current models depend on the specific testing systems, and the fitted growth kinetic constants vary widely for the same organisms in the existing literature. Here, we present a microfluidic platform where both light intensity and nutrient gradients can be well controlled for algal cell growth studies. In particular, light shading is avoided, a common problem in macroscale assays. Our results revealed that light and nitrogen colimit the growth of algal cells, with each contributing a Monod growth kinetic term in a multiplicative model. We argue that the microfluidic platform can lead towards a general culture system independent algal growth model with systematic screening of many environmental parameters. Our work advances technology for algal cell growth studies and provides essential information for future bioreactor designs and ecological predictions.

Physiological and morphological plasticity in response to nitrogen availability of a yeast widely distributed in the open ocean

Yeasts are prevalent in the open ocean, yet we have limited understanding of their ecophysiological adaptations, including their response to nitrogen availability, which can have a major role in determining the ecological potential of other planktonic microbes. In this study, we characterized the nitrogen uptake capabilities and growth responses of marine-occurring yeasts. Yeast isolates from the North Atlantic Ocean were screened for growth on diverse nitrogen substrates, and across a concentration gradient of three environmentally relevant nitrogen substrates: nitrate, ammonium, and urea. Three strains grew with enriched nitrate while two did not, demonstrating that nitrate utilization is present but not universal in marine yeasts, consistent with existing knowledge of nonmarine yeast strains. Naganishia diffluens MBA_F0213 modified the key functional trait of cell size in response to nitrogen concentration, suggesting yeast cell morphology changes along chemical gradients in the marine environment. Meta-analysis of the reference DNA barcode in public databases revealed that the genus Naganishia has a global ocean distribution, strengthening the environmental applicability of the culture-based observations. This study provides novel quantitative understanding of the ecophysiological and morphological responses of marine-derived yeasts to variable nitrogen availability in vitro, providing insight into the functional ecology of yeasts within pelagic open ocean environments.

Effect of light intensity on nitrogen transformation, enzymatic activity, antioxidant system and transcriptional response of Chlorella pyrenoidosa during treating mariculture wastewater

The nitrogen transformation, enzymatic activity, antioxidant ability and transcriptional response of Chlorella pyrenoidosa (C. pyrenoidosa) treating mariculture wastewater were compared under different light intensities. The microalgal growth, chlorophyll synthesis and nitrogen removal ability of C. pyrenoidosa increased with the light intensity from 3000 to 7000 Lux, whereas they slightly decreased under 9000 and 11,000 Lux. The nitrogen metabolism enzymatic activities displayed obvious differences under different light intensities and affected the nitrogen transformation process. The reactive oxygen species (ROS) production increased with the increase of operational time, whereas it had distinct differences under different light intensities. The changes of antioxidant enzymatic activities were positively correlated with the ROS production. The transcriptional response of C. pyrenoidosa was in accordance with the variation of the photosynthesis, nitrogen assimilation and antioxidant system under different light intensities. This study provides theoretical basis and technical support to select suitable light intensity for algae treating mariculture wastewater.

Carbon and energy balance of biotechnological glycolate production from microalgae in a pre-industrial scale flat panel photobioreactor

Glycolate is produced by microalgae under photorespiratory conditions and has the potential for sustainable organic carbon production in biotechnology. This study explores the glycolate production balance in Chlamydomonas reinhardtii, using a custom-built 10-L flat panel bioreactor with sophisticated measurements of process factors such as nutrient supply, gassing, light absorption and mass balances. As a result, detailed information regarding carbon and energy balance is obtained to support techno-economic analyses. It is shown how nitrogen is a crucial element in the biotechnological process and monitoring nitrogen content is vital for optimum performance. Moreover, the suitable reactor design is advantageous to efficiently adjust the gas composition. The oxygen content has to be slightly above 30% to induce photorespiration while maintaining photosynthetic efficiency. The final volume productivity reached 27.7 mg of glycolate per litre per hour, thus, the total process capacity can be calculated to 13 tonnes of glycolate per hectare per annum. The exceptional volume productivity of both biomass and glycolate production is demonstrated, and consequently can achieve a yearly CO2 sequestration rate of 35 tonnes per hectare. Although the system shows such high productivity, there are still opportunities to enhance the achieved volume productivity and thus exploit the biotechnological potential of glycolate production from microalgae.

Diversified molecular adaptations of inorganic nitrogen assimilation and signaling machineries in plants

Plants evolved sophisticated machineries to monitor levels of external nitrogen supply, respond to nitrogen demand from different tissues and integrate this information for coordinating its assimilation. Although roles of inorganic nitrogen in orchestrating developments have been studied in model plants and crops, systematic understanding of the origin and evolution of its assimilation and signaling machineries remains largely unknown. We expanded taxon samplings of algae and early-diverging land plants, covering all main lineages of Archaeplastida, and reconstructed the evolutionary history of core components involved in inorganic nitrogen assimilation and signaling. Most components associated with inorganic nitrogen assimilation were derived from the ancestral Archaeplastida. Improvements of assimilation machineries by gene duplications and horizontal gene transfers were evident during plant terrestrialization. Clusterization of genes encoding nitrate assimilation proteins might be an adaptive strategy for algae to cope with changeable nitrate availability in different habitats. Green plants evolved complex nitrate signaling machinery that was stepwise improved by domains shuffling and regulation co-option. Our study highlights innovations in inorganic nitrogen assimilation and signaling machineries, ranging from molecular modifications of proteins to genomic rearrangements, which shaped developmental and metabolic adaptations of plants to changeable nutrient availability in environments.

Impact of mixed microalgal and bacterial species on organic micropollutants removal in photobioreactors under natural light

Single microalgae species are effective at the removal of various organic micropollutants (OMPs), however increased species diversity might enhance this removal. Sixteen OMPs were added to 2 continuous photobioreactors, one inoculated with Chlorella sorokiniana and the other with a microalgal-bacterial community, for 112 d under natural light. Three media were sequentially used in 3 Periods: I) synthetic sewage (d 0-28), II) 10x diluted anaerobically digested black water (AnBW) (d 28-94) and III) 5x diluted AnBW (d 94-112). Twelve OMPs were removed > 30 %, while 4 were < 10 % removed. Removal efficiencies were similar for 9 OMPs, yet the mixed community showed a 2-3 times higher removal capacity (µg OMP/g dry weight) than C. sorokiniana during Period II pseudo steady state. The removal decreased drastically in Period III due to overgrowth of filamentous green algae. This study shows for the first time how microbial community composition and abundance are key for OMPs removal.

Axenic green microalgae for the treatment of textile effluent and the production of biofuel: a promising sustainable approach

An integrated approach to nutrient recycling utilizing microalgae could provide feasible solutions for both environmental control and energy production. In this study, an axenic microalgae strain, Chlorella sorokiniana ASK25 was evaluated for its potential as a biofuel feedstock and textile wastewater (TWW) treatment. The microalgae isolate was grown on TWW supplemented with different proportions of standard BG-11 medium varying from 0 to 100% (v/v). The results showed that TWW supplemented with 20% (v/v) BG11 medium demonstrated promising results in terms of Chlorella sorokiniana ASK25 biomass (3.80 g L-1), lipid production (1.24 g L-1), nutrients (N/P, > 99%) and pollutant removal (chemical oxygen demand (COD), 99.05%). The COD level dropped by 90% after 4 days of cultivation, from 2,593.33 mg L-1 to 215 mg L-1; however, after day 6, the nitrogen (-NO3-1) and total phosphorus (TP) levels were reduced by more than 95%. The biomass-, total lipid- and carbohydrate- production, after 6 days of cultivation were 3.80 g L-1, 1.24 g L-1, and 1.09 g L-1, respectively, which were 2.15-, 2.95- and 3.30-fold higher than Chlorella sorokiniana ASK25 grown in standard BG-11 medium (control). In addition, as per the theoretical mass balances, 1 tonne biomass of Chlorella sorokiniana ASK25 might yield 294.5 kg of biodiesel and 135.7 kg of bioethanol. Palmitic acid, stearic acid, and oleic acid were the dominant fatty acids found in the Chlorella sorokiniana ASK25 lipid. This study illustrates the potential use of TWW as a microalgae feedstock with reduced nutrient supplementation (20% of TWW). Thus, it can be considered a promising feedstock for economical biofuel production.

Effects of phytohormone on Chlorella vulgaris grown in wastewater-flue gas: C/N/S fixation, wastewater treatment and metabolome analysis

Chlorella vulgaris (C. vulgaris) can provide the means to fix CO2 from complicated flue gas, treat wastewater and reach a sustainable production of petrochemical substitutes simultaneously. However, a prerequisite to achieving this goal is to promote C. vulgaris growth and improve the CO2-to-fatty acids conversion efficiency under different conditions of flue gas and wastewater. Thus, the addition of indole-3-acetic acid (IAA) in C. vulgaris cultivation was proposed. Results showed that C. vulgaris were more easily inhibited by 100 ppm NO and 200 ppm SO2 under low nitrogen (N) condition. NO and SO2 decreased the carbon (C) fixation; but increased N and sulfur (S) fixation. IAA adjusted the content of superoxide dismutase (SOD) and malondialdehyde (MDA), improved the expression of psbA, rbcL, and accD, attenuated the toxicity of NO and SO2 on C. vulgaris, and ultimately improved cell growth (2014.64-2458.16 mgdw·L-1) and restored CO2 fixation rate (170.98-220.92 mg CO2·L-1·d-1). Moreover, wastewater was found to have a high treatment efficiency because C. vulgaris grew well in all treatments, and the maximal removal rates of both N and phosphorus (P) reached 100%. Metabonomic analysis showed that IAA, "NO and SO2" were involved in the down-regulated and up-regulated expression of multiple metabolites, such as fatty acids, amino acids, and carbohydrates. IAA was beneficial for improving lipid accumulation with 24584.21-27634.23 μg g-1, especially monounsaturated fatty acids (MUFAs) dominated by 16-18 C fatty acids, in C. vulgaris cells. It was concluded that IAA enhanced the CO2 fixation, fatty acids production of C. vulgaris and its nutrients removal rate.

Nitrogen and phosphorus stress as a tool to induce lipid production in microalgae

Microalgae, capable of accumulating large amounts of lipids, are of great value for biodiesel production. The high cost of such production stimulates the search for cultivation conditions that ensure their highest productivity. Reducing the content of nitrogen and phosphorus in the culture medium is widely used to change the content and productivity of lipids in microalgae. Achieving the right balance between maximum growth and maximum lipid content and productivity is the primary goal of many experimental works to ensure cost-effective biodiesel production from microalgae. The content of nitrogen and phosphorus in nutrient media for algal cultivation after converted to nitrogen (-N) and phosphorus (-P) lies in an extensive range: from 0.007 g L- 1 to 0.417 g L- 1 and from 0.0003 g L- 1 to 0.227 g L- 1 and N:P ratio from 0.12:1 to 823.33:1. When studying nutritional stress in microalgae, no single approach is used to determine the experimental concentrations of nitrogen and phosphorus. This precludes the possibility of correct interpretation of the data and may lead to erroneous conclusions. This work results from the systematisation of information on using nitrogen and phosphorus restriction to increase the lipid productivity of microalgae of different taxonomic and ecological groups to identify future research directions. The results of 301 experiments were included in the analysis using the principal components method. The investigation considered various divisions and classes: Cyanobacteria, Rhodophyta, Dinophyta, Haptophyta, Cryptophyta, Heterokontophyta/Ochrophyta (Bacillariophyceae, Eustigmatophyceae, Xanthophyceae), Chlorophyta, and also the ratio N:P, the time of the experiment, the light intensity during cultivation. Based on the concentrations of nitrogen and phosphorus existing in various nutrient media, a general scheme for designating the supply of nutrient media for nitrogen (as NO3- or NH4+, N g L- 1) and phosphorus (as РO4-, P g L- 1) has been proposed: replete -N (˃0.4 g L- 1), moderate -N (0.4-0.2), moderate N-limitation (0.19-0.1), strong N-limitation (˂0.1), without nitrogen (0), replete -Р (˃0.2), moderate -P (0.2-0.02), moderate P-limitation (0.019-0.01), strong P-limitation (˂0.01), without phosphorus (0).

Glutamate dehydrogenase in "Liverworld"-A study in selected species to explore a key enzyme of plant primary metabolism in Marchantiophyta

In plants, glutamate dehydrogenase (GDH) is an ubiquitous enzyme that catalyzes the reversible amination of 2-oxoglutarate in glutamate. It contributes to both the amino acid homeostasis and the management of intracellular ammonium, and it is regarded as a key player at the junction of carbon and nitrogen assimilation pathways. To date, information about the GDH of terrestrial plants refers to a very few species only. We focused on selected species belonging to the division Marchantiophyta, providing the first panoramic overview of biochemical and functional features of GDH in liverworts. Native electrophoretic analyses showed an isoenzymatic profile less complex than what was reported for Arabidposis thaliana and other angiosperms: the presence of a single isoform corresponding to an α-homohexamer, differently prone to thermal inactivation on a species- and organ-basis, was found. Sequence analysis conducted on amino acid sequences confirmed a high similarity of GDH in modern liverworts with the GDH2 protein of A. thaliana, strengthening the hypothesis that the duplication event that gave origin to GDH1-homolog gene from GDH2 occurred after the evolutionary bifurcation that separated bryophytes and tracheophytes. Experiments conducted on Marchantia polymorpha and Calypogeia fissa grown in vitro and compared to A. thaliana demonstrated through in gel activity detection and monodimensional Western Blot that the aminating activity of GDH resulted in strongly enhanced responses to ammonium excess in liverworts as well, even if at a different extent compared to Arabidopsis and other vascular species. The comparative analysis by bi-dimensional Western Blot suggested that the regulation of the enzyme could be, at least partially, untied from the protein post-translational pattern. Finally, immuno-electron microscopy revealed that the GDH enzyme localizes at the subcellular level in both mitochondria and chloroplasts of parenchyma and is specifically associated to the endomembrane system in liverworts.

Horizontally Acquired Nitrate Reductase Realized Kleptoplastic Photoautotrophy of Rapaza viridis

While photoautotrophic organisms utilize inorganic nitrogen as the nitrogen source, heterotrophic organisms utilize organic nitrogen and thus do not generally have an inorganic nitrogen assimilation pathway. Here, we focused on the nitrogen metabolism of Rapaza viridis, a unicellular eukaryote exhibiting kleptoplasty. Although belonging to the lineage of essentially heterotrophic flagellates, R. viridis exploits the photosynthetic products of the kleptoplasts and was therefore suspected to potentially utilize inorganic nitrogen. From the transcriptome data of R. viridis, we identified gene RvNaRL, which had sequence similarity to genes encoding nitrate reductases in plants. Phylogenetic analysis revealed that RvNaRL was acquired by a horizontal gene transfer event. To verify the function of the protein product RvNaRL, we established RNAi-mediated knock-down and CRISPR-Cas9-mediated knock-out experiments for the first time in R. viridis and applied them to this gene. The RvNaRL knock-down and knock-out cells exhibited significant growth only when ammonium was supplied. However, in contrast to the wild-type cells, no substantial growth was observed when nitrate was supplied. Such arrested growth in the absence of ammonium was attributed to impaired amino acid synthesis due to the deficiency of nitrogen supply from the nitrate assimilation pathway; this in turn resulted in the accumulation of excess photosynthetic products in the form of cytosolic polysaccharide grains, as observed. These results indicate that RvNaRL is certainly involved in nitrate assimilation by R. viridis. Thus, we inferred that R. viridis achieved its advanced kleptoplasty for photoautotrophy, owing to the acquisition of nitrate assimilation via horizontal gene transfer.

Exploring the potential of Diplosphaera mucosa VSPA for the treatment of petroleum effluent with simultaneous lipid production

The discovery of unexplored, robust microalgal strains will assist in treating highly polluted industrial effluent, including petroleum effluent. In the current analysis, a newly isolated microalgal strain, Diplosphaera mucosa VSPA, was used to treat petroleum effluent in a lab-scale raceway bioreactor. Its treatment efficiency was compared with a well-known species, Chlorella pyrenoidosa. The D. mucosa VSPA strain proliferated in petroleum effluent at a high growth rate, with final biomass, and lipid concentrations reaching 6.93 g/L and 2.72 g/L, respectively. Treatment efficiency was calculated based on the final removal efficiency of ammonium nitrogen, phosphate phosphorus, and chemical oxygen demand, which was more than 90%. Control experiments suggested that the maximum removal of pollutants from petroleum effluent was due to microalgae growth. Some growth models, including the Gompertz, Logistic, Stannard, Richard, and Schnute, were used to simulate the experimental data, verifying the results. Good fitting of all models was obtained, with the R2 value reaching more than 0.90. The development of a suitable model can help in decreasing the efforts required for the scale-up of the process.

Acclimation strategies of the green alga Chlorella vulgaris to different light regimes revealed by physiological and comparative proteomic analyses

Acclimation to different light regimes is at the basis of survival for photosynthetic organisms, regardless of their evolutionary origin. Previous research efforts largely focused on acclimation events occurring at the level of the photosynthetic apparatus and often highlighted species-specific mechanisms. Here, we investigated the consequences of acclimation to different irradiances in Chlorella vulgaris, a green alga that is one of the most promising species for industrial application, focusing on both photosynthetic and mitochondrial activities. Moreover, proteomic analysis of cells acclimated to high light (HL) or low light (LL) allowed identification of the main targets of acclimation in terms of differentially expressed proteins. The results obtained demonstrate photosynthetic adaptation to HL versus LL that was only partially consistent with previous findings in Chlamydomonas reinhardtii, a model organism for green algae, but in many cases similar to vascular plant acclimation events. Increased mitochondrial respiration measured in HL-acclimated cells mainly relied on alternative oxidative pathway dissipating the excessive reducing power produced due to enhanced carbon flow. Finally, proteins involved in cell metabolism, intracellular transport, gene expression, and signaling-including a heliorhodopsin homolog-were identified as strongly differentially expressed in HL versus LL, suggesting their key roles in acclimation to different light regimes.

Field assessment of yield and its contributing traits in cowpea treated with lower, intermediate, and higher doses of gamma rays and sodium azide

Across the globe, plant breeders of different organizations are working in collaboration to bring preferred traits to crops of economic importance. Among the traits, "high yielding potential" is the most important as it is directly associated with food security and nutrition, one of the sustainable development goals. The Food and Agriculture Organization acknowledges plant breeders' role and efforts in achieving local and global food security and nutrition. Recognizing the importance of pulses and increasing pressure on food security, the United Nations General Assembly declared 2016 the "International year of Pulses" owing to their preferred traits such as climate change resilience, wide adaptability, low agriculture input, and protein- and nutrient-rich crops. Keeping all these developments in consideration, we initiated an induced mutagenesis program by treating cowpea (Vigna unguiculata L. Walp.) with different doses of gamma rays and sodium azide aiming to enhance the yielding potential of an otherwise outstanding variety viz., Gomati VU-89 and Pusa-578. We noticed a substantial increase in mean values of agronomic traits in putative mutants raised from seeds treated with lower and intermediate doses of mutagens. Statistical analysis such as correlation, path, hierarchical clustering analysis (HCA), and principal component analysis (PCA) were used to assess the difference between mutagenized and control populations. A significant and positive correlation of yield with yield-attributing traits was recorded. However, among all the yield attributing traits, seeds per pod (SPP) depicted the maximum direct impact upon yield, and therefore, working on this trait may yield better results. A widely used PCA revealed 40.46% and 33.47% of the total variation for var. Gomati VU-89 and var. Pusa-578, respectively. Cluster analysis clustered treated and control populations into separate clusters with variable cluster sizes. Cluster V in the variety Gomati VU-89 and cluster V and VI in the variety Pusa 578 comprised of putative mutants were higher yielding and hence could be recommended for selection in future breeding programs. We expect to release such mutant lines for farmer cultivation in Northern parts of India depending on the performance of such high-yielding mutant lines at multilocations.

Systematic exploration of transcriptional responses of interspecies interaction between Karenia mikimotoi and Prorocentrum shikokuense

Karenia mikimotoi and Prorocentrum shikokuense (also identified as P. donghaiense Lu and P. obtusidens Schiller) are two important harmful algal species which often form blooms in the coasts of China. Studies have shown that the allelopathy of K. mikimotoi and P. shikokuense plays an important role in inter-algal competition, though the underlying mechanisms remain largely unclear. Here, we observed reciprocal inhibitory effects between K. mikimotoi and P. shikokuense under co-cultures. Based on the reference sequences, we isolated RNA sequencing reads of K. mikimotoi and P. shikokuense from co-culture metatranscriptome, respectively. We found the genes involved in photosynthesis, carbon fixation, energy metabolism, nutrients absorption and assimilation were significantly up-regulated in K. mikimotoi after co-cultured with P. shikokuense. However, genes involved in DNA replication and cell cycle were significantly down-regulated. These results suggested that co-culture with P. shikokuense stimulated cell metabolism and nutrients competition activity of K. mikimotoi, and inhibited cell cycle. In contrast, genes involved in energy metabolism, cell cycle and nutrients uptake and assimilation were dramatically down-regulated in P. shikokuense under co-culture with K. mikimotoi, indicating that K. mikimotoi could highly affect the cellular activity of P. shikokuense. In addition, the expression of PLA2G12 (Group XII secretory phospholipase A2) that can catalyze the accumulation of linoleic acid or linolenic acid, and nitrate reductase that may be involved in nitric oxide production were significantly increased in K. mikimotoi, suggesting that PLA2G12 and nitrate reductase may play important roles in the allelopathy of K. mikimotoi. Our findings shed new light on the interspecies competition between K. mikimotoi and P. shikokuense, and provide a novel strategy for studying interspecific competition in complex systems.

Microalgae systems - environmental agents for wastewater treatment and further potential biomass valorisation

Water is the most valuable resource on the planet. However, massive anthropogenic activities generate threatening levels of biological, organic, and inorganic pollutants that are not efficiently removed in conventional wastewater treatment systems. High levels of conventional pollutants (carbon, nitrogen, and phosphorus), emerging chemical contaminants such as antibiotics, and pathogens (namely antibiotic-resistant ones and related genes) jeopardize ecosystems and human health. Conventional wastewater treatment systems entail several environmental issues: (i) high energy consumption; (ii) high CO₂ emissions; and (iii) the use of chemicals or the generation of harmful by-products. Hence, the use of microalgal systems (entailing one or several microalgae species, and in consortium with bacteria) as environmental agents towards wastewater treatment has been seen as an environmentally friendly solution to remove conventional pollutants, antibiotics, coliforms and antibiotic resistance genes. In recent years, several authors have evaluated the use of microalgal systems for the treatment of different types of wastewater, such as agricultural, municipal, and industrial. Generally, microalgal systems can provide high removal efficiencies of: (i) conventional pollutants, up to 99%, 99%, and 90% of total nitrogen, total phosphorus, and/or organic carbon, respectively, through uptake mechanisms, and (ii) antibiotics frequently found in wastewaters, such as sulfamethoxazole, ciprofloxacin, trimethoprim and azithromycin at 86%, 65%, 42% and 93%, respectively, through the most desirable microalgal mechanism, biodegradation. Although pathogens removal by microalgal species is complex and very strain-specific, it is also possible to attain total coliform and Escherichia coli removal of 99.4% and 98.6%, respectively. However, microalgal systems' effectiveness strongly relies on biotic and abiotic conditions, thus the selection of operational conditions is critical. While the combination of selected species (microalgae and bacteria), ratios and inoculum concentration allow the efficient removal of conventional pollutants and generation of high amounts of biomass (that can be further converted into valuable products such as biofuels and biofertilisers), abiotic factors such as pH, hydraulic retention time, light intensity and CO₂/O₂ supply also have a crucial role in conventional pollutants and antibiotics removal, and wastewater disinfection. However, some rationale must be considered according to the purpose. While alkaline pH induces the hydrolysis of some antibiotics and the removal of faecal coliforms, it also decreases phosphates solubility and induces the formation of ammonium from ammonia. Also, while CO₂ supply increases the removal of E. coli and Pseudomonas aeruginosa, as well as the microalgal growth (and thus the conventional pollutants uptake), it decreases Enterococcus faecalis removal. Therefore, this review aims to provide a critical review of recent studies towards the application of microalgal systems for the efficient removal of conventional pollutants, antibiotics, and pathogens; discussing the feasibility, highlighting the advantages and challenges of the implementation of such process, and presenting current case-studies of different applications of microalgal systems.

Design and modelling of photobioreactor for the treatment of carpet and textile effluent using Diplosphaera mucosa VSPA

The current study investigated the potential of one less explored microalgae species, Diplosphaera mucosa VSPA, for treating carpet and textile effluent in a conventionally designed 10 L bubble column photobioreactor. To the best of our knowledge, this is the first study to evaluate COD (chemical oxygen demand) removal efficiency by microalgae in carpet effluent. To evaluate D. mucosa VSPA's potential, its growth and bioremediation efficacy were compared to those of a well-known strain, Chlorella pyrenoidosa. D. mucosa VSPA outperformed C. pyrenoidosa in both effluents, with the highest biomass concentration reaching 4.26 and 3.98 g/L in carpet and textile effluent, respectively. D. mucosa VSPA also remediated 94.0% of ammonium nitrogen, 71.6% of phosphate phosphorus, and 91.9% of chemical oxygen demand in carpet effluent, approximately 10% greater than that of C. pyrenoidosa. Both species also removed more than 65% of colour from both effluents, meeting the standard set by governing bodies. Microalgae growth and substrate removal patterns in the photobioreactor were simulated using photobiotreatment and the Gompertz model. Simulation results revealed that photobiotreatment was the better-fit model, concluded based on the coefficient of regression value and the second-order Akaike information criterion test. Modelling studies can assist in increasing the performance and scale-up of the photobioreactor.

Supplementary Information

The online version contains supplementary material available at 10.1007/s13205-023-03655-3.

Foliar spray of La2O3 nanoparticles regulates the growth, antioxidant parameters, and nitrogen metabolism of fragrant rice seedlings in wet and dry nurseries

Nanoparticles (NPs) have been widely used in agriculture, and lanthanum oxide nanoparticles (La2O3) NPs can regulate plant growth. La2O3 NPs treatment was hypothesized to affect the accumulation and distribution of substances in rice seedlings under wet and dry nursery conditions. The objective of the present study was to ascertain the effects of La2O3 NPs foliar spray on the morphology and physiology of fragrant rice seedlings under wet and dry nursery conditions. Seedlings of two fragrant rice cultivars, namely 'Xiangyaxiangzhan' and 'Yuxiangyouzhan,' were grown under wet and dry nursery conditions with La2O3 NPs treatments at three concentrations (CK, La2O3 NPs 0 mg L-1; T1, La2O3 NPs 20 mg L-1; and T2, La2O3 NPs 40 mg L-1). The results showed that the seedling-raising method was significantly associated with La2O3 NPs application (P < 0.05), affecting the leaf area of both cultivars. Changes in plant morphological parameters, such as dry weight and root-shoot ratio, were the reasons for the differences in cultivars in response to La2O3 NPs application. Changes were also observed in the plant morphological and physiological parameters of leaf area, specific leaf area, chlorophyll contents, antioxidant properties, and activities of nitrogen metabolism enzymes. The relationship between morphological and physiological processes in fragrant rice was investigated to test the hypothesis. In both wet and dry nursery methods, the T2 concentration of La2O3 NPs was beneficial for rice seedlings and significantly increased their leaf area due to changes in morphological and physiological parameters. Therefore, the results of this study provide a theoretical basis for expanding the research on La2O3 NPs application in rice, as well as relevant references for strengthening rice seedlings in the nursery, which has a positive effect on the grain yield improvement in fragrant rice.

Site-specific gene knock-in and bacterial phytase gene expression in Chlamydomonas reinhardtii via Cas9 RNP-mediated HDR

In the present study, we applied the HDR (homology-directed DNA repair) CRISPR-Cas9-mediated knock-in system to accurately insert an optimized foreign bacterial phytase gene at a specific site of the nitrate reductase (NR) gene (exon 2) to achieve homologous recombination with the stability of the transgene and reduce insertion site effects or gene silencing. To this end, we successfully knocked-in the targeted NR gene of Chlamydomonas reinhardtii using the bacterial phytase gene cassette through direct delivery of the CRISPR/Cas9 system as the ribonucleoprotein (RNP) complex consisting of Cas9 protein and the specific single guide RNAs (sgRNAs). The NR insertion site editing was confirmed by PCR and sequencing of the transgene positive clones. Moreover, 24 clones with correct editing were obtained, where the phytase gene cassette was located in exon 2 of the NR gene, and the editing efficiency was determined to be 14.81%. Additionally, site-specific gene expression was analyzed and confirmed using RT-qPCR. Cultivation of the positive knocked-in colonies on the selective media during 10 generations indicated the stability of the correct editing without gene silencing or negative insertion site effects. Our results demonstrated that CRISPR-Cas9-mediated knock-in could be applied for nuclear expression of the heterologous gene of interest, and also confirmed its efficacy as an effective tool for site-specific gene knock-in, avoiding nuclear positional effects and gene silencing in C. reinhardtii. These findings could also provide a new perspective on the advantageous application of RNP-CRISPR/Cas9 gene-editing to accelerate the commercial production of complex recombinant proteins in the food-grade organism "C. reinhardtii".

Daphnia magna as biological harvesters for green microalgae grown on recirculated aquaculture system effluents

The sustainability of recycling aquaculture systems (RAS) is challenged by nutrient discharges, which cause water eutrophication. Efficient treatments for RAS effluents are needed to mitigate its environmental impacts. Microalgae assimilate nutrients and dissolved carbon into microbial biomass with value as feed or food ingredient. However, they are difficult to harvest efficiently. Daphnia magna is an efficient filter feeder that grazes on microalgae at high rates and serves as valuable fish feed. Combining nutrient removal by microalgae and biomass harvesting by D. magna could be a cost-effective solution for wastewater valorization. Nutrient removal from unsterilized aquaculture wastewater was evaluated using the microalgae species Chlorella vulgaris, Scenedesmus dimorphus, and Haematococcus pluvialis. The first two algae were subsequently harvested using D. magna as a grazer, while H. pluvialis failed to grow stably. All phosphorus was removed, while only 50-70 % nitrogen was recovered, indicating phosphorus limitation. Shortening the hydraulic retention time (HRT) or phosphorus dosing resulted in increased nitrogen removal. C. vulgaris cultivation was unstable at 3 days HRT or when supplied with extra phosphorus at 5 days HRT. D. magna grew on produced algae accumulating protein at 20-30 % of dry weight, with an amino acid profile favorable for use as high value fish feed. Thus, this study demonstrates the application of a two steps multitrophic process to assimilate residual nutrients into live feeds suitable for fish.

Assessing the algal population dynamics using multiple machine learning approaches: Application to Macao reservoirs

The quality of reservoir water is important to the health and wellbeing of human and animals. Eutrophication is one of the most serious problems threatening the safety of reservoir water resource. Machine learning (ML) approaches are effective tools to understand and evaluate various environmental processes of concern, such as eutrophication. However, limited studies have compared the performances of different ML models to reveal algal dynamics using time-series data of redundant variables. In this study, the water quality data from two reservoirs in Macao were analyzed by adopting various ML approaches, including stepwise multiple linear regression (LR), principal component (PC)-LR, PC-artificial neuron network (ANN) and genetic algorithm (GA)-ANN-connective weight (CW) models. The influence of water quality parameters on algal growth and proliferation in two reservoirs was systematically investigated. The GA-ANN-CW model demonstrated the best performance in reducing the size of data and interpreting the algal population dynamics data, which displayed higher R-squared, lower mean absolute percentage error and lower root mean squared error values. Moreover, the variable contribution based on ML approaches suggest that water quality parameters, such as silica, phosphorus, nitrogen, and suspended solid have a direct impact on algal metabolisms in two reservoirs' water systems. This study can expand our capacity in adopting ML models in predicting algal population dynamics based on time-series data of redundant variables.