Global Goat! Is the Expanding Goat Population an Important Reservoir of Cryptosporidium?

Genomic advancements in goat breeding: enhancing productivity, disease resistance, and sustainability in India's rural economy

Goats are vital to the rural economy of India, contributing significantly to livelihoods, nutrition, and agricultural sustainability. With a population of 148.88 million, India holds the world's largest goat population, comprising 41 recognized indigenous breeds. These goats provide milk, meat, and fiber, particularly in marginal environments. The genomic advancements in goat research have revolutionized the understanding of genetic diversity, adaptation, and trait improvement. Whole-genome sequencing (WGS), single nucleotide polymorphism (SNP) arrays and transcriptomics have unveiled genetic markers associated with production, disease resistance, and reproductive traits. Genomic tools such as the Illumina Goat SNP50K BeadChip and high-throughput sequencing technologies have facilitated the identification of selection signatures and quantitative trait loci (QTL), influencing economically important traits like milk yield, meat quality, and prolificacy. Notably, genes such as DGAT1, GHR, BMPR1B, and HSP70 have been linked to production efficiency, reproductive performance, and climate resilience. Genome-wide association studies (GWAS) and genomic selection (GS) have enabled precision breeding, enhancing genetic gains and reducing inbreeding risks. The application of RNA sequencing has provided insights into gene expression patterns governing lactation, growth, and reproductive efficiency. Epigenomic studies, focusing on DNA methylation and histone modifications, have highlighted regulatory mechanisms underpinning prolificacy and muscle development. Conservation genomics has played a pivotal role in safeguarding native breeds by assessing genetic diversity and mitigating inbreeding depression. Indicine goat breeds, such as Jamunapari, Beetal, Barbari, and Black Bengal, exhibit unique genetic adaptations to diverse agro-climatic conditions, emphasizing the need for their conservation. Emerging technologies, including CRISPR-Cas9 gene editing, hold promise for precision breeding to enhance productivity and disease resistance. Integrating genomics with artificial intelligence (AI) and big data analytics is poised to revolutionize goat breeding and management. Future efforts should focus on expanding genomic databases, developing breed-specific reference genomes, and promoting genomic literacy among farmers to ensure sustainable goat production and improve rural livelihoods in India.

Climate resilience in goats: a comprehensive review of the genetic basis for adaptation to varied climatic conditions

The sustainability of livestock systems is widely acknowledged to be threatened by climate change on a worldwide scale. There are worries about the effects this phenomenon may have on the productivity and performance of native livestock species due to its influence on environmental stresses, such as the frequency and severity of unfavorable weather occurrences and the ongoing changes in the agro-ecological landscape. Among the most climatically tolerant livestock animals, goats can survive in a range of environments, from deserts to alpine areas. The domestic goat has undergone significant phenotypic changes in terms of shape, behavior, physiological adaptation, reproduction, and production over their evolutionary journey. It will be possible to better understand the genetic mechanisms underlying successful domestication and the practical breeding strategies leading to the improvement in productivity and resilience to environmental challenges by identifying the genes underlying these modifications. This review explores current knowledge on goat adaptation strategies, emphasizing gene expression patterns, epigenetic modifications, and whole-genome selection signatures. It examines how these molecular mechanisms enable goats to endure heat stress, hypoxia, and other environmental challenges. Furthermore, the review highlights the potential of epigenetic markers and selection signatures in developing climate-resilient goat breeds through marker-assisted selection and genome editing, offering actionable insights into sustainable goat production in the context of global climate change.

Global prevalence of Eimeria species in goats: a systematic review and meta-analysis

Background

Coccidiosis is a protozoal disease caused by Eimeria species, the main symptom of which is diarrhea. Eimeria spp. infection can cause weight loss and ill-thrift in goats, and in severe cases, it can lead to mortality in kids, resulting in economic losses for the goat industry. This study aimed to determine the global prevalence of Eimeria spp. in goats and to identify the possible predictors of heterogeneity among selected studies.

Methods

Data were retrieved from five databases of major global importance (PubMed, Web of Science, CAB Direct, Scopus, and Google Scholar), with 255 studies published between 1963 and 2022 being included. A random-effects model was used to calculate pooled prevalence estimates with 95% confidence intervals (CI), followed by subgroup meta-analysis and meta-regression analysis to identify factors contributing to high prevalence and explore sources of heterogeneity among studies.

Results

The estimated global prevalence of Eimeria spp. in goats was 62.9% (95% CI: 58.6-67.2). Our results indicated high inter-study variability (inconsistency index (I2) = 99.7%, p < 0.01). Among the variables analyzed, regions and quality of studies were the most significant predictors of heterogeneity. According to the region-based subgroup meta-analysis, North America had the highest estimated prevalence of Eimeria spp. (92.2, 95% CI: 82.7-98.2), followed by Europe (86.6, 95% CI: 79.8-92.3), while Asia had the lowest prevalence (52.0, 95% CI: 45.9-58.1). Most countries (n = 42/56) had an estimated prevalence above the overall pooled estimate (>62.9%). The subgroup of studies conducted in 2000 or later presented a lower prevalence of 59.6% (95% CI: 54.7-64.3). Studies with a score of 5-7 had a significantly higher prevalence (72.4, 95% CI: 66.2-78.2) than studies with low or medium scores (p < 0.01). The prevalence of Eimeria spp. in goats detected with conventional and molecular methods was 67.3% (95% CI: 47.0-84.7). Only 47% (119/255) of the studies provided details on identifying Eimeria at the species level. Overall, more than 26 Eimeria spp. have been identified in goats globally. Among these, the most frequently reported and pathogenic species were E. arloingi (115/119), E. ninakohlyakimovae (108/119), E. christenseni (94/119), and E. caprina (71/119). Other valid species that were reported less frequently include E. alijevi, E. hirci, E. caprovina, E. aspheronica and E. jolchijevi.

Conclusion

These findings suggest that the pathogenic Eimeria spp. are widespread in goats globally. Given the high prevalence and the extensive distribution of pathogenic Eimeria spp. in goats, it is recommended that integrated parasite management approaches be implemented for the effective control of coccidiosis in goats.

Evaluating prevalence, risk factors, and diagnostic techniques for Cryptosporidium infection in goats and surrounding water sources

Background

Cryptosporidium spp. are protozoan parasites that infect the gastrointestinal tract of various animals, including goats, and can also contaminate water sources, posing a significant public health risk. Detecting Cryptosporidium oocysts in fecal and water samples is critical for understanding the epidemiology of cryptosporidiosis and implementing appropriate control measures. Various staining methods, such as the Modified Ziehl-Neelsen (ZN) and Kenyon's Acid-Fast (KAF) staining techniques, are employed to identify these oocysts. This study compared the effectiveness of these two staining methods in detecting Cryptosporidium oocysts in goat feces and water samples across different geographic regions in district of Mardan, Khyber Pakhtunkhwa, Pakistan, and other factors such as genders, age groups, diarrheal statuses, and feeding regimes.

Methods

A total of 300 fecal and 300 water samples were collected from goats and water sources in four geographic regions: Tehsil Katlang, Tehsil Takhtbhai, Tehsil Mardan, and Tehsil Lundkhwarh. Samples were categorized based on gender, age group (<1 year, 1-2 years, and >2 years), diarrheal status, and feeding regime (stall feeding, grazing). The two staining methods, ZN and KAF staining, were employed to detect Cryptosporidium oocysts. The detection rates were calculated, and statistical analyses were performed to compare the effectiveness of the two methods across different categories.

Results

The overall detection rates of Cryptosporidium oocysts for fecal samples were 61.00% (95% CI: 55.22-66.55%) using the ZN method and 63.33% (95% CI: 57.60-68.79%) using KAF method, with no significant difference (p > 0.05). The highest detection rate was observed in Tehsil Katlang (70.66%) with the ZN method and in both Tehsil Katlang and Takhtbhai (66.66%) with the KAF staining method, having no significant difference (p > 0.05). Gender-wise analysis in fecal samples showed similar detection rates for males and females, with no significant differences. Age-wise, the highest detection rates were found in the youngest age group (<1 year) using the ZN method, and in the oldest age group (>2 years) using KAF staining, with no significant differences between age groups. Diarrheal status analysis indicated higher detection rates in diarrheic goats for both methods, with the highest detection rate in the diarrheic group of Tehsil Katlang (84.61%) using the ZN method. Feeding regime analysis showed no significant differences between stall-fed and grazing goats. For water samples, the detection rates of Cryptosporidium oocysts were significantly different between the two methods. The ZN technique had a significantly higher overall detection rate of 16.00% (95% CI: 12.03-20.64%) compared to 1.00% (95% CI: 0.20-2.89%) for KAF staining (p < 0.001). The performance of the two staining methods for the detection of Cryptosporidium oocysts in contaminated water samples from different geographic regions was also presented.

Conclusion

Both ZN and KAF staining methods are effective for detecting Cryptosporidium oocysts in goat feces. However, in water samples, the ZN method showed a significantly higher detection rate compared to KAF staining method, suggesting its suitability for environmental surveillance. These findings highlight the importance of integrating reliable diagnostic techniques with public health interventions to mitigate the zoonotic risks of cryptosporidiosis.

The comparative advantage of urban goat production

BACKGROUND

Urban agriculture significantly contributes to food security. The two primary components of urban agriculture are livestock production and horticulture. The goat, Capra hircus, is one of the commonly raised food animals. Goats can be used to generate income, produce milk, meat, skins, furs (hairs) and manure and provide various sociocultural and ecological services.

OBJECTIVES

This study evaluates the significance of urban goat production and recommends ways to lessen the adverse impacts of urban goat production.

METHODS

This report involved an in-depth interview with seven key informants in Adama and Addis Ababa cities.

RESULTS

Goats can thrive in limited urban open spaces, scavenge leftovers from homes and open markets and browse on open public land. Goats can be incorporated into urban agriculture, in so doing contributing to a circular economy. Goats can thrive on a limited supply of water and feed and require less care and space. Goat farming is used to mitigate the adverse impact of climate change. Goats are naturally active, which makes them better at avoiding traffic accidents. Goats can be used to control bush encroachment. Goat farming in cities improves land use efficiency and food security. Being friendly animals, goats can be utilized to play with kids, and they can be a basic piece of metropolitan ecotourism. However, goats can harm urban green spaces; therefore, to avoid issues of this kind, goat production must be zoned.

CONCLUSIONS

Urban goat farming could add a new dimension to urban food security. Extensive pieces of empirical evidence need to be generated to enhance the adoption of urban goat farming.

Genomic analysis uncovers novel candidate genes related to adaptation to tropical climates and milk production traits in native goats

BACKGROUND

Since domestication, both evolutionary forces and human selection have played crucial roles in producing adaptive and economic traits, resulting in animal breeds that have been selected for specific climates and different breeding goals. Pakistani goat breeds have acquired genomic adaptations to their native climate conditions, such as tropical and hot climates. In this study, using next-generation sequencing data, we aimed to assess the signatures of positive selection in three native Pakistani goats, known as milk production breeds, that have been well adapted to their local climate.

RESULTS

To explore the genomic relationship between studied goat populations and their population structure, whole genome sequence data from native goat populations in Pakistan (n = 26) was merged with available worldwide goat genomic data (n = 184), resulting in a total dataset of 210 individuals. The results showed a high genetic correlation between Pakistani goats and samples from North-East Asia. Across all populations analyzed, a higher linkage disequilibrium (LD) level (- 0.59) was found in the Pakistani goat group at a genomic distance of 1 Kb. Our findings from admixture analysis (K = 5 and K = 6) showed no evidence of shared genomic ancestry between Pakistani goats and other goat populations from Asia. The results from genomic selection analysis revealed several candidate genes related to adaptation to tropical/hot climates (such as; KITLG, HSPB9, HSP70, HSPA12B, and HSPA12B) and milk production related-traits (such as IGFBP3, LPL, LEPR, TSHR, and ACACA) in Pakistani native goat breeds.

CONCLUSIONS

The results from this study shed light on the structural variation in the DNA of the three native Pakistani goat breeds. Several candidate genes were discovered for adaptation to tropical/hot climates, immune responses, and milk production traits. The identified genes could be exploited in goat breeding programs to select efficient breeds for tropical/hot climate regions.

Risk Factor Analysis and Genetic Parameter Estimation for Pre-Weaning Mortality Traits in Boer, Spanish, and Crossbred Goat Kids

The objectives of this study were to evaluate fixed risk factors associated with PWM and to estimate genetic parameters for PWM. A total of 927 birth records from a mixed population of purebred and crossbred Boer and Spanish goats born between 2016 and 2023 at the International Goat Research Center (IGRC) were used for this study. Four binary traits were studied: D0-3 (death within 3 days after birth), D4-60 (death between 4 and 60 days), D61-90 (death between 61 and 90 days), and D0-90 (death within 90 days). Logistic regression models were used to evaluate the risk factors associated with PWM traits. Bayesian threshold models and Gibbs sampling were used to estimate the genetic parameters. Birth weight, season, litter size, sex, dam age, breed, and heterosis were found to be significantly associated with at least one of the PWM traits. Heritability estimates were 0.263, 0.124, 0.080, and 0.207, for D0-3, D4-60, D61-90, and D0-90, respectively. The genetic correlations between the studied traits ranged from 0.892 (D0-3 and D0-90) to 0.999 (D0-3 and D61-90). These results suggest that PWM in goats is influenced by both non-genetic and genetic factors and can be reduced by management, genetic selection, and crossbreeding approaches.

Prevalence of Cryptosporidium spp. in Sheep and Goats in Jiangsu, China

Sheep and goats serve as crucial hosts for Cryptosporidium spp. and are primarily responsible for its transmission via the fecal-oral route. This can result in symptoms such as lamb weight loss, diarrhea, and even fatalities, leading to significant economic losses. Currently, there is a lack of scholarly research investigating the prevalence of Cryptosporidium spp. infection in sheep and goats specifically within Jiangsu province. This study collected fecal samples from sheep and goats, extracted their DNA, amplified target bands using nested PCR, sequenced the DNA, constructed a phylogenetic tree, and identified the genetic genotype. In total, 3 positive samples were identified out of 398 samples. Furthermore, the gene sequences of these samples exhibited significant homology with C. xiaoi in GenBank. The phylogenetic analysis revealed that the Cryptosporidium spp. parasites under investigation are phylogenetically related to C. xiaoi. Conducting epidemiological investigations and accurately identifying the species of Cryptosporidium spp. is of utmost importance not only for the mutton sheep farming industry in Jiangsu but also for the proactive safeguarding of human health.

Detection and Molecular Diversity of Cryptosporidium spp. and Giardia duodenalis in the Endangered Iberian Lynx (Lynx pardinus), Spain

Cryptosporidium spp. and Giardia duodenalis are the main non-viral causes of diarrhoea in humans and domestic animals globally. Comparatively, much less information is currently available in free-ranging carnivore species in general and in the endangered Iberian lynx (Lynx pardinus) in particular. Cryptosporidium spp. and G. duodenalis were investigated with molecular (PCR and Sanger sequencing) methods in individual faecal DNA samples of free-ranging and captive Iberian lynxes from the main population nuclei in Spain. Overall, Cryptosporidium spp. and G. duodenalis were detected in 2.4% (6/251) and 27.9% (70/251) of the animals examined, respectively. Positive animals to at least one of them were detected in each of the analysed population nuclei. The analysis of partial ssu rRNA gene sequences revealed the presence of rodent-adapted C. alticolis (n = 1) and C. occultus (n = 1), leporid-adapted C. cuniculus (n = 2), and zoonotic C. parvum (n = 2) within Cryptosporidium, and zoonotic assemblages A (n = 5) and B (n = 3) within G. duodenalis. Subgenotyping analyses allowed for the identification of genotype VaA19 in C. cuniculus (gp60 locus) and sub-assemblages AI and BIII/BIV in G. duodenalis (gdh, bg, and tpi loci). This study represents the first molecular description of Cryptosporidium spp. and G. duodenalis in the Iberian lynx in Spain. The presence of rodent/leporid-adapted Cryptosporidium species in the surveyed animals suggests spurious infections associated to the Iberian lynx's diet. The Iberian lynx seems a suitable host for zoonotic genetic variants of Cryptosporidium (C. parvum) and G. duodenalis (assemblages A and B), although the potential risk of human transmission is regarded as limited due to light parasite burdens and suspected low excretion of infective (oo)cysts to the environment by infected animals. More research should be conducted to ascertain the true impact of these protozoan parasites in the health status of the endangered Iberian lynx.

Morphophysiological Responses of the Goat Mammary Gland to Water Scarcity in Arid and Semi-Arid Environments: Are They Enough to Generate Adaptation to New Climatic Challenges?

Due to climate change, diverse territories of the planet will suffer from water restrictions. Goats are perceived as the most resilient ruminants in this scenario. So, various studies have focused on describing how a lower water intake influences milk production, especially in breeds adapted to desert environments. In water-stress situations, goats lose up to 32% of their body weight (BW), the rate of passage is reduced, and the digestibility of the feed increases. When goats consume water again, the rumen prevents hemolysis and osmotic shock from occurring. Regarding milk production, the response varies depending on the breed and the level of water restriction, maintaining the milk volume or reducing it by up to 41%. Systemically, it decreases the urinary volume and glomerular filtration rate, increasing blood osmolality and the vasopressin (ADH) concentration. Studies are scarce regarding changes in blood flow to the mammary gland, but there would be a reduction in blood flow velocity of up to 40% without changing blood pressure. New studies must be undertaken to determine which breeds or crosses are the best adapted to changing environmental conditions and to improve our understanding of the changes that occur at the morphophysiological level of the caprine mammary gland.

Breeding and milking managements and Goat production constraints in Siltie Zone SNNPR, Ethiopia

The study was conducted in three agroecology of the Siltie Zone and assessed Breeding practice, Milking practice, and Goat Production Constraints in Siltie Zone SNNPR, Ethiopia. Multistage sampling techniques were followed during determining the study area where finally 384 respondents (128 from each agroecology) were selected to administer questionnaires. Primary data was collected through field observation, interviews, pretested questionnaires, and discussion with Focus Group Discussion. Collected data was organized into Microsoft Excel 2010 and analyzed using SPSS 21. The current study indicated respondents reared goats for multiple purposes, among which income generation (index = 0.38), followed by meat and breeding (index = 0.24) and milk (index = 0.19) ranked 1st, 2nd, and 3rd respectively. Phenotypically breeding bucks were selected primarily based on large body size, Body confirmation, and coat color whereas breeding does were selected based on Udder size, milk yield, litter size, and body confirmation. The current study shows that the Majority (59.90 %) of the bucks utilized for breeding purposes originated from respondents' flocks while government and neighbor-sourced contribute 22.40 % and 18.49 % respectively. Lowland goats were comparably potential milk yielders (0.655 ± 0.18) and larger in litter size (LS). As understood from this study, Feed shortage (index = 0.14), water shortage (index = 0.11), and land shortage (index = 0.10) were dry season and feed shortage (index = 0.26), land shortage (index = 0.19) and Productive Breeds (index = 0.07) were rainy season constraints distressing goat production in Siltie Zone. The current study points out that farmers should be aware of flock separation practice and its importance and supported by a Selection-based breeding program to handle only productive buck to improve goat productivity and reproductive performance. Furthermore facilitating access to improved forage, using hay and crop residue were options suggested to overcome feed shortage.

Molecular Diversity of Mycobacterium avium subsp. paratuberculosis in Four Dairy Goat Herds from Thuringia (Germany)

This study investigated the intra- and inter-herd diversity of Mycobacterium avium subsp. paratuberculosis (MAP) isolates from four goat herds in Thuringia (Germany) that were affected by paratuberculosis for several years. The main focus was on the characterization and distribution of genotypes among animals and the environment of goat herd 1. This study included 196 isolates from the feces of 121 infected goats, various tissues from 13 clinically diseased goats, 29 environmental samples from herd 1, and additionally, 22 isolates of different origin from herds 2 to 4. The isolates, sampled between 2018 and 2022, were genotyped using short-sequence-repeat (SSR) analysis, mycobacterial-interspersed repetitive units-variable-number tandem repeat (MIRU-VNTR) analysis, and a single nucleotide polymorphism (SNP)-based assay for phylogenetic grouping. All the isolates belonged to the MAP-C group. In herd 1, one predominant genotype was determined, while two other genotypes were identified very rarely and only in fecal and environmental samples. One of three further genotypes was found in each of herds 2 to 4. The assignment of genotypes to different phylogenetic clades suggested six different infection strains. The results indicated no epidemiological links between the examined herds. Based on the current MAP genotyping data from Germany, possible sources of infection are MAP-contaminated barns previously used by infected cattle and the purchase of sub-clinically infected goats.

Outbreak of severe diarrhea due to zoonotic Cryptosporidium parvum and C. xiaoi in goat kids in Chungcheongbuk-do, Korea

Severe diarrhea was reported in goat kids in Chungcheongbuk-do, Korea, from 2021 to 2023, and Cryptosporidium infection was suspected. To confirm the cause of this outbreak, fecal samples were collected from goat farms where diarrhea had been reported and analyzed for Cryptosporidium infection using a molecular assay. A total of 65 fecal samples, including 37 from goats with diarrhea and 28 from goats without diarrhea, were collected from six goat farms. Forty-eight of the goats were kids (<2 months) and 17 were adults (>1 year). Cryptosporidium was identified in 53.8% (35/65) of total samples. Overall, 86.5% (32/37) of the diarrheic fecal samples tested positive; however, Cryptosporidium was not detected in any fecal sample from non-diarrheic adult goats. Therefore, cryptosporidiosis was significantly associated with diarrhea in goat kids, and adult goats were not responsible for transmission of Cryptosporidium to them. Phylogenetic analysis and molecular characterization revealed two Cryptosporidium species, namely, C. parvum (n = 28) and C. xiaoi (n = 7). In the C. parvum-positive samples, gp60 gene analysis revealed three zoonotic subtypes-IIaA18G3R1, IIdA15G1, and IIdA16G1. To the best of our knowledge, this study is the first to identify C. parvum IIaA18G3R1 and IIdA16G1 in goats, as well as the first to identify C. xiaoi in goats in Korea. These results suggest that goat kids play an important role as reservoir hosts for different Cryptosporidium species and that continuous monitoring with biosecurity measures is necessary to control cryptosporidiosis outbreaks.

Cryptosporidium parvum gp60 subtypes in diarrheic lambs and goat kids from Israel

Cryptosporidium parvum is the second-most prevalent Cryptosporidium species that infects humans worldwide. In European countries, it is the most prevalent species in sheep, suggesting that these animals are a source of zoonotic infection. Preweaned lambs and goats are particularly susceptible to infection by the parasite and may suffer from severe diarrhea whilst excreting large quantities of infectious oocysts. Fifty fecal samples from preweaned lambs and goats with diarrhea from 35 farms across Israel, found to be Cryptosporidium-positive by microscopy, were tested by PCR and sequence analyses to determine the infective species and subtypes. Cryptosporidium parvum DNA was detected in most samples from both lambs and goats (46/50). Cryptosporidium xiaoi DNA was detected in three samples from kids, with co-infection detected in a single sample. Eleven different C. parvum subtypes were found, 10 in lambs and 5 in goats. All subtypes were from the IIa and IId subtype families, with subtypes IIdA20G1 and IIaA15G2R1 being the most prevalent and widespread. These subtypes were previously found in calves and humans in Israel and are considered the most prevalent C. parvum subtypes in small ruminants globally. These results underline the zoonotic potential of C. parvum from small ruminants and the high subtype diversity compared to previous reports from other Middle Eastern countries. In addition, this is the first report of C. xiaoi in Israel.

Apicomplexans in Goat: Prevalence of Neospora caninum, Toxoplasma gondii, Cryptosporidium spp., Eimeria spp. and Risk Factors in Farms from Ecuador

Neospora caninum, Toxoplasma gondii, Cryptosporidium and Eimeria cause severe impacts on the productivity of goat herds. The objectives of the present study were to establish the prevalence of these apicomplexans in goat farms from Ecuador; to evaluate a rapid test for Cryptosporidium diagnosis and to identify the risk factors associated with the infections. A questionnaire was designed to obtain information from 24 goat farms from Zapotillo, Garza Real, Cazaderos, Limones and Paletillas parishes in Ecuador. Blood (n = 388) and feces (n = 391) samples were collected. Indirect ELISA and standard parasitological assays were carried out to evaluate the seroprevalence of N. caninum and T. gondii and to detect oocysts of Cryptosporidium and Eimeria. The overall prevalence values of N. caninum and T. gondii were 12.11% and 18.20%, Cryptosporidium spp. and Eimeria spp. oocysts were detected in 10.49% and 89.51% of the total samples. A low correlation value was found between the results obtained by Ziehl-Nielsen and the rapid test. The multinomial logistic regression analysis revealed that vitamin supplementation, age of diarrhea, frequency of deworming, pasture area, presence of artiodactyls, domestic fowl, administration of sulfas, age group, body condition, abortions, type of pastures and the presence of cattle were risk factors according to the parasite species.

Whole-Genome Sequencing Reveals the Genomic Characteristics and Selection Signatures of Hainan Black Goat

Goats have become one of the most adaptive and important livestock species distributed in developing countries in recent years. The Hainan Black goat is a native goat breed of the Hainan region that is generally well-liked by the local population and is thus raised in large numbers. However, the genomic diversity and selective signals of the Hainan Black goat have not been clearly elucidated yet. Therefore, in this study, we performed whole-genome resequencing of 16 Hainan Black goats and compared the results with those of 71 goats of 6 other breeds from different geographic regions. Principal component analysis (PCA) and phylogenetic analysis identified seven lineages for all goats. Hainan Black goats showed the most similarity with Leizhou goats and the least similarity with Boer goats. Selective sweep analysis identified candidate genes associated with various functions, including immune resistance to disease (TNFAIP2 (TNF alpha induced protein 2) and EXOC3L4 (exocyst complex component 3 like 4)), melanin biosynthetic process (CDH15 (cadherin 15), ASIP (agouti signaling protein), and PARD3 (par-3 family cell polarity regulator)), and light sensitivity (CNGB3 (cyclic nucleotide gated channel subunit beta 3) and CNBD1 (cyclic nucleotide binding domain containing 1)), underlying strong selection signatures in Hainan Black goats. The melanin biosynthetic process, circadian entrainment, regulation of cyclic adenosine 3,5-monophosphate (cAMP)-mediated signaling, and the Rap-1 signaling pathway were significantly enriched in Hainan Black and Alashan Cashmere goats. This result may be important for understanding each trait. Selection signature analysis revealed candidate single nucleotide polymorphisms (SNPs) and genes correlated with the traits of Hainan Black goats. Collectively, our results provide valuable insights into the genetic basis of specific traits correlated with the Hainan island climate, artificial selection in certain local goat breeds, and the importance of protecting breed resources.

Cryptosporidium and Giardia infections in humans in Tigray, Northern Ethiopia: an unexpectedly low occurrence of anthropozoonotic transmission

Enteric protozoans Cryptosporidium spp. and Giardia duodenalis are among the leading causes of diarrhoea in children. These parasites have particular impact in low- and middle-income countries. In these countries, people often live in close contact with their animals, highlighting the potential role of zoonotic routes of transmission in disease spread. The occurrence and species/genotypes of Cryptosporidium and Giardia duodenalis infecting humans in Tigray, Ethiopia were investigated, along with the risk associated with infection. Stool samples from 249 asymptomatic people (4-80 years of age) in four rural districts in Tigray and 58 from symptomatic young children (1-33 months) attending health centres in Mekelle, Tigray's main city, were analysed for Cryptosporidium oocysts and Giardia cysts. Participants in the rural areas completed questionnaires regarding potential risk factors, with emphasis on livestock contact and sources of water. The occurrence of Cryptosporidium infection was 6% and 5% in people in the rural districts and young children from Mekelle, respectively; equivalent figures for Giardia infection were 29% and 14%. Molecular characterization of Cryptosporidium isolates revealed C. ubiquitum, subtype XIIa in a sample from rural districts, and C. hominis subtype IdA17 (1 sample) and IbA9G3 (2 samples) in infants from Mekelle with diarrhoea. For Giardia, Assemblage B predominated (22/25; 88%), but we also identified three samples with Assemblage A (AII). Our major finding was that, despite the close contact between people and livestock in our rural study sites, transmission of Cryptosporidium and Giardia between humans and their animals seems to be surprisingly uncommon. Our results are discussed in relation to other relevant studies, and also draws attention to the possibility that introduction of zoonotic species and/or subtypes, such as C. parvum, could have serious consequences for both human and animal health. As our study was conducted in Tigray, further investigation in different settings in Ethiopia could provide relevant information on transmission and zoonotic potential, and the potential for spread of zoonotic transmission. In addition, given the importance of these two parasites in causing diarrhoea in children, this information is vital for developing effective appropriate interventions against transmission that can be applied not only in Tigray or Ethiopia, but throughout Africa and beyond.

Geographical contrasts of Y-chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions

By their paternal transmission, Y-chromosomal haplotypes are sensitive markers of population history and male-mediated introgression. Previous studies identified biallelic single-nucleotide variants in the SRY, ZFY, DDX3Y genes, which in domestic goats identified four major Y-chromosomal haplotypes Y1A, Y1B, Y2A and Y2B with a marked geographic partitioning. Here, we extracted goat Y-chromosomal variants from whole-genome sequences of 386 domestic goats (75 breeds) and 7 wild goat species, which were generated by the VarGoats goat genome project. Phylogenetic analyses indicated domestic haplogroups corresponding to Y1B, Y2A and Y2B, respectively, whereas Y1A is split into Y1AA and Y1AB. All five haplogroups were detected in 26 ancient DNA samples from southeast Europe or Asia. Haplotypes from present-day bezoars are not shared with domestic goats and are attached to deep nodes of the trees and networks. Haplogroup distributions for 186 domestic breeds indicate ancient paternal population bottlenecks and expansions during the migrations into northern Europe, eastern and southern Asia and Africa south of the Sahara. In addition, sharing of haplogroups indicates male-mediated introgressions, most notably an early gene flow from Asian goats into Madagascar and the crossbreeding that in the 19^th century resulted in the popular Boer and Anglo-Nubian breeds. More recent introgressions are those from European goats into the native Korean goat population and from Boer goat into Uganda, Kenya, Tanzania, Malawi and Zimbabwe. This study illustrates the power of the Y-chromosomal variants for reconstructing the history of domestic species with a wide geographic range.

Women’s Empowerment and Livestock Vaccination: Evidence from Peste des Petits Ruminants Vaccination Interventions in Northern Ghana

Simple Summary

Small ruminants (goat and sheep) are key livestock species in supporting women’s empowerment (WE) in low- and middle-income countries. Animal vaccines are essential for livestock productivity, hence an important means to support WE. WE is, in turn, important for animal vaccine adoption. Little is known, however, of how WE is associated with animal vaccination for women-controlled livestock assets (e.g., goats and sheep). Our analysis explores the link between domains of WE and knowledge of, access to, and use of peste des petits ruminants (PPR) vaccines. Such knowledge can help inform the design of livestock vaccine systems that are better able to reach women and support their empowerment. Using a partial least squares structural equilibrium model (PLS-SEM), we analyzed data collected using the Women’s Empowerment in Livestock Index (WELI) tool from goat keepers in Northern Ghana, which included a module on the PPR vaccine. We found a strong direct positive association between women and men’s knowledge about animal health and PPR vaccination and a strong indirect positive association between access to PPR vaccines and empowerment. Moreover, women and men goat keepers differed in the dimensions of empowerment that the PPR vaccine facets were strongly associated with—asset ownership and input into decisions concerning livestock was significant for women but not for men. Consequently, policy and actions towards enhancing women’s asset ownership, input into decisions about livestock production, knowledge of animal health and vaccines, and access to vaccines are important in designing effective and equitable livestock vaccine systems.

Abstract

Healthy livestock provide meaningful opportunities to enhance women’s empowerment (WE) in low- and middle-income countries. Animal vaccines are important to keep livestock healthy and productive. However, gender-based restrictions limit women’s access to animal health services, thereby affecting the potential of livestock to enhance their empowerment. While growing empirical evidence reveals that women-controlled livestock (e.g., small ruminants) have important implications for WE and support better household nutrition outcomes, little empirical evidence exists from rigorous analyses of the relationship between WE and animal vaccines for women-controlled livestock species. Our analysis explores the relationship between WE and involvement with PPR vaccination in Ghana. Data collected using the Women’s Empowerment in Livestock Index (WELI) tool from 465 women and 92 men farmers (who keep goats) from northern Ghana, and analyzed using PLS-SEM, revealed a significant direct positive association between knowledge about animal health and PPR vaccines and a significant indirect positive association between access to PPR vaccines and empowerment. The empowerment of women goat farmers, as revealed by our model’s results for the relationship between empowerment and vaccine facets, was significantly represented by asset ownership and input into decisions concerning livestock. These study results reveal important considerations in designing effective and equitable livestock vaccine systems.

Cryptosporidium and Giardia in Livestock in Tigray, Northern Ethiopia and Associated Risk Factors for Infection: A Cross-Sectional Study

The occurrence and species/genotypes of Cryptosporidium and Giardia duodenalis infecting young livestock in selected districts of Tigray, Ethiopia were investigated, along with risks associated with infection. A total of 757 faecal samples were collected from calves, lambs, and goat kids from four rural districts in Tigray, and also from calves in periurban Mekelle, Tigray's main city, and analysed for Cryptosporidium oocysts and Giardia cysts. Farmers answered questionnaires regarding potential risk factors at sample collection. Immunofluorescent antibody staining was used for parasite detection, and PCR at selected genes and sequencing of positive samples was used for molecular characterisation. The occurrence of Cryptosporidium infection was 10, 9, and 4% in calves, lambs, and goat kids, respectively; equivalent figures for Giardia infection were 39, 32, and 21%. Molecular characterisation of Cryptosporidium isolates revealed C. ubiquitum, subtype XIIa in all three host species; C. ryanae in calves and goat kids; C. andersoni and C. bovis were identified only in calves, and C. xiaoi was identified in lambs. For Giardia, Assemblage E predominated in all host species, but among calf isolates we also identified a few potentially zoonotic genotypes (assemblages A (AI) and Assemblage B). Periparturient care was shown to be a particularly relevant risk factor for infection, and infections were less likely to occur under extensive management systems. Our major findings were widespread occurrence of both parasites in livestock, and the apparent lack of the most common zoonotic species. Our results are discussed in relation to other relevant studies. As our study was conducted in Tigray, further investigation in different settings in Ethiopia could provide relevant information on transmission and zoonotic potential. In addition, given the dependency on healthy animals for the livelihoods of the population of Tigray, investigation of the effect of these common parasites on livestock productivity is important.

Recent Insights Into Processing Approaches and Potential Health Benefits of Goat Milk and Its Products: A Review

Goat milk is considered to be a potential source of various macro- and micro-nutrients. It contains a good proportion of protein, fat, carbohydrates, and other nutritional components which help in promoting nutritional and desirable health benefits. Goat milk is considered to be superior in terms of numerous health benefits, and lower risk of allergy, when compared to the milk of other species. Several processing techniques such as pasteurization, ultrafiltration, microfiltration, and ultrasound have been employed to enhance the quality and shelf life of goat milk and its products. The diverse range of goat milk-based products such as yogurt, cheese, fermented milk, goat milk powder, and others are available in the market and are prepared by the intervention of advanced processing technologies. Goats raised in pasture-based feeding systems are shown to have a better milk nutritional composition than its counterpart. Goat milk contains potential bioactive components, which aids in the maintenance of the proper metabolism and functioning of the human body. This review gives insight into the key nutritional ingredients and bioactive constituents present in goat milk and their potential role in the development of various functional foods using different processing technologies. Goat milk could be considered as a significant option for milk consumption in infants, as compared to other milk available.