Response of soil physicochemical properties and enzyme activities to long-term reclamation of coastal saline soil, Eastern China

Dredging wastewater discharge from shrimp ponds affects mangrove soil physical-chemical properties and enzyme activities

Dredging wastewater discharge is a significant environmental concern for mariculture near mangrove ecosystems. However, little attention has been paid to its effects on the soil physical-chemical properties and enzyme activities in mangrove habitats. This study compared the soil physical-chemical properties and enzyme activities in the polluted area that received dredging wastewater from a shrimp pond with those in the control area without wastewater to explore the effects of wastewater discharge on the soil physical-chemical properties and enzyme activities. Variations in soil physical-chemical properties and enzyme activities across different tidal flat areas and depths were also examined. The polluted area exhibited lower soil salinity (10.47 ± 0.58 vs. 15.64 ± 0.54) and moisture content (41.85 ± 1.03 % vs. 45.81 ± 1.06 %) than the control area. Wastewater discharge increased soil enzyme activities, (acid phosphatase, protease, and catalase), resulting in higher inorganic nitrogen (13.20 ± 0.00 μg g-1 vs. 11.60 ± 0.03 μg g-1) but lower total nitrogen (0.93 ± 0.01 mg g-1 vs. 1.62 ± 0.11 mg g-1) in the contaminated zone. From the control to polluted area, there was an approximate increase of 0.43 and 0.83 mg g-1 in soil total phosphorus and soluble phosphate, driven by increased acid phosphatase. However, soil humus and organic matter decreased by 0.04 and 1.22 %, respectively, because of wastewater discharge. The impact of wastewater discharge on the soil physical-chemical properties and enzyme activities was most pronounced in the landward and surface soil layers (0-5 cm). The results showed that wastewater discharge altered soil physical-chemical properties and enzyme activities, accumulating soil bioavailable nutrients (inorganic nitrogen and soluble phosphate), but at the cost of reduced soil quality, especially organic matter, further adversely affecting the overall health of mangrove ecosystems. Prioritizing the management of wastewater discharged from mariculture adjacent to mangrove forests is crucial for mangrove conservation.

Continuous cropping system altered soil microbial communities and nutrient cycles

Understanding the response of microbial communities and their potential functions is essential for sustainability of agroecosystems under long-term continuous cropping. However, limited research has focused on investigating the interaction between soil physicochemical factors and microbial community dynamics in agroecosystems under long-term continuous cropping. This study probed into the physicochemical properties, metabolites, and microbial diversity of tobacco rhizosphere soils cropped continuously for 0, 5, and 20 years. The relative abundance of bacterial genera associated with nutrient cycling (e.g., Sphingomonas) increased while potential plant pathogenic fungi and beneficial microorganisms showed synergistic increases with the duration of continuous cropping. Variations in soil pH, alkeline nitrogen (AN) content, and soil organic carbon (SOC) content drove the shifts in soil microbial composition. Metabolites such as palmitic acid, 3-hydroxypropionic acid, stearic acid, and hippuric acid may play a key role in soil acidification. Those results enhance our ability to predict shifts in soil microbial community structure associated with anthropogenic continuous cropping, which can have long-term implications for crop production.

Multi-omics reveals different impact patterns of conventional and biodegradable microplastics on the crop rhizosphere in a biofertilizer environment

Microplastics (MPs) from the incomplete degradation of agricultural mulch can stress the effectiveness of biofertilizers and ultimately affect the rhizosphere environment of crops. Yet, the involved mechanisms are poorly known and robust empirical data is generally lacking. Here, conventional polyethylene (PE) MPs and poly(butylene adipate-co-butylene terephthalate) (PBAT) / poly(lactic acid) (PLA) biodegradable MPs (PBAT-PLA BioMPs) were investigated to assess their potential impact on the rhizosphere environment of Brassica parachinensis in the presence of Bacillus amyloliquefaciens biofertilizer. The results revealed that both MPs caused different levels of inhibited crop both above- and belowground crop biomass (up to 50.11% and 57.09%, respectively), as well as a significant decrease in plant height (up to 48.63% and 25.95%, respectively), along with an imbalance of microbial communities. Transcriptomic analyses showed that PE MPs mainly affected root's vitamin metabolism, whereas PBAT-PLA BioMPs mainly interfered with the lipid's enrichment. Metabolomic analyses further indicated that PE MPs interfered with amino acid synthesis that involved in crops' oxidative stress, and that PBAT-PLA BioMPs mainly affected the pathways associated with root growth. Additionally, PBAT-PLA BioMPs had a bigger ecological negative impact than did PE MPs, as evidenced by more pronounced alterations in root antioxidant abilities, a higher count of identified differential metabolites, more robust interrelationships among rhizosphere parameters, and a more intricate pattern of impacts on rhizosphere metrics. This study highlights the MPs' impact on crop rhizosphere in a biofertilizer environment from a rhizosphere multi-omics perspective, and has theoretical implications for scientific application of biofertilizers.

Silicon reduces toxicity and accumulation of arsenic and cadmium in cereal crops: A meta-analysis, mechanism, and perspective study

Arsenic (As) and cadmium (Cd) are two toxic metal(loid)s that pose significant risks to food security and human health. Silicon (Si) has attracted substantial attention because of its positive effects on alleviating the toxicity and accumulation of As and Cd in crops. However, our current knowledge of the comprehensive effects and detailed mechanisms of Si amendment is limited. In this study, a global meta-analysis of 248 original articles with over 7000 paired observations was conducted to evaluate Si-mediated effects on growth and As and Cd accumulation in rice (Oryza sativa L.), wheat (Triticum aestivum L.), and maize (Zea mays L.). Si application increases the biomass of these crops under As and/or Cd contamination. Si amendment also decreased shoot As and Cd accumulation by 24.1 % (20.6 to 27.5 %) and 31.9 % (29.0 to 31.9 %), respectively. Furthermore, the Si amendment reduced the human health risks posed by As (2.6 %) and Cd (12.9 %) in crop grains. Si-induced inhibition of Cd accumulation is associated with decreased Cd bioavailability and the downregulation of gene expression. The regulation of gene expression by Si addition was the driving factor limiting shoot As accumulation. Overall, our analysis demonstrated that Si amendment has great potential to reduce the toxicity and accumulation of As and/or Cd in crops, providing a scientific basis for promoting food safety globally.

Effects of water stress on nutrients and enzyme activity in rhizosphere soils of greenhouse grape

In grape cultivation, incorrect water regulation will lead to significant water wastage, which in turn will change soil structure and disrupt soil nutrient cycling processes. This study aimed to investigate the effects of different water regulation treatments [by setting moderate water stress (W1), mild water stress (W2), and adequate water availability (CK)] on soil physical-chemical properties and enzyme activity in greenhouse grape during the growing season. The result showed that the W2 treatment had a negative impact on the build-up of dissolved organic carbon (DOC), nitrate nitrogen (NO3-N), and available phosphorus (AP). Throughout the reproductive period, the W1 and W2 treatments decreased the soil's microbial biomass carbon (MBC) and microbial biomass nitrogen (MBN) contents, and MBC was more vulnerable to water stress. During the growth period, the trends of urease, catalase, and sucrase activities in different soil depth were ranked as 10-20 cm > 0-10 cm > 20-40 cm. The urease activity in 0-10 cm soil was suppressed by both W1 and W2 treatments, while the invertase activity in various soil layers under W1 treatment differed substantially. The W1 treatment also reduced the catalase activity in the 20-40 cm soil layer in the grape growth season. These findings suggested that W2 treatment can conserve water and enhance microbial ecology of greenhouse grape soils. Therefore, W2 treatment was the most effective water regulation measure for local greenhouse grape cultivation.

The potential and prospects of modified biochar for comprehensive management of salt-affected soils and plants: A critical review

Soil salinization has become a global problem that threatens farmland health and restricts crop production. Salt-affected soils seriously restrict the development of agricultural, mainly because of sodium ion (Na+) toxicity, nutrient deficiency, and structural changes in the soil. Biochar is a carbon (C)-based substance produced by heating typical biomass waste at high temperatures in anaerobic circumstances. It has high cation exchange capacity (CEC), adsorption capacity, and C content, which is often used as a soil amendment. Biochar generally reduces the concentration of Na+ in soil colloids through its strong adsorption, or uses the calcium (Ca) or magnesium (Mg) rich on its surface to exchange sodium ions (Ex-Na) from soil colloids through cation exchange to accelerate salt leaching during irrigation. Nowadays, biochar is widely used for acidic soils improvement due to its alkaline properties. Although the fact that biochar has gained increasing attention for its significant role in saline alkali soil remediation, there is currently a lack of systematic research on biochar improvers and their potential mechanisms for identifying physical, chemical, and biological indicators of soil eco-environment assessment and plant growth conditions affected by salt stress. This paper reviews the preparation, modification, and activation of biochar, the effects of biochar and its combination with beneficial salt-tolerant strains on salt-affected soils and plant growth. Finally, the limitations, benefits, and future needs of biochar-based soil health assessment technology in salt-affected soils and plant were discussed. This article elaborates on the future opportunities and challenges of biochar in the treatment of saline land, and a green method was provided for the integrate control to salt-affected soils.

Role of Soil Microbiota Enzymes in Soil Health and Activity Changes Depending on Climate Change and the Type of Soil Ecosystem

The extracellular enzymes secreted by soil microorganisms play a pivotal role in the decomposition of organic matter and the global cycles of carbon (C), phosphorus (P), and nitrogen (N), also serving as indicators of soil health and fertility. Current research is extensively analyzing these microbial populations and enzyme activities in diverse soil ecosystems and climatic regions, such as forests, grasslands, tropics, arctic regions and deserts. Climate change, global warming, and intensive agriculture are altering soil enzyme activities. Yet, few reviews have thoroughly explored the key enzymes required for soil fertility and the effects of abiotic factors on their functionality. A comprehensive review is thus essential to better understand the role of soil microbial enzymes in C, P, and N cycles, and their response to climate changes, soil ecosystems, organic farming, and fertilization. Studies indicate that the soil temperature, moisture, water content, pH, substrate availability, and average annual temperature and precipitation significantly impact enzyme activities. Additionally, climate change has shown ambiguous effects on these activities, causing both reductions and enhancements in enzyme catalytic functions.

Cadmium-Tolerant Bacterium Strain Cdb8-1 Contributed to the Remediation of Cadmium Pollution through Increasing the Growth and Cadmium Uptake of Chinese Milk Vetch (Astragalus sinicus L.) in Cadmium-Polluted Soils

Cadmium (Cd) pollution has attracted global attention because it not only jeopardizes soil microbial ecology and crop production, but also threatens human health. As of now, microbe-assisted phytoremediation has proven to be a promising approach for the revegetation of Cd-contaminated soil. Therefore, it is important to find such tolerant microorganisms. In the present study, we inoculated a bacteria strain tolerant to Cd, Cdb8-1, to Cd-contaminated soils and then explored the effects of Cdb8-1 inoculation on the performance of the Chinese milk vetch. The results showed plant height, root length, and fresh and dry weight of Chinese milk vetch grown in Cdb8-1-inoculated soils increased compared to the non-inoculated control group. The inoculation of Cd-contaminated soils with Cdb8-1 also enhanced their antioxidant defense system and decreased the H2O2 and malondialdehyde (MDA) contents, which alleviated the phytotoxicity of Cd. The inoculation of Cdb8-1 in Cd-contaminated soils attenuated the contents of total and available Cd in the soil and augmented the BCF and TF of Chinese milk vetch, indicating that the combined application of Cd-tolerant bacteria Cdb8-1 and Chinese milk vetch is a potential solution to Cd-contaminated soils.

Dynamics of soil nitrogen availability following conversion of natural forests to various coffee cropping systems in northern Thailand

Land conversion critically affects soil physiochemical and biological properties, yet very little remains clear about the impact of forest conversion on the N pool and related microbial N transformations. Therefore, this study aimed to examine the dynamics of soil N availability following forest conversion into the different coffee cropping systems, and explore the mechanisms behind these dynamics from the microbial N transformation. Disturbed soil samples from two depths (0-20 and 20-40 cm) were collected from four land uses consisting of three different coffee cropping systems (coffee monocultures (C), coffee agroforestry (FC), coffee associated with persimmon (Diospyros kaki L.) (CH)) converted from natural forest and adjacent natural forest (F) in northern Thailand. The soil labile N pools (including ammonium (NH4+), nitrate (NO3-), inorganic N (IN), dissolved organic N (DON) contents and microbial biomass N (MBN)) were measured, as well as the soil total N (STN) content. Soil N transformation rates, including net N mineralization, nitrification, and immobilization, were determined using a laboratory incubation experiment. The results showed that the forest conversion to coffee agroforestry significantly increased soil N content by 39.83 % in topsoil, but no significant difference was observed in C and CH soils as compared to F soil (p ≤ 0.05). The three labile N forms (NH4+, NO3- and DON content) were significantly higher under the C, FC and CH soils in both depths, while the coffee monoculture decreased the MBN content. The increases in soil IN, IN/DON and NO3-/NH4+ ratios used as an N availability indicator were positively associated with an increase in the N mineralization and nitrification processes following the forest conversion. Interestingly, the N immobilization processes in the F and FC soils were significantly higher than those in the C and CH soils, which indirectly regulated a decreased nitrification rate in F and FC soils in our study. With the exception of the FC soil, the nitrification/N immobilization ratios in the C (4.95) and CH (4.08) soils were higher than those in the F (0.70) soil, indicating an increased N loss risk after forest conversion. Therefore, coffee agroforestry systems have the potential to be effective management strategies for improving soil nitrogen sequestration following forest conversion.

Waste seaweed compost and rhizosphere bacteria Pseudomonas koreensis promote tomato seedlings growth by benefiting properties, enzyme activities and rhizosphere bacterial community in coastal saline soil of Yellow River Delta, China

This study investigated the effects of waste seaweed compost and rhizosphere bacteria Pseudomonas koreensis HCH2-3 on the tomato seedlings growth in coastal saline soils and chemical properties, enzyme activities, microbial communities of rhizosphere soil. Microcosmic experiment showed that the seaweed compost and rhizosphere bacteria (SC + HCH2-3) significantly alleviated the negative effects of salinity on the growth of tomato seedlings. SC + HCH2-3 amendment significantly increased the plant height and root fresh biomass of tomato seedling by 105.59% and 55.60% in the coastal saline soils, respectively. The soil properties and enzyme activities were also dramatically increased, indicating that the nutrient status of coastal saline soil was improved by SC + HCH2-3 amendment. In addition, Proteobacteria, Actinobacteriota and Firmicutes were the dominant phyla in the rhizosphere soil after adding seaweed compost and rhizosphere bacteria P. koreensis HCH2-3. The relative abundances of Massilia, Azospira, Pseudomonas and Bacillus increased in treatment SC + HCH2-3. Especially, the beneficial bacteria genera, such as Pseudomonas, Bacillus and Azospira, were significantly correlated with the increases of contents of total nitrogen, nitrate nitrogen and ammonium nitrogen in tomato rhizosphere soil samples. Consequently, adding waste seaweed compost and rhizosphere bacteria P. koreensis HCH2-3 into coastal saline soil was suggested as an effective method to relieve salt stress of tomato plants.

Metals stress on soil enzyme activities and herbs defense in the vicinity of high traffic roadways

This study has investigated the impact of vehicle sourced heavy metals (HMs) on soil enzyme activities and plants in and around high traffic roadways near the metropolitan area. In detail, the defense response against HM pollution was studied by considering the commonly available herbs around the roadside area namely Alternanthera paronychioides, Ageratum conyzoides, Spilanthes acmella, and Parthenium hysterophorus. The study reported that the HM concentrations such as Cu, Ni, Zn, Mn, and Cr were observed in the range of 6.05 ± 0.1 to 309 ± 0.5 mg/kg in roadside soil and 5.2 ± 0.1to 451 ± 4.2 mg/kg in the herbs collected from roadside area. The soil enzyme (urease, dehydrogenase, amylase, catalase, peroxidase, and polyphenol oxidase) activities decreased by 22.56 to 77.84% in roadside soil and lower IC50 values were observed for DPPH (2.32-4.67) and H2O2 (1.59-2.15) free radical scavenging activities in plants collected from roadside area. The flavonoid and phenolic content in plants collected from the roadside area ranges from 12.65 ± 0.2 to 15.75 ± 0.3 mg quercitin/g and 0.61 ± 0.04 to 1.16 ± 0.1 mg gallic acid/g respectively while in plant collected from the control areas ranges from 7.96 ± 0.1 to 11.24 ± 0.05 and 0.47 ± 0.01 to 0.61 ± 0.1. In addition, the contamination factor (CF) (1.53-11.92) and geo-accumulation index (Igeo) (0.031-2.99) in soil and bioaccumulation factor (BAF) (0.72-2.73) of Cu, Ni, Zn, Mn, and Crin plants indicated that the soil and plants growing along the highway were heavily contaminated with HM. Finally, Pearson correlation matrix confirmed the inhibition effect of HM on soil enzymatic activities and enzymatic defense of plants in response to the HM stress.

Composition and assembly mechanisms of prokaryotic communities in wetlands, and their relationships with different vegetation and reclamation methods

Coastal wetlands are undergoing substantial transformations globally as a result of increased human activities. However, compared to other ecosystems, diversity and functional characteristics of microbial communities in reclaimed coastal wetlands are not well studied compared to other ecosystems. This is important because it is known that microorganisms can play a crucial role in biogeochemical cycling within coastal wetland ecosystems. Hence, this study utilized the high-throughput sequencing technique to investigate the structure and assembly processes of microbial communities in reclaimed coastal wetlands. The results revealed a substantial change in soil properties following coastal wetland reclamation. Remarkably, the reclaimed soil exhibited significantly lower pH, soil organic carbon (SOC), and total salinity (TS) values (p < 0.05). The dominant phyla included Proteobacteria, Chloroflexi, Bacteroidetes, Acidobacteria, and Planctomycetes among study sites. However, the relative abundance of Proteobacteria increased from un-reclaimed coastal wetlands to reclaimed ones. The Proteobacteria, Chloroflexi, and Acidobacteria showed higher relative abundance in vegetated soil compared to bare soil, while Bacteroidetes and Planctomycetes exhibited the opposite trend. Notably, vegetation types exerted the strongest influence on microbial diversity, surpassing the effects of soil types and depth (F = 34.49, p < 0.001; F = 25.49, p < 0.001; F = 3.173, p < 0.078, respectively). Stochastic assembly processes dominated in un-reclaimed soil, whereas deterministic processes governed the assembly in artificial sea embankment wetlands (SEW). The presence of Spartina alterniflora in all soil types (except SEW soils) indicated stochastic assembly, while Phragmites australis in reclaimed soils pointed toward deterministic microbial assembly. Furthermore, environmental factors such as pH, soil water content (SWC), SOC, total carbon (TC), total nitrogen (TN), total phosphorus (TP), NH4+-N, vegetation types, soil depth, and geographic distance exhibited significant effects on microbial beta diversity indices. Co-occurrence network analysis revealed a stronger association between taxa in SEW compared to land reclaimed from wetlands (LRW) and natural coastal wetlands (NCW). The bottom soil layer exhibited more complex network interactions than the topsoil layer. Besides soil parameters, reclamation and varieties of vegetation were also substantial factors influencing the composition, diversity, and assembly processes of microbial communities in coastal wetlands.

Exposure to three herbicide mixtures influenced maize root-associated microbial community structure, function and the network complexity

Herbicide mixtures are a new and effective agricultural strategy for managing suppress weed resistance and have been widely used in controlling weeding growth in maize fields. However, the potential ecotoxicological impact of these mixtures on the microbial community structure and function within various root-associated niches, remains inadequately understood. Here, the effects of nicosulfuron, mesotrione and atrazine on soil enzyme activity and microbial community structure and function were investigated when applied alone and in combination. The findings indicated that herbicide mixtures exhibit a prolonged half-life compared to single herbicides. Ecological niches are the major factor influencing the structure and functions of the microbial community, with the rhizosphere exhibiting a more intensive response to herbicide stress. Herbicides significantly inhibited the activities of soil functional enzymes, including dehydrogenase, urease and sucrose in the short-term. Single herbicide did not drastically influence the alpha or beta diversity of the soil bacterial community, but herbicide mixtures significantly increased the richness of the fungal community. Meanwhile, the key functional microbial populations, such as Pseudomonas and Enterobacteriaceae, were significantly altered by herbicide stress. Both individual and combined use of the three herbicides reduced the complexity and stability of the bacterial network but increased the interspecific cooperations of fungal community in the rhizosphere. Moreover, by quantification of residual herbicide concentrations in the soil, we showed that the degradation period of the herbicide mixture was longer than that of single herbicides. Herbicide mixtures increased the contents of NO3--N and NH4+-N in the soil in the short-term. Overall, our study provided a comprehensive insight into the response of maize root-associated microbial communities to herbicide mixtures and facilitated the assessment of the ecological risks posed by herbicide mixtures to the agricultural environment from an agricultural sustainability perspective.

Electrical Conductivity and pH Are Two of the Main Factors Influencing the Composition of Arbuscular Mycorrhizal Fungal Communities in the Vegetation Succession Series of Songnen Saline-Alkali Grassland

Arbuscular mycorrhizal fungi (AMF) are widely distributed microorganisms in the soil, playing an important role in vegetation succession, plant community diversity, and improving soil physicochemical properties. In this study, morphological identification and high-throughput sequencing technology were used to comprehensively analyze the AMF community composition and diversity at different succession stages of Songnen saline-alkali grassland. To determine the root colonization status of plants collected in the field, a colonization system was established using late-succession plants as host plants to verify the existence of mycorrhizal symbiosis and the matching phenomenon of AMF in Songnen saline-alkali grassland. The results indicated that both morphological methods and high-throughput sequencing technology showed that glomus was the dominant genus of AMF in Songnen saline grassland. Redundancy analysis (RDA) and linear regression analysis showed that electrical conductivity (EC) and pH were the main environmental factors affecting AMF species diversity and community structure in the succession sequence of Songnen saline grassland. In addition, the results of root colonization identification and the colonization system test in the field showed that AMF successfully colonized vegetation at different succession stages and had mycorrhizal symbiosis. The results of this study could help to understand the AMF community of Songnen saline-alkali grassland as well as provide a reference and basis for optimizing the AMF community structure of Songnen saline-alkali grassland through human intervention in the future and using mycorrhizal technology to restore and rebuild the degraded ecosystem of Songnen saline-alkali grassland.

The role of phosphorus speciation of biochar in reducing available Cd and phytoavailability in mining area soil: Effect and mechanism

The effect of phosphorus (P) speciation in biochar on soil available Cd and its mechanism to alleviate plant Cd stress remain largely unknown. Here, ammonium polyphosphate (PABC)-, phosphoric acid (PHBC)-, potassium dihydrogen phosphate (PKBC)-, and ammonium dihydrogen phosphate (PNBC)-modified biochar were used to investigate P speciation. The Cd immobilization mechanism of biochar was analyzed by XPS and ³¹P NMR, and the soil quality and the mechanism for the biochar to alleviate Cd stress were also determined. The results demonstrated that PBC (pristine biochar), PABC, PHBC, PKBC, and PNBC reduced the content of soil DTPA-Cd by 14.96 % - 32.19 %, 40.44 % - 47.26 %, 17.52 % - 41.78 %, and 21.90 % - 36.64 %, respectively. The XPS and ³¹P NMR results demonstrated that the orthophosphate on the surface of PABC, PHBC, PKBC, and PNBC accounted for 82.06 %, 62.77 %, 33.1 %, and 54.46 %, respectively, indicating that PABC has the highest passivation efficiency on soil Cd, which was ascribed to the highest orthophosphate content on the biochar surface. Pot experiments revealed that PABC could reduce the Cd content by 4.18, 4.41, 4.43, 2.94, and 2.57 folds in roots, stems, leaves, pods, and grains, respectively, and at the same time increase the dry and fresh weight of soybean and decrease Cd toxicity to soybean by improving the antioxidant system. In addition, application of the P-modified biochars improved the enzyme activity and physicochemical properties of the soil. This study provides a new perspective for studying the effect of P-modified biochars on soil Cd immobilization.

New insight into blue carbon stocks and natural-human drivers under reclamation history districts for sustainable coastal development: A case study from Liaohe River Delta, China

Blue carbon is a vital aspect of climate change mitigation, which necessitates the identification of stocks and drivers for implementing mitigation strategies. However, reclamation may be among the most invasive forms, and the question of its influence has not been addressed well in blue carbon research. Therefore, the effects of reclamation on carbon stocks and the interaction of crucial drivers from reclamation time areas (1930s, 1960s, 1990s) were evaluated in the Liaohe River Delta (LRD) and compared with natural reserves (core, buffer, experimental areas). Carbon stocks based on InVEST model were lower than preexisting conditions (1.930 × 10⁶ Mg-1.893 × 10⁶ Mg). One-way Analysis of Variance showed that average carbon stocks accumulated 55 years after reclamation and reached the lowest value (13.19 Mg·ha^-1) in 85 years. The interaction analysis of dominant drivers affecting carbon showed the difference between reclaimed areas and reserves regarding potential effect pathways. In the 1930s and 1960s reclamation time areas, crop yield and industrial output determined blue carbon by changing NO₃^--N and AP. In the 1990s reclamation time area, population density played an important role. In defining the impact of vegetation cover on carbon within the reserves, the distance to the coast and residence were significant factors. This study demonstrated that coastal management practices, such as the size of industry and population control and the balanced fertilization techniques in reclamation areas, maintaining adequate vegetation cover in reserve, played a crucial role in the improvement of blue carbon sinks.

Divergent responses and ecological risks of wheat (Triticum aestivum L.) to cerium oxide nanoparticles in different soil types

Cerium oxide nanoparticles (nCeO₂), as a common component for sustainable agriculture, have been broadly investigated due to their potential threat to the soil biodiversity and health. However, few studies considered the impacts of soil types on response of ecotoxicity of nCeO₂ to plants. This study aimed to explore the effects of soil properties on ecological response of nCeO₂ to wheat (Triticum aestivum L.) and assess the ecological risks of nCeO₂ (0-1000 mg/kg) in red soil, yellow-brown soil, and brown soil by applying a multi-biomarker approach. The results showed that the clay content had the extremely significant correlation with acid solute fraction Ce in soil. Ce accumulation in wheat largely depended on acid-soluble fraction Ce, but not the total Ce. Both urease and invertase activities were highest in brown soil among the three soils, after exposure to diverse concentration nCeO₂. Although wheat has a stronger antioxidant capacity in red soil, integrated biomarker response index proved that nCeO₂ showed least toxicity to wheat in brown soil (IBRv2 = 34.3) among the three soils. These results indicated that the toxicity level of nCeO₂ to wheat was not only related to contaminated concentration, but also greatly depended on soil properties. The soil types are important factors governing ecological risk of nCeO₂ in soil, which needs to be adequately assessed and properly controlled.

Combination of Biochar and Functional Bacteria Drives the Ecological Improvement of Saline-Alkali Soil

The addition of functional bacteria (FB) is low-cost and is widely applied in saline-alkali soil remediation, which may gradually become ineffective due to inter-specific competition with indigenous bacteria. To improve the adaptability of FB, the target FB strains were isolated from local saline-alkali soil, and the combined effects of FB and biochar were explored. The results showed that FB isolated from local soil showed better growth than the purchased strains under high saline-alkali conditions. However, the indigenous community still weakened the function of added FB. Biochar addition provided a specific niche and increased the relative abundance of FB, especially for Proteobacteria and Bacteroidota. As a result, the co-addition of 10% biochar and FB significantly increased the soil available phosphorus (AP) by 74.85% and available nitrogen (AN) by 114.53%. Zea Mays's growth (in terms of height) was enhanced by 87.92% due to the decreased salinity stress and extra nutrients provided.

The effect of salinity on soil chemical characteristics, enzyme activity and bacterial community composition in rice rhizospheres in Northeastern Thailand

Saline soil is one of the major problems limiting rice productivity in the Northeastern area of Thailand. Thus, the aims of this study were to determine soil physicochemical analysis and soil enzyme activities, and bacterial communities in the rhizosphere of 'RD 6' rice grown in salt-affected rice fields. The Ban Thum sample showed the highest electrical conductivity (EC; greater than 6 dS m^-1) and total Na, while the EC in other fields were at non- or slightly saline levels. The principal component analysis revealed that soil chemical characteristics and soil enzymes activities explained 73.4% of total variation. Soil enzyme activities including dehydrogenase and fluorescein diacetate (FDA) hydrolysis, and soil characteristics including organic matter (OM) and organic carbon (OC) were significantly negatively correlated to EC. This indicated that these soil properties were adversely impacted by salts. Interestingly, activities of all hydrolytic enzymes were not affected by soil salinity. Bacteria that were able to colonize the rhizosphere soils were Achromobacter cholinophagum, Rhizobium tarimense, and unculturable bacteria. In this regard, study on the relationship of soil chemical characteristics and soil enzyme activities together with bacterial communities provided promising data for assessing rice field soil quality in the future.

Changes in rhizospheric microbiome structure and soil metabolic function in response to continuous cucumber cultivation

With the increasing reliance on intensive arable agriculture, analysis of the problems associated with continuous cropping has become a global research focus. Here, high-throughput sequencing and nontargeted metabolomics were used to evaluate the responses of soil microbial community structure and soil metabolic function to continuous cucumber cultivation (from 1 to 18 years of continuous cultivation) in greenhouses. Continuous cucumber cropping resulted in increased soil nutrient concentrations, but decreased concentrations of available nutrients. The abundance of several bacterial genera associated with nutrient cycling, such as Bacillus and Sphingomonas, was reduced by continuous cucumber cultivation. The abundance of several beneficial fungal genera, including pathogen antagonists (e.g. Chaetomium, Mortierella, Aspergillus, and Penicillium), were found to gradually decrease in response to the increased duration of continuous cropping. 3-amino-2-naphthoic acid and L-valine increased initially and then decreased as the cropping continued, which were related to fatty acid metabolism and amino acid biosynthesis. We also confirmed a close association between microbial community structure and soil metabolites. This study linked the changes in microbial community structure and metabolites in the rhizosphere soil and provided new insights into soil-microbial interactions in continuous cucumber culture systems.

Effects of biochar and organic-inorganic fertilizer on pomelo orchard soil properties, enzymes activities, and microbial community structure

Fertilizer management can influence soil microbes, soil properties, enzymatic activities, abundance and community structure. However, information on the effects of biochar in combination with organic-inorganic fertilizer after 3 years under pomelo orchard on soil bacterial abundance, soil properties and enzyme activities are not clear. Therefore, we conducted a field experiment with seven treatments, i.e., (1) Ck (control), (2) T1 (2 kg biochar plant^–1), (3) T2 (4 kg biochar plant^–1), (4) T3 (2 kg organic-inorganic mixed fertilizer plant^–1), (5) T4 (4 kg biochar + 1.7 kg organic-inorganic mixed fertilizer plant^–1), (6) T5 (4 kg biochar + 1.4 kg organic-inorganic mixed fertilizer plant^–1), and (7) T6 (4 kg biochar + 1.1 kg organic-inorganic mixed fertilizer plant^–1). The soil microbial communities were characterized using high-throughput sequencing of 16S and internal transcribed spacer (ITS) ribosomal RNA gene amplicons. The results showed that biochar combined with organic-organic fertilizer significantly improved soil properties (pH, alkali hydrolysable nitrogen, available phosphorus, available potassium, and available magnesium) and soil enzymatic activities [urease, dehydrogenase (DHO), invertase and nitrate reductase (NR) activities]. Furthermore, soil bacterial relative abundance was higher in biochar and organic-inorganic treatments as compared to control plots and the most abundant phyla were Acidobacteria (40%), Proteobacteria (21%), Chloroflexi (17%), Planctomycetes (8%), Bacteroidetes (4%), Verrucomicrobia (2%), and Gemmatimonadetes (1%) among others. Among the treatments, Acidothermus, Acidibacter, Candidatus Solibacter and F473 bacterial genera were highest in combined biochar and organic-inorganic treatments. The lowest bacterial abundance and bacterial compositions were recorded in control plots. The correlation analysis showed that soil attributes, including soil enzymes, were positively correlated with Chloroflexi, Planctomycetes, verrucomicrobia, GAL15 and WPS-2 bacterial abundance. This study demonstrated that biochar with organic-inorganic fertilizer improves soil nutrients, enzymatic activities and bacterial abundance.

Response of Soil Enzyme Activities to Natural Vegetation Restorations and Plantation Schemes in a Landslide-Prone Region

Soil enzyme activities in different plantation types and land use patterns could indicate changes in soil quality. This research was aimed at exploring the dynamics of soil enzyme activities involved in carbon, nitrogen and phosphorus cycling, and their responses to changes in soil physicochemical properties resulting from natural vegetation restorations and plantation schemes. Knowing about the effects of soil physicochemical properties on soil enzyme patterns is crucial for understanding ecosystem functions and processes. The study selected four main land-use types (natural forestland, natural grassland, artificial forestland, and artificial grassland) and one control plot (bare land) in the West Qinling Mountains, China, which is a typical landslide region. We collected the soil samples from each land use type and tested their physicochemical properties and enzyme activities compared with control land. The results showed that both natural vegetation restoration and artificial plantation schemes have significant effects on enzyme activities. Soil physicochemical properties explained 92.2% of the variation in soil enzyme activities for natural vegetation restoration, while it only explained 77.8% of the variation in soil enzyme activities for plantation schemes. Furthermore, natural vegetation had a greater effect than the plantation schemes on soil enzyme activities.

Biochar alters chemical and microbial properties of microplastic-contaminated soil

The occurrence of microplastics (MPs) in soils can negatively affect soil biodiversity and function. Soil amendments applied to MP-contaminated soil can alter the overall soil properties and enhance its functions and processes. However, little is known about how soil amendments improve the quality of MP-contaminated soils. Thus, the present study used a microcosm experiment to explore the potential effects of four types of biochar on the chemical and microbial properties of low-density polyethylene (LDPE) MP-contaminated soil under both drought and well-watered conditions. The results show that the biochars altered soil pH, electrical conductivity (EC), available phosphorous, and total exchangeable cations (TEC) with some variability depending on the biochar type. Oilseed rape straw (OSR)-derived biochars increased soil pH, EC, and TEC under both water conditions with the highest values of 7.94, 0.54 dS m^-1 and 22.0 cmol₍₊₎ kg^-1, respectively. Soil enzyme activities varied under all treatments; in particular, under drought conditions, the fluorescein diacetate activity increased in soils with high temperature (700 °C) biochar. The application of soft wood pellet biochar (700 °C) to MP-contaminated soil increased urease activity by 146% under well-watered conditions. OSR-derived biochars significantly reduced soil acid phosphatase activity under both water conditions. With biochar supplementation, the diversity indices of the bacterial community increased in well-watered soil but not in soil under drought conditions. The abundance of bacterial phyla, such as Firmicutes, Proteobacteria, Actinobacteria, Dictyoglomi, and Gemmatimonadetes, was relatively high in all treatments. Biochar application resulted in negligible variations in bacterial communities under drought conditions but significant variations under well-watered conditions. The findings of this study imply that biochar can be used as a soil amendment to improve the overall soil quality of MP-contaminated soil, but its impact varies depending on the pyrolysis feedstock and temperature. Thus, selecting a suitable biochar is important for improving the soil quality in MP-contaminated soils.

Improvements in Soil Physical, Chemical and Biological Properties at Natural Saline and Non-Saline Sites Under Different Management Practices

Soil salinity is known to be a significant threat to food security for the increasing population, which is further aggravated under the climate change scenario. Indo-Gangetic plain (IGP) is one of the most productive in the world and is most affected by salinity. To understand the modifications in soil characteristics under different management practices followed to reclaim salinity affected land, the present study was conducted at variously reclaimed saline areas of three districts of Uttar Pradesh situated in IGP. Soil from six sites (electrical conductivity (EC) ranging from 0.89 to 10.28 mS) following different management practices, RJT (Rajatalab, rice-wheat +organic), BBN (Beerbhanpur, rice-wheat +inorganic), MZM (Mirzamurad, rice-mustard +organic), BRP (Baraipur, rice-wheat +organic), DHR (Dharahara, rice-fallow +organic) and SLM (Salempur, rice-wheat +inorganic) were assessed for physical, chemical and biological properties during the vegetative stage and after harvest of crops. Soil quality index (SQI) based on representative parameters obtained by principal component analysis and yield of crops were also calculated at saline and non-saline sites. The SLM site showed highest salinity followed by BRP, DHR, MZM, while BBN and RJT were non-saline. Total organic carbon, total nitrogen, microbial activity, and microbial biomass were low at saline compared to non-saline sites but were higher under organic matter amendment compared to inorganic. Activities of soil enzymes were negatively influenced while β-glucosidase and alkaline phosphatase activities were enhanced under higher salinity. Organic amendments were more efficient in improving the soil properties along with SQI at saline soil resulting into a better yield in all crop combinations compared to inorganic amendments.

Different Forms and Proportions of Exogenous Nitrogen Promote the Growth of Alfalfa by Increasing Soil Enzyme Activity

Nitrogen fertilization is a simple and effective field management strategy for increasing plant productivity, but the regulatory mechanisms of nitrogen forms and proportions on soil nutrients and plant growth remain unclear. Therefore, we investigated soil enzyme activities and nutrient contents of alfalfa under different forms and proportions of exogenous nitrogen addition. Results showed that nitrogen input significantly increased the activity of three oxidoreductases (hydroxylamine reductase, nitrate reductase, and nitrite reductase) while having no significant effects on urease. A high proportion of ammonium nitrogen significantly increased neutral protease activity. The amylase activity markedly increased under mixed-nitrogen addition but decreased under single-nitrogen addition. Additionally, the contents of soil nutrients (soil organic matter, total nitrogen, nitrate nitrogen, ammonium nitrogen, available phosphorus, and available potassium) were significantly increased under different exogenous nitrogen inputs, which drove the changes in enzyme activities. Further, nitrogen addition also improved the biomass and nitrogen content of alfalfa. These findings indicated that applying different forms and proportions of exogenous nitrogen may stimulate soil enzyme activities, which will accelerate the transformation of nutrients and then promote alfalfa growth.

The Phlorizin-Degrading Bacillus licheniformis XNRB-3 Mediates Soil Microorganisms to Alleviate Apple Replant Disease

In this study, an endophytic phlorizin-degrading Bacillus licheniformis XNRB-3 was isolated from the root tissue of healthy apple trees, and its control effect on apple replant disease (ARD) and how it alleviates the pathogen pressure via changes in soil microbiomes were studied. The addition of strain XNRB-3 in Fusarium infested soils significantly reduced the number of pathogens in the soil, thus resulting in a lower disease incidence, and the relative control effect on Fusarium oxysporum reached the highest of 66.11%. The fermentation broth can also protect the roots of the plants from Fusarium oxysporum, Fusarium moniliforme, Fusarium proliferatum, and Fusarium solani infection. These antagonistic effects were further validated using an in vitro assay in which the pathogen control was related to growth and spore germination inhibition via directly secreted antimicrobial substances and indirectly affecting the growth of pathogens. The secreted antimicrobial substances were identified using gas chromatography-mass spectrometry (GC-MS) technology. Among them, alpha-bisabolol and 2,4-di-tert-butylphenol had significant inhibitory effects on many planted pathogenic fungi. Butanedioic acid, monomethyl ester, and dibutyl phthalate promoted root development of Arabidopsis plants. Strain XNRB-3 has multifarious plant growth promoting traits and antagonistic potential. In pot and field experiments, the addition of strain XNRB-3 significantly promoted the growth of plants, and the activity of enzymes related to disease resistance [superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT)] was also significantly enhanced. It also reduced the abundance of four species of Fusarium and the content of phenolic acids in the rhizosphere soil, improved soil microbial community structure and nutritional conditions, and increased soil microbial diversity and activity, as well as the soil enzyme activity. The above results indicated that B. licheniformis XNRB-3 could be developed into a promising biocontrol and plant-growth-promoting agent.

Straw and straw biochar differently affect phosphorus availability, enzyme activity and microbial functional genes in an Ultisol

Crop straw is commonly returned back to agricultural fields to improve soil nutrient status. In order to compare the effects of straw returning modes (direct and carbonization returning) on the phosphorus (P) availability in acidic soils and explore possible chemical and microbial mechanisms, a pot experiment was conducted. The rice straw, canola stalk at the rate of 1% (w/w) and their corresponding biochar produced by the same amount of straw at 350 °C and 550 °C were used, and two-season crops (rice and soybean) were planted. Results indicated that the content of available P in biochar-treated soils was significantly higher than in the straw-treated soils owing to the biochar soluble P and increased pH. Straw returning increased the activities of urease, sucrase and catalase more than biochar. Biochar mode significantly increased the activity of alkaline phosphatase (ALP), while decreased the acid phosphatase (ACP) relative to the straw mode. Likewise, there were a significant rise in the copy number of phoD gene and a drop of phoC in the biochar mode. The P functional genes (phoD, gcd and pqqC) had the higher copy numbers in soils with biochar made at 350 °C. Similarly, biochar made at 350 °C improved the yields of rice and soybean more effectively. Therefore, straw returning modes affected the availability of P differently via chemical and microbial pathways and the ALP regulated by phoD played a crucial role in the conversion of P. Results demonstrated that biochar returning had a larger impact on the availability of P and developed the effectiveness of crop production than the straw returning directly.

Mechanism of bio-electrokinetic remediation of pyrene contaminated soil: Effects of an electric field on the degradation pathway and microbial metabolic processes

In this study, the mechanism of bio-electrokinetic (BIO-EK) remediation to improve the degradation of pyrene was evaluated based on an analysis of the intermediate products and the microbial community. The results show that BIO-EK remediation has a higher pyrene degradation efficiency on pyrene and its intermediate products than the bioremediation and electrokinetic (EK) remediation processes. A series of intermediate products were detected. According to the type of the intermediate products, two degradation pathways, biological metabolism and electrochemical oxidation, are proposed in the BIO-EK remediation of pyrene. Furthermore, the primary microbial taxa involved in the pollutant degradation changed, which led to variations in the functional gene components. The abundant and functional genes related to metabolism were specifically analyzed. The results indicate that the electric field promotes the expression of metabolisms associated with 14 carbohydrates, 13 lipids, 13 amino acids, five energies, and in particular, 11 xenobiotics. These results suggest that in addition to the promotion effect on the microbial metabolism caused by the electric field, BIO-EK remediation can promote the degradation of pollutants due to the coexistence of a microbial metabolic pathway and an electrochemical oxidation pathway.

Adaptive Mechanisms of Halophytes and Their Potential in Improving Salinity Tolerance in Plants

Soil salinization, which is aggravated by climate change and inappropriate anthropogenic activities, has emerged as a serious environmental problem, threatening sustainable agriculture and future food security. Although there has been considerable progress in developing crop varieties by introducing salt tolerance-associated traits, most crop cultivars grown in saline soils still exhibit a decline in yield, necessitating the search for alternatives. Halophytes, with their intrinsic salt tolerance characteristics, are known to have great potential in rehabilitating salt-contaminated soils to support plant growth in saline soils by employing various strategies, including phytoremediation. In addition, the recent identification and characterization of salt tolerance-related genes encoding signaling components from halophytes, which are naturally grown under high salinity, have paved the way for the development of transgenic crops with improved salt tolerance. In this review, we aim to provide a comprehensive update on salinity-induced negative effects on soils and plants, including alterations of physicochemical properties in soils, and changes in physiological and biochemical processes and ion disparities in plants. We also review the physiological and biochemical adaptation strategies that help halophytes grow and survive in salinity-affected areas. Furthermore, we illustrate the halophyte-mediated phytoremediation process in salinity-affected areas, as well as their potential impacts on soil properties. Importantly, based on the recent findings on salt tolerance mechanisms in halophytes, we also comprehensively discuss the potential of improving salt tolerance in crop plants by introducing candidate genes related to antiporters, ion transporters, antioxidants, and defense proteins from halophytes for conserving sustainable agriculture in salinity-prone areas.

Spatiotemporal dynamics in soil iron affected by wetland conversion on the Sanjiang Plain

Since the 1950s, nearly 80% of wetlands in the Sanjiang Plain have been converted into paddy fields. The conversion might affect the solubility and mobility of soil iron, influencing the export of iron into the Amur River and the primary production of the Okhotsk Sea. However, information regarding long‐term studies of the spatiotemporal dynamics of soil iron after cultivation is limited. In this study, six regions, including 18 plots in the Sanjiang Plain, were selected as sampling sites covering natural wetlands and paddy fields with planting ages of 2, 5, 11, 18, and 25 years after conversion from the wetland. Samples were collected at six different depths (0–10, 10–20, 20–40, 40–60, 60–90, and 90–120 cm) analyzed for water‐soluble ferrous iron (Fe[II]), water‐soluble iron (Few), complex iron (Fep), amorphous iron oxides (Feo), free iron oxides (Fed), and total iron (Fet) and six soil physicochemical characteristics. Two years after the conversion of wetlands to rice fields led to an immediate decrease in Fe(II), Few, Fep/Fed, and Feo/Fed, while the Fep and Feo contents decreased at 5 years. Both the concentrations and stocks of soil Fet increased gradually during the first 18 years. The findings in the Sanjiang Plain suggest that the function of wetlands after conversion as a source of iron might decrease with increasing time, with potential ecological effects on the neighboring marine environment. Recently initiated wetland restoration would protect the land ecosystems in the Sanjiang Plain and promote the future sustainability of the Amur Basin.

Agricultural management and cultivation period alter soil enzymatic activity and bacterial diversity in litchi (Litchi chinensis Sonn.) orchards

BACKGROUND

Agricultural management and temporal change including climate conditions and soil properties can result in the alteration of soil enzymatic activity and bacterial community, respectively. Therefore, different agricultural practices have been used globally to explore the soil quality. In this study, the temporal variations in soil property, enzymatic activity, and bacterial community at three successive trimester sampling intervals were performed in the soil samples of litchi orchards that were maintained under conventional and sustainable agricultural practices.

RESULTS

Agricultural management found to significantly influence arylsulfatase, β-glucosidase, and urease activities across time as observed by repeated-measures analysis of variance. Shannon and Simpson diversity indices, and the relative abundance of predominant Acidobacteria and Proteobacteria were significantly influenced by temporal change but not agricultural management. This suggested that soil enzymatic activity was more susceptible to the interaction of temporal change and agricultural management than that of the bacterial community. Multiple regression analysis identified total nitrogen, EC, and phosphorus as the significant predictors of acid phosphatase, arylsulfatase, and β-glucosidase for explaining 29.5-39% of the variation. Moreover, the soil pH and EC were selected for the SOBS, Chao, ACE, and Shannon index to describe 33.8%, 79% of the variation, but no significant predictor was observed in the dominant bacterial phyla. Additionally, the temporal change involved in the soil properties had a greater effect on bacterial richness and diversity, and enzymatic activity than that of the dominant phyla of bacteria.

CONCLUSIONS

A long-term sustainable agriculture in litchi orchards would also decrease soil pH and phosphorus, resulting in low β-glucosidase and urease activity, bacterial richness, and diversity. Nevertheless, application of chemical fertilizer could facilitate the soil acidification and lead to adverse effects on soil quality. The relationship between bacterial structure and biologically-driven ecological processes can be explored by the cross-over analysis of enzymatic activity, soil properties and bacterial composition.

Effects of Heavy Metals/Metalloids and Soil Properties on Microbial Communities in Farmland in the Vicinity of a Metals Smelter

Microorganisms play a fundamental role in biogeochemical cycling and are highly sensitive to environmental factors, including the physiochemical properties of the soils and the concentrations of heavy metals/metalloids. In this study, high-throughput sequencing of the 16S rRNA gene was used to study the microbial communities of farmland soils in farmland in the vicinity of a lead–zinc smelter. Proteobacteria, Acidobacteria, Actinobacteria, Bacteroidetes, and Gemmatimonadetes were the predominant phyla in the sites of interest. Sphingomonas, Gemmatimonas, Lysobacter, Flavisolibacter, and Chitinophaga were heavy metal-/metalloid-tolerant microbial groups with potential for bioremediation of the heavy metal/metalloid contaminated soils. However, the bacterial diversity was different for the different sites. The contents of heavy metal/metalloid species and the soil properties were studied to evaluate the effect on the soil bacterial communities. The Mantel test revealed that soil pH, total cadmium (T-Cd), and available arsenic played a vital role in determining the structure of the microbial communities. Further, we analyzed statistically the heavy metals/metalloids and the soil properties, and the results revealed that the microbial richness and diversity were regulated mainly by the soil properties, which correlated positively with organic matter and available nitrogen, while available phosphorus and available potassium were negatively correlated. The functional annotation of the prokaryotic taxa (FAPROTAX) method was used to predict the function of the microbial communities. Chemoheterotrophy and airborne chemoheterotrophy of the main microbial community functions were inhibited by soil pH and the heavy metals/metalloids, except in the case of available lead. Mantel tests revealed that T-Cd and available zinc were the dominant factors affecting the functions of the microbial communities. Overall, the research indicated that in contaminated soils, the presence of multiple heavy metals/metalloids, and the soil properties synergistically shaped the structure and function of the microbial communities.

Ubiquitousness of Haloferax and Carotenoid Producing Genes in Arabian Sea Coastal Biosystems of India

This study presents a comparative analysis of halophiles from the global open sea and coastal biosystems through shotgun metagenomes (n = 209) retrieved from public repositories. The open sea was significantly enriched with Prochlorococcus and Candidatus pelagibacter. Meanwhile, coastal biosystems were dominated by Marinobacter and Alcanivorax. Halophilic archaea Haloarcula and Haloquandratum, predominant in the coastal biosystem, were significantly (p < 0.05) enriched in coastal biosystems compared to the open sea. Analysis of whole genomes (n = 23,540), retrieved from EzBioCloud, detected crtI in 64.66% of genomes, while cruF was observed in 1.69% Bacteria and 40.75% Archaea. We further confirmed the viability and carotenoid pigment production by pure culture isolation (n = 1351) of extreme halophiles from sediments (n = 410 × 3) sampling at the Arabian coastline of India. All red-pigmented isolates were represented exclusively by Haloferax, resistant to saturated NaCl (6 M), and had >60% G + C content. Multidrug resistance to tetracycline, gentamicin, ampicillin, and chloramphenicol were also observed. Our study showed that coastal biosystems could be more suited for bioprospection of halophiles rather than the open sea.

Effects of continuous cucumber cropping on crop quality and soil fungal community

Long-term continuous cropping is a common practice in facility vegetable production, which has an adverse effect on cucumber yield and quality. Soil fungi are of great significance for creating a normal soil ecological environment. However, the impact of continuous cropping on cucumber quality and soil fungal community has yet to be understood. In this study, we evaluated the effects of continuous cropping on cucumber using high-throughput sequencing technology. The results showed that the extension of continuous cropping would increase nitrate and total acidity of cucumber, while the contents of vitamin C (VC), soluble sugar, and protein were decreased. The increase of continuous cropping duration also reduced the fungal diversity of the cucumber soil. For example, the activity of three dominant fungal phylums, Ascomycota, Aphelidiomycota, and Basidiomycota, decreased with the extension of planting years. The relative abundance of the two fungi species (Remersonia_thermophila, Mortierella_oligospora) was negatively correlated with the contents of available phosphorus and available potassium (P < 0.05). Redundancy analysis (RDA) found that soil electrical conductivity (EC), available phosphorus (AP), and pH accounted for the top three major factors of fungal community structure changes. The soil fungal community was changed during the continuous cucumber cultivation, which might be the result of the combined cultivation period of cucumber and excessive application of chemical fertilizers (nitrogen fertilizer, phosphate fertilizer, etc.). Our study provides a theoretical basis for the understanding of the impact of continuous cropping in cucumber facilities.

Effects of different Tamarix chinensis-grass patterns on the soil quality of coastal saline soil in the Yellow River Delta, China

Construction of circumlittoral shelter forest is of great significance to maintain ecological security of coastal zones, the safety of people's lives and property in the Yellow River Delta (YRD) in China. Tamarix chinensis-grass patterns have shown obvious advantages in construction of circumlittoral shelter forest and improving the soil quality of coastal saline soil. This study aimed to explore the soil-improving effects of various Tamarix chinensis-grass community patterns and identify the best vegetation pattern for improving the soil quality in the coastal saline-alkali land. Six kinds of Tamarix chinensis-grass community patterns were selected from the saline-alkali soil of the YRD, with bare land as the control. Effects of different Tamarix chinensis-grass patterns on the coastal saline soil were evaluated using statistical methods (e.g. principal component analysis and fuzzy membership function method). The results showed that various Tamarix chinensis-grass community patterns significantly decreased the salt contents and increased the available nutrient contents in the coastal saline-alkali soil. The soil improvement effects showed obvious distinctions among the different Tamarix chinensis-grass patterns. The mixed forest-grass pattern consisting of Tamarix chinensis, Phragmites australis, and other salt-resistant grasses showed the best effects in relation to reducing salt, preventing alkalization and increasing the soil nutrients, which resulted in the lowest salt contents and the highest nutrients. Grass species play a major role in increasing soil nutrient contents, and the density of new Tamarix chinensis forest contributes greatly to the decrease of soil salt. And the more kinds of grass species are, the better improvement effects they will have. Therefore, during the construction of the circumlittoral shelter forest system in the muddy coastal zone of the YRD, it is recommended to prioritize the high density Tamarix chinensis-Phragmites australis (TPA) community pattern, and live together with other kinds of salt-resistant grasses.

Differential effects of various reclamation treatments on soil characteristics: an experimental study of newly reclaimed tidal mudflats on the east China coast

Reclamation of coastal land is increasingly being used as a means of raising agricultural productivity and improving food security in China. Applications of organic and inorganic supplements on reclaimed soils can significantly adjust a range of soil properties, C, N, P content and stoichiometry, and extracellular enzyme activities. However, the linkages between soil C꞉N꞉P stoichiometry and extracellular enzyme activities following reclamation of coastal saline soil remain largely unclear. In this experimental study, treatments included control (CK), chicken manure (OM), polyacrylamide plus chicken manure (PAM+OM), straw mulching plus chicken manure (SM + OM), buried straw plus chicken manure (BS + OM), and bio-organic manure plus chicken manure (BM + OM) were conducted to explore the linkages between soil physicochemical characteristics in reclaimed soils under different treatments and to evaluate their impact on oat yield. Soils under all reclamation treatments exhibited higher moisture content and, with the exception of SM + OM, lower soil pH compared to the control. The reclamation treatments also significantly decreased soil bulk density (BD) and soil salt content (SSC), and increased soil organic carbon (SOC), total nitrogen (TN) and organic phosphorus (OP). Our study of soil C꞉N꞉P stoichiometry revealed that newly reclaimed soils in the study area are N limited. Additionally, soil invertase (INV), urease (URE) and alkaline phosphatase (ALP) activity under different reclamation treatments were significantly enhanced compared with CK in surface soil, while soil catalase (CAT) activity was observed to be much higher in BM + OM than in other treatments. Mean oat yields for each of the treatments were ranked as follows: BM + OM > SM + OM > PAM + OM > BS + OM > OM > CK treatment. Our results also indicate that TN (12.1% and 12.4%) was the main factor affecting URE and ALP, whereas BD (13.5%) and pH (8.5) were key factors affecting INV and CAT activity, respectively.

The role of bacterial communities in shaping Cd-induced hormesis in 'living' soil as a function of land-use change

Bacterial communities and soil physicochemical properties shape soil enzymes activities. However, how environmental factors and bacterial communities affect the relationship between increasing doses of soil pollutants and soil alkaline phosphatase (ALP), an index of soil microbiota activity, remains poorly understood. In this study, we investigated the response of soil ALP to 13 doses of Cd (0 and 0.01-100 mg/kg) under four land uses, viz. grassland (GL), natural forest (NF), plantation forest (PF), and wheat field (WF). We found that Cd commonly induced hormetic-like responses of soil ALP, with a maximum stimulation of 10.7%, 10.1%, 11.6%, and 14.5% in GL, NF, PF, and WF, respectively. The size of the hormetic zone (Hor_zone), an integrated indicator of the stimulation phase and biological plasticity, was in the order GL > WF > PF > NF, and the hormetic zone occurred in the dose range of 5-10, 0.3-10, 0.8-3, and 3-5 mg/kg, respectively. These results indicate highly pleiotropic responses of 'living' soil system to promote resilience to Cd contamination, with soil microbiota potentially contributing to soil ALP's hormetic-like response under different land uses. The hormetic-like response of 'living' soil ALP in different land uses offers a new insight into the identification and minimization of the ecological risks of land-use change in Cd-contaminated lands.

Soil organic matter and salinity as critical factors affecting the bacterial community and function of Phragmites australis dominated riparian and coastal wetlands

Soil salinization poses a great threat to the natural ecosystem and interferes with the structure and function of the biological community, resulting in different vegetation distributions. However, little attention is paid to the changes in microbial community in different wetland types with the same vegetation. In this study, the Yellow River Delta was used as a model because of its typical and extensive distribution of Phragmites australis-dominated saltwater and freshwater wetlands. We investigated the differences in the structure and function of bacterial communities, as well as their relationships with soil properties in coastal (Zone A) and riparian (Zone B) wetlands. Results showed higher salinity and pH in Zone A than Zone B (p < 0.05), whereas TN (p < 0.05) and SOM were lower than those in Zone B. Significant differences existed in microbial community composition between Zones A and B. The nitrifying-bacteria Nitrospira and norank_f_Nitrosomonadaceae had high abundance in Zones A and B. Alcanivorax, Halomonas, and Marinobacter were extensively distributed in Zone A, whereas Flavobacterium and Pseudomonas were dominant in Zone B, indicating the diversity characteristics of denitrifying bacteria. Conversely, methane-oxidizing bacteria Methylophaga were significantly higher in Zone A than in Zone B (p < 0.05), indicating that high salinity was conducive to aerobic methane oxidation and that the genetic diversity at strain level endowed it with a certain denitrification potential. Salinity and SOM played important roles in shaping microbial community at phylum and genus levels. The gene abundances related to xenobiotics metabolism and repair were high in Zone A, whereas the genes encoding energy metabolism and signal transduction were relatively high in Zone B. Denitrification was more favored for the low-salinity Zone B, whereas methane oxidation was enriched in the high-salinity Zone A. Therefore, our study emphasized the importance of an in-depth understanding of the microbial-community structure and function in Phragmites australis-dominated saltwater and freshwater wetlands.

Garlic (Allium sativum) based interplanting alters the heavy metals absorption and bacterial diversity in neighboring plants

Heavy metals are naturally occurring elements that have a high atomic weight and let out in the environment by agriculture, industry, mining and therapeutic expertise and thrilling amassing of these elements pollutes the environment. In this study we have investigated the potential of garlic interplanting in promoting hyper accumulation and absorption of heavy metals to provide a basis for phytoremediation of polluted land. Monoculture and inter-plantation of garlic were conducted to investigate the absorption of cadmium and lead contamination in the land. A group of experiments with single planting (monoculture) of Lolium perenne, Conyza canadensis and Pteris vittata as accumulators were used. The results have shown that garlic has a potential as a hyper accumulate and absorb heavy metals. It was found that the accumulation of Cd and Pb was much higher with inter-planting. Garlic boosts up the absorption of heavy metals in Lolium perenne of Cd 66% and Pb 44% respectively. The Inter-planting of garlic with Pteris vittata promotes the Cd 26% and Pb 15%. While the maximum accumulation of Lead 87% and Cadmium 77% occurred in Conyza canadensis herb plant. The bacterial diversity in the soil was analyzed for each experimental soil and was found that the Proteobacteria, Acidobacteria, Actinobacteria, Firmicutes, and Planctomycetes were commonly abundant in both single planting (monoculture) of ryegrass and interplanting ryegrass with garlic habitats. Variances were observed in the bacterial floral composition of single (monoculture) and intercropping (interplant) soils. Relative abundance of bacterial taxa revealed that the proportion of Proteobacteria, Acidobacteria, and Actinobacteria in the inter-planting group was slightly higher, while Firmicutes and Planctomycetes were low. This study provides the evidence to control the heavy metals contaminated soils with weed species. Growth promotion and heavy metal uptake of neighboring plants proved the specific plant-plant and plant-microbial associations with garlic plants. This inter-planting strategy can be used to improve heavy metal absorption.

Microbial community responses to soil parameters and their effects on petroleum degradation during bio-electrokinetic remediation

This study evaluated the interactions among total petroleum hydrocarbons (TPH), soil parameters, and microbial communities during the bio-electrokinetic (BIO-EK) remediation process. The study was conducted on a petroleum-contaminated saline-alkali soil inoculated with petroleum-degrading bacteria with a high saline-alkali resistance. The results showed that the degradation of TPH was better explained by second-order kinetics, and the efficacy and sustainability of the BIO-EK were closely related to soil micro-environmental factors and microbial community structures. During a 98-d remediation process, the removal rate of TPH was highest in the first 35 d, and then decreased gradually in the later period, which was concurrent with changes in the soil physicochemical properties (conductivity, inorganic ions, pH, moisture, and temperature) and subsequent shifts in the microbial community structures. According to the redundancy analysis (RDA), TPH, soil temperature, and electric conductivity, as well as SO₄^2-, Cl^-, and K⁺ played a better role in explaining the changes in the microbial community at 0-21 d. However, pH and NO₃^- better explained the changes in the microbial community at 63-98 d. In particular, the dominant genera, Marinobacter and Bacillus, showed a positive correlation with TPH, conductivity, and SO₄^2-, Cl^-, and K⁺, but a negative relationship with pH and NO₃. Rhodococcus was positively correlated with soil temperature. The efficacy and sustainability of the BIO-EK remediation process is likely to be improved by controlling these properties.

Vegetation degradation impacts soil nutrients and enzyme activities in wet meadow on the Qinghai-Tibet Plateau

Vegetation degradation, due to climate change and human activities, changes the biomass, vegetation species composition, and soil nutrient input sources and thus affects soil nutrient cycling and enzyme activities. However, few studies have focused on the responses of soil nutrients and enzymes to vegetation degradation in high-altitude wet meadows. In this study, we examined the effects of vegetation degradation on soil nutrients (soil organic carbon, SOC; total nitrogen, TN; total phosphorus, TP) and enzyme activities (i.e., urease, catalase, amylase) in an alpine meadow in the eastern margin of the Qinghai-Tibet Plateau. Four different levels of degradation were defined in terms of vegetation density and composition: primary wet meadow (CK), lightly degraded (LD), moderately degraded (MD), and heavily degraded (HD). Soil samples were collected at depth intervals of 0–10, 10–20, 20–40, 40–60, 60–80, and 80–100 cm to determine soil nutrient levels and enzyme activities. The results showed that SOC, TN, catalase and amylase significantly decreased with degradation level, while TP and urease increased with degradation level (P < 0.05). Soil nutrient and enzyme activity significantly decreased with soil depth (P < 0.05), and the soil nutrient and enzyme activity exhibited obvious "surface aggregation". The activities of soil urease and catalase were strongest in spring and weakest in winter. The content of TN in spring, summer, and autumn was significantly higher than observed in winter (P < 0.05). The soil TP content increased in winter. Soil amylase activity was significantly higher in summerm than in spring, autumn, and winter (P < 0.05). TP was the main limiting factor for plant growth in the Gahai wet meadow. Values of SOC and TN were positively and significantly correlated with amylase and catalase (P < 0.05), but negatively correlated with urease (P < 0.05). These results suggest the significant role that vegetation degradation and seasonal freeze–thaw cycle play in regulating enzyme activities and nutrient availability in wet meadow soil.

Changes in soil carbon fractions and enzyme activities under different vegetation types of the northern Loess Plateau

Knowledge of the soil organic carbon components and enzyme activities during long-term natural vegetation restoration is essential for managing the restoration of vegetation. In this study, the variations of soil organic carbon components (i.e., soil organic carbon (SOC), microbial biomass carbon (MBC), easily oxidized carbon (EOC), particulate organic carbon (POC)) and enzyme activities (i.e., amylase, catalase, urease, and sucrase) were measured in four vegetation types: control (grasslands, GL), forest (Xanthoceras sorbifolia, XS), and shrublands (Hippophae rhamnoides, HR; Caragana korshinskii, CK). We found that vegetation types significantly affect soil organic carbon components and enzyme activities. The SOC content of the XS plot is higher than HR, CK, and GL by 88.43%, 117.09%, and 37.53% at the 0-20 cm layer; the soil SOC content of the XS plot is higher than HR and CK by 27.04% and 26.87%, and lower than GL 12.90% at the 20-40 cm layer. The highest POC and urease were observed in the XS plot at a depth of 0-20 cm, that is, 1.32 g/kg and 98.51 mg/kg, respectively. The highest EOC, amylase, and sucrase were observed in GL at a depth of 0-20 cm, that is, 5.44 g/kg, 39.23, and 607.62 mg/g. On the vertical section of the soil, the SOC fractions and the enzyme activities were greater in the upper layer than in the lower layer for each vegetation type except for MBC and catalase activity. Correlation analysis demonstrated that the SOC and POC content significantly influenced urease and sucrase activities and that MBC significantly influenced catalase activity. These results provide important information about SOC fractions and enzyme activities resulting from vegetation types in the Loess Plateau and also supplement our understanding of soil C sequestration in vegetation restoration.

Intensive land uses modify assembly process and potential metabolic function of edaphic bacterial communities in the Yellow River Delta, China

Coastal reclamation is a global threat to natural ecosystems, disturbing biological community structure, diversity and ecological function through habitat conversion. We have limited insights into the changes brought about by coastal reclamation for different land-use types. We used the Yellow River Delta (YRD) as a model because it is a region with intensive land reclamation, and we investigated the structural and functional variations of bacterial communities and their relations to edaphic properties under different land-use types. Our results showed that the high soil organic carbon (SOC), nitrate concentrations and salinity were found in oil field, aquaculture pond and salt pan, respectively, and low values in natural wetland. Land use was found to have significant influence on bacterial community diversity. To investigate the phylogenetic conservation of specific traits, we analyzed the relationship between soil bacterial assembly processes and edaphic properties. Bacterial traits phylogenetically conserved, and differs in depth. Our findings suggest that SOC served as a deep trait due to it negative correlation with deeper branches of phylogenetic clustering, while nitrate functioned as a shallow trait due to its positive correlation with phylogenetic clustering at finer branches. Soil salinity acted as a complex trait effected on both finer and deeper branches. Further potential functional gene co-occurrence network analysis revealed that land reclamation induced shifts of metabolic function by altering the functional gene connectivity. We found that the photosynthesis pathway was enriched in hub modules related to oil field (OF), while methane metabolism was enriched in hub modules linked to sea cucumber pond (CP1). In addition, two-component systems (TCS) were enriched with nitrate, ammonia, SOC and salinity-related modules. Therefore, our study highlights the importance of integrating multi-function and multi-process identification and prediction of coastal diverse reclamation impacts on coastal ecosystems.

Enrichment, Source Apportionment and Health Risk Assessment of Soil Potentially Harmful Elements Associated with Different Land Use in Coastal Tidelands Reclamation Area, Eastern China

Coastal tidelands are important ecological habitat resources and valuable resources for agricultural land reclamation. Enrichment of potentially harmful elements (PHEs) in soil caused by anthropogenic activity is an important factor implicated in the ecological deterioration of soil in China. A total of 54 soil sample sites were selected from a 30-year reclaimed tideland and an adjoining coastal wetland. Descriptive and multivariate statistical analyses were performed to describe the enrichment, source, health risk status of eight PHEs (As, Co, Cr, Cu, Mn, Ni, Pb, and Zn) after long-term reclamation. Results indicated that after 30 years of reclamation, most soil PHEs are slightly enriched, whereas no serious threat of environmental pollution was observed. In the reclamation area, the enrichment of PHEs in the aquaculture land, industrial land, and cropland was relatively high compared with other land use types, such as tideland and halophyte land. The source analysis divided the PHEs into five categories: (1) Cu; (2) Co and Mn; (3) Cr; (4) As and Pb; (5) Zn and Ni. Cu was completely derived from natural parent materials and other elements were governed by both weathering of parent rock and human activities, including agricultural activities, industrial production, and transportation emissions. The health risk assessment showed that the soil PHEs potentially had no non-carcinogenic risk to the public, but there was an acceptable probability to have cancer due to Cr and As. Meanwhile, children are more susceptible to harm from the PHEs in soil than adults. According to the economic and social development situation in the coastal region, it is necessary to pay attention to the environmental threats of PHEs enrichment.

Effect of phenanthrene on the biological characteristics of earthworm casts and their relationships with digestive and anti-oxidative systems

Earthworms as ecosystem engineers partially improve soil properties by egesting casts. Our previous study confirmed that soil pollution affects the physico-chemical properties of earthworm casts. It is still unclear whether the biological properties (e.g. cellulase, urease, and acid and alkaline phosphatase activities, as well as microbial biomass carbon) of casts are affected by foreign substances in soil. The present study aimed to investigate the effect of phenanthrene (PHE) on the biological characteristics of earthworm (Eisenia fetida) casts. Furthermore, correlations between cast properties and the digestive and antioxidant systems were explored by the determination of digestive enzyme (urease, protease, acid and alkaline phosphatase) activities, antioxidant indexes [superoxide dismutase (SOD), catalase (CAT), and peroxidase (POD)], as well as malondialdehyde (MDA) content. Exposure at a range of PHE doses (0, 2, 5, 10, and 20 mg kg^-1) for 15 d resulted in the following observations: (1) Compared with urease, as well as acid and alkaline phosphatase activities, cellulase activities in both soil and casts were sensitive to PHE, and could potentially act as biomarkers to provide early-warning signals for soil pollution. (2) Microbial biomass carbon in casts was modified, but with no clear pattern. (3) Cellulase and POD activities, as well as MDA content in earthworms, increased with elevated exposure to PHE in soil. Protease, SOD, and CAT activities exhibited a biphasic dose response to PHE, while acid and alkaline phosphatase activities were inhibited under treatment conditions. (4) Correlation analysis suggested that microbial biomass carbon in casts significantly and positively correlated with cellulase and acid phosphatase activities of earthworms, but negatively correlated with protease activities. A significant but weak negative correlation between alkaline phosphatase activities in casts and POD activities was also observed. Based on these results, we concluded that PHE content in soil modified some biological properties of casts, by partially affecting the earthworm's digestive and antioxidant systems. This study advances our knowledge of earthworm ecology in polluted soil by providing a better understanding of their ecological functions.

Determining the carrying capacity and environmental risks of livestock and poultry breeding in coastal areas of eastern China: an empirical model

The scale of regional livestock and poultry breeding (LPB) is generally not determined by the supporting capacity (fodder supply), but by the environmental carrying capacity of wastes from the LPB. The soil's own nutrient-supplying capacity used to be overlooked, which consequently produced an inaccurate result of carrying capacity estimation of the LPB. An empirical method was, therefore, employed to evaluate the soil's own nutrient-supplying capacity and further determine the carrying capacity and environmental risks of the LPB accurately. Thirteen counties along the coast of Jiangsu were selected to conduct this study, according to the framework of planting-breeding balance. Our results indicate that, including the soil's own nutrient-supplying capacity in the estimation of the carrying capacity of the LPB, it can reduce the original carrying capacity by 50%. This suggests that our empirical method can significantly increase the accuracy of estimating the carrying capacity of the LPB. The carrying capacity of the LPB in the study area varies from 1.5 to 48.08 pigs/hm², with a mean of 14 pigs/hm² based on phosphorus (P) balance. Furthermore, four sub-regions (Ganyu, Dongtai, Dafeng, and Guannan) that have a high P pollution risk should focus on controlling the scale of the LPB. The nitrogen (N) pollution risk in the study area is generally low. Results suggest that the soil's own nutrient-supplying capacity plays an important role in estimating the carrying capacity of the LPB accurately. This study can provide insights on reducing environmental risks of the LPB, which may be beneficial for decision makers.