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Becker CC, Weber L, Llopiz JK, Mooney TA, Apprill A. Microorganisms uniquely capture and predict stony coral tissue loss disease and hurricane disturbance impacts on US Virgin Island reefs. Environ Microbiol 2024; 26:e16610. [PMID: 38576217 DOI: 10.1111/1462-2920.16610] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Accepted: 03/01/2024] [Indexed: 04/06/2024]
Abstract
Coral reef ecosystems are now commonly affected by major climate and disease disturbances. Disturbance impacts are typically recorded using reef benthic cover, but this may be less reflective of other ecosystem processes. To explore the potential for reef water-based disturbance indicators, we conducted a 7-year time series on US Virgin Island reefs where we examined benthic cover and reef water nutrients and microorganisms from 2016 to 2022, which included two major disturbances: hurricanes Irma and Maria in 2017 and the stony coral tissue loss disease outbreak starting in 2020. The disease outbreak coincided with the largest changes in the benthic habitat, with increases in the percent cover of turf algae and Ramicrusta, an invasive alga. While sampling timepoint contributed most to changes in reef water nutrient composition and microbial community beta diversity, both disturbances led to increases in ammonium concentration, a mechanism likely contributing to observed microbial community shifts. We identified 10 microbial taxa that were sensitive and predictive of increasing ammonium concentration. This included the decline of the oligotrophic and photoautotrophic Prochlorococcus and the enrichment of heterotrophic taxa. As disturbances impact reefs, the changing nutrient and microbial regimes may foster a type of microbialization, a process that hastens reef degradation.
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Affiliation(s)
- Cynthia C Becker
- MIT-WHOI Joint Program in Oceanography/Applied Ocean Science and Engineering, Cambridge and Woods Hole, Massachusetts, USA
- Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
| | - Laura Weber
- Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
| | - Joel K Llopiz
- Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
| | - T Aran Mooney
- Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
| | - Amy Apprill
- Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
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2
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Becker CC, Weber L, Zgliczynski B, Sullivan C, Sandin S, Muller E, Clark AS, Kido Soule MC, Longnecker K, Kujawinski EB, Apprill A. Microorganisms and dissolved metabolites distinguish Florida's Coral Reef habitats. PNAS Nexus 2023; 2:pgad287. [PMID: 37719750 PMCID: PMC10504872 DOI: 10.1093/pnasnexus/pgad287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Accepted: 08/24/2023] [Indexed: 09/19/2023]
Abstract
As coral reef ecosystems experience unprecedented change, effective monitoring of reef features supports management, conservation, and intervention efforts. Omic techniques show promise in quantifying key components of reef ecosystems including dissolved metabolites and microorganisms that may serve as invisible sensors for reef ecosystem dynamics. Dissolved metabolites are released by reef organisms and transferred among microorganisms, acting as chemical currencies and contributing to nutrient cycling and signaling on reefs. Here, we applied four omic techniques (taxonomic microbiome via amplicon sequencing, functional microbiome via shotgun metagenomics, targeted metabolomics, and untargeted metabolomics) to waters overlying Florida's Coral Reef, as well as microbiome profiling on individual coral colonies from these reefs to understand how microbes and dissolved metabolites reflect biogeographical, benthic, and nutrient properties of this 500-km barrier reef. We show that the microbial and metabolite omic approaches each differentiated reef habitats based on geographic zone. Further, seawater microbiome profiling and targeted metabolomics were significantly related to more reef habitat characteristics, such as amount of hard and soft coral, compared to metagenomic sequencing and untargeted metabolomics. Across five coral species, microbiomes were also significantly related to reef zone, followed by species and disease status, suggesting that the geographic water circulation patterns in Florida also impact the microbiomes of reef builders. A combination of differential abundance and indicator species analyses revealed metabolite and microbial signatures of specific reef zones, which demonstrates the utility of these techniques to provide new insights into reef microbial and metabolite features that reflect broader ecosystem processes.
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Affiliation(s)
- Cynthia C Becker
- Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA
- Biological Oceanography, Massachusetts Institute of Technology-Woods Hole Oceanographic Institution Joint Program in Oceanography/Applied Ocean Science and Engineering,Cambridge, MA 02139, USA
| | - Laura Weber
- Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA
| | - Brian Zgliczynski
- Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, USA
| | - Chris Sullivan
- Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, USA
| | - Stuart Sandin
- Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, USA
| | - Erinn Muller
- Elizabeth Moore International Center for Coral Reef Research and Restoration, Mote Marine Laboratory, Summerland Key, FL 33042, USA
- Coral Health and Disease Program, Mote Marine Laboratory, Sarasota, FL 34236, USA
| | - Abigail S Clark
- Elizabeth Moore International Center for Coral Reef Research and Restoration, Mote Marine Laboratory, Summerland Key, FL 33042, USA
- Marine Science and Technology Department, The College of the Florida Keys, Key West, FL 33040, USA
| | - Melissa C Kido Soule
- Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA
| | - Krista Longnecker
- Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA
| | - Elizabeth B Kujawinski
- Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA
| | - Amy Apprill
- Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA
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3
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González-Barrios FJ, Estrada-Saldívar N, Pérez-Cervantes E, Secaira-Fajardo F, Álvarez-Filip L. Legacy effects of anthropogenic disturbances modulate dynamics in the world's coral reefs. Glob Chang Biol 2023; 29:3285-3303. [PMID: 36932916 DOI: 10.1111/gcb.16686] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Revised: 03/03/2023] [Accepted: 03/07/2023] [Indexed: 05/16/2023]
Abstract
Rapidly changing conditions alter disturbance patterns, highlighting the need to better understand how the transition from pulse disturbances to more persistent stress will impact ecosystem dynamics. We conducted a global analysis of the impacts of 11 types of disturbances on reef integrity using the rate of change of coral cover as a measure of damage. Then, we evaluated how the magnitude of the damage due to thermal stress, cyclones, and diseases varied among tropical Atlantic and Indo-Pacific reefs and whether the cumulative impact of thermal stress and cyclones was able to modulate the responses of reefs to future events. We found that reef damage largely depends on the condition of a reef before a disturbance, disturbance intensity, and biogeographic region, regardless of the type of disturbance. Changes in coral cover after thermal stress events were largely influenced by the cumulative stress of past disturbances and did not depend on disturbance intensity or initial coral cover, which suggests that an ecological memory is present within coral communities. In contrast, the effect of cyclones (and likely other physical impacts) was primarily modulated by the initial reef condition and did not appear to be influenced by previous impacts. Our findings also underscore that coral reefs can recover if stressful conditions decrease, yet the lack of action to reduce anthropogenic impacts and greenhouse gas emissions continues to trigger reef degradation. We uphold that evidence-based strategies can guide managers to make better decisions to prepare for future disturbances.
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Affiliation(s)
- F Javier González-Barrios
- Biodiversity and Reef Conservation Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Mexico
| | - Nuria Estrada-Saldívar
- Biodiversity and Reef Conservation Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Mexico
| | - Esmeralda Pérez-Cervantes
- Biodiversity and Reef Conservation Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Mexico
| | | | - Lorenzo Álvarez-Filip
- Biodiversity and Reef Conservation Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Mexico
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Voolstra CR, Peixoto RS, Ferrier-Pagès C. Mitigating the ecological collapse of coral reef ecosystems: Effective strategies to preserve coral reef ecosystems: Effective strategies to preserve coral reef ecosystems. EMBO Rep 2023; 24:e56826. [PMID: 36862379 PMCID: PMC10074092 DOI: 10.15252/embr.202356826] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Revised: 01/25/2023] [Accepted: 02/09/2023] [Indexed: 03/03/2023] Open
Abstract
Global warming is decimating coral reefs. We need to implement mitigation and restoration strategies now to prevent coral reefs from disappearing altogether.
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Affiliation(s)
| | - Raquel S Peixoto
- Red Sea Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
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5
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Srednick G, Davis K, Edmunds PJ. Asynchrony in coral community structure contributes to reef-scale community stability. Sci Rep 2023; 13:2314. [PMID: 36759628 PMCID: PMC9911750 DOI: 10.1038/s41598-023-28482-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Accepted: 01/19/2023] [Indexed: 02/11/2023] Open
Abstract
Many aspects of global ecosystem degradation are well known, but the ecological implications of variation in these effects over scales of kilometers and years have not been widely considered. On tropical coral reefs, kilometer-scale variation in environmental conditions promotes a spatial mosaic of coral communities in which spatial insurance effects could enhance community stability. To evaluate whether these effects are important on coral reefs, we explored variation over 2006-2019 in coral community structure and environmental conditions in Moorea, French Polynesia. We studied coral community structure at a single site with fringing, back reef, and fore reef habitats, and used this system to explore associations among community asynchrony, asynchrony of environmental conditions, and community stability. Coral community structure varied asynchronously among habitats, and variation among habitats in the daily range in seawater temperature suggested it could be a factor contributing to the variation in coral community structure. Wave forced seawater flow connected the habitats and facilitated larval exchange among them, but this effect differed in strength among years, and accentuated periodic connectivity among habitats at 1-7 year intervals. At this site, connected habitats harboring taxonomically similar coral assemblages and exhibiting asynchronous population dynamics can provide insurance against extirpation, and may promote community stability. If these effects apply at larger spatial scale, then among-habitat community asynchrony is likely to play an important role in determining reef-wide coral community resilience.
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Affiliation(s)
- G Srednick
- School of BioSciences, University of Melbourne, Parkville, VIC, Australia.
| | - K Davis
- Department of Civil & Environmental Engineering and Earth System Science, University of California, Irvine, USA
| | - P J Edmunds
- Department of Biology, California State University, 18111 Nordhoff Street, Northridge, CA, 91330-8303, USA
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Greer L, Curran HA, Wirth K, Humston R, Johnson G, McManus L, Stefanic C, Clark T, Lescinsky H, Forman-Castillo K. Coral Gardens Reef, Belize: An Acropora spp. refugium under threat in a warming world. PLoS One 2023; 18:e0280852. [PMID: 36753468 DOI: 10.1371/journal.pone.0280852] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Accepted: 01/09/2023] [Indexed: 02/09/2023] Open
Abstract
Live coral cover has declined precipitously on Caribbean reefs in recent decades. Acropora cervicornis coral has been particularly decimated, and few Western Atlantic Acropora spp. refugia remain. Coral Gardens, Belize, was identified in 2020 as a long-term refugium for this species. This study assesses changes in live A. cervicornis coral abundance over time at Coral Gardens to monitor the stability of A. cervicornis corals, and to explore potential threats to this important refugium. Live coral cover was documented annually from 2012-2019 along five permanent transects. In situ sea-surface temperature data were collected at Coral Gardens throughout the study period and compared with calibrated satellite data to calculate Maximum Monthly Mean (MMM) temperatures and Degree Heating Weeks (DHW). Data on bathymetry, sediment, substrate, herbivore abundance, and macroalgal abundance were collected in 2014 and 2019 to assess potential threats to Coral Gardens. Live coral cover declined at all five transect sites over the study period. The greatest loss of live coral occurred between 2016 and 2017, coincident with the earliest and highest maximum average temperatures recorded at the study site, and the passage of a hurricane in 2016. Structural storm damage was not observed at Coral Gardens, though live coral cover declined after the passage of the storm. Uranium-thorium (230Th) dating of 26 dead in situ fragments of A. cervicornis collected in 2015 from Coral Gardens revealed no correlation between coral mortality and tropical storms and hurricanes in the recent past. Our data suggest that several other common drivers for coral decline (i.e. herbivory, predation, sedimentation, pH) may likely be ruled out for Coral Gardens. At the end of the study period, Coral Gardens satisfied most criteria for refugium status. However, the early onset, higher mean, and longer duration of above-average temperatures, as well as intermittent temperature anomalies likely played a critical role in the stability of this refugium. We suggest that temperature stress in 2016 and perhaps 2015 may have increased coral tissue vulnerability at Coral Gardens to a passing hurricane, threatening the status of this unique refugium.
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7
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Rodriguez-Ruano V, Toth LT, Enochs IC, Randall CJ, Aronson RB. Upwelling, climate change, and the shifting geography of coral reef development. Sci Rep 2023; 13:1770. [PMID: 36750639 PMCID: PMC9905564 DOI: 10.1038/s41598-023-28489-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2023] [Accepted: 01/19/2023] [Indexed: 02/09/2023] Open
Abstract
The eastern tropical Pacific is oceanographically unfavorable for coral-reef development. Nevertheless, reefs have persisted there for the last 7000 years. Rates of vertical accretion during the Holocene have been similar in the strong-upwelling Gulf of Panamá (GoP) and the adjacent, weak-upwelling Gulf of Chiriquí (GoC); however, seasonal upwelling in the GoP exacerbated a climate-driven hiatus in reef development in the late Holocene. The situation is now reversed and seasonal upwelling in the GoP currently buffers thermal stress, creating a refuge for coral growth. We developed carbonate budget models to project the capacity of reefs in both gulfs to keep up with future sea-level rise. On average, the GoP had significantly higher net carbonate production rates than the GoC. With an estimated contemporary reef-accretion potential (RAP) of 5.5 mm year-1, reefs in the GoP are projected to be able to keep up with sea-level rise if CO2 emissions are reduced, but not under current emissions trajectories. With an estimated RAP of just 0.3 mm year-1, reefs in the GoC are likely already unable to keep up with contemporary sea-level rise in Panamá (1.4 mm year-1). Whereas the GoP has the potential to support functional reefs in the near-term, our study indicates that their long-term persistence will depend on reduction of greenhouse gases.
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Affiliation(s)
- Victor Rodriguez-Ruano
- Department of Ocean Engineering and Marine Sciences, Florida Institute of Technology, 150 West University Boulevard, Melbourne, FL, 32901, USA.
| | - Lauren T Toth
- U.S. Geological Survey, St. Petersburg Coastal and Marine Science Center, 600 4th St. South, St. Petersburg, FL, 33701, USA
| | - Ian C Enochs
- 3NOAA, Atlantic Oceanographic and Meteorological Laboratory, Ocean Chemistry and Ecosystem Division, 4301 Rickenbacker Cswy., Miami, FL, 33149, USA
| | - Carly J Randall
- Australian Institute of Marine Science, PMB No. 3, Townsville, QLD, 4810, Australia
| | - Richard B Aronson
- Department of Ocean Engineering and Marine Sciences, Florida Institute of Technology, 150 West University Boulevard, Melbourne, FL, 32901, USA
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Godefroid M, Dubois P, Hédouin L. Thermal performance with depth: Comparison of a mesophotic scleractinian and an antipatharian species subjected to internal waves in Mo'orea, French Polynesia. Mar Environ Res 2023; 184:105851. [PMID: 36603344 DOI: 10.1016/j.marenvres.2022.105851] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Revised: 12/13/2022] [Accepted: 12/17/2022] [Indexed: 06/17/2023]
Abstract
Local thermal environment has a strong influence on the physiology of marine ectotherms. This is particularly relevant for tropical organisms living close to their thermal optimum, well exemplified by the increasing frequency of bleaching occurrence in shallow-water corals. Mesophotic Coral Ecosystems (MCEs) were suggested as potential oases, especially when they are submitted to internal waves inducing short-term cooling events. Indeed, probability of bleaching occurrence in scleractinians was reported to decrease with depth in Mo'orea as temperature variability increases. However, ecophysiological data are currently lacking to understand the cause of lower susceptibility/increased plasticity of deeper corals. A growing interest has been devoted the last decade to MCEs, but our understanding of the physiological performance of benthic organisms living in this environment remains relatively unexplored. To tackle that question, we first compared the metabolic responses (dark respiration, net photosynthesis and photosynthetic efficiency) of the depth-generalist scleractinian Pachyseris speciosa from two heterogeneous thermal environment (25 and 85 m depths) to acute heat stress to determine if the local thermal environment could predict coral response to warming. Then, we tested the thermal performance of two sympatric species (the scleractinian P. speciosa and the antipatharian Stichopathes sp.) to determine if there are inter-species differences in performances in species experiencing identical levels of temperature variability, at mesophotic depths (85 m). Results revealed broader thermal performances in the mesophotic P. speciosa compared to mid-depth ones, and constrained performances in the mesophotic antipatharian compared to the scleractinian species. We hypothesize that the high fluctuations in temperature due to internal waves in deeper areas contribute to the broader thermal performances of mesophotic P. speciosa. However, the constrained performances of the mesophotic antipatharian compared to P. speciosa suggests that other processes than the symbiosis with zooxanthellae also influence thermal performances of these mesophotic organisms. Our results supported that Stichopathes sp. lives close to its thermal optimum, suggesting a (relatively) cold thermal specialist strategy. In this context, composition of MCEs in the future is unlikely to shift to antipatharian-dominated landscape and will remain coral-dominated landscape.
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Affiliation(s)
- Mathilde Godefroid
- Laboratoire de Biologie Marine, Université Libre de Bruxelles, Avenue F.D. Roosevelt 50, CP160/15, 1050, Bruxelles, Belgium.
| | - Philippe Dubois
- Laboratoire de Biologie Marine, Université Libre de Bruxelles, Avenue F.D. Roosevelt 50, CP160/15, 1050, Bruxelles, Belgium
| | - Laetitia Hédouin
- PSL Research University: EPHE-CNRS-UPVD, USR 3278 CRIOBE, BP 1013, 98729, Papetoai, Mo'orea, French Polynesia; Laboratoire D'Excellence CORAIL, Mo'orea, French Polynesia
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Elahi R, Edmunds PJ, Gates RD, Kuffner IB, Barnes BB, Chollett I, Courtney TA, Guest JR, Lenz EA, Toth LT, Viehman TS, Williams ID. Scale dependence of coral reef oases and their environmental correlates. Ecol Appl 2022; 32:e2651. [PMID: 35538862 PMCID: PMC9787915 DOI: 10.1002/eap.2651] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Accepted: 02/09/2022] [Indexed: 05/22/2023]
Abstract
Identifying relatively intact areas within ecosystems and determining the conditions favoring their existence is necessary for effective management in the context of widespread environmental degradation. In this study, we used 3766 surveys of randomly selected sites in the United States and U.S. Territories to identify the correlates of sites categorized as "oases" (defined as sites with relatively high total coral cover). We used occupancy models to evaluate the influence of 10 environmental predictors on the probability that an area (21.2-km2 cell) would harbor coral oases defined at four spatial extents: cross-basin, basin, region, and subregion. Across all four spatial extents, oases were more likely to occur in habitats with high light attenuation. The influence of the other environmental predictors on the probability of oasis occurrence were less consistent and varied with the scale of observation. Oases were most likely in areas of low human population density, but this effect was evident only at the cross-basin and subregional extents. At the regional and subregional extents oases were more likely where sea-surface temperature was more variable, whereas at the larger spatial extents the opposite was true. By identifying the correlates of oasis occurrence, the model can inform the prioritization of reef areas for management. Areas with biophysical conditions that confer corals with physiological resilience, as well as limited human impacts, likely support coral reef oases across spatial extents. Our approach is widely applicable to the development of conservation strategies to protect biodiversity and ecosystems in an era of magnified human disturbance.
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Affiliation(s)
- Robin Elahi
- Hopkins Marine StationStanford UniversityPacific GroveCaliforniaUSA
| | - Peter J. Edmunds
- Department of BiologyCalifornia State UniversityNorthridgeCaliforniaUSA
| | - Ruth D. Gates
- Hawaiʻi Institute of Marine BiologyUniversity of Hawaiʻi at MānoaKāneʻoheHawaiiUSA
| | - Ilsa B. Kuffner
- U.S. Geological SurveySt. Petersburg Coastal and Marine Science CenterSt. PetersburgFloridaUSA
| | - Brian B. Barnes
- College of Marine ScienceUniversity of South FloridaSt. PetersburgFloridaUSA
| | | | - Travis A. Courtney
- Scripps Institution of OceanographyUniversity of California San DiegoLa JollaCaliforniaUSA
- Department of Marine SciencesUniversity of Puerto Rico MayagüezMayagüezPuerto RicoUSA
| | - James R. Guest
- School of Natural and Environmental SciencesNewcastle UniversityNewcastle upon TyneUK
| | - Elizabeth A. Lenz
- University of Hawaiʻi Sea Grant College ProgramUniversity of Hawaiʻi at MānoaHonoluluHawaiiUSA
| | - Lauren T. Toth
- U.S. Geological SurveySt. Petersburg Coastal and Marine Science CenterSt. PetersburgFloridaUSA
| | - T. Shay Viehman
- National Centers for Coastal Ocean ScienceNational Ocean Service, National Oceanic and Atmospheric AdministrationBeaufortNorth CarolinaUSA
| | - Ivor D. Williams
- Pacific Islands Fisheries Science CenterNational Oceanic and Atmospheric AdministrationHonoluluHawaiiUSA
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Toth LT, Courtney TA, Colella MA, Kupfner Johnson SA, Ruzicka RR. The past, present, and future of coral reef growth in the Florida Keys. Glob Chang Biol 2022; 28:5294-5309. [PMID: 35789026 PMCID: PMC9542952 DOI: 10.1111/gcb.16295] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Revised: 04/22/2022] [Accepted: 05/26/2022] [Indexed: 05/06/2023]
Abstract
Coral-reef degradation is driving global-scale reductions in reef-building capacity and the ecological, geological, and socioeconomic functions it supports. The persistence of those essential functions will depend on whether coral-reef management is able to rebalance the competing processes of reef accretion and erosion. Here, we reconstructed census-based carbonate budgets of 46 reefs throughout the Florida Keys from 1996 to 2019. We evaluated the environmental and ecological drivers of changing budget states and compared historical trends in reef-accretion potential to millennial-scale baselines of accretion from reef cores and future projections with coral restoration. We found that historically, most reefs had positive carbonate budgets, and many had reef-accretion potential comparable to the ~3 mm year-1 average accretion rate during the peak of regional reef building ~7000 years ago; however, declines in reef-building Acropora palmata and Orbicella spp. corals following a series of thermal stress events and coral disease outbreaks resulted in a shift from positive to negative budgets for most reefs in the region. By 2019, only ~15% of reefs had positive net carbonate production. Most of those reefs were in inshore, Lower Keys patch-reef habitats with low water clarity, supporting the hypothesis that environments with naturally low irradiance may provide a refugia from thermal stress. We caution that our estimated carbonate budgets are likely overly optimistic; comparison of reef-accretion potential to measured accretion from reef cores suggests that, by not accounting for the role of nonbiological physical and chemical erosion, census-based carbonate budgets may underestimate total erosion by ~1 mm year-1 (-1.15 kg CaCO3 m-2 year-1 ). Although the present state of Florida's reefs is dire, we demonstrate that the restoration of reef-building corals has the potential to help mitigate declines in reef accretion in some locations, which could allow some key ecosystem functions to be maintained until the threat of global climate change is addressed.
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Affiliation(s)
- Lauren T. Toth
- U.S. Geological SurveySt. Petersburg Coastal and Marine Science CenterSt. PetersburgFloridaUSA
| | - Travis A. Courtney
- Scripps Institution of OceanographyUniversity of California San DiegoLa JollaCaliforniaUSA
- Department of Marine SciencesUniversity of Puerto Rico MayagüezMayagüezPuerto Rico
| | - Michael A. Colella
- Fish & Wildlife Research Institute, Florida Fish & Wildlife Conservation CommissionSt. PetersburgFloridaUSA
| | | | - Robert R. Ruzicka
- Fish & Wildlife Research Institute, Florida Fish & Wildlife Conservation CommissionSt. PetersburgFloridaUSA
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11
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Mumby PJ, Chaloupka M, Bozec Y, Steneck RS, Montero‐Serra I. Revisiting the evidentiary basis for ecological cascades with conservation impacts. Conserv Lett 2021. [DOI: 10.1111/conl.12847] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
Affiliation(s)
- Peter J. Mumby
- Marine Spatial Ecology Lab, School of Biological Sciences The University of Queensland St. Lucia Queensland Australia
| | - Milani Chaloupka
- Marine Spatial Ecology Lab, School of Biological Sciences The University of Queensland St. Lucia Queensland Australia
| | - Yves‐Marie Bozec
- Marine Spatial Ecology Lab, School of Biological Sciences The University of Queensland St. Lucia Queensland Australia
| | - Robert S. Steneck
- Darling Marine Center, School of Marine Sciences University of Maine Walpole Maine USA
| | - Ignasi Montero‐Serra
- Marine Spatial Ecology Lab, School of Biological Sciences The University of Queensland St. Lucia Queensland Australia
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Abstract
The Great Barrier Reef has become one of the latest casualties of the climate crisis, suffering mass coral mortalities following three marine heat waves since 2016. Two new papers untangle the cumulative effects of these disturbances on the reef's resilience.
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Affiliation(s)
- James Guest
- School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne NE1 7RU, UK.
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Ward SG, Menges ES, Charton KT, Gonsiska PA, Peterson CL. Using demographic findings to compare wild and translocated populations of Florida goldenaster (
Chrysopsis floridana
) in west‐central Florida, U.S.A. Restor Ecol 2021. [DOI: 10.1111/rec.13577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Scott G. Ward
- Plant Ecology Program Archbold Biological Station Venus FL 33960 U.S.A
| | - Eric S. Menges
- Plant Ecology Program Archbold Biological Station Venus FL 33960 U.S.A
| | - Katherine T. Charton
- Department of Integrative Biology University of Wisconsin Madison WI 53706 U.S.A
| | | | - Cheryl L. Peterson
- Rare Plant Conservation Program Bok Tower Gardens Lake Wales FL 33853 U.S.A
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de Palmas S, Soto D, Ho MJ, Denis V, Chen CA. Strong horizontal and vertical connectivity in the coral Pocillopora verrucosa from Ludao, Taiwan, a small oceanic island. PLoS One 2021; 16:e0258181. [PMID: 34634065 PMCID: PMC8504772 DOI: 10.1371/journal.pone.0258181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2021] [Accepted: 09/22/2021] [Indexed: 12/01/2022] Open
Abstract
Mesophotic habitats could be sheltered from natural and anthropogenic disturbances and act as reproductive refuges, providing propagules to replenish shallower populations. Molecular markers can be used as proxies evaluating the connectivity and inferring population structure and larval dispersal. This study characterizes population structure as well as horizontal and vertical genetic connectivity of the broadcasting coral Pocillopora verrucosa from Ludao, a small oceanic island off the eastern coast of Taiwan. We genotyped 75 P. verrucosa specimens from three sites (Gongguan, Dabaisha, and Guiwan) at three depth ranges (Shallow: 7-15 m, Mid-depth: 23-30 m, and Deep: 38-45 m), spanning shallow to upper mesophotic coral reefs, with eight microsatellite markers. F-statistics showed a moderate differentiation (FST = 0.106, p<0.05) between two adjacent locations (Dabaisha 23-30 and Dabaisha 38-45 m), but no differentiation elsewhere, suggesting high levels of connectivity among sites and depths. STRUCTURE analysis showed no genetic clustering among sites or depths, indicating that all Pocillopora individuals could be drawn from a single panmictic population. Simulations of recent migration assigned 30 individuals (40%) to a different location from where they were collected. Among them, 1/3 were assigned to deeper locations, 1/3 to shallower populations and 1/3 were assigned to the right depth but a different site. These results suggest high levels of vertical and horizontal connectivity, which could enhance the recovery of P. verrucosa following disturbances around Ludao, a feature that agrees with demographic studies portraying this species as an opportunistic scleractinian.
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Affiliation(s)
- Stéphane de Palmas
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
- Department of Life Science, National Taiwan Normal University, Taipei, Taiwan
- Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and National Taiwan Normal University, Taipei, Taiwan
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | - Derek Soto
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
- Department of Life Science, National Taiwan Normal University, Taipei, Taiwan
- Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and National Taiwan Normal University, Taipei, Taiwan
| | - Ming-Jay Ho
- Green Island Marine Research Station, Marine Science Thematic Centre, Biodiversity Research Center, Academia Sinica, Green Island, Taitung, Taiwan
| | - Vianney Denis
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | - Chaolun Allen Chen
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
- Department of Life Science, National Taiwan Normal University, Taipei, Taiwan
- Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and National Taiwan Normal University, Taipei, Taiwan
- Department of Life Sciences, Tunghai University, Taichung, Taiwan
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15
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Ferrari R, Lachs L, Pygas DR, Humanes A, Sommer B, Figueira WF, Edwards AJ, Bythell JC, Guest JR. Photogrammetry as a tool to improve ecosystem restoration. Trends Ecol Evol 2021; 36:1093-1101. [PMID: 34404550 DOI: 10.1016/j.tree.2021.07.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Revised: 06/08/2021] [Accepted: 07/08/2021] [Indexed: 10/20/2022]
Abstract
Ecosystem restoration has been practiced for over a century and is increasingly supported by the emergent applied science of restoration ecology. A prerequisite for successful ecosystem restoration is determining meaningful and measurable goals. This requires tools to monitor success in a standardized way. Photogrammetry uses images to reconstruct landscapes and organisms in three dimensions, enabling non-invasive measurement of key success indicators with unprecedented accuracy. We propose photogrammetry can improve restoration success by: (i) facilitating measurable goals; (ii) innovating and standardizing indicators of success; and (iii) standardizing monitoring. While the case we present is specific to coral reefs, photogrammetry has enormous potential to improve restoration practice in a wide range of ecosystems.
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Affiliation(s)
- Renata Ferrari
- Australian Institute of Marine Sciences, Townsville, QLD 4810, Australia.
| | - Liam Lachs
- School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK
| | - Daniel R Pygas
- School of Life and Environmental Sciences, University of Sydney, Sydney, NSW 2006, Australia
| | - Adriana Humanes
- School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK
| | - Brigitte Sommer
- School of Life and Environmental Sciences, University of Sydney, Sydney, NSW 2006, Australia; School of Life Sciences, University of Technology Sydney, Sydney, NSW 2007, Australia
| | - Will F Figueira
- School of Life and Environmental Sciences, University of Sydney, Sydney, NSW 2006, Australia
| | - Alasdair J Edwards
- School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK
| | - John C Bythell
- School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK
| | - James R Guest
- School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK
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16
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Abstract
Recruitment hotspots are locations where organisms are added to populations at high rates. On tropical reefs where coral abundance has declined, recruitment hotspots are important because they have the potential to promote population recovery. Around St. John, US Virgin Islands, coral recruitment at five sites revealed a hotspot that has persistent for 14 years. Recruitment created a hotspot in density of juvenile corals that was 600 m southeast of the recruitment hotspot. Neither hotspot led to increased coral cover, thus revealing the stringency of the demographic bottleneck impeding progression of recruits to adult sizes and preventing population growth. Recruitment hotspots in low-density coral populations are valuable targets for conservation and sources of corals for restoration.
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Affiliation(s)
- Peter J. Edmunds
- Department of Biology, California State University, 18111 Nordhoff Street, Northridge, CA 91330-8303, USA
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17
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Ng CSL, Chan YKS, Nguyen NTH, Kikuzawa YP, Sam SQ, Toh TC, Mock AYJ, Chou LM, Huang D. Coral community composition and carbonate production in an urbanized seascape. Mar Environ Res 2021; 168:105322. [PMID: 33857701 DOI: 10.1016/j.marenvres.2021.105322] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Revised: 03/12/2021] [Accepted: 03/25/2021] [Indexed: 06/12/2023]
Abstract
Coastal urbanization causes environmental modifications that directly and indirectly influence the distribution and functioning of coral reefs. However, the capacity of urban infrastructure to support corals and vertically accrete is less understood. Here, we investigated if coral communities on reefs and seawalls in Singapore are distinct, and examined the environmental variables influencing coral carbonate production. Surveys at 22 sites yielded 134 coral species, with richness significantly higher on reefs. Coral cover and Shannon index did not differ between habitat types. Community composition was distinct between habitat types, with seawalls supporting a higher proportion of massive and thick-plating species. 'Distance from mainland' was the single most important variable influencing normalized carbonate production rates (a function of species-specific linear extension rate and skeletal bulk density and site coral cover), which were higher further from the mainland where human activity and development pressures were greater. Our results indicate that environmental filtering strongly shapes coral communities and may influence ecosystem functioning in Singapore's urbanized reef system. The findings will guide the management of reefs on increasingly urbanized coastlines.
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Affiliation(s)
- Chin Soon Lionel Ng
- Department of Biological Sciences, National University of Singapore, 16 Science Drive 4, 117558, Singapore; Tropical Marine Science Institute, National University of Singapore, 14 Kent Ridge Road, 119223, Singapore.
| | - Yong Kit Samuel Chan
- Department of Biological Sciences, National University of Singapore, 16 Science Drive 4, 117558, Singapore
| | - Nhung Thi Hong Nguyen
- Department of Biological Sciences, National University of Singapore, 16 Science Drive 4, 117558, Singapore
| | - Yuichi Preslie Kikuzawa
- Tropical Marine Science Institute, National University of Singapore, 14 Kent Ridge Road, 119223, Singapore
| | - Shu Qin Sam
- Tropical Marine Science Institute, National University of Singapore, 14 Kent Ridge Road, 119223, Singapore
| | - Tai Chong Toh
- Tropical Marine Science Institute, National University of Singapore, 14 Kent Ridge Road, 119223, Singapore; College of Alice and Peter Tan, National University of Singapore, 8 College Avenue East, 138615, Singapore
| | - Aidan Yong Jie Mock
- Yale-NUS College, Environmental Studies, National University of Singapore, 16 College Avenue West, 138527, Singapore
| | - Loke Ming Chou
- Department of Biological Sciences, National University of Singapore, 16 Science Drive 4, 117558, Singapore; Tropical Marine Science Institute, National University of Singapore, 14 Kent Ridge Road, 119223, Singapore
| | - Danwei Huang
- Department of Biological Sciences, National University of Singapore, 16 Science Drive 4, 117558, Singapore; Tropical Marine Science Institute, National University of Singapore, 14 Kent Ridge Road, 119223, Singapore; Centre for Nature-based Climate Solutions, National University of Singapore, 16 Science Drive 4, 117558, Singapore
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18
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Affiliation(s)
- Peter J. Edmunds
- Department of Biology California State University 18111 Nordhoff Street Northridge California91330USA
| | - Craig Didden
- Viewpoint School 23620 Mulholland Highway Calabasas California91302USA
| | - Karl Frank
- Campbell Hall School 4533 Laurel Canyon Boulevard Studio City California91607USA
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Greer L, Clark T, Waggoner T, Busch J, Guilderson TP, Wirth K, Zhao JX, Curran HA. Coral Gardens Reef, Belize: A refugium in the face of Caribbean-wide Acropora spp. coral decline. PLoS One 2020; 15:e0239267. [PMID: 32997690 DOI: 10.1371/journal.pone.0239267] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Accepted: 09/02/2020] [Indexed: 12/26/2022] Open
Abstract
Caribbean Acropora spp. corals have undergone a decline in cover since the second half of the twentieth century. Loss of these architecturally complex and fast-growing corals has resulted in significant, cascading changes to the character, diversity, and available eco-spaces of Caribbean reefs. Few thriving Acropora spp. populations exist today in the Caribbean and western North Atlantic seas, and our limited ability to access data from reefs assessed via long-term monitoring efforts means that reef scientists are challenged to determine resilience and longevity of existing Acropora spp. reefs. Here we used multiple dating methods to measure reef longevity and determine whether Coral Gardens Reef, Belize, is a refuge for Acropora cervicornis against the backdrop of wider Caribbean decline. We used a new genetic-aging technique to identify sample sites, and radiocarbon and high-precision uranium-thorium (U-Th) dating techniques to test whether one of the largest populations of extant A. cervicornis in the western Caribbean is newly established after the 1980s, or represents a longer-lived, stable population. We did so with respect for ethical sampling of a threatened species. Our data show corals ranging in age from 1910 (14C) or 1915 (230Th) to at least November 2019. While we cannot exclude the possibility of short gaps in the residence of A. cervicornis earlier in the record, the data show consistent and sustained living coral throughout the 1980s and up to at least 2019. We suggest that Coral Gardens has served as a refuge for A. cervicornis and that identifying other, similar sites may be critical to efforts to grow, preserve, conserve, and seed besieged Caribbean reefs.
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20
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Zoccola D, Ounais N, Barthelemy D, Calcagno R, Gaill F, Henard S, Hoegh-Guldberg O, Janse M, Jaubert J, Putnam H, Salvat B, Voolstra CR, Allemand D. The World Coral Conservatory (WCC): A Noah's ark for corals to support survival of reef ecosystems. PLoS Biol 2020; 18:e3000823. [PMID: 32925901 DOI: 10.1371/journal.pbio.3000823] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Revised: 10/01/2020] [Indexed: 12/15/2022] Open
Abstract
Global change causes widespread decline of coral reefs. In order to counter the anticipated disappearance of coral reefs by the end of this century, many initiatives are emerging, including creation of marine protected areas (MPAs), reef restoration projects, and assisted evolution initiatives. Such efforts, although critically important, are locally constrained. We propose to build a “Noah's Ark” biological repository for corals that taps into the network of the world’s public aquaria and coral reef scientists. Public aquaria will serve not only as a reservoir for the purpose of conservation, restoration, and research of reef-building corals but also as a laboratory for the implementation of operations for the selection of stress-resilient and resistant genotypes. The proposed project will provide a global dimension to coral reef education and protection as a result of the involvement of a network of public and private aquaria. Global change is causing a widespread decline in coral reefs. This Community Page article proposes to build the World Coral Conservatory, a “Noah's Ark” biological repository that taps into the network of the world’s public aquaria and coral reef scientists, in order to preserve the fast-disappearing biodiversity of coral reefs.
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21
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Abstract
As carbon dioxide (CO2) levels increase, coral reefs and other marine systems will be affected by the joint stressors of ocean acidification (OA) and warming. The effects of these two stressors on coral physiology are relatively well studied, but their impact on biotic interactions between corals are poorly understood. While coral-coral interactions are less common on modern reefs, it is important to document the nature of these interactions to better inform restoration strategies in the face of climate change. Using a mesocosm study, we evaluated whether the combined effects of ocean acidification and warming alter the competitive interactions between the common coral Porites astreoides and two other mounding corals (Montastraea cavernosa or Orbicella faveolata) common in the Caribbean. After 7 days of direct contact, P. astreoides suppressed the photosynthetic potential of M. cavernosa by 100% in areas of contact under both present (~28.5°C and ~400 μatm pCO2) and predicted future (~30.0°C and ~1000 μatm pCO2) conditions. In contrast, under present conditions M. cavernosa reduced the photosynthetic potential of P. astreoides by only 38% in areas of contact, while under future conditions reduction was 100%. A similar pattern occurred between P. astreoides and O. faveolata at day 7 post contact, but by day 14, each coral had reduced the photosynthetic potential of the other by 100% at the point of contact, and O. faveolata was generating larger lesions on P. astreoides than the reverse. In the absence of competition, OA and warming did not affect the photosynthetic potential of any coral. These results suggest that OA and warming can alter the severity of initial coral-coral interactions, with potential cascading effects due to corals serving as foundation species on coral reefs.
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Affiliation(s)
- Nicole K. Johnston
- School of Biological Sciences and Aquatic Chemical Ecology Center, Georgia Institute of Technology, Atlanta, GA, United States of America
- * E-mail:
| | - Justin E. Campbell
- Department of Biological Sciences, Institute of Environment, Florida International University, North Miami, FL, United States of America
- Smithsonian Marine Station, Ft. Pierce, FL, United States of America
| | - Valerie J. Paul
- Smithsonian Marine Station, Ft. Pierce, FL, United States of America
| | - Mark E. Hay
- School of Biological Sciences and Aquatic Chemical Ecology Center, Georgia Institute of Technology, Atlanta, GA, United States of America
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22
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Courtney TA, Barnes BB, Chollett I, Elahi R, Gross K, Guest JR, Kuffner IB, Lenz EA, Nelson HR, Rogers CS, Toth LT, Andersson AJ. Disturbances drive changes in coral community assemblages and coral calcification capacity. Ecosphere 2020. [DOI: 10.1002/ecs2.3066] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Affiliation(s)
- Travis A. Courtney
- Scripps Institution of Oceanography University of California San Diego La Jolla California 92093 USA
| | - Brian B. Barnes
- College of Marine Science University of South Florida St. Petersburg Florida 33701 USA
| | | | - Robin Elahi
- Hopkins Marine Station Stanford University Pacific Grove California 93950 USA
| | - Kevin Gross
- Department of Statistics North Carolina State University Raleigh North Carolina 27695 USA
| | - James R. Guest
- School of Natural and Environmental Sciences Newcastle University Newcastle upon Tyne NE17RU UK
| | - Ilsa B. Kuffner
- U.S. Geological Survey, St. Petersburg Coastal and Marine Science Center St. Petersburg Florida 33701 USA
| | - Elizabeth A. Lenz
- Hawai'i Institute of Marine Biology University of Hawai'i Kāne'ohe Hawai'i 96744 USA
| | - Hannah R. Nelson
- Department of Biology California State University Northridge California 91330 USA
| | - Caroline S. Rogers
- U.S. Geological Survey, Wetland and Aquatic Research Center St John U.S. Virgin Islands USA
| | - Lauren T. Toth
- U.S. Geological Survey, St. Petersburg Coastal and Marine Science Center St. Petersburg Florida 33701 USA
| | - Andreas J. Andersson
- Scripps Institution of Oceanography University of California San Diego La Jolla California 92093 USA
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23
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24
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O'Dea A, Lepore M, Altieri AH, Chan M, Morales-Saldaña JM, Muñoz NH, Pandolfi JM, Toscano MA, Zhao JX, Dillon EM. Defining variation in pre-human ecosystems can guide conservation: An example from a Caribbean coral reef. Sci Rep 2020; 10:2922. [PMID: 32075992 PMCID: PMC7031243 DOI: 10.1038/s41598-020-59436-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2019] [Accepted: 01/16/2020] [Indexed: 11/17/2022] Open
Abstract
Many Caribbean coral reefs are heavily degraded, yet their pre-human, natural states are often assumed or estimated using space-for-time substitution approaches. Here we use an 11-hectare suite of fossilised mid-Holocene (7.2-5.6 ka) fringing reefs in Caribbean Panama to define natural variation in hard coral community structure before human-impact to provide context to the states of the same reefs today. We collected bulk samples from four trenches dug into the mid-Holocene fossil reef and surficial bulk samples from 2-10 m depths on five adjacent modern reefs extending over 5 km. Analysis of the abundances of coral taxa in fossil bulk samples define the Historical Range of Variation (HRV) in community structure of the reefs. When compared to the community structure of adjacent modern reefs, we find that most coral communities today fall outside the HRV, identifying them as novel ecosystems and corroborating the well-documented transition from acroporid-dominated Caribbean reefs to reefs dominated by stress-tolerant taxa (Porites and Agaricia). We find one modern reef, however, whose community composition remains within the HRV showing that it has not transitioned to a novel state. Reef-matrix cores extracted from this reef reveal that the coral community has remained in this state for over 800 years, suggesting long-term stability and resistance to the region-wide shift to novel states. Without these data to provide historical context, this potentially robust and stable reef would be overlooked since it does not fulfil expectations of what a Caribbean coral reef should look like in the absence of humans. This example illustrates how defining past variation using the fossil record can improve our understanding of modern degradation and guide conservation.
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Affiliation(s)
- Aaron O'Dea
- Smithsonian Tropical Research Institute, Box 0843-03092, Balboa, Republic of Panama.
- Department of Biological, Geological and Environmental Sciences, University of Bologna, Piazza Porta San Donato 1, 40126, Bologna, Italy.
| | - Mauro Lepore
- Smithsonian Tropical Research Institute, Box 0843-03092, Balboa, Republic of Panama
| | - Andrew H Altieri
- Smithsonian Tropical Research Institute, Box 0843-03092, Balboa, Republic of Panama
- Department of Environmental Engineering Sciences, University of Florida, Gainesville, FL, 32611, USA
| | - Melisa Chan
- Smithsonian Tropical Research Institute, Box 0843-03092, Balboa, Republic of Panama
| | | | - Nicte-Ha Muñoz
- Smithsonian Tropical Research Institute, Box 0843-03092, Balboa, Republic of Panama
| | - John M Pandolfi
- Australian Research Council Centre of Excellence for Coral Reef Studies, School of Biological Sciences, University of Queensland, St. Lucia, Queensland, 4072, Australia
| | - Marguerite A Toscano
- Smithsonian Environmental Research Center, 647 Contees Wharf Road, Edgewater, Maryland, 21037, USA
| | - Jian-Xin Zhao
- School of Earth & Environmental Sciences, University of Queensland, St. Lucia, Queensland, 4072, Australia
| | - Erin M Dillon
- Smithsonian Tropical Research Institute, Box 0843-03092, Balboa, Republic of Panama
- Department of Ecology, Evolution and Marine Biology and the Marine Science Institute, University of California, Santa Barbara, CA, 93106, USA
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25
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Abstract
Globally increasing sea surface temperatures threaten coral reefs, both directly and through interactions with local stressors. More resilient reefs have a higher likelihood of returning to a coral-dominated state following a disturbance, such as a mass bleaching event. To advance practical approaches to reef resilience assessments and aid resilience-based management of coral reefs, we conducted a resilience assessment for Puerto Rico's coral reefs, modified from methods used in other U.S. jurisdictions. We calculated relative resilience scores for 103 sites from an existing commonwealth-wide survey using eight resilience indicators-such as coral diversity, macroalgae percent cover, and herbivorous fish biomass-and assessed which indicators most drove resilience. We found that sites of very different relative resilience were generally highly spatially intermixed, underscoring the importance and necessity of decision making and management at fine scales. In combination with information on levels of two localized stressors (fishing pressure and pollution exposure), we used the resilience indicators to assess which of seven potential management actions could be used at each site to maintain or improve resilience. Fishery management was the management action that applied to the most sites. Furthermore, we combined sites' resilience scores with projected ocean warming to assign sites to vulnerability categories. Island-wide or community-level managers can use the actions and vulnerability information as a starting point for resilience-based management of their reefs. This assessment differs from many previous ones because we tested how much information could be yielded by a "desktop" assessment using freely-available, existing data rather than from a customized, resilience-focused field survey. The available data still permitted analyses comparable to previous assessments, demonstrating that desktop resilience assessments can substitute for assessments with field components under some circumstances.
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Affiliation(s)
- David A. Gibbs
- Oak Ridge Institute for Science Education fellow at U.S. Environmental Protection Agency, Washington, D.C., United States of America
- * E-mail:
| | - Jordan M. West
- U.S. Environmental Protection Agency, Office of Research and Development, Washington, D.C., United States of America
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26
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Estrada-Saldívar N, Jordán-Dalhgren E, Rodríguez-Martínez RE, Perry C, Alvarez-Filip L. Functional consequences of the long-term decline of reef-building corals in the Caribbean: evidence of across-reef functional convergence. R Soc Open Sci 2019; 6:190298. [PMID: 31824686 PMCID: PMC6837220 DOI: 10.1098/rsos.190298] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2019] [Accepted: 09/23/2019] [Indexed: 05/22/2023]
Abstract
Functional integrity on coral reefs is strongly dependent upon coral cover and coral carbonate production rate being sufficient to maintain three-dimensional reef structures. Increasing environmental and anthropogenic pressures in recent decades have reduced the cover of key reef-building species, producing a shift towards the relative dominance of more stress-tolerant taxa and leading to a reduction in the physical functional integrity. Understanding how changes in coral community composition influence the potential of reefs to maintain their physical reef functioning is a priority for their conservation and management. Here, we evaluate how coral communities have changed in the northern sector of the Mexican Caribbean between 1985 and 2016, and the implications for the maintenance of physical reef functions in the back- and fore-reef zones. We used the cover of coral species to explore changes in four morpho-functional groups, coral community composition, coral community calcification, the reef functional index and the reef carbonate budget. Over a period of 31 years, ecological homogenization occurred between the two reef zones mostly due to a reduction in the cover of framework-building branching (Acropora spp.) and foliose-digitiform (Porites porites and Agaricia tenuifolia) coral species in the back-reef, and a relative increase in non-framework species in the fore-reef (Agaricia agaricites and Porites astreoides). This resulted in a significant decrease in the physical functionality of the back-reef zone. At present, both reef zones have negative carbonate budgets, and thus limited capacity to sustain reef accretion, compromising the existing reef structure and its future capacity to provide habitat and environmental services.
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Affiliation(s)
- Nuria Estrada-Saldívar
- Biodiversity and Reef Conservation Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Quintana Roo, México
- Posgrado en Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Avenida Ciudad Universitaria 3000, CP 04510 Coyoacán, Ciudad de México, México
| | - Eric Jordán-Dalhgren
- Coral Ecology Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Quintana Roo, México
| | - Rosa E. Rodríguez-Martínez
- Coral Ecology Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Quintana Roo, México
| | - Chris Perry
- Geography, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4RJ, UK
| | - Lorenzo Alvarez-Filip
- Biodiversity and Reef Conservation Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Quintana Roo, México
- Author for correspondence: Lorenzo Alvarez-Filip e-mail:
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Darling ES, McClanahan TR, Maina J, Gurney GG, Graham NAJ, Januchowski-Hartley F, Cinner JE, Mora C, Hicks CC, Maire E, Puotinen M, Skirving WJ, Adjeroud M, Ahmadia G, Arthur R, Bauman AG, Beger M, Berumen ML, Bigot L, Bouwmeester J, Brenier A, Bridge TCL, Brown E, Campbell SJ, Cannon S, Cauvin B, Chen CA, Claudet J, Denis V, Donner S, Estradivari, Fadli N, Feary DA, Fenner D, Fox H, Franklin EC, Friedlander A, Gilmour J, Goiran C, Guest J, Hobbs JPA, Hoey AS, Houk P, Johnson S, Jupiter SD, Kayal M, Kuo CY, Lamb J, Lee MAC, Low J, Muthiga N, Muttaqin E, Nand Y, Nash KL, Nedlic O, Pandolfi JM, Pardede S, Patankar V, Penin L, Ribas-Deulofeu L, Richards Z, Roberts TE, Rodgers KS, Safuan CDM, Sala E, Shedrawi G, Sin TM, Smallhorn-West P, Smith JE, Sommer B, Steinberg PD, Sutthacheep M, Tan CHJ, Williams GJ, Wilson S, Yeemin T, Bruno JF, Fortin MJ, Krkosek M, Mouillot D. Social–environmental drivers inform strategic management of coral reefs in the Anthropocene. Nat Ecol Evol 2019; 3:1341-1350. [DOI: 10.1038/s41559-019-0953-8] [Citation(s) in RCA: 111] [Impact Index Per Article: 22.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2018] [Accepted: 06/24/2019] [Indexed: 01/23/2023]
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28
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Cannon SE, Donner SD, Fenner D, Beger M. The relationship between macroalgae taxa and human disturbance on central Pacific coral reefs. Mar Pollut Bull 2019; 145:161-173. [PMID: 31590773 DOI: 10.1016/j.marpolbul.2019.05.024] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2018] [Revised: 05/08/2019] [Accepted: 05/12/2019] [Indexed: 06/10/2023]
Abstract
Climate change and human disturbance threatens coral reefs across the Pacific, yet there is little consensus on what characterizes a "healthy" reef. Benthic cover, particularly low coral cover and high macroalgae cover, are often used as an indicator of reef degradation, despite uncertainty about the typical algal community compositions associated with either near-pristine or damaged reefs. In this study, we examine differences in coral and algal community compositions and their response to human disturbance and past heat stress, by analysing 25 sites along a gradient of human disturbance in Majuro and Arno Atolls of the Republic of the Marshall Islands. Our results show that total macroalgae cover indicators of reef degradation may mask the influence of local human disturbance, with different taxa responding to disturbance differently. Identifying macroalgae to a lower taxonomic level (e.g. the genus level) is critical for a more accurate measure of Pacific coral reef health.
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Affiliation(s)
- Sara E Cannon
- Department of Geography, University of British Columbia, 1984 West Mall, Vancouver, BC V6T 1Z2, Canada.
| | - Simon D Donner
- Department of Geography, University of British Columbia, 1984 West Mall, Vancouver, BC V6T 1Z2, Canada
| | | | - Maria Beger
- School of Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, United Kingdom
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Toth LT, Stathakopoulos A, Kuffner IB, Ruzicka RR, Colella MA, Shinn EA. The unprecedented loss of Florida's reef-building corals and the emergence of a novel coral-reef assemblage. Ecology 2019; 100:e02781. [PMID: 31170313 PMCID: PMC6851685 DOI: 10.1002/ecy.2781] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/28/2018] [Revised: 05/01/2019] [Accepted: 05/20/2019] [Indexed: 12/17/2022]
Abstract
Over the last half century, climate change, coral disease, and other anthropogenic disturbances have restructured coral‐reef ecosystems on a global scale. The disproportionate loss of once‐dominant, reef‐building taxa has facilitated relative increases in the abundance of “weedy” or stress‐tolerant coral species. Although the recent transformation of coral‐reef assemblages is unprecedented on ecological timescales, determining whether modern coral reefs have truly reached a novel ecosystem state requires evaluating the dynamics of reef composition over much longer periods of time. Here, we provide a geologic perspective on the shifting composition of Florida's reefs by reconstructing the millennial‐scale spatial and temporal variability in reef assemblages using 59 Holocene reef cores collected throughout the Florida Keys Reef Tract (FKRT). We then compare the relative abundances of reef‐building species in the Holocene reef framework to data from contemporary reef surveys to determine how much Florida's modern reef assemblages have diverged from long‐term baselines. We show that the composition of Florida's reefs was, until recently, remarkably stable over the last 8000 yr. The same corals that have dominated shallow‐water reefs throughout the western Atlantic for hundreds of thousands of years, Acropora palmata, Orbicella spp., and other massive coral taxa, accounted for nearly 90% of Florida's Holocene reef framework. In contrast, the species that now have the highest relative abundances on the FKRT, primarily Porites astreoides and Siderastrea siderea, were rare in the reef framework, suggesting that recent shifts in species assemblages are unprecedented over millennial timescales. Although it may not be possible to return coral reefs to pre‐Anthropocene states, our results suggest that coral‐reef management focused on the conservation and restoration of the reef‐building species of the past, will optimize efforts to preserve coral reefs, and the valuable ecosystem services they provide into the future.
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Affiliation(s)
- L T Toth
- St. Petersburg Coastal & Marine Science Center, U.S. Geological Survey, St. Petersburg, Florida, 33701, USA
| | - A Stathakopoulos
- St. Petersburg Coastal & Marine Science Center, U.S. Geological Survey, St. Petersburg, Florida, 33701, USA
| | - I B Kuffner
- St. Petersburg Coastal & Marine Science Center, U.S. Geological Survey, St. Petersburg, Florida, 33701, USA
| | - R R Ruzicka
- Florida Fish and Wildlife Conservation Commission, Fish and Wildlife Research Institute, St. Petersburg, Florida, 33701, USA
| | - M A Colella
- Florida Fish and Wildlife Conservation Commission, Fish and Wildlife Research Institute, St. Petersburg, Florida, 33701, USA
| | - E A Shinn
- College of Marine Science, University of South Florida, St. Petersburg, Florida, 33701, USA
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30
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Osborn D, Crabbe MJC. Adapting to extreme environments: can coral reefs adapt to climate change? Emerg Top Life Sci 2019; 3:183-95. [DOI: 10.1042/etls20180088] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2018] [Revised: 02/23/2019] [Accepted: 03/11/2019] [Indexed: 12/15/2022]
Abstract
Abstract
Reef-building corals throughout the world have an annual value of tens of billions of dollars, yet they are being degraded at an increasing rate by many anthropogenic and environmental factors. Despite this, some reefs show resilience to such extreme environmental changes. This review shows how techniques in computational modelling, genetics, and transcriptomics are being used to unravel the complexity of coral reef ecosystems, to try and understand if they can adapt to new and extreme environments. Considering the ambitious climate targets of the Paris Agreement to limit global warming to 2°C, with aspirations of even 1.5°C, questions arise on how to achieve this. Geoengineering may be necessary if other avenues fail, although global governance issues need to play a key role. Development of large and effective coral refugia and marine protected areas is necessary if we are not to lose this vital resource for us all.
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31
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Bongaerts P, Smith TB. Beyond the “Deep Reef Refuge” Hypothesis: A Conceptual Framework to Characterize Persistence at Depth. Coral Reefs of the World 2019. [DOI: 10.1007/978-3-319-92735-0_45] [Citation(s) in RCA: 49] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
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32
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Affiliation(s)
- Chris T. Perry
- Geography College of Life and Environmental Sciences University of Exeter Exeter UK
| | - Lorenzo Alvarez‐Filip
- Biodiversity and Reef Conservation Laboratory Unidad Académica de Sistemas Arrecifales Instituto de Ciencias del Mar y Limnología Universidad Nacional Autónoma de Mexico Puerto Morelos Quintana Roo Mexico
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33
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Edmunds PJ. Implications of high rates of sexual recruitment in driving rapid reef recovery in Mo'orea, French Polynesia. Sci Rep 2018; 8:16615. [PMID: 30413729 PMCID: PMC6226471 DOI: 10.1038/s41598-018-34686-z] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2018] [Accepted: 10/23/2018] [Indexed: 11/09/2022] Open
Abstract
Coral abundance continues to decline on tropical reefs around the world, and this trend suggests that coral reefs may not persist beyond the current century. In contrast, this study describes the near-complete mortality of corals on the outer reef (10 m and 17 m depth) of the north shore of Mo’orea, French Polynesia, from 2005 to 2010, followed by unprecedented recovery from 2011 to 2017. Intense corallivory and a cyclone drove coral cover from 33–48% to <3% by 2010, but over the following seven years, recovery occurred through rapid population growth (up to 12% cover y−1) to 25–74% cover by 2017. The thirteen-year, U-shape trajectory of coral cover over time created by the loss and replacement of millions of corals through sexual reproduction underscores the potential for beneficial genetic responses to environmental conditions for at least one genus, Pocillopora. The high ecological resilience of this coral community appears to have been enhanced by variation among genera in the susceptibility to declining cover, and the capacity for population growth (i.e., response diversity). These results suggest that the outer coral communities of Mo’orea may be poised for genetic changes that could affect their capacity to persistence.
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Affiliation(s)
- Peter J Edmunds
- Department of Biology, California State University, 18111 Nordhoff Street, Northridge, CA, 91330-8303, USA.
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Toth LT, Kuffner IB, Stathakopoulos A, Shinn EA. A 3,000-year lag between the geological and ecological shutdown of Florida's coral reefs. Glob Chang Biol 2018; 24:5471-5483. [PMID: 30133073 DOI: 10.1111/gcb.14389] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2018] [Revised: 05/30/2018] [Accepted: 06/12/2018] [Indexed: 05/22/2023]
Abstract
The global-scale degradation of coral reefs has reached a critical threshold wherein further declines threaten both ecological functionality and the persistence of reef structure. Geological records can provide valuable insights into the long-term controls on reef development that may be key to solving the modern coral-reef crisis. Our analyses of new and existing coral-reef cores from throughout the Florida Keys reef tract (FKRT) revealed significant spatial and temporal variability in reef development during the Holocene. Whereas maximum Holocene reef thickness in the Dry Tortugas was comparable to elsewhere in the western Atlantic, most of Florida's reefs had relatively thin accumulations of Holocene reef framework. During periods of active reef development, average reef accretion rates were similar throughout the FKRT at ~3 m/ky. The spatial variability in reef thickness was instead driven by differences in the duration of reef development. Reef accretion declined significantly from ~6,000 years ago to present, and by ~3,000 years ago, the majority of the FKRT was geologically senescent. Although sea level influenced the development of Florida's reefs, it was not the ultimate driver of reef demise. Instead, we demonstrate that the timing of reef senescence was modulated by subregional hydrographic variability, and hypothesize that climatic cooling was the ultimate cause of reef shutdown. The senescence of the FKRT left the ecosystem balanced at a delicate tipping point at which a veneer of living coral was the only barrier to reef erosion. Modern climate change and other anthropogenic disturbances have now pushed many reefs past that critical threshold and into a novel ecosystem state, in which reef structures built over millennia could soon be lost. The dominant role of climate in the development of the FKRT over timescales of decades to millennia highlights the potential vulnerability of both geological and ecological reef processes to anthropogenic climate change.
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Affiliation(s)
- Lauren T Toth
- U.S. Geological Survey, St. Petersburg Coastal and Marine Science Center, St. Petersburg, Florida
| | - Ilsa B Kuffner
- U.S. Geological Survey, St. Petersburg Coastal and Marine Science Center, St. Petersburg, Florida
| | | | - Eugene A Shinn
- College of Marine Science, University of South Florida, St. Petersburg, Florida
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35
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Edmunds PJ, Nelson HR, Bramanti L. Density‐dependence mediates coral assemblage structure. Ecology 2018; 99:2605-2613. [DOI: 10.1002/ecy.2511] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/19/2018] [Revised: 07/04/2018] [Accepted: 07/20/2018] [Indexed: 11/09/2022]
Affiliation(s)
- Peter J. Edmunds
- Department of Biology California State University 18111 Nordhoff Street Northridge California 91330‐8303 USA
| | - Hannah R. Nelson
- Department of Biology California State University 18111 Nordhoff Street Northridge California 91330‐8303 USA
- Center for Population Biology University of California, Davis One Shields Avenue Davis California 95616 USA
| | - Lorenzo Bramanti
- Department of Biology California State University 18111 Nordhoff Street Northridge California 91330‐8303 USA
- Sorbonne Université CNRS Laboratoire d'Ecogeochimie des Environnements Benthiques (LECOB) Observatoire Oceanologique 66650 Banyuls sur Mer France
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