1
|
Denis V, Ferrier-Pagès C, Schubert N, Coppari M, Baker DM, Camp EF, Gori A, Grottoli AG, Houlbrèque F, Maier SR, Mancinelli G, Martinez S, Yalçın Özdilek Ş, Radice VZ, Ribes M, Richter C, Viladrich N, Rossi S. Heterotrophy in marine animal forests in an era of climate change. Biol Rev Camb Philos Soc 2024; 99:965-978. [PMID: 38284299 DOI: 10.1111/brv.13053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Revised: 01/05/2024] [Accepted: 01/08/2024] [Indexed: 01/30/2024]
Abstract
Marine animal forests (MAFs) are benthic ecosystems characterised by biogenic three-dimensional structures formed by suspension feeders such as corals, gorgonians, sponges and bivalves. They comprise highly diversified communities among the most productive in the world's oceans. However, MAFs are in decline due to global and local stressors that threaten the survival and growth of their foundational species and associated biodiversity. Innovative and scalable interventions are needed to address the degradation of MAFs and increase their resilience under global change. Surprisingly, few studies have considered trophic interactions and heterotrophic feeding of MAF suspension feeders as an integral component of MAF conservation. Yet, trophic interactions are important for nutrient cycling, energy flow within the food web, biodiversity, carbon sequestration, and MAF stability. This comprehensive review describes trophic interactions at all levels of ecological organisation in tropical, temperate, and cold-water MAFs. It examines the strengths and weaknesses of available tools for estimating the heterotrophic capacities of the foundational species in MAFs. It then discusses the threats that climate change poses to heterotrophic processes. Finally, it presents strategies for improving trophic interactions and heterotrophy, which can help to maintain the health and resilience of MAFs.
Collapse
Affiliation(s)
- Vianney Denis
- Institute of Oceanography, National Taiwan University, No. 1, Section 4, Roosevelt Road, Da'an District, Taipei, 10617, Taiwan
| | | | - Nadine Schubert
- CCMAR-Center of Marine Sciences, University of Algarve, Campus Gambelas, Bld. 7, Faro, 8005-139, Portugal
| | - Martina Coppari
- Department of Life and Environmental Sciences, Polytechnic University of Marche, via Brecce Bianche snc, Ancona, 60131, Italy
| | - David M Baker
- School of Biological Sciences & Swire Institute of Marine Science, The University of Hong Kong, Hong Kong
| | - Emma F Camp
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, 2007, Australia
| | - Andrea Gori
- Department of Evolutionary Biology, Ecology and Environmental Sciences, Universitat de Barcelona, Av. Diagonal 643, Barcelona, 08028, Spain
- Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Av. Diagonal 643, Barcelona, 08028, Spain
| | - Andréa G Grottoli
- School of Earth Sciences, The Ohio State University, 125 South Oval Mall, Columbus, OH, 43210, USA
| | - Fanny Houlbrèque
- Entropie UMR 9220, Institut de Recherche pour le Développement, Nouméa, 98848, New Caledonia
| | - Sandra R Maier
- Greenland Climate Research Centre, Greenland Institute of Natural Resources, Kivioq 2 PO Box 570, Nuuk, 3900, Greenland
| | - Giorgio Mancinelli
- Department of Biological and Environmental Sciences and Technologies (DiSTeBA), University of Salento, Via Monteroni s/n, Lecce, 73100, Italy
| | - Stephane Martinez
- Graduate School of Oceanography, University of Rhode Island, 215 South Ferry Road, Narragansett, RI, 02882, USA
| | - Şükran Yalçın Özdilek
- Department of Biology, Science Faculty, Çanakkale Onsekiz Mart University, Çanakkale, 17100, Turkey
| | - Veronica Z Radice
- Department of Biological Sciences, Old Dominion University, Norfolk, VA, 23529, USA
| | - Marta Ribes
- Institut de Ciències del Mar (ICM-CSIC), Passeig Marítim de la Barceloneta 37-49, Barcelona, 08003, Spain
| | - Claudio Richter
- Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Am Alten Hafen 26, Bremerhaven, 27568, Germany
- Department of Biology/Chemistry, University of Bremen, Leobener Str., NW 2, Bremen, 28359, Germany
| | - Nuria Viladrich
- Department of Evolutionary Biology, Ecology and Environmental Sciences, Universitat de Barcelona, Av. Diagonal 643, Barcelona, 08028, Spain
- Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Av. Diagonal 643, Barcelona, 08028, Spain
| | - Sergio Rossi
- Department of Biological and Environmental Sciences and Technologies (DiSTeBA), University of Salento, Via Monteroni s/n, Lecce, 73100, Italy
- Universidade Federal do Ceara, Instituto de Ciencias do Mar (Labomar), Av. da Abolicao 3207, Fortaleza, Brazil
| |
Collapse
|
2
|
Carballo-Bolaños R, Wei Y, Denis V. Coral transplantation in urban environments: Insights from colony survival and growth on artificial frames versus the seabed. Mar Environ Res 2024; 194:106319. [PMID: 38211473 DOI: 10.1016/j.marenvres.2023.106319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Revised: 11/30/2023] [Accepted: 12/20/2023] [Indexed: 01/13/2024]
Abstract
Urban and green transitions require infrastructures that can cause pressure on coastal ecosystems. In northern Taiwan, plans to convert an oil-fired power plant to gas would necessitate a port terminal construction, threatening nearby corals and marine life. To mitigate construction impacts, the relocation of affected corals was proposed. We conducted a transplantation study, prior to such a large-scale coral relocation, to assess its feasibility and to identify potential risks associated with the marginal location of northern Taiwan for tropical corals. Five coral species, representative of the different ecological strategies, were selected. We used two methods (artificial frames and seabed cementation) to transplant 246 colony fragments to two pre-selected sites. Over a year, we monitored fragment survival and growth, in parallel with environmental conditions. We found that survival and growth were significantly influenced by transplantation methods, sites, and species. The difference between methods revealed biotic (predation by corallivorous snails) and abiotic (mechanical damage by waves) factors affecting coral survival and growth. Acropora species exhibited high growth, but also high mortality, consistent with their known ecology. Other species presented slower growth but higher survival. One site provided a better environment for corals, which we attributed to topography and reduced exposure. Overall, this study provides interesting insights into relocating corals in a high-latitude and urban coral ecosystem, highlighting risks related to mechanical damages and predation.
Collapse
Affiliation(s)
- Rodrigo Carballo-Bolaños
- Institute of Oceanography, National Taiwan University, No. 1, Section 4, Roosevelt Road, Taipei City, 10617, Taiwan; Ocean Center, National Taiwan University, No. 1, Section 4, Roosevelt Road, Taipei City, 10617, Taiwan.
| | - Yi Wei
- Institute of Oceanography, National Taiwan University, No. 1, Section 4, Roosevelt Road, Taipei City, 10617, Taiwan; Ocean Center, National Taiwan University, No. 1, Section 4, Roosevelt Road, Taipei City, 10617, Taiwan
| | - Vianney Denis
- Institute of Oceanography, National Taiwan University, No. 1, Section 4, Roosevelt Road, Taipei City, 10617, Taiwan; Ocean Center, National Taiwan University, No. 1, Section 4, Roosevelt Road, Taipei City, 10617, Taiwan.
| |
Collapse
|
3
|
Cannon SE, Donner SD, Liu A, González Espinosa PC, Baird AH, Baum JK, Bauman AG, Beger M, Benkwitt CE, Birt MJ, Chancerelle Y, Cinner JE, Crane NL, Denis V, Depczynski M, Fadli N, Fenner D, Fulton CJ, Golbuu Y, Graham NAJ, Guest J, Harrison HB, Hobbs JPA, Hoey AS, Holmes TH, Houk P, Januchowski-Hartley FA, Jompa J, Kuo CY, Limmon GV, Lin YV, McClanahan TR, Muenzel D, Paddack MJ, Planes S, Pratchett MS, Radford B, Reimer JD, Richards ZT, Ross CL, Rulmal J, Sommer B, Williams GJ, Wilson SK. Macroalgae exhibit diverse responses to human disturbances on coral reefs. Glob Chang Biol 2023; 29:3318-3330. [PMID: 37020174 DOI: 10.1111/gcb.16694] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2022] [Revised: 03/01/2023] [Accepted: 03/01/2023] [Indexed: 05/16/2023]
Abstract
Scientists and managers rely on indicator taxa such as coral and macroalgal cover to evaluate the effects of human disturbance on coral reefs, often assuming a universally positive relationship between local human disturbance and macroalgae. Despite evidence that macroalgae respond to local stressors in diverse ways, there have been few efforts to evaluate relationships between specific macroalgae taxa and local human-driven disturbance. Using genus-level monitoring data from 1205 sites in the Indian and Pacific Oceans, we assess whether macroalgae percent cover correlates with local human disturbance while accounting for factors that could obscure or confound relationships. Assessing macroalgae at genus level revealed that no genera were positively correlated with all human disturbance metrics. Instead, we found relationships between the division or genera of algae and specific human disturbances that were not detectable when pooling taxa into a single functional category, which is common to many analyses. The convention to use percent cover of macroalgae as an indication of local human disturbance therefore likely obscures signatures of local anthropogenic threats to reefs. Our limited understanding of relationships between human disturbance, macroalgae taxa, and their responses to human disturbances impedes the ability to diagnose and respond appropriately to these threats.
Collapse
Affiliation(s)
- Sara E Cannon
- Department of Geography, University of British Columbia, British Columbia, Vancouver, Canada
| | - Simon D Donner
- Department of Geography, University of British Columbia, British Columbia, Vancouver, Canada
| | - Angela Liu
- Department of Geography, University of British Columbia, British Columbia, Vancouver, Canada
- School of Geography and the Environment, University of Oxford, Oxford, UK
| | - Pedro C González Espinosa
- Department of Geography, University of British Columbia, British Columbia, Vancouver, Canada
- Institute for the Oceans and Fisheries, University of British Columbia, British Columbia, Vancouver, Canada
| | - Andrew H Baird
- Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Queensland, Townsville, Australia
| | - Julia K Baum
- Department of Biology, University of Victoria, British Columbia, Victoria, Canada
| | - Andrew G Bauman
- Department of Marine and Environmental Science, Nova Southeastern University, Florida, Dania Beach, USA
| | - Maria Beger
- School of Biology, Faculty of Biological Sciences, University of Leeds, Leeds, UK
- Department of Aquatic Resources Management, Faculty of Fisheries and Marine Science, Pattimura University, Ambon, Indonesia
- Centre for Biodiversity and Conservation Science, University of Queensland, Queensland, St Lucia, Australia
| | | | - Matthew J Birt
- Australian Institute of Marine Science, Western Australia, Perth, Australia
| | - Yannick Chancerelle
- CRIOBE, UAR 3278 CNRS-EPHE-UPVD, Moorea French Polynesia and the French Center for Excellence for Coral Reefs (LabEx Corail), PSL Research University, Paris, France
| | - Joshua E Cinner
- Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Queensland, Townsville, Australia
| | - Nicole L Crane
- One People One Reef, California, Santa Cruz, USA
- Department of Biology, Cabrillo College, California, Aptos, USA
| | - Vianney Denis
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | - Martial Depczynski
- Australian Institute of Marine Science, Western Australia, Perth, Australia
| | - Nur Fadli
- Faculty of Marine and Fisheries, Universitas Syiah Kuala, Banda Aceh, Indonesia
| | | | | | | | | | - James Guest
- School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, UK
| | - Hugo B Harrison
- Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Queensland, Townsville, Australia
- School of Biological Sciences, University of Bristol, Bristol, UK
| | - Jean-Paul A Hobbs
- School of Biological Sciences, The University of Queensland, Queensland, Brisbane, Australia
| | - Andrew S Hoey
- Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Queensland, Townsville, Australia
| | - Thomas H Holmes
- Marine Science Program, Biodiversity and Conservation Science, Department of Biodiversity Conservation and Attractions, Western Australia, Kensington, Australia
| | - Peter Houk
- University of Guam Marine Laboratory, UOG Station, Mangilao, Guam
| | | | - Jamaluddin Jompa
- Department of Marine Science and Fisheries, Hasanuddin University, South Sulawesi, Makassar, Indonesia
| | - Chao-Yang Kuo
- Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Queensland, Townsville, Australia
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Gino Valentino Limmon
- Department of Marine Biology, Pattimura University, Ambon, Indonesia
- Maritime and Marine Science Centre of Excellence, Pattimura University, Ambon, Indonesia
| | - Yuting V Lin
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | | | - Dominic Muenzel
- School of Biology, Faculty of Biological Sciences, University of Leeds, Leeds, UK
| | - Michelle J Paddack
- One People One Reef, California, Santa Cruz, USA
- Santa Barbara City College, California, Santa Barbara, USA
| | - Serge Planes
- CRIOBE, UAR 3278 CNRS-EPHE-UPVD, Moorea French Polynesia and the French Center for Excellence for Coral Reefs (LabEx Corail), PSL Research University, Paris, France
| | - Morgan S Pratchett
- Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Queensland, Townsville, Australia
| | - Ben Radford
- Australian Institute of Marine Science, Western Australia, Perth, Australia
- Oceans Institute, University of Western Australia, Western Australia, Perth, Australia
| | - James Davis Reimer
- Department of Marine Science, Chemistry and Biology, Faculty of Science, University of the Ryukyus, Okinawa, Japan
- Tropical Biosphere Research Center, University of the Ryukyus, Okinawa, Japan
| | - Zoe T Richards
- Coral Conservation and Research Group, School of Molecular and Life Sciences, Curtin University, Western Australia, Bently, Australia
- Collections and Research, Western Australian Museum, Western Australia, Perth, Australia
| | - Claire L Ross
- Marine Science Program, Biodiversity and Conservation Science, Department of Biodiversity Conservation and Attractions, Western Australia, Kensington, Australia
- Oceans Institute, University of Western Australia, Western Australia, Perth, Australia
| | - John Rulmal
- One People One Reef, California, Santa Cruz, USA
- Ulithi Falalop Community Action Program, Yap, Micronesia
| | - Brigitte Sommer
- School of Life and Environmental Sciences, The University of Sydney, New South Wales, Sydney, Australia
- School of Life Sciences, University of Technology Sydney, 2007, New South Wales, Sydney, Australia
| | | | - Shaun K Wilson
- Marine Science Program, Biodiversity and Conservation Science, Department of Biodiversity Conservation and Attractions, Western Australia, Kensington, Australia
- Oceans Institute, University of Western Australia, Western Australia, Perth, Australia
| |
Collapse
|
4
|
Parkinson JE, Tang SL, Denis V. Editorial: Variance matters: Individual differences and their consequences for natural selection within and among coral holobionts. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.977844] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
|
5
|
Rossi S, Bramanti L, Horta P, Allcock L, Carreiro-Silva M, Coppari M, Denis V, Hadjioannou L, Isla E, Jimenez C, Johnson M, Mohn C, Orejas C, Ramšak A, Reimer J, Rinkevich B, Rizzo L, Salomidi M, Samaai T, Schubert N, Soares M, Thurstan RH, Vassallo P, Ziveri P, Zorrilla-Pujana J. Protecting global marine animal forests. Science 2022; 376:929. [PMID: 35617383 DOI: 10.1126/science.abq7583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
|
6
|
Soto D, De Palmas S, Ho M, Denis V, Allen Chen C. A molecular census of early-life stage scleractinian corals in shallow and mesophotic zones. Ecol Evol 2021; 11:14573-14584. [PMID: 34765126 PMCID: PMC8571570 DOI: 10.1002/ece3.8122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Revised: 07/27/2021] [Accepted: 07/29/2021] [Indexed: 11/06/2022] Open
Abstract
The decline of coral reefs has fueled interest in determining whether mesophotic reefs can shield against disturbances and help replenish deteriorated shallower reefs. In this study, we characterized spatial (horizontal and vertical) and seasonal patterns of diversity in coral recruits from Dabaisha and Guiwan reefs at Ludao, Taiwan. Concrete blocks supporting terra-cotta tiles were placed at shallow (15m) and mesophotic (40m) depths, during 2016-2018. Half of the tiles were retrieved and replaced biannually over three 6-month surveys (short-term); the remainder retrieved at the end of the 18-month (long-term) survey. 451 recruits were located using fluorescent censusing and identified by DNA barcoding. Barcoding the mitochondrial cytochrome oxidase I (COI) gene resulted in 17 molecular operational taxonomic units (MOTUs). To obtain taxonomic resolution to the generic level, Pocillopora were phylotyped using the mitochondrial open reading frame (ORF), resolving eight MOTUs. Acropora, Isopora, and Montipora recruits were identified by the nuclear PaxC intron, yielding ten MOTUs. Overall, 35 MOTUs were generated and were comprised primarily of Pocillopora and, in fewer numbers, Acropora, Isopora, Pavona, Montipora, Stylophora, among others. 40% of MOTUs recruited solely within mesophotic reefs while 20% were shared by both depth zones. MOTUs recruiting across a broad depth distribution appear consistent with the hypothesis of mesophotic reefs acting as a refuge for shallow-water coral reefs. In contrast, Acropora and Isopora MOTUs were structured across depth zones representing an exception to this hypothesis. This research provides an imperative assessment of coral recruitment in understudied mesophotic reefs and imparts insight into the refuge hypothesis.
Collapse
Affiliation(s)
- Derek Soto
- Biodiversity ProgramTaiwan International Graduate ProgramAcademia Sinica and National Taiwan Normal UniversityTaipeiTaiwan
- Biodiversity Research CenterAcademia SinicaTaipeiTaiwan
- Department of Life ScienceNational Taiwan Normal UniversityTaipeiTaiwan
| | - Stéphane De Palmas
- Biodiversity ProgramTaiwan International Graduate ProgramAcademia Sinica and National Taiwan Normal UniversityTaipeiTaiwan
- Biodiversity Research CenterAcademia SinicaTaipeiTaiwan
- Department of Life ScienceNational Taiwan Normal UniversityTaipeiTaiwan
| | - Ming‐Jay Ho
- Biodiversity Research CenterAcademia SinicaTaipeiTaiwan
- Green Island Marine Research StationAcademia SinicaLudao, Taitung CountyTaiwan
| | - Vianney Denis
- Institute of OceanographyNational Taiwan UniversityTaipeiTaiwan
| | - Chaolun Allen Chen
- Biodiversity Research CenterAcademia SinicaTaipeiTaiwan
- Department of Life ScienceNational Taiwan Normal UniversityTaipeiTaiwan
- Department of Life ScienceTung Hai UniversityTaichungTaiwan
| |
Collapse
|
7
|
Affiliation(s)
- Nicolas Sturaro
- Institute of Oceanography National Taiwan University Taipei Taiwan
| | - Yunli Eric Hsieh
- Institute of Oceanography National Taiwan University Taipei Taiwan
| | - Qi Chen
- Institute of Oceanography National Taiwan University Taipei Taiwan
| | - Pei‐Ling Wang
- Institute of Oceanography National Taiwan University Taipei Taiwan
- Research Center for Future Earth National Taiwan University Taipei Taiwan
| | - Vianney Denis
- Institute of Oceanography National Taiwan University Taipei Taiwan
| |
Collapse
|
8
|
de Palmas S, Soto D, Ho MJ, Denis V, Chen CA. Strong horizontal and vertical connectivity in the coral Pocillopora verrucosa from Ludao, Taiwan, a small oceanic island. PLoS One 2021; 16:e0258181. [PMID: 34634065 PMCID: PMC8504772 DOI: 10.1371/journal.pone.0258181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2021] [Accepted: 09/22/2021] [Indexed: 12/01/2022] Open
Abstract
Mesophotic habitats could be sheltered from natural and anthropogenic disturbances and act as reproductive refuges, providing propagules to replenish shallower populations. Molecular markers can be used as proxies evaluating the connectivity and inferring population structure and larval dispersal. This study characterizes population structure as well as horizontal and vertical genetic connectivity of the broadcasting coral Pocillopora verrucosa from Ludao, a small oceanic island off the eastern coast of Taiwan. We genotyped 75 P. verrucosa specimens from three sites (Gongguan, Dabaisha, and Guiwan) at three depth ranges (Shallow: 7-15 m, Mid-depth: 23-30 m, and Deep: 38-45 m), spanning shallow to upper mesophotic coral reefs, with eight microsatellite markers. F-statistics showed a moderate differentiation (FST = 0.106, p<0.05) between two adjacent locations (Dabaisha 23-30 and Dabaisha 38-45 m), but no differentiation elsewhere, suggesting high levels of connectivity among sites and depths. STRUCTURE analysis showed no genetic clustering among sites or depths, indicating that all Pocillopora individuals could be drawn from a single panmictic population. Simulations of recent migration assigned 30 individuals (40%) to a different location from where they were collected. Among them, 1/3 were assigned to deeper locations, 1/3 to shallower populations and 1/3 were assigned to the right depth but a different site. These results suggest high levels of vertical and horizontal connectivity, which could enhance the recovery of P. verrucosa following disturbances around Ludao, a feature that agrees with demographic studies portraying this species as an opportunistic scleractinian.
Collapse
Affiliation(s)
- Stéphane de Palmas
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
- Department of Life Science, National Taiwan Normal University, Taipei, Taiwan
- Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and National Taiwan Normal University, Taipei, Taiwan
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | - Derek Soto
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
- Department of Life Science, National Taiwan Normal University, Taipei, Taiwan
- Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and National Taiwan Normal University, Taipei, Taiwan
| | - Ming-Jay Ho
- Green Island Marine Research Station, Marine Science Thematic Centre, Biodiversity Research Center, Academia Sinica, Green Island, Taitung, Taiwan
| | - Vianney Denis
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | - Chaolun Allen Chen
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
- Department of Life Science, National Taiwan Normal University, Taipei, Taiwan
- Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and National Taiwan Normal University, Taipei, Taiwan
- Department of Life Sciences, Tunghai University, Taichung, Taiwan
| |
Collapse
|
9
|
Hsiao WV, Lin YV, Lin HT, Denis V. Learning from differences: Abiotic determinism of benthic communities in Northern Taiwan. Mar Environ Res 2021; 170:105361. [PMID: 34022419 DOI: 10.1016/j.marenvres.2021.105361] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Revised: 04/02/2021] [Accepted: 05/07/2021] [Indexed: 06/12/2023]
Abstract
Differences in the initial configuration of ecological communities may lead to contrasting trajectories when facing environmental changes. Here, we propose to uncover the determinism of benthic communities by carrying out a detailed investigation of their response to small-scale modification of environmental conditions, including physical, chemical, and geological factors. At ten locations (confounding site and depth) in Northern Taiwan, communities were delineated using a morpho-functional classification of the organisms. A k-means clustering was used to identify k homogenous groups among transects. Their environmental determinism was examined by combining this result with 16 environmental variables of transect conditions into a regression tree framework. Biotic and abiotic data were further analyzed with a Multivariate Regression Tree (MRT) to ascertain the hierarchical environmental determinism. The classifications produced by both approaches were compared using the Adjusted Rand index (ARI) to assess the predictive power of unsupervised clustering on its missing explanatory components (abiotic variables). k-means and MRT produced five clusters, respectively, with a similarity of 0.82 in ARI. Wave motion, followed by substrate types resolved most of the variance, while chemical factors in this study were uniform throughout the region. Comparable structures for both methods (clustering groups) demonstrated that the delineated clusters matched with contrasting environmental conditions which could be explained by the existence of various benthic communities. Further consideration of these different communities and their environmental context will be important in determining their trajectories under global changes and may help in the interpretation of community modifications with changing environmental conditions.
Collapse
Affiliation(s)
- Wanchien Victoria Hsiao
- Institute of Oceanography, National Taiwan University, No. 1, Section 4, Roosevelt Road, Taipei City, 10617, Taiwan
| | - Yuting Vicky Lin
- Institute of Oceanography, National Taiwan University, No. 1, Section 4, Roosevelt Road, Taipei City, 10617, Taiwan
| | - Huei-Ting Lin
- Institute of Oceanography, National Taiwan University, No. 1, Section 4, Roosevelt Road, Taipei City, 10617, Taiwan
| | - Vianney Denis
- Institute of Oceanography, National Taiwan University, No. 1, Section 4, Roosevelt Road, Taipei City, 10617, Taiwan; Ocean Center, National Taiwan University, No. 1, Section 4, Roosevelt Road., Taipei City, 10617, Taiwan.
| |
Collapse
|
10
|
Ribas-Deulofeu L, Denis V, Château PA, Chen CA. Impacts of heat stress and storm events on the benthic communities of Kenting National Park (Taiwan). PeerJ 2021; 9:e11744. [PMID: 34386301 PMCID: PMC8312492 DOI: 10.7717/peerj.11744] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2021] [Accepted: 06/17/2021] [Indexed: 11/20/2022] Open
Abstract
Over the past few decades, extreme events—such as ocean warming, typhoons, and coral bleaching—have been increasing in intensity and frequency, threatening coral reefs from the physiological to ecosystem level. In the present study, the impacts of rising seawater temperatures, typhoons, and coral bleaching events on benthic communities were seasonally assessed over a 21 month-period, using photo-transects at 11 sites in Kenting National Park (KNP), Taiwan. Between August 2015 and April 2017, seven typhoon events were recorded and in situ seawater temperatures in KNP reached a maximum of 31.2 °C, as opposed to an average maximum SST of 28.8 °C (2007–2016). The state and response of benthic communities to these events were interpreted based on the environmental conditions of KNP. The repeated storms lowered the levels of thermal stress during the 2015–2016 El Niño event and may have mitigated its impact on the Taiwanese coral reefs. However, storm-induced local shifts from coral to macro-algae dominance were observed. Storms may mitigate the negative effects of heatwaves, but the mechanical damage induced by the storms may also decrease the structural complexity of reefs and their associated diversity. Eventually, despite reef persistence, the composition and function of remnant communities may profoundly diverge from those in regions with less active storms.
Collapse
Affiliation(s)
- Lauriane Ribas-Deulofeu
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan.,Taiwan International Graduate Program-Biodiversity, Academia Sinica, Taipei, Taiwan.,Department of Life Science, National Taiwan Normal University, Taipei, Taiwan
| | - Vianney Denis
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | - Pierre-Alexandre Château
- Department of Marine Environment and Engineering, National Sun Yat-sen University, Kaohsiung, Taiwan
| | - Chaolun Allen Chen
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan.,Taiwan International Graduate Program-Biodiversity, Academia Sinica, Taipei, Taiwan.,Department of Life Science, National Taiwan Normal University, Taipei, Taiwan.,Department of Life Science, Tunghai University, Taichung, Taiwan
| |
Collapse
|
11
|
Denis V, Fan T, Hsiao WV, Hwang S, Lin YV, Nozawa Y. Idea Paper: Tracking the distribution of accretive reef communities across the Kuroshio region. Ecol Res 2020. [DOI: 10.1111/1440-1703.12128] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Vianney Denis
- Institute of Oceanography National Taiwan University Taipei Taiwan
| | - Tung‐Yung Fan
- Graduate Institute of Marine Biology National Dong Hwa University Pingtung Taiwan
- National Museum of Marine Biology and Aquarium Pingtung Taiwan
| | | | - Sung‐Jin Hwang
- Department of Life Science Woosuk University Jincheon Republic of Korea
| | - Yuting Vicky Lin
- Institute of Oceanography National Taiwan University Taipei Taiwan
| | - Yoko Nozawa
- Biodiversity Research Center Academia Sinica Taipei Taiwan
| |
Collapse
|
12
|
Sturaro N, Hsieh YE, Chen Q, Wang PL, Denis V. Toward a standardised protocol for the stable isotope analysis of scleractinian corals. Rapid Commun Mass Spectrom 2020; 34:e8663. [PMID: 31802564 DOI: 10.1002/rcm.8663] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2019] [Revised: 11/12/2019] [Accepted: 11/13/2019] [Indexed: 06/10/2023]
Abstract
RATIONALE The stable isotope analysis of carbon and nitrogen is a powerful tool in many ecological studies, but different sample treatments may affect stable isotope ratios and hamper comparisons among studies. The goal of this study was to determine whether treatments that are commonly used to prepare scleractinian coral samples for stable isotope analysis yield different δ15 N and δ13 C values, and to provide guidelines toward a standardised protocol. METHODS The animal tissues and Symbiodiniaceae of two symbiotic scleractinian coral species (Stylophora pistillata and Porites lutea) were divided into subsamples to test the effects of the drying method, lipid extraction, acidification treatment and water washing. All the subsamples were analysed for their δ15 N and δ13 C values, using continuous flow elemental analyser/isotope ratio mass spectrometry. RESULTS The drying method and lipid extraction treatment had no substantial effects on the δ15 N and δ13 C values of Symbiodiniaceae and animal tissues. Acid treatment did cause significant differences in δ13 C values (mean differences ≤0.5‰, with individual samples becoming up to 2.0‰ more negative), whereas no ecologically significant differences were observed in δ15 N values. Animal tissue δ13 C values may vary depending on whether samples are washed or not. CONCLUSIONS To move towards a standardised protocol in coral research, we recommend using an available drying method (as they are equally acceptable) for the stable isotope analysis of scleractinian corals, examining the need for lipid extraction on a case-by-case basis, performing a direct acidification of Symbiodiniaceae and animal tissues, and avoiding washing animal tissue with distilled water.
Collapse
Affiliation(s)
- Nicolas Sturaro
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | - Yunli Eric Hsieh
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | - Qi Chen
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | - Pei-Ling Wang
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
- Research Center for Future Earth, National Taiwan University, Taipei, Taiwan
| | - Vianney Denis
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| |
Collapse
|
13
|
Chen CJ, Chen WJ, Shikina S, Denis V, Chang CF. The plasticity of gonad development of sexual reproduction in a scleractinian coral, Porites lichen. Gen Comp Endocrinol 2020; 285:113270. [PMID: 31525374 DOI: 10.1016/j.ygcen.2019.113270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/28/2018] [Revised: 08/14/2019] [Accepted: 09/12/2019] [Indexed: 11/29/2022]
Abstract
Metazoans have evolved a complexity of sexual system and gonad development, however, sexual reproduction of scleractinian corals is not well understood. This study aimed to address the sexual system and gametogenesis in Porites lichen, a common species in the Indo-West Pacific. This study represents the first description of sexual system, which were determined by histological analysis of the samples collected in northern Taiwan. In addition, female and hermaphroditic colonies were separately cultured in aquarium to further monitor the release of eggs/larvae and thereby confirm the breeding system. The results demonstrate that P. lichen is a polygamodioecious brooder and displays seasonal gametogenesis and embryogenesis that ends in late summer. In hermaphroditic colonies, male polyps are predominant and hermaphroditic polyps make up a very small percent (1%-19.3%). In addition, two new gametogenic features were observed from the histological analysis: 1) oocytes developed within the spermaries in hermaphroditic polyps during the early stage of gametogenesis and 2) melanin granular cells were clustered in spermaries in both male and hermaphroditic colonies. This study demonstrated the plasticity of gametogenesis and melanin related cells appeared in corals, which provides an important information to explore hormones and molecular mechanism involving in gonadal arrangement and production of melanin for further studies.
Collapse
Affiliation(s)
- Chieh-Jhen Chen
- Institute of Oceanography, National Taiwan University, Taipei 10617, Taiwan; Department of Aquaculture, National Taiwan Ocean University, Keelung 20224, Taiwan; Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung 20224, Taiwan
| | - Wei-Jen Chen
- Institute of Oceanography, National Taiwan University, Taipei 10617, Taiwan
| | - Shinya Shikina
- Institute of Marine Environment and Ecology, National Taiwan Ocean University, Keelung 20224, Taiwan; Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung 20224, Taiwan
| | - Vianney Denis
- Institute of Oceanography, National Taiwan University, Taipei 10617, Taiwan
| | - Ching-Fong Chang
- Department of Aquaculture, National Taiwan Ocean University, Keelung 20224, Taiwan; Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung 20224, Taiwan.
| |
Collapse
|
14
|
Darling ES, McClanahan TR, Maina J, Gurney GG, Graham NAJ, Januchowski-Hartley F, Cinner JE, Mora C, Hicks CC, Maire E, Puotinen M, Skirving WJ, Adjeroud M, Ahmadia G, Arthur R, Bauman AG, Beger M, Berumen ML, Bigot L, Bouwmeester J, Brenier A, Bridge TCL, Brown E, Campbell SJ, Cannon S, Cauvin B, Chen CA, Claudet J, Denis V, Donner S, Estradivari, Fadli N, Feary DA, Fenner D, Fox H, Franklin EC, Friedlander A, Gilmour J, Goiran C, Guest J, Hobbs JPA, Hoey AS, Houk P, Johnson S, Jupiter SD, Kayal M, Kuo CY, Lamb J, Lee MAC, Low J, Muthiga N, Muttaqin E, Nand Y, Nash KL, Nedlic O, Pandolfi JM, Pardede S, Patankar V, Penin L, Ribas-Deulofeu L, Richards Z, Roberts TE, Rodgers KS, Safuan CDM, Sala E, Shedrawi G, Sin TM, Smallhorn-West P, Smith JE, Sommer B, Steinberg PD, Sutthacheep M, Tan CHJ, Williams GJ, Wilson S, Yeemin T, Bruno JF, Fortin MJ, Krkosek M, Mouillot D. Social–environmental drivers inform strategic management of coral reefs in the Anthropocene. Nat Ecol Evol 2019; 3:1341-1350. [DOI: 10.1038/s41559-019-0953-8] [Citation(s) in RCA: 111] [Impact Index Per Article: 22.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2018] [Accepted: 06/24/2019] [Indexed: 01/23/2023]
|
15
|
Lin YV, Denis V. Acknowledging differences: number, characteristics, and distribution of marine benthic communities along Taiwan coast. Ecosphere 2019. [DOI: 10.1002/ecs2.2803] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Affiliation(s)
- Yuting Vicky Lin
- Institute of Oceanography National Taiwan University Taipei 10617 Taiwan
| | - Vianney Denis
- Institute of Oceanography National Taiwan University Taipei 10617 Taiwan
| |
Collapse
|
16
|
Carballo-Bolaños R, Denis V, Huang YY, Keshavmurthy S, Chen CA. Temporal variation and photochemical efficiency of species in Symbiodinaceae associated with coral Leptoria phrygia (Scleractinia; Merulinidae) exposed to contrasting temperature regimes. PLoS One 2019; 14:e0218801. [PMID: 31251761 PMCID: PMC6599219 DOI: 10.1371/journal.pone.0218801] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2018] [Accepted: 06/10/2019] [Indexed: 11/19/2022] Open
Abstract
The Symbiodinaceae are paradoxical in that they play a fundamental role in the success of scleractinian corals, but also in their dismissal when under stress. In the past decades, the discovery of the endosymbiont's genetic and functional diversity has led people to hope that some coral species can survive bleaching events by associating with a stress-resistant symbiont that can become dominant when seawater temperatures increase. The variety of individual responses encouraged us to scrutinize each species individually to gauge its resilience to future changes. Here, we analyse the temporal variation in the Symbiodinaceae community associated with Leptoria phrygia, a common scleractinian coral from the Indo-Pacific. Coral colonies were sampled from two distant reef sites located in southern Taiwan that differ in temperature regimes, exemplifying a 'variable site' (VS) and a 'steady site' (SS). We investigated changes in the relative abundance of the dominant symbiont and its physiology every 3-4 months from 2016-2017. At VS, 11 of the 12 colonies were dominated by the stress-resistant Durusdinium spp. (>90% dominance) and only one colony exhibited co-dominance between Durusdinium spp. and Cladocopium spp. Every colony displayed high photochemical efficiency across all sampling periods, while showing temporal differences in symbiont density and chlorophyll a concentration. At SS, seven colonies out of 13 were dominated by Cladocopium spp., five presented co-dominance between Durusdinium spp./Cladocopium spp. and only one was dominated by Durusdinium spp. Colonies showed temporal differences in photochemical efficiency and chlorophyll a concentration during the study period. Our results suggest that VS colonies responded physiologically better to high temperature variability by associating with Durusdinium spp., while in SS there is still inter-colonial variability, a feature that might be advantageous for coping with different environmental changes.
Collapse
Affiliation(s)
- Rodrigo Carballo-Bolaños
- Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and National Taiwan Normal University, Taipei, Taiwan
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
- Department of Life Science, National Taiwan Normal University, Taipei, Taiwan
| | - Vianney Denis
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | - Ya-Yi Huang
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | | | - Chaolun Allen Chen
- Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and National Taiwan Normal University, Taipei, Taiwan
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
- Department of Life Science, National Taiwan Normal University, Taipei, Taiwan
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
- Department of Life Science, Tunghai University, Taichung, Taiwan
| |
Collapse
|
17
|
Yang SH, Tandon K, Lu CY, Wada N, Shih CJ, Hsiao SSY, Jane WN, Lee TC, Yang CM, Liu CT, Denis V, Wu YT, Wang LT, Huang L, Lee DC, Wu YW, Yamashiro H, Tang SL. Metagenomic, phylogenetic, and functional characterization of predominant endolithic green sulfur bacteria in the coral Isopora palifera. Microbiome 2019; 7:3. [PMID: 30609942 PMCID: PMC6320609 DOI: 10.1186/s40168-018-0616-z] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2018] [Accepted: 12/21/2018] [Indexed: 05/13/2023]
Abstract
BACKGROUND Endolithic microbes in coral skeletons are known to be a nutrient source for the coral host. In addition to aerobic endolithic algae and Cyanobacteria, which are usually described in the various corals and form a green layer beneath coral tissues, the anaerobic photoautotrophic green sulfur bacteria (GSB) Prosthecochloris is dominant in the skeleton of Isopora palifera. However, due to inherent challenges in studying anaerobic microbes in coral skeleton, the reason for its niche preference and function are largely unknown. RESULTS This study characterized a diverse and dynamic community of endolithic microbes shaped by the availability of light and oxygen. In addition, anaerobic bacteria isolated from the coral skeleton were cultured for the first time to experimentally clarify the role of these GSB. This characterization includes GSB's abundance, genetic and genomic profiles, organelle structure, and specific metabolic functions and activity. Our results explain the advantages endolithic GSB receive from living in coral skeletons, the potential metabolic role of a clade of coral-associated Prosthecochloris (CAP) in the skeleton, and the nitrogen fixation ability of CAP. CONCLUSION We suggest that the endolithic microbial community in coral skeletons is diverse and dynamic and that light and oxygen are two crucial factors for shaping it. This study is the first to demonstrate the ability of nitrogen uptake by specific coral-associated endolithic bacteria and shed light on the role of endolithic bacteria in coral skeletons.
Collapse
Affiliation(s)
- Shan-Hua Yang
- Biodiversity Research Center, Academia Sinica, Taipei, 11529 Taiwan
- Tropical Biosphere Research Center, University of the Ryukyus, Okinawa, 905-0227 Japan
- Department of Life Science, Tunghai University, Taichung, 40704 Taiwan
- Center for Ecology and Environment, Tunghai University, Taichung, 40704 Taiwan
| | - Kshitij Tandon
- Biodiversity Research Center, Academia Sinica, Taipei, 11529 Taiwan
- Bioinformatics Program, Institute of Information Science, Taiwan International Graduate Program, Academia Sinica, Taipei, 11529 Taiwan
- Institute of Bioinformatics and Structural Biology, National Tsing Hua University, Hsinchu, 30013 Taiwan
| | - Chih-Ying Lu
- Biodiversity Research Center, Academia Sinica, Taipei, 11529 Taiwan
| | - Naohisa Wada
- Biodiversity Research Center, Academia Sinica, Taipei, 11529 Taiwan
| | - Chao-Jen Shih
- Bioresource Collection and Research Center, Food Industry Research and Development Institute, Hsinchu, 30062 Taiwan
| | - Silver Sung-Yun Hsiao
- Institute of Earth Sciences, Academia Sinica, Taipei, 11529 Taiwan
- Institute of Astronomy and Astrophysics, Academia Sinica, Taipei, 11529 Taiwan
| | - Wann-Neng Jane
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, 11529 Taiwan
| | - Tzan-Chain Lee
- Biodiversity Research Center, Academia Sinica, Taipei, 11529 Taiwan
| | - Chi-Ming Yang
- Biodiversity Research Center, Academia Sinica, Taipei, 11529 Taiwan
| | - Chi-Te Liu
- Institute of Biotechnology, National Taiwan University, Taipei, 10672 Taiwan
| | - Vianney Denis
- Institute of Oceanography, National Taiwan University, Taipei, 10617 Taiwan
| | - Yu-Ting Wu
- Department of Forestry, National Pingtung University of Science and Technology, Pintung, 91201 Taiwan
| | - Li-Ting Wang
- Bioresource Collection and Research Center, Food Industry Research and Development Institute, Hsinchu, 30062 Taiwan
| | - Lina Huang
- Bioresource Collection and Research Center, Food Industry Research and Development Institute, Hsinchu, 30062 Taiwan
| | - Der-Chuen Lee
- Institute of Earth Sciences, Academia Sinica, Taipei, 11529 Taiwan
| | - Yu-Wei Wu
- Graduate Institute of Biomedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei, 11031 Taiwan
| | - Hideyuki Yamashiro
- Tropical Biosphere Research Center, University of the Ryukyus, Okinawa, 905-0227 Japan
| | - Sen-Lin Tang
- Biodiversity Research Center, Academia Sinica, Taipei, 11529 Taiwan
| |
Collapse
|
18
|
Denis V, Chen J, Chen Q, Hsieh YE, Lin YV, Wang C, Wang H, Sturaro N. Biogeography of functional trait diversity in the Taiwanese reef fish fauna. Ecol Evol 2019; 9:522-532. [PMID: 30680133 PMCID: PMC6342120 DOI: 10.1002/ece3.4771] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Revised: 11/01/2018] [Accepted: 11/06/2018] [Indexed: 01/23/2023] Open
Abstract
The richness of Taiwanese reef fish species is inversely correlated to latitude as a direct consequence of the abiotic environment and its effects on benthic habitats. However, to date, no studies have investigated the variations in the diversity of traits (FD) linked with the role of these fishes in the ecosystem. FD is usually considered more sensitive than species richness in detecting early changes in response to disturbances, and therefore could serve as an indicator of ecological resilience to environmental changes. Here, we aim to characterize FD in the Taiwanese reef fish fauna and to document its regional variations. Six traits were used to categorize the 1,484 reef fish species occurring in four environmentally contrasted regions around Taiwan. The number of unique trait combinations (FEs), their richness (FRic), their redundancy (FR), their over-redundancy (FOR), and their vulnerability (FV) were compared among these regions. Overall, 416 FEs were identified. Their number decreased from south to north in step with regional species richness but FRic remained similar among regions. FR and FOR were higher to the south. At the local scale, variations in FEs and FRic are in concordance with the worldwide pattern of FD. High-latitude, impoverished fish assemblages, offer a range of trait combinations similar to diversified tropical assemblages. Increasing diversity in the latter mainly contributes to raising FR and supports already over-redundant entities. High vulnerability makes many combinations highly sensitive to species loss, and was higher at intermediate latitudes when using a fine resolution in trait categories. It suggests that the loss of FEs may first be characterized by an increase in their vulnerability, a pattern that could have been overlooked in previous global scale analyses. Overall, this study provides new insights into reef fish trait biogeography with potential ramifications for ecosystem functioning.
Collapse
Affiliation(s)
- Vianney Denis
- Institute of OceanographyNational Taiwan UniversityTaipeiTaiwan
| | - Jian‐Wen Chen
- Institute of OceanographyNational Taiwan UniversityTaipeiTaiwan
| | - Qi Chen
- Institute of OceanographyNational Taiwan UniversityTaipeiTaiwan
- Institute of Fisheries ScienceNational Taiwan UniversityTaipeiTaiwan
| | | | | | - Ching‐Wei Wang
- Institute of OceanographyNational Taiwan UniversityTaipeiTaiwan
| | - Hui‐Yu Wang
- Institute of OceanographyNational Taiwan UniversityTaipeiTaiwan
- Institute of Fisheries ScienceNational Taiwan UniversityTaipeiTaiwan
| | - Nicolas Sturaro
- Institute of OceanographyNational Taiwan UniversityTaipeiTaiwan
- Present address:
Laboratory of OceanologyFOCUS, University of LiègeLiègeBelgium
| |
Collapse
|
19
|
De Palmas S, Soto D, Denis V, Ho MJ, Chen CA. Molecular assessment of Pocillopora verrucosa (Scleractinia; Pocilloporidae) distribution along a depth gradient in Ludao, Taiwan. PeerJ 2018; 6:e5797. [PMID: 30386700 PMCID: PMC6204238 DOI: 10.7717/peerj.5797] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Accepted: 09/20/2018] [Indexed: 01/17/2023] Open
Abstract
It can be challenging to identify scleractinian corals from the genus Pocillopora Lamarck 1816 in the field because of their large range of inter- and intra-specific morphological variation that co-occur with changes in the physical environment. This task is made more arduous in the context of a depth gradient, where light and water current could greatly affect the morphology of the corallum. Pocillopora verrucosa (Ellis & Solander 1786) in Taiwan was previously reported exclusively from shallow waters (<10 m in depth), but a recent observation of this species in the mesophotic zone (>40 m in depth) questions this bathymetric distribution. We used the mitochondrial open reading frame and the histone 3 molecular markers to investigate the vertical and horizontal spatial distribution of P. verrucosa around Ludao (Green Island), Taiwan. We genotyped 101 P. verrucosa-like colonies collected from four depth zones, ranging from 7 to 45 m, at three sites around the island. Of the 101 colonies sampled, 85 were genotyped as P. verrucosa, 15 as P. meandrina, and one specimen as an undescribed Pocillopora species. P. verrucosa was found at all depths, while P. meandrina and the undescribed Pocillopora specimen were limited to 15 m depth. P. verrucosa has a large bathymetric distribution around Ludao and could benefit from the refuge that the mesophotic zone offers. This study illustrates the difficulty of identifying Pocillopora corals in the field and emphasizes the relevance of molecular taxonomy as an important and complementary tool to traditional taxonomy for clarifying vertical and horizontal species distribution. Our results also illustrate the need in conservation biology to target species genetic diversity rather than just species diversity.
Collapse
Affiliation(s)
- Stéphane De Palmas
- Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and National Taiwan Normal University, Taipei, Taiwan.,Biodiversity Research Center, Academia Sinica, Taipei, Taiwan.,Department of Life Science, National Taiwan Normal University, Taipei, Taiwan
| | - Derek Soto
- Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and National Taiwan Normal University, Taipei, Taiwan.,Biodiversity Research Center, Academia Sinica, Taipei, Taiwan.,Department of Life Science, National Taiwan Normal University, Taipei, Taiwan
| | - Vianney Denis
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | - Ming-Jay Ho
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan.,Green Island Marine Research Station, Academia Sinica, Ludao, Taitung County, Taiwan
| | - Chaolun Allen Chen
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan.,Department of Life Science, National Taiwan Normal University, Taipei, Taiwan.,Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| |
Collapse
|
20
|
Soto D, De Palmas S, Ho MJ, Denis V, Chen CA. Spatial variation in the morphological traits of Pocillopora verrucosa along a depth gradient in Taiwan. PLoS One 2018; 13:e0202586. [PMID: 30118513 PMCID: PMC6097691 DOI: 10.1371/journal.pone.0202586] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2018] [Accepted: 08/06/2018] [Indexed: 11/18/2022] Open
Abstract
Pocillopora verrucosa is a widely distributed depth-generalist coral that presents plasticity in its skeletal macro- and microstructure in response to environmental gradients. Light and water movement, which covary with depth, are the main environmental drivers of morphological plasticity in this genus; however, assessing environmentally-induced plasticity may be confounded by the extent of interspecific variation in Pocillopora. We examine the morphology of 8 typed P. verrucosa specimens collected along a depth gradient ranging from 7 to 45 meters and comprising 3 sites throughout Ludao, Taiwan. We measured 36 morphological characters, 14 which are novel, in 3 regions on the corallum-the apex, branch and base-in order to quantify their relationship to site and depth. We found significant correlation between depth and 19 morphological characters, notably branch verruca area, branch verruca height, base verruca spacing, base spinule length, and branch corallite area. 60% of microstructural characters and 25% of macrostructural characters showed a correlative relation to depth, suggesting that depth acclimatization is manifested primarily at the microstructural level. Canonical discriminant analysis of all morphometric characters by depth supports clustering into 3 groups: an overlapping 7m and 15m group, a 23-30m group, and a 38-45m group. Canonical discriminant analysis by site supports clustering into low- and high-current sites, differentiated primarily by branch septa width, base septa width, pre-terminal branch width, terminal branch maximum length, and terminal branch minimum length. We conclude that distinctive patterns of morphological variation in mesophotic specimens of P. verrucosa could reflect the effects of abiotic parameters such as light and water flow. Elucidating the mechanisms behind the morphological changes that occur in response to environmental gradients can help clarify the role that physiological plasticity plays in the acclimatization of corals to the unique environmental settings of mesophotic coral ecosystems.
Collapse
Affiliation(s)
- Derek Soto
- Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and National Taiwan Normal University, Taipei, Taiwan
- Department of Life Science, National Taiwan Normal University, Taipei, Taiwan
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Stephane De Palmas
- Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and National Taiwan Normal University, Taipei, Taiwan
- Department of Life Science, National Taiwan Normal University, Taipei, Taiwan
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Ming Jay Ho
- Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and National Taiwan Normal University, Taipei, Taiwan
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
- Green Island Marine Research Station, Academia Sinica, Ludao, Taiwan
| | - Vianney Denis
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | - Chaolun Allen Chen
- Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and National Taiwan Normal University, Taipei, Taiwan
- Department of Life Science, National Taiwan Normal University, Taipei, Taiwan
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| |
Collapse
|
21
|
Woo S, Yang SH, Chen HJ, Tseng YF, Hwang SJ, De Palmas S, Denis V, Imahara Y, Iwase F, Yum S, Tang SL. Geographical variations in bacterial communities associated with soft coral Scleronephthya gracillimum. PLoS One 2017; 12:e0183663. [PMID: 28859111 PMCID: PMC5578639 DOI: 10.1371/journal.pone.0183663] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2017] [Accepted: 08/08/2017] [Indexed: 01/17/2023] Open
Abstract
Environmental impacts can alter relationships between a coral and its symbiotic microbial community. Furthermore, changes in the microbial community associated with increased seawater temperatures can cause opportunistic infections, coral disease and death. Interactions between soft corals and their associated microbes are not well understood. The species Scleronephthya gracillimum is distributed in tropical to temperate zones in coral assemblages along the Kuroshio Current region. In this study we collected S. gracillimum from various sites at different latitudes, and compared composition of their bacterial communities using Next Generation Sequencing. Coral samples from six geographically distinct areas (two sites each in Taiwan, Japan, and Korea) had considerable variation in their associated bacterial communities and diversity. Endozoicimonaceae was the dominant group in corals from Korea and Japan, whereas Mycoplasma was dominant in corals from Taiwan corals. Interestingly, the latter corals had lower relative abundance of Endozoicimonaceae, but greater diversity. These biogeographic differences in bacterial composition may have been due to varying environmental conditions among study locations, or because of host responses to prevailing environmental conditions. This study provided a baseline for future studies of soft coral microbiomes, and assessment of functions of host metabolites and soft coral holobionts.
Collapse
Affiliation(s)
- Seonock Woo
- Korea Institute of Ocean Science & Technology, Geoje, Republic of Korea
- Faculty of Marine Environmental Science, University of Science and Technology (UST), Geoje, Republic of Korea
| | - Shan-Hua Yang
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Hsing-Ju Chen
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Yu-Fang Tseng
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Sung-Jin Hwang
- Department of Eco-Biological Science, Woosuk University, Jincheon, Republic of Korea
| | - Stephane De Palmas
- Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and National Taiwan Normal University, Taipei, Taiwan
- Department of Life Science, National Taiwan Normal University, Taipei, Taiwan
| | - Vianney Denis
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | - Yukimitsu Imahara
- Wakayama Laboratory, Biological Institute on Kuroshio, Wakayama City, Wakayama, Japan
| | - Fumihito Iwase
- Shikoku Marine Life Laboratory, Otsuki-Town, Kochi, Japan
| | - Seungshic Yum
- Korea Institute of Ocean Science & Technology, Geoje, Republic of Korea
- Faculty of Marine Environmental Science, University of Science and Technology (UST), Geoje, Republic of Korea
| | - Sen-Lin Tang
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
- * E-mail:
| |
Collapse
|
22
|
White KN, Weinstein DK, Ohara T, Denis V, Montenegro J, Reimer JD. Shifting communities after-- typhoon damage on an upper mesophotic reef in Okinawa, Japan. PeerJ 2017; 5:e3573. [PMID: 28828236 PMCID: PMC5564387 DOI: 10.7717/peerj.3573] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2017] [Accepted: 06/22/2017] [Indexed: 11/20/2022] Open
Abstract
Very few studies have been conducted on the long-term effects of typhoon damage on mesophotic coral reefs. This study investigates the long-term community dynamics of damage from Typhoon 17 (Jelawat) in 2012 on the coral community of the upper mesophotic Ryugu Reef in Okinawa, Japan. A shift from foliose to bushy coral morphologies between December 2012 and August 2015 was documented, especially on the area of the reef that was previously recorded to be poor in scleractinian genera diversity and dominated by foliose corals. Comparatively, an area with higher diversity of scleractinian coral genera was observed to be less affected by typhoon damage with more stable community structure due to less change in dominant coral morphologies. Despite some changes in the composition of dominant genera, the generally high coverage of the mesophotic coral community is facilitating the recovery of Ryugu Reef after typhoon damage.
Collapse
Affiliation(s)
- Kristine N White
- Department of Biology, The University of Tampa, Tampa, FL, United States of America
| | - David K Weinstein
- Graduate School of Engineering and Science, University of the Ryukyus, Nishihara, Okinawa, Japan
| | - Taku Ohara
- Graduate School of Engineering and Science, University of the Ryukyus, Nishihara, Okinawa, Japan.,Benthos Divers, Onna, Okinawa, Japan
| | - Vianney Denis
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | - Javier Montenegro
- Graduate School of Engineering and Science, University of the Ryukyus, Nishihara, Okinawa, Japan.,Tropical Biosphere Research Center, University of the Ryukyus, Nishihara, Okinawa, Japan
| | - James D Reimer
- Graduate School of Engineering and Science, University of the Ryukyus, Nishihara, Okinawa, Japan.,Tropical Biosphere Research Center, University of the Ryukyus, Nishihara, Okinawa, Japan
| |
Collapse
|
23
|
Cherradi S, Ayrolles-Torro A, Vezzo-Vié N, Gueguinou N, Denis V, Combes E, Boissière F, Busson M, Canterel-Thouennon L, Mollevi C, Pugnière M, Bibeau F, Ychou M, Martineau P, Gongora C, Del Rio M. Antibody targeting of claudin-1 as a potential colorectal cancer therapy. J Exp Clin Cancer Res 2017; 36:89. [PMID: 28659146 PMCID: PMC5490170 DOI: 10.1186/s13046-017-0558-5] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2017] [Accepted: 06/19/2017] [Indexed: 12/16/2022] Open
Abstract
BACKGROUND Metastatic colorectal cancer (mCRC) is one of the major causes of cancer-related death. Despite the substantial progress in mCRC management, it remains important to identify new therapeutic options and biological markers for personalized medicine. Here, we investigated the expression of claudin-1 (CLDN1), a major tight junction transmembrane protein, in the different colorectal cancer (CRC) molecular subtypes and then assessed the anti-tumor effect of a new anti-CLDN1 monoclonal antibody (mAb). METHODS Gene expression profiling and immunochemistry analysis of normal and tumor tissue samples from patients with stage IV CRC were used to determine CLDN1 gene expression. Then, the 6F6 mAb against CLDN1 extracellular part was generated. Its effect on CRC cell cycle, proliferation, survival and migration was assessed in vitro, using a 3D cell culture system, flow cytometry, clonogenic and migration assays. In vivo, 6 F6 mAb efficacy was evaluated in nude mice after subcutaneous xenografts or intrasplenic injection of CRC cells. RESULTS Compared with normal mucosa where it was almost exclusively cytoplasmic, in CRC samples CLDN1 was overexpressed (p < 0.001) and mainly localized at the membrane. Moreover, it was differentially expressed in the various CRC molecular subtypes. The strongest expressions were found in the consensus molecular subtype CMS2 (p < 0.001), the transit-ampliflying (p < 0.001) and the C5 subtypes (p < 0.001). Lower CLDN1 expression predicted a better outcome in the molecular subtypes C3 and C5 (p = 0.012 and p = 0.004, respectively). CLDN1 targeting with the 6 F6 mAb led to reduction of survival, growth and migration of CLDN1-positive cells. In preclinical mouse models, the 6F6 mAb decreased tumor growth and liver metastasis formation. CONCLUSION Our data indicate that CLDN1 targeting with an anti-CLDN1 mAb results in decreased growth and survival of CRC cells. This suggests that CLDN1 could be a new potential therapeutic target.
Collapse
Affiliation(s)
- S Cherradi
- Institut de Recherche en Cancérologie de Montpellier (IRCM), Inserm U1194, Université de Montpellier, Institut Régional du Cancer de Montpellier (ICM), 208 rue des Apothicaires, F-34298, Montpellier Cedex 5, France
| | - A Ayrolles-Torro
- Institut de Recherche en Cancérologie de Montpellier (IRCM), Inserm U1194, Université de Montpellier, Institut Régional du Cancer de Montpellier (ICM), 208 rue des Apothicaires, F-34298, Montpellier Cedex 5, France
| | - N Vezzo-Vié
- Institut de Recherche en Cancérologie de Montpellier (IRCM), Inserm U1194, Université de Montpellier, Institut Régional du Cancer de Montpellier (ICM), 208 rue des Apothicaires, F-34298, Montpellier Cedex 5, France
- Institut régional du Cancer de Montpellier (ICM), Montpellier, F-34298, France
| | - N Gueguinou
- Institut de Recherche en Cancérologie de Montpellier (IRCM), Inserm U1194, Université de Montpellier, Institut Régional du Cancer de Montpellier (ICM), 208 rue des Apothicaires, F-34298, Montpellier Cedex 5, France
| | - V Denis
- Institut de Recherche en Cancérologie de Montpellier (IRCM), Inserm U1194, Université de Montpellier, Institut Régional du Cancer de Montpellier (ICM), 208 rue des Apothicaires, F-34298, Montpellier Cedex 5, France
| | - E Combes
- Institut de Recherche en Cancérologie de Montpellier (IRCM), Inserm U1194, Université de Montpellier, Institut Régional du Cancer de Montpellier (ICM), 208 rue des Apothicaires, F-34298, Montpellier Cedex 5, France
| | - F Boissière
- Institut régional du Cancer de Montpellier (ICM), Montpellier, F-34298, France
| | - M Busson
- Institut de Recherche en Cancérologie de Montpellier (IRCM), Inserm U1194, Université de Montpellier, Institut Régional du Cancer de Montpellier (ICM), 208 rue des Apothicaires, F-34298, Montpellier Cedex 5, France
| | - L Canterel-Thouennon
- Institut de Recherche en Cancérologie de Montpellier (IRCM), Inserm U1194, Université de Montpellier, Institut Régional du Cancer de Montpellier (ICM), 208 rue des Apothicaires, F-34298, Montpellier Cedex 5, France
- Institut régional du Cancer de Montpellier (ICM), Montpellier, F-34298, France
| | - C Mollevi
- Institut de Recherche en Cancérologie de Montpellier (IRCM), Inserm U1194, Université de Montpellier, Institut Régional du Cancer de Montpellier (ICM), 208 rue des Apothicaires, F-34298, Montpellier Cedex 5, France
- Institut régional du Cancer de Montpellier (ICM), Montpellier, F-34298, France
| | - M Pugnière
- Institut de Recherche en Cancérologie de Montpellier (IRCM), Inserm U1194, Université de Montpellier, Institut Régional du Cancer de Montpellier (ICM), 208 rue des Apothicaires, F-34298, Montpellier Cedex 5, France
| | - F Bibeau
- Institut de Recherche en Cancérologie de Montpellier (IRCM), Inserm U1194, Université de Montpellier, Institut Régional du Cancer de Montpellier (ICM), 208 rue des Apothicaires, F-34298, Montpellier Cedex 5, France
- Institut régional du Cancer de Montpellier (ICM), Montpellier, F-34298, France
| | - M Ychou
- Institut de Recherche en Cancérologie de Montpellier (IRCM), Inserm U1194, Université de Montpellier, Institut Régional du Cancer de Montpellier (ICM), 208 rue des Apothicaires, F-34298, Montpellier Cedex 5, France
- Institut régional du Cancer de Montpellier (ICM), Montpellier, F-34298, France
| | - P Martineau
- Institut de Recherche en Cancérologie de Montpellier (IRCM), Inserm U1194, Université de Montpellier, Institut Régional du Cancer de Montpellier (ICM), 208 rue des Apothicaires, F-34298, Montpellier Cedex 5, France
| | - C Gongora
- Institut de Recherche en Cancérologie de Montpellier (IRCM), Inserm U1194, Université de Montpellier, Institut Régional du Cancer de Montpellier (ICM), 208 rue des Apothicaires, F-34298, Montpellier Cedex 5, France
| | - M Del Rio
- Institut de Recherche en Cancérologie de Montpellier (IRCM), Inserm U1194, Université de Montpellier, Institut Régional du Cancer de Montpellier (ICM), 208 rue des Apothicaires, F-34298, Montpellier Cedex 5, France.
- Institut régional du Cancer de Montpellier (ICM), Montpellier, F-34298, France.
| |
Collapse
|
24
|
Eyal G, Wiedenmann J, Grinblat M, D’Angelo C, Kramarsky-Winter E, Treibitz T, Ben-Zvi O, Shaked Y, Smith TB, Harii S, Denis V, Noyes T, Tamir R, Loya Y. Spectral Diversity and Regulation of Coral Fluorescence in a Mesophotic Reef Habitat in the Red Sea. PLoS One 2015; 10:e0128697. [PMID: 26107282 PMCID: PMC4479885 DOI: 10.1371/journal.pone.0128697] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2015] [Accepted: 04/29/2015] [Indexed: 11/25/2022] Open
Abstract
The phenomenon of coral fluorescence in mesophotic reefs, although well described for shallow waters, remains largely unstudied. We found that representatives of many scleractinian species are brightly fluorescent at depths of 50–60 m at the Interuniversity Institute for Marine Sciences (IUI) reef in Eilat, Israel. Some of these fluorescent species have distribution maxima at mesophotic depths (40–100 m). Several individuals from these depths displayed yellow or orange-red fluorescence, the latter being essentially absent in corals from the shallowest parts of this reef. We demonstrate experimentally that in some cases the production of fluorescent pigments is independent of the exposure to light; while in others, the fluorescence signature is altered or lost when the animals are kept in darkness. Furthermore, we show that green-to-red photoconversion of fluorescent pigments mediated by short-wavelength light can occur also at depths where ultraviolet wavelengths are absent from the underwater light field. Intraspecific colour polymorphisms regarding the colour of the tissue fluorescence, common among shallow water corals, were also observed for mesophotic species. Our results suggest that fluorescent pigments in mesophotic reefs fulfil a distinct biological function and offer promising application potential for coral-reef monitoring and biomedical imaging.
Collapse
Affiliation(s)
- Gal Eyal
- Department of Zoology, Tel-Aviv University, Tel-Aviv, Israel
- The Interuniversity Institute for Marine Sciences of Eilat, Eilat, Israel
| | - Jörg Wiedenmann
- Coral Reef Laboratory, University of Southampton, NOCS, Southampton, United Kingdom
- Institute for Life Sciences (IFLS), University of Southampton, Southampton, United Kingdom
- * E-mail:
| | - Mila Grinblat
- Department of Zoology, Tel-Aviv University, Tel-Aviv, Israel
| | - Cecilia D’Angelo
- Coral Reef Laboratory, University of Southampton, NOCS, Southampton, United Kingdom
| | | | - Tali Treibitz
- Charney School of Marine Sciences, University of Haifa, Haifa, Israel
| | - Or Ben-Zvi
- Department of Zoology, Tel-Aviv University, Tel-Aviv, Israel
| | - Yonathan Shaked
- The Interuniversity Institute for Marine Sciences of Eilat, Eilat, Israel
| | - Tyler B. Smith
- Center for Marine and Environmental Studies, University of the Virgin Islands, St. Thomas, United States Virgin Islands, United States of America
| | - Saki Harii
- Tropical Biosphere Research Center, University of the Ryukyus, Motobu, Okinawa, Japan
| | - Vianney Denis
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Tim Noyes
- Bermuda Institute of Ocean Sciences (BIOS), St. George's, Bermuda
| | - Raz Tamir
- The Interuniversity Institute for Marine Sciences of Eilat, Eilat, Israel
- Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan, Israel
| | - Yossi Loya
- Department of Zoology, Tel-Aviv University, Tel-Aviv, Israel
| |
Collapse
|
25
|
Hsu CM, de Palmas S, Kuo CY, Denis V, Chen CA. Identification of scleractinian coral recruits using fluorescent censusing and DNA barcoding techniques. PLoS One 2014; 9:e107366. [PMID: 25211345 PMCID: PMC4161427 DOI: 10.1371/journal.pone.0107366] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2013] [Accepted: 08/15/2014] [Indexed: 11/19/2022] Open
Abstract
The identification of coral recruits has been problematic due to a lack of definitive morphological characters being available for higher taxonomic resolution. In this study, we tested whether fluorescent detection of coral recruits used in combinations of different DNA-barcoding markers (cytochrome oxidase I gene [COI], open reading frame [ORF], and nuclear Pax-C intron [PaxC]) could be useful for increasing the resolution of coral spat identification in ecological studies. One hundred and fifty settlement plates were emplaced at nine sites on the fringing reefs of Kenting National Park in southern Taiwan between April 2011 and September 2012. A total of 248 living coral spats and juveniles (with basal areas ranging from 0.21 to 134.57 mm2) were detected on the plates with the aid of fluorescent light and collected for molecular analyses. Using the COI DNA barcoding technique, 90.3% (224/248) of coral spats were successfully identified into six genera, including Acropora, Isopora, Montipora, Pocillopora, Porites, and Pavona. PaxC further separated I. cuneata and I. palifera of Isopora from Acropora, and ORF successfully identified the species of Pocillopora (except P. meandrina and P. eydouxi). Moreover, other cnidarian species such as actinarians, zoanthids, and Millepora species were visually found using fluorescence and identified by COI DNA barcoding. This combination of existing approaches greatly improved the taxonomic resolution of early coral life stages, which to date has been mainly limited to the family level based on skeletal identification. Overall, this study suggests important improvements for the identification of coral recruits in ecological studies.
Collapse
Affiliation(s)
- Chia-Min Hsu
- Biodiversity Research Center, Academia Sinica, Nangang, Taipei, Taiwan
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | | | - Chao-Yang Kuo
- Biodiversity Research Center, Academia Sinica, Nangang, Taipei, Taiwan
- ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Australia
| | - Vianney Denis
- Biodiversity Research Center, Academia Sinica, Nangang, Taipei, Taiwan
| | - Chaolun Allen Chen
- Biodiversity Research Center, Academia Sinica, Nangang, Taipei, Taiwan
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
- Taiwan International Graduate Program (TIGP)-Biodiversity, Academia Sinica, Nangang, Taipei, Taiwan
- * E-mail:
| |
Collapse
|
26
|
Woo S, Lee A, Denis V, Chen CA, Yum S. Transcript response of soft coral (Scleronephthya gracillimum) on exposure to polycyclic aromatic hydrocarbons. Environ Sci Pollut Res Int 2014; 21:901-910. [PMID: 23832774 DOI: 10.1007/s11356-013-1958-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2013] [Accepted: 06/24/2013] [Indexed: 06/02/2023]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are the most persistent organic pollutants in worldwide aquatic environments. The extensive isolation of genes responsive to PAH pollution in soft coral (Scleronephthya gracillimum) is described herein. Soft coral colonies were exposed to 100 μg/L of a standard mixture of PAHs. Gene candidates with transcript levels that changed in response to PAH exposure were identified by differential display polymerase chain reaction (DD-PCR). There were 37 types of candidate genes identified, of which 20 were upregulated in expression and 17 were downregulated. The functions of the genes identified included oxidative stress response, ribosomal structure maintenance, molecular chaperone activity, protein kinase activation and tumorigenesis, defense mechanisms, transcription, and other biological responses. mRNA quantification was carried out using real-time quantitative PCR in eight selected genes: cytosolic malate dehydrogenase, protein disulfide isomerase, ribosomal protein L6, ral guanine nucleotide dissociation stimulator-like 1, poly(ADP-ribose) polymerase 4, peptidylglycine α-hydroxylating monooxygenase, a disintegrin and metalloproteinase (ADAM) metallopeptidase protein, and eukaryotic initiation factor 4 gamma 3. Changes in transcript levels were consistent with DD-PCR results. The gene candidates isolated in this study were differentially expressed and therefore have potential as molecular biomarkers for understanding coral responses to environmental stressors.
Collapse
Affiliation(s)
- Seonock Woo
- South Sea Environment Research Division, Korea Institute of Ocean Science and Technology, Geoje, 656-830, Republic of Korea
| | | | | | | | | |
Collapse
|
27
|
Woo S, Denis V, Won H, Shin K, Lee G, Lee TK, Yum S. Expressions of oxidative stress-related genes and antioxidant enzyme activities in Mytilus galloprovincialis (Bivalvia, Mollusca) exposed to hypoxia. Zool Stud 2013. [DOI: 10.1186/1810-522x-52-15] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Abstract
Background
In this study, we investigated transcription and enzyme level responses of mussels Mytilus galloprovincialis exposed to hypoxic conditions. Genes for catalase (CAT), cytochrome P450, glutathione S-transferase (GST), metallothionein, superoxide dismutase (SOD), cytochrome c oxidase subunit 1 (COX-1), and NADH dehydrogenase subunit 2 were selected for study. Transcriptional changes were investigated in mussels exposed to hypoxia for 24 and 48 h and were compared to changes in control mussels maintained at normal oxygen levels. Activities of CAT, GST, and SOD enzymes, and lipid peroxidation (LPO) were also investigated in mussels following exposure to hypoxia for 24, 48, and 72 h.
Results
Relative to the control group, the CAT activity decreased in all hypoxia treatments, while the activity of GST significantly increased in mussels exposed to hypoxia for 24 and 48 h, but decreased in those exposed for 72 h. The LPO levels were significantly higher in mussels in the 24- and 48-h hypoxia treatments than those in the control mussels, but there was no significant change in the SOD activities among all hypoxia treatments. Messenger RNA levels for the CAT, cytochrome P450, GST, metallothionein, and SOD genes were not significantly affected by hypoxic conditions for 48 h, but the expressions of the COX-1 and NADH dehydrogenase subunit 2 genes were significantly repressed in mussels in both the 24- and 48-h exposure treatments.
Conclusions
These results demonstrate the transcriptional stability and changes among several genes related to oxidative stress under oxygen-depletion conditions in M. galloprovincialis and provide useful information about the modulation of antioxidant enzyme activities induced by hypoxia in a marine animal.
Collapse
|
28
|
White KN, Ohara T, Fujii T, Kawamura I, Mizuyama M, Montenegro J, Shikiba H, Naruse T, McClelland T, Denis V, Reimer JD. Typhoon damage on a shallow mesophotic reef in Okinawa, Japan. PeerJ 2013; 1:e151. [PMID: 24032094 PMCID: PMC3767277 DOI: 10.7717/peerj.151] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2013] [Accepted: 08/14/2013] [Indexed: 11/20/2022] Open
Abstract
Little is known about effects of large storm systems on mesophotic reefs. This study reports on how Typhoon 17 (Jelawat) affected Ryugu Reef on Okinawa-jima, Japan in September 2012. Benthic communities were surveyed before and after the typhoon using line intercept transect method. Comparison of the benthic assemblages showed highly significant differences in coral coverage at depths of 25–32 m before and after Typhoon 17. A large deep stand of Pachyseris foliosa was apparently less resistant to the storm than the shallower high diversity area of this reef. Contradictory to common perception, this research shows that large foliose corals at deeper depths are just as susceptible to typhoon damage as shallower branching corals. However, descriptive functional group analyses resulted in only minor changes after the disturbance, suggesting the high likelihood of recovery and the high resilience capacity of this mesophotic reef.
Collapse
Affiliation(s)
- Kristine N White
- University of Maryland University College, Asia Division, Camp Foster Education Center , United States/Japan
| | | | | | | | | | | | | | | | | | | | | |
Collapse
|
29
|
Harrity C, Denis V, Ciprike V, Emerson G, Mocanu E. Does past exposure to hepatitis B virus effect ART outcomes? Fertil Steril 2013. [DOI: 10.1016/j.fertnstert.2013.07.461] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
30
|
Denis V, Guillaume MMM, Goutx M, de Palmas S, Debreuil J, Baker AC, Boonstra RK, Bruggemann JH. Fast growth may impair regeneration capacity in the branching coral Acropora muricata. PLoS One 2013; 8:e72618. [PMID: 24023627 PMCID: PMC3758286 DOI: 10.1371/journal.pone.0072618] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2013] [Accepted: 07/12/2013] [Indexed: 01/08/2023] Open
Abstract
Regeneration of artificially induced lesions was monitored in nubbins of the branching coral Acropora muricata at two reef-flat sites representing contrasting environments at Réunion Island (21°07'S, 55°32'E). Growth of these injured nubbins was examined in parallel, and compared to controls. Biochemical compositions of the holobiont and the zooxanthellae density were determined at the onset of the experiment, and the photosynthetic efficiency (Fv/Fm ) of zooxanthellae was monitored during the experiment. Acropora muricata rapidly regenerated small lesions, but regeneration rates significantly differed between sites. At the sheltered site characterized by high temperatures, temperature variations, and irradiance levels, regeneration took 192 days on average. At the exposed site, characterized by steadier temperatures and lower irradiation, nubbins demonstrated fast lesion repair (81 days), slower growth, lower zooxanthellae density, chlorophyll a concentration and lipid content than at the former site. A trade-off between growth and regeneration rates was evident here. High growth rates seem to impair regeneration capacity. We show that environmental conditions conducive to high zooxanthellae densities in corals are related to fast skeletal growth but also to reduced lesion regeneration rates. We hypothesize that a lowered regenerative capacity may be related to limited availability of energetic and cellular resources, consequences of coral holobionts operating at high levels of photosynthesis and associated growth.
Collapse
Affiliation(s)
- Vianney Denis
- Laboratoire d’Ecologie Marine – FRE 3560 CNRS, Université de La Réunion, Saint-Denis, La Réunion, France
- Département Milieux et Peuplements Aquatiques, UMR CNRS-MNHN-UPMC-IRD BOrEA, Muséum National d’Histoire Naturelle, Paris, France
- * E-mail:
| | - Mireille M. M. Guillaume
- Laboratoire d’Ecologie Marine – FRE 3560 CNRS, Université de La Réunion, Saint-Denis, La Réunion, France
- Département Milieux et Peuplements Aquatiques, UMR CNRS-MNHN-UPMC-IRD BOrEA, Muséum National d’Histoire Naturelle, Paris, France
- Laboratoire d’Excellence ‘CORAIL,’ Perpignan, France
| | - Madeleine Goutx
- Aix-Marseille Université, CNRS/INSU, IRD, Mediterranean Institute of Oceanography (MIO), UM 110, Marseille, France
- Université de Toulon, CNRS/INSU, IRD, Mediterranean Institute of Oceanography (MIO), UM 110, La Garde, France
| | - Stéphane de Palmas
- Laboratoire d’Ecologie Marine – FRE 3560 CNRS, Université de La Réunion, Saint-Denis, La Réunion, France
| | - Julien Debreuil
- Laboratoire d’Ecologie Marine – FRE 3560 CNRS, Université de La Réunion, Saint-Denis, La Réunion, France
| | - Andrew C. Baker
- Division of Marine Biology and Fisheries, Rosenstiel School of Marine and Atmospheric Science, University of Miami, Miami, Florida, United States of America
| | - Roxane K. Boonstra
- Division of Marine Biology and Fisheries, Rosenstiel School of Marine and Atmospheric Science, University of Miami, Miami, Florida, United States of America
| | - J. Henrich Bruggemann
- Laboratoire d’Ecologie Marine – FRE 3560 CNRS, Université de La Réunion, Saint-Denis, La Réunion, France
- Laboratoire d’Excellence ‘CORAIL,’ Perpignan, France
| |
Collapse
|
31
|
Denis V, Mezaki T, Tanaka K, Kuo CY, De Palmas S, Keshavmurthy S, Chen CA. Coverage, diversity, and functionality of a high-latitude coral community (Tatsukushi, Shikoku Island, Japan). PLoS One 2013; 8:e54330. [PMID: 23342135 PMCID: PMC3544760 DOI: 10.1371/journal.pone.0054330] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2012] [Accepted: 12/11/2012] [Indexed: 12/02/2022] Open
Abstract
Background Seawater temperature is the main factor restricting shallow-water zooxanthellate coral reefs to low latitudes. As temperatures increase, coral species and perhaps reefs may move into higher-latitude waters, increasing the chances of coral reef ecosystems surviving despite global warming. However, there is a growing need to understand the structure of these high-latitude coral communities in order to analyze their future dynamics and to detect any potential changes. Methodology/Principal Findings The high-latitude (32.75°N) community surveyed was located at Tatsukushi, Shikoku Island, Japan. Coral cover was 60±2% and was composed of 73 scleractinian species partitioned into 7 functional groups. Although only 6% of species belonged to the ‘plate-like’ functional group, it was the major contributor to species coverage. This was explained by the dominance of plate-like species such as Acropora hyacinthus and A. solitaryensis. Comparison with historical data suggests a relatively recent colonization/development of A. hyacinthus in this region and a potential increase in coral diversity over the last century. Low coverage of macroalgae (2% of the benthic cover) contrasted with the low abundance of herbivorous fishes, but may be reasonably explained by the high density of sea urchins (12.9±3.3 individuals m−2). Conclusions/Significance The structure and composition of this benthic community are relatively remarkable for a site where winter temperature can durably fall below the accepted limit for coral reef development. Despite limited functionalities and functional redundancy, the current benthic structure might provide a base upon which a reef could eventually develop, as characterized by opportunistic and pioneer frame-building species. In addition to increasing seawater temperatures, on-going management actions and sea urchin density might also explain the observed state of this community. A focus on such ‘marginal’ communities should be a priority, as they can provide important insights into how tropical corals might cope with environmental changes.
Collapse
Affiliation(s)
- Vianney Denis
- Biodiversity Research Center, Academia Sinica, Nangang, Taipei, Taiwan
| | - Takuma Mezaki
- Kuroshio Biological Research Foundation, Nishidomari, Otsuki-cho, Kochi, Japan
| | - Kouki Tanaka
- Kuroshio Biological Research Foundation, Nishidomari, Otsuki-cho, Kochi, Japan
| | - Chao-Yang Kuo
- Biodiversity Research Center, Academia Sinica, Nangang, Taipei, Taiwan
| | | | | | - Chaolun Allen Chen
- Biodiversity Research Center, Academia Sinica, Nangang, Taipei, Taiwan
- Taiwan International Graduate Program-Biodiversity, Academia Sinica, Nangang, Taipei, Taiwan
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
- * E-mail:
| |
Collapse
|
32
|
Fontana S, Keshavmurthy S, Hsieh HJ, Denis V, Kuo CY, Hsu CM, Leung JKL, Tsai WS, Wallace CC, Chen CA. Molecular evidence shows low species diversity of coral-associated hydroids in Acropora corals. PLoS One 2012; 7:e50130. [PMID: 23209655 PMCID: PMC3510231 DOI: 10.1371/journal.pone.0050130] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2012] [Accepted: 10/16/2012] [Indexed: 11/18/2022] Open
Abstract
A novel symbiosis between scleractinians and hydroids (Zanclea spp.) was recently discovered using taxonomic approaches for hydroid species identification. In this study, we address the question whether this is a species-specific symbiosis or a cosmopolitan association between Zanclea and its coral hosts. Three molecular markers, including mitochondrial 16S and nuclear 28S ribosomal genes, and internal transcribed spacer (ITS), were utilized to examine the existence of Zanclea species from 14 Acropora species and 4 other Acroporidae genera including 142 coral samples collected from reefs in Kenting and the Penghu Islands, Taiwan, Togian Island, Indonesia, and Osprey Reef and Orpheus Island on the Great Barrier Reef, Australia. Molecular phylogenetic analyses of the 16S and 28S genes showed that Acropora-associated Zanclea was monophyletic, but the genus Zanclea was not. Analysis of the ITS, and 16S and 28S genes showed either identical or extremely low genetic diversity (with mean pairwise distances of 0.009 and 0.006 base substitutions per site for the 16S and 28S genes, respectively) among Zanclea spp. collected from diverse Acropora hosts in different geographic locations, suggesting that a cosmopolitan and probably genus-specific association occurs between Zanclea hydroids and their coral hosts.
Collapse
Affiliation(s)
- Silvia Fontana
- Biodiversity Research Center, Academia Sinica, Nangang, Taipei, Taiwan
- International Taiwan Graduate Program (TIGP)-Biodiversity, Academia Sinica, Nangang, Taipei, Taiwan
| | | | | | - Vianney Denis
- Biodiversity Research Center, Academia Sinica, Nangang, Taipei, Taiwan
| | - Chao-Yang Kuo
- Biodiversity Research Center, Academia Sinica, Nangang, Taipei, Taiwan
| | - Chia-Ming Hsu
- Biodiversity Research Center, Academia Sinica, Nangang, Taipei, Taiwan
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | - Julia K. L. Leung
- Biodiversity Research Center, Academia Sinica, Nangang, Taipei, Taiwan
| | - Wan-Sen Tsai
- Penghu Marine Biological Research Center, Makong, Penghu County, Taiwan
| | | | - Chaolun Allen Chen
- Biodiversity Research Center, Academia Sinica, Nangang, Taipei, Taiwan
- International Taiwan Graduate Program (TIGP)-Biodiversity, Academia Sinica, Nangang, Taipei, Taiwan
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
- * E-mail:
| |
Collapse
|
33
|
Paillas S, Boissière F, Bibeau F, Denouel A, Mollevi C, Causse A, Denis V, Vezzio N, Marzi L, Cortijo C, Ait Arsa I, Askari N, Engelberg D, Martineau P, Del Rio M, Gongora C. R83: Le ciblage de la voie de la MAPK p38 inhibe la chimiorésistance dans le cancer du côlon. Bull Cancer 2010. [DOI: 10.1016/s0007-4551(15)31001-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
34
|
|
35
|
Prevot PP, Couvreur B, Denis V, Brossard M, Vanhamme L, Godfroid E. Protective immunity against Ixodes ricinus induced by a salivary serpin. Vaccine 2007; 25:3284-92. [PMID: 17270322 DOI: 10.1016/j.vaccine.2007.01.008] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2006] [Revised: 12/18/2006] [Accepted: 01/04/2007] [Indexed: 10/23/2022]
Abstract
Iris is a specific elastase inhibitor expressed in the salivary glands of the hard tick Ixodes ricinus. It belongs to the superfamily of serpins and interferes with both haemostasis and the immune response of the host. In this study, we first show that Iris is expressed in nymphs but not in the female midgut nor in males. We also show that Iris is present in the saliva. To examine its potency as anti-tick vaccine candidate, we set up three models of I. ricinus infestation on immunized animals: nymphs on mice, and adults and nymphs on rabbits. We report the rise of neutralizing antibodies following immunization of rabbits and mice. This comes with a significant protective immunity against ticks in rabbits only, resulting in a 30% mortality rate and a diminution of weight gain in both nymphs and adults and a prolongation of blood feeding time in adults. This is the first report on an anti-tick vaccine trial on I. ricinus using a protein able to interact with both host immunity and haemostasis, as a vaccinating antigen.
Collapse
Affiliation(s)
- P-P Prevot
- Institut de Biologie et de Médecine Moléculaires, Université Libre de Bruxelles, Rue des Professeurs Jeener et Brachet, 12, B-6041 Gosselies, Belgium
| | | | | | | | | | | |
Collapse
|
36
|
Melon P, Denis V. [Recommended approach towards a fortuitously diagnosed cardiac arrhythmia]. Rev Med Liege 2006; 61:369-73. [PMID: 16910263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
In the present article, we elaborate a rational approach for the initial management of arrhythmias by the general practitioner. We briefly review the electrocardiographic aspects of arrhythmias.
Collapse
Affiliation(s)
- P Melon
- Service de Cardiologie, CHU Sart Tilman, Liège.
| | | |
Collapse
|
37
|
Affiliation(s)
- J. ‐P. Robin
- Laboratoire de Biologie et Biotechnologies Marines, Université de Caen, Esplanade de la Paix, 14032 Caen, France
| | - V. Denis
- Laboratoire de Biologie et Biotechnologies Marines, Université de Caen, Esplanade de la Paix, 14032 Caen, France
| |
Collapse
|
38
|
Denis V, Salord J, Raskine L, Sanson-Le Pors M, Diemer M, Caulin C, Bergmann J. [Survey of the negativation of bacteriologic tests in patients with active pulmonary tuberculosis: how long should the isolation be?]. Ann Med Interne (Paris) 2000; 151:618-23. [PMID: 11173704] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/18/2023]
Abstract
The risk of contamination by contact with patients with tuberculosis is reduced by isolation of patients until negativation of direct sputum analysis for the research of tuberculosis bacilli. To evaluate the efficacy of this isolation, we compared, in 32 patients with active tuberculosis, the results of direct examination and culture of the sputum and the clinical outcome. Thirty-two successive patients hospitalized in the same internal medicine unit, received antituberculosis drugs and had 3 sputum examinations per week with direct analysis and culture until negativation of the 3 direct examinations. Then, isolation ended. At the time of direct-negativation, 14 of the 32 patients kept positive cultures. In the 18 remaining subjects, the cultures became negative, about seven days before direct-negativation. Patients with negative cultures had more frequently weight increase (83% versus 71%), were more rapidly without fever (11 days versus 19 days), had less cough and had less severe radiologic disease (50% versus 75%) compared to patients with positive cultures but these differences were not statistically significant due to the small sample size. In tuberculosis patients, 3 successive negative direct sputum examinations do not eliminate the risk of tuberculosis transmission, specially to hospitalized or immunocompromised patients. The risk of contamination in these cases, although unknown, may be weak. Terminating isolation should not be based on sputum examination alone, but also on other factors such as the clinical course (resolution of cough and fever, weight), the initial number of bacilli, and the severity of the radiological lesions.
Collapse
Affiliation(s)
- V Denis
- Service de Médecine A, Hôpital Lariboisière, Paris
| | | | | | | | | | | | | |
Collapse
|
39
|
Abstract
The effect of extracellular adenine and the role of the transcriptional activator Bas1p on expression of the yeast genome was assessed by two-dimensional (2D) analysis of the yeast proteome. These data combined with LacZ fusions and northern blot analysis allow us to show that synthesis of enzymes for all 10 steps involved in purine de novo synthesis is repressed in the presence of adenine and requires BAS1 and BAS2 for optimal expression. We also show that expression of ADE12 and ADE13, the two genes required for synthesis of AMP from inosine 5'monophosphate (IMP), is co-regulated with the de novo pathway genes. The same combined approach, used to study histidine biosynthesis gene expression, showed that HIS1 and HIS4 expression is co-regulated with purine biosynthesis genes whereas HIS2, HIS3, HIS5 and HIS6 expression is not. This work, together with previously published data, gives the first comprehensive overview of the regulation of purine and histidine pathways in a eukaryotic organism. Finally, the expression of two pyrimidine biosynthesis genes URA1 and URA3 was found to be severely affected by bas1 and bas2 mutations in the absence of adenine, establishing a regulatory link between the two nucleotide biosynthesis pathways.
Collapse
Affiliation(s)
- V Denis
- Institut de Biochimie et Génétique Cellulaires, CNRS UPR9026, 1, rue Camille Saint-Saëns 33077 Bordeaux Cedex France
| | | | | | | |
Collapse
|
40
|
Bonnet F, Denis V, Fulgencio JP, Beydon L, Darmon PL, Cohen S. [Interviews with families of organ donors: analysis of motivation for acceptance or refusal of donation]. Ann Fr Anesth Reanim 1998; 16:492-7. [PMID: 9750604 DOI: 10.1016/s0750-7658(97)83343-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
OBJECTIVE The reasons for organ donation acceptance or refusal are still unclear. This study analysed the influence of the circumstances of the conversations with the relatives of brain dead patients on their consent for organ donation. STUDY DESIGN Prospective study. MATERIAL The analysis included 41 questionnaires collected over nine months in one organ harvesting centre and focusing on the circumstances of death, the conditions of the conversations and the reasons for acceptance or refusal. METHODS Questionnaire filled in by the physicians after the interviews of the relatives of brain dead patients. RESULTS The refusal rate was higher (54 vs 21%) when only one physician participated in the conversation, when more than two relatives had to decide (42 vs 24%), when conversations took place during night or when the request for organ donation followed immediately the announcement of death (43 vs 20%). Most often the relatives gave their decision within minutes following the request. CONCLUSION The circumstances of conversation with families play an essential role in their decision-making. A written guideline implementation for these conversations would probably be beneficial for the decisions of families in favour of organ donation.
Collapse
Affiliation(s)
- F Bonnet
- Unité de réanimation chirurgicale, hôpital Henri-Mondor, Créteil, France
| | | | | | | | | | | |
Collapse
|
41
|
Denis V, Daignan-Fornier B. Synthesis of glutamine, glycine and 10-formyl tetrahydrofolate is coregulated with purine biosynthesis in Saccharomyces cerevisiae. Mol Gen Genet 1998; 259:246-55. [PMID: 9749667 DOI: 10.1007/s004380050810] [Citation(s) in RCA: 43] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Glutamine, glycine and 10-formyl tetrahydrofolate are consumed during de novo purine biosynthesis. We have found that, in Saccharomyces cerevisiae, synthesis of these cosubstrates is coregulated with synthesis of enzymes of the purine biosynthetic pathway. Analysis of three genes required for synthesis of glutamine, glycine and 10-formyl tetrahydrofolate (GLN1, SHM2 and MTD1, respectively) shows that their expression is repressed by adenine and requires the transcription factors Baslp and Bas2p. Northern analysis reveals that regulation of SHM2 and MTD1 expression by adenine takes place at the transcriptional level. We also show that Bas1p and Bas2p bind in vitro to the promoters of the SHM2 and MTD1 genes, and that mutations in the consensus Bas1p binding sequences strongly affect expression of these genes in vivo. Finally, we have found that a SHM2-lacZ fusion is expressed at a significantly higher level in a bas2-2 disrupted strain than in bas1-2 or bas1-2 bas2-2 mutant strains. The BAS1-dependent, BAS2-independent expression of SHM2-lacZ suggests that, in the absence of Bas2p, Bas1p can interact with another protein partner to activate SHM2 expression.
Collapse
Affiliation(s)
- V Denis
- Institut de Biochimie et Génétique Cellulaires, Bordeaux, France
| | | |
Collapse
|
42
|
Mouly S, Denis V, Salord JM, Caulin C, Bergmann JF. Peut-on lever l'isolement d'un malade tuberculeux bacillifère lorsque la recherche de bacille tuberculeux dans les crachats est négative à l'examen direct? Rev Med Interne 1998. [DOI: 10.1016/s0248-8663(98)80097-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
43
|
Denis V, Dupuis P, Bizouarne N, de O Sampaio S, Hong L, Lebret M, Monsigny M, Nakache M, Kieda C. Selective induction of peripheral and mucosal endothelial cell addressins with peripheral lymph nodes and Peyer's patch cell-conditioned media. J Leukoc Biol 1996; 60:744-52. [PMID: 8975877 DOI: 10.1002/jlb.60.6.744] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Abstract
Vascular endothelial cell addressins play an important role in lymphocyte homing in secondary lymphoid organs and in chronic inflammatory areas. A SV40 large T antigen-immortalized cell line from peripheral lymph nodes, HECa1O [Bizouarne et al., 1993a], was used to characterize the location of addressins with regard to environmental factors and cytokines. For this purpose, two monoclonal antibodies, MECA 79 and MECA 367, specific for peripheral lymph node vascular addressin and for mucosal addressin (Peyer's patches), respectively, were bound to unstimulated HECa1O cells. Both mucosal and peripheral addressins were detected inside the cells and in cellular extracts of the resting cells. On the cell surface, both addressins could be evidenced on the same cells at a moderate level of expression. They partly mediate the EL4/EL4IL2 lymphoma cells' adhesion to HECa1O cells. Supernatants of cultured peripheral lymph node or Peyers' patch cells induced expression of MECA 79 or MECA 367 antigens, respectively, on the surface of HECa1O cells. Interleukins, IL-7, IL-3, and IL-8, induced the cell-surface appearance of MECA 79 but not of MECA 367 antigen. Therefore, the same cell type synthesizes both antigens, but the expression of these antigens on the cell surface is independently regulated, thus uncovering a characteristic tissue type-specific as well as environment-sensitive properties of microvascular endothelial cells.
Collapse
Affiliation(s)
- V Denis
- Centre de Biophysique Moléculaire, Centre National de la Recherche Scientifique and Université d'Orléans, France
| | | | | | | | | | | | | | | | | |
Collapse
|
44
|
Delaunay L, Denis V, Darmon PL, Catoire P, Bonnet F. Initial cardiac arrest is a risk factor for failure of organ procurement in brain-dead patients. Transplant Proc 1996; 28:2894. [PMID: 8908113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- L Delaunay
- Henri Mondor Hospital, Surgical Intensive Care Unit, Créteil, France
| | | | | | | | | |
Collapse
|
45
|
Bizouarne N, Denis V, Legrand A, Monsigny M, Kieda C. A SV-40 immortalized murine endothelial cell line from peripheral lymph node high endothelium expresses a new alpha-L-fucose binding protein. Biol Cell 1993; 79:209-18. [PMID: 7516229 DOI: 10.1016/0248-4900(93)90139-6] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Endothelial cells from mouse peripheral lymph nodes were immortalized by cationic liposome-mediated transfection using a plasmid construct containing both the gene coding for the large T antigen of simian virus 40 and a geneticin resistance gene suitable for selection. A cell line (HECa10) was isolated on the basis of its capacity to specifically bind fucoside carrying glycoconjugates; these cells present the main characteristics of endothelial cells: production of angiotensin converting enzyme and of factor VIII-related antigen. Upon stimulation, they express E-selectin which binds oligosaccharides containing the Lewisx determinant (Fuc alpha 3[Gal beta 4 GlcNAc beta 3Gal beta) and the MECA 79 addressin which is characteristic for the peripheral lymph node high endothelium and is a L-selectin ligand. HECa10 cells, as well as peripheral lymph node high endothelial cells in primary culture, express a second fucoside binding protein which differs from E-selectin. Indeed, this new fucoside-binding protein is constitutively expressed on unstimulated cells while E-selectin is not. Furthermore, HECa10 cells mediate selective lymphoid cell adhesion in a selectin/addressin-dependent mechanism, mainly inhibited by MECA 79 antibody and, in a fucose-binding lectin-dependent manner, mainly inhibited by the specific neoglycoprotein.
Collapse
Affiliation(s)
- N Bizouarne
- Laboratoire de Biochimie des Glycoconjugués et Lectines Endogènes, Université d'Orléans, France
| | | | | | | | | |
Collapse
|
46
|
Lacour J, Laplanche A, Delozier T, Berlie J, Mourali N, Julien JP, De Gislain C, Namer M, Petit JC, Denis V. Polyadenylic-polyuridylic acid plus locoregional and pelvic radiotherapy versus chemotherapy with CMF as adjuvants in operable breast cancer. A 6 1/2 year follow-up analysis of a randomized trial of the French Federation of Cancer Centers (F.F.C.C.). Breast Cancer Res Treat 1991; 19:15-21. [PMID: 1756263 DOI: 10.1007/bf01975200] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
In this study, patients with operable breast cancer T2 or T3, treated by mastectomy + axillary dissection and with invaded axillary nodes (N+), were randomized to receive either: 1) postoperative locoregional and pelvic radiotherapy (RX) and Poly(A).Poly(U) (AU), 60 mg IV once a week for 6 weeks, or 2) CMF (cyclophosphamide 100 mg/sqm P.O. on days 1-14, methotrexate 40 mg/sqm IV on day 1 and 8, fluorouracil 600 mg/sqm IV on day 1 and 8; monthly cycle, for 6 months. Between March 1982 and December 1985, 517 patients were enrolled, 257 of whom were treated by RX + AU and 260 with CMF. The main clinical, pathological and prognostic characteristics were equally distributed in the two groups. The present analysis was conducted after a mean follow-up of 69 months (S.D. = 13). There was no significant difference in overall survival (OS) between the two groups (test adjusted by center and menopausal status); the five-year OS rate was 74% in the RXAU group and 77% in the CMF group. Relapse-free survival (RFS) was significantly higher (p = 0.05) in the RXAU group compared to the MCF group; the five-year RFS rates were 57% and 46% in the two groups respectively. This short, well-tolerated combined RXAU treatment appears to be as efficient as CMF and might offer an alternative to chemo- or hormonotherapy, in case of contraindications to these treatments.
Collapse
Affiliation(s)
- J Lacour
- Institut Gustave-Roussy, Villejuif, France
| | | | | | | | | | | | | | | | | | | |
Collapse
|
47
|
Sains U, Denis V, Arango K, Khakas M. [Diagnosis and treatment of late hemopericarditis following heart surgery]. Anesteziol Reanimatol 1983:11-3. [PMID: 6670762] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
|