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Chaudhary V, Chaturvedi S, Wadhwa A, Chaudhary R, Gautam D, Sharma D, Kumar R, Mishra AK. Design, development and bio-evaluation of a novel radio-ligand 99mTc-THQ-DTPA as a sigma 2 receptor specific breast tumor imaging agent. Bioorg Med Chem 2024; 97:117515. [PMID: 38043245 DOI: 10.1016/j.bmc.2023.117515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 10/13/2023] [Accepted: 10/31/2023] [Indexed: 12/05/2023]
Abstract
Over-expression of sigma-2 receptor in cancer cells provides an opportunity to develop molecular probes for diagnosis, even for non-receptor specific malignancies like triple negative breast cancers. In this work, a novel sigma-2 receptor ligand [THQ-DTPA] has been synthesized and characterized using 6,7-dimethoxy-1,2,3,4-tetrahydroisoquinoline (THQ) and diethylenetriaminepentaacetic acid (DTPA). The ligand is further chelated with 99mTc for application as metal based radiotracer [99mTc-THQ-DTPA]. Radiolabelling with 99mTc was achieved in an excellent yield of 98.0 ± 0.5% using stannous chloride as a reducing agent. The radioligand was found to be stable in human serum up-to 24 h, bio-compatible with less than 4% hemolysis, and exhibited high binding with sigma receptors isolated from rat liver membrane (Kd of 16.32 ± 4.93 nM and Bmax of 0.5232 ± 0.06 pmol/mg). Bio-distribution studies in triple-negative breast tumor bearing nude mice showed high tumor uptake after 30 min of injection with tumor/muscle (T/M) ratio of 3.58 ± 0.09. At 240 min, the T/M ratio (2.84 ± 0.20) decreased by 35% when administered in sigma blocked tumor bearing mice (1.81 ± 0.16) suggesting the selectivity of the ligand. Tumor imaging in gamma camera indicated a contrast of 3.56 at 30 min p.i. The above findings indicate that the ligand 99mTc-THQ-DTPA binds to sigma-2 receptors with high affinity and has potential for triple-negative breast tumor imaging.
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Affiliation(s)
- Vishakha Chaudhary
- Kirori Mal College, University of Delhi, North Campus, University Enclave, Delhi 110007, India; Department of Radiological Nuclear and Imaging Science, INMAS, DRDO, Timarpur, Delhi 110054, India
| | - Shubhra Chaturvedi
- Department of Radiological Nuclear and Imaging Science, INMAS, DRDO, Timarpur, Delhi 110054, India.
| | - Anju Wadhwa
- University of California, San Francisco 94107, United States
| | - Ritika Chaudhary
- Department of Radiological Nuclear and Imaging Science, INMAS, DRDO, Timarpur, Delhi 110054, India; Dr. B.R. Ambedkar Center for Biomedical Research, University Enclave, Delhi 110007, India
| | - Divya Gautam
- Department of Radiological Nuclear and Imaging Science, INMAS, DRDO, Timarpur, Delhi 110054, India; Centre for Nanotechnology, Indian Institute of Technology, Roorkee 247667, India
| | - Deepika Sharma
- Department of Radiological Nuclear and Imaging Science, INMAS, DRDO, Timarpur, Delhi 110054, India; Department of Chemistry, Banaras Hindu University, Varanasi 221005, India
| | - Rupesh Kumar
- Kirori Mal College, University of Delhi, North Campus, University Enclave, Delhi 110007, India
| | - A K Mishra
- Department of Radiological Nuclear and Imaging Science, INMAS, DRDO, Timarpur, Delhi 110054, India.
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Mishra AK, Anjali K, Singh H, Mishra A, Kumar A. Synthesis and in silico studies of some new pyrrolidine derivatives and their biological evaluation for analgesic and anti-inflammatory activity. Ann Pharm Fr 2023; 81:801-813. [PMID: 36931432 DOI: 10.1016/j.pharma.2023.03.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Revised: 03/10/2023] [Accepted: 03/10/2023] [Indexed: 03/17/2023]
Abstract
BACKGROUND An array of commercially viable intermediate molecules necessary for the synthesis of a variety of bioactive molecules are chemically synthesized by pyrrolidine and its derivatives, which play a significant role in drug design and development process. AIM The aim of the present research work was to explore the synthesis of some new pyrrolidine derivatives and to perform their in silico studies and finally evaluation of analgesic and anti-inflammatory activity. OBJECTIVE The purpose of this study was to synthesis new pyrrolidine derivatives, examine how they affected the COX-1 and COX-2 enzymes computationally, and to screen their in vivo analgesic and anti-inflammatory activity on laboratory animals. METHOD The new pyrrolidine derivatives were synthesized by condensing N-(3-acetylphenyl)-2-(pyrrolidin-1-yl)acetamide with substituted aniline in ethanol in the presence of catalytic amounts of glacial acetic acid. The structures of novel pyrrolidine derivatives were characterised using IR, NMR, and mass spectroscopy. Several molecular properties of the newly synthesized derivatives were calculated in order to evaluate the nature of the drug-like candidate. A specific reference cyclooxygenase-1 (COX-1) and cyclooxygenase-2 (COX-2) enzyme was used to dock the newly synthesized pyrrolidine derivatives. RESULTS From the observed data, it was noted that amongst all newly synthesized compounds, A-1 and A-4 exhibited the highest anti-inflammatory and analgesic effects, respectively. CONCLUSION On the basis of findings of present research, it was concluded that A-1 and A-4 might be utilized as a promising new lead compound for Non-Steroidal Anti-Inflammatory Drug (NSAIDs) development.
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Affiliation(s)
- A K Mishra
- Drug Design Laboratory, Pharmacy Academy, IFTM University, 244001 Moradabad, India.
| | - Km Anjali
- Drug Design Laboratory, School of Pharmaceutical Sciences, IFTM University, 244001 Moradabad, India
| | - H Singh
- Drug Design Laboratory, School of Pharmaceutical Sciences, IFTM University, 244001 Moradabad, India
| | - A Mishra
- School of Pharmaceutical Sciences, Delhi Pharmaceutical Sciences & Research University, 110017 New Delhi, India
| | - A Kumar
- Drug Design Laboratory, School of Pharmaceutical Sciences, IFTM University, 244001 Moradabad, India
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Sharma R, Sehrawat R, Ahlawat S, Sharma V, Thakur MS, Mishra AK, Arora R, Tantia MS. Functional Quality Characteristics of the Meat from a Dual-Purpose Poultry Crossbreed Suitable for Backyard Rearing in Comparison to Commercial Broilers. Foods 2023; 12:2434. [PMID: 37444172 DOI: 10.3390/foods12132434] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Revised: 06/05/2023] [Accepted: 06/14/2023] [Indexed: 07/15/2023] Open
Abstract
Backyard poultry farming contributes to food security, nutrition, and the regular income of rural farmers in India. Their products have a niche market here and fetch higher prices than those of commercial poultry. Improved varieties are being developed to overcome the slow growth, late sexual maturity, and low production of indigenous breeds, while retaining their positive attributes. A comprehensive study was conducted to analyze the functional attributes of meat from the Jabalpur color (JBC), a colored, improved dual-purpose synthetic line, developed by Nanaji Deshmukh Veterinary Science University, Jabalpur, India. The birds were managed in a deep litter system under a backyard type of housing (night shelter and free range). Primal meat cuts (breast and thigh) of the male birds (n = 20/group) were evaluated at the age of marketing. The corresponding attributes were compared with the results obtained for commercial Cobb (400) broilers. The protein concentration of JBC breast (25.65 ± 0.39 g/100 g of tissue) and thigh (19.04 ± 0.23 g/100 g of tissue) meat was superior (p ≤ 0.05) to that of Cobb broilers. Established assays (in vitro) identified a better (p ≤ 0.05) antioxidation capacity in the JBC meat. High-performance liquid chromatography confirmed a considerable quantity of functional biomolecules (carnosine, anserine, and creatine) in the JBC breast and thigh meat extracts. The average carnosine concentration (mg/g of tissue) was 2.66 ± 0.09 and 1.11 ± 0.04 in the JBC breast and thigh meat, respectively. The mRNA expression was quantified by qRT-PCR for the carnosine-related genes: β-alanine transporter (SLC36A1), carnosine-synthesizing enzyme (CARNS1), and carnosine-degrading enzyme (CNDP2); this explained the comparable carnosine in the JBC and Cobb meat. Meat extracts from both genetic groups (JBC and Cobb) had high anti-glycation potential. Higher protein content and antioxidant capacity, along with the bioactive dipeptides in the JBC meat, herald exciting research opportunities for its use in improving the traditional backyard poultry farming system.
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Affiliation(s)
- Rekha Sharma
- ICAR-National Bureau of Animal Genetic Resources, Karnal 132 001, India
| | - Renuka Sehrawat
- ICAR-National Bureau of Animal Genetic Resources, Karnal 132 001, India
| | - Sonika Ahlawat
- ICAR-National Bureau of Animal Genetic Resources, Karnal 132 001, India
| | - Vivek Sharma
- ICAR-National Dairy Research Institute, Karnal 132 001, India
| | - Mohan Singh Thakur
- Department of Animal Genetics and Breeding, Nanaji Deshmukh Veterinary Science University, Jabalpur 482 001, India
| | - A K Mishra
- ICAR-National Bureau of Animal Genetic Resources, Karnal 132 001, India
| | - Reena Arora
- ICAR-National Bureau of Animal Genetic Resources, Karnal 132 001, India
| | - M S Tantia
- ICAR-National Bureau of Animal Genetic Resources, Karnal 132 001, India
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Wrapp D, Ye X, Ku Z, Su H, Jones HG, Wang N, Mishra AK, Freed DC, Li F, Tang A, Li L, Jaijyan DK, Zhu H, Wang D, Fu TM, Zhang N, An Z, McLellan JS. Structural basis for HCMV Pentamer recognition by neuropilin 2 and neutralizing antibodies. Sci Adv 2022; 8:eabm2546. [PMID: 35275718 PMCID: PMC8916728 DOI: 10.1126/sciadv.abm2546] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Human cytomegalovirus (HCMV) encodes multiple surface glycoprotein complexes to infect a variety of cell types. The HCMV Pentamer, composed of gH, gL, UL128, UL130, and UL131A, enhances entry into epithelial, endothelial, and myeloid cells by interacting with the cell surface receptor neuropilin 2 (NRP2). Despite the critical nature of this interaction, the molecular determinants that govern NRP2 recognition remain unclear. Here, we describe the cryo-EM structure of NRP2 bound to Pentamer. The high-affinity interaction between these proteins is calcium dependent and differs from the canonical carboxyl-terminal arginine (CendR) binding that NRP2 typically uses. We also determine the structures of four neutralizing human antibodies bound to the HCMV Pentamer to define susceptible epitopes. Two of these antibodies compete with NRP2 binding, but the two most potent antibodies recognize a previously unidentified epitope that does not overlap the NRP2-binding site. Collectively, these findings provide a structural basis for HCMV tropism and antibody-mediated neutralization.
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Affiliation(s)
- Daniel Wrapp
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA
| | - Xiaohua Ye
- Texas Therapeutics Institute, Brown Foundation Institute of Molecular Medicine, University of Texas Health Science Center at Houston, Houston, TX 77030, USA
| | - Zhiqiang Ku
- Texas Therapeutics Institute, Brown Foundation Institute of Molecular Medicine, University of Texas Health Science Center at Houston, Houston, TX 77030, USA
| | - Hang Su
- Texas Therapeutics Institute, Brown Foundation Institute of Molecular Medicine, University of Texas Health Science Center at Houston, Houston, TX 77030, USA
| | - Harrison G. Jones
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA
| | - Nianshuang Wang
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA
| | - Akaash K. Mishra
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA
| | - Daniel C. Freed
- Merck Research Laboratories, Merck & Co. Inc., Kenilworth, NJ 07033, USA
| | - Fengsheng Li
- Merck Research Laboratories, Merck & Co. Inc., Kenilworth, NJ 07033, USA
| | - Aimin Tang
- Merck Research Laboratories, Merck & Co. Inc., Kenilworth, NJ 07033, USA
| | - Leike Li
- Texas Therapeutics Institute, Brown Foundation Institute of Molecular Medicine, University of Texas Health Science Center at Houston, Houston, TX 77030, USA
| | - Dabbu Kumar Jaijyan
- Department of Microbiology, Biochemistry and Molecular Genetics, Rutgers New Jersey Medical School, Newark, NJ 07103, USA
| | - Hua Zhu
- Department of Microbiology, Biochemistry and Molecular Genetics, Rutgers New Jersey Medical School, Newark, NJ 07103, USA
| | - Dai Wang
- Merck Research Laboratories, Merck & Co. Inc., Kenilworth, NJ 07033, USA
| | - Tong-Ming Fu
- Texas Therapeutics Institute, Brown Foundation Institute of Molecular Medicine, University of Texas Health Science Center at Houston, Houston, TX 77030, USA
| | - Ningyan Zhang
- Texas Therapeutics Institute, Brown Foundation Institute of Molecular Medicine, University of Texas Health Science Center at Houston, Houston, TX 77030, USA
| | - Zhiqiang An
- Texas Therapeutics Institute, Brown Foundation Institute of Molecular Medicine, University of Texas Health Science Center at Houston, Houston, TX 77030, USA
- Corresponding author. (Z.A.); (J.S.M.)
| | - Jason S. McLellan
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA
- Corresponding author. (Z.A.); (J.S.M.)
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Bhargava K, Gururaj K, Aseri GK, Nath G, Singh NP, Pawaiya RVS, Kumar A, Mishra AK, Yadav VB, Jain N. Bacteriophages: A possible solution to combat enteropathogenic Escherichia coli infections in neonatal goats. Lett Appl Microbiol 2022; 74:707-717. [PMID: 35060159 DOI: 10.1111/lam.13656] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Revised: 01/12/2022] [Accepted: 01/17/2022] [Indexed: 11/29/2022]
Abstract
Due to awareness and benefits of goat rearing in developing economies, goats' significance is increasing. Unfortunately, these ruminants are threatened via multiple bacterial pathogens such as Enteropathogenic Escherichia coli (EPEC). In goat kids and lambs, EPEC causes gastrointestinal disease leading to substantial economic losses for farmers and may also pose a threat to public health via the spread of zoonotic diseases. Management of infection is primarily based on antibiotics, but the need for new therapeutic measures as an alternative to antibiotics is becoming vital because of the advent of antimicrobial resistance (AMR). The prevalence of EPEC was established using bfpA gene, uspA gene, and Stx1 gene, followed by phylogenetic analysis using Stx1 gene. The lytic activity of the isolated putative coliphages was tested on multi-drug resistant strains of EPEC. It was observed that a PCR based approach is more effective and rapid as compared to phenotypic tests of Escherichia coli virulence. It was also established that the isolated bacteriophages exhibited potent antibacterial efficacy in-vitro, with some of the isolates (16%) detected as T4 and T4-like phages based on gp23 gene. Hence, bacteriophages as therapeutic agents may be explored as an alternative to antibiotics in managing public, livestock and environmental health in this era of AMR.
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Affiliation(s)
- Kanika Bhargava
- Amity Institute of Microbial Technology, Amity University Rajasthan, Jaipur (Rajasthan), 303 002, India.,Department of Microbiology, IMS, Banaras Hindu University, Varanasi, UP, 221005, India
| | - K Gururaj
- Division of Animal Health, CIRG, Mathura (UP), 281122, India
| | - G K Aseri
- Amity Institute of Microbial Technology, Amity University Rajasthan, Jaipur (Rajasthan), 303 002, India
| | - Gopal Nath
- Department of Microbiology, IMS, Banaras Hindu University, Varanasi, UP, 221005, India
| | | | - R V S Pawaiya
- Division of Animal Health, CIRG, Mathura (UP), 281122, India
| | - Ashok Kumar
- Division of Animal Health, CIRG, Mathura (UP), 281122, India
| | - A K Mishra
- Division of Animal Health, CIRG, Mathura (UP), 281122, India
| | | | - Neelam Jain
- Amity Institute of Biotechnology, Amity University Rajasthan, Jaipur (Rajasthan), 303 002, India
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Mishra AK, Hellert J, Freitas N, Guardado-Calvo P, Haouz A, Fels JM, Maurer DP, Abelson DM, Bornholdt ZA, Walker LM, Chandran K, Cosset FL, McLellan JS, Rey FA. Structural basis of synergistic neutralization of Crimean-Congo hemorrhagic fever virus by human antibodies. Science 2022; 375:104-109. [PMID: 34793197 PMCID: PMC9771711 DOI: 10.1126/science.abl6502] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Crimean-Congo hemorrhagic fever virus (CCHFV) is the most widespread tick-borne zoonotic virus, with a 30% case fatality rate in humans. Structural information is lacking in regard to the CCHFV membrane fusion glycoprotein Gc—the main target of the host neutralizing antibody response—as well as antibody–mediated neutralization mechanisms. We describe the structure of prefusion Gc bound to the antigen-binding fragments (Fabs) of two neutralizing antibodies that display synergy when combined, as well as the structure of trimeric, postfusion Gc. The structures show the two Fabs acting in concert to block membrane fusion, with one targeting the fusion loops and the other blocking Gc trimer formation. The structures also revealed the neutralization mechanism of previously reported antibodies against CCHFV, providing the molecular underpinnings essential for developing CCHFV–specific medical countermeasures for epidemic preparedness.
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Affiliation(s)
- Akaash K. Mishra
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, USA 78712
| | - Jan Hellert
- Structural Virology Unit, Institut Pasteur, CNRS UMR 3569, 25-28 rue du Docteur Roux, Cedex 15, Paris, France 75724
| | - Natalia Freitas
- CIRI-Centre International de Recherche en Infectiologie, Univ Lyon, Université Claude Bernard Lyon 1, Inserm, U1111, CNRS, UMR5308, ENS Lyon, 46 allée d’Italie, Lyon, France 69007
| | - Pablo Guardado-Calvo
- Structural Virology Unit, Institut Pasteur, CNRS UMR 3569, 25-28 rue du Docteur Roux, Cedex 15, Paris, France 75724
| | - Ahmed Haouz
- Crystallography Platform C2RT, Institut Pasteur, CNRS UMR 3528, 25-28 rue du Docteur Roux, Cedex 15, Paris, France 75724
| | - J. Maximilian Fels
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, New York, USA 10461
| | | | | | | | | | - Kartik Chandran
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, New York, USA 10461
| | - François-Loïc Cosset
- CIRI-Centre International de Recherche en Infectiologie, Univ Lyon, Université Claude Bernard Lyon 1, Inserm, U1111, CNRS, UMR5308, ENS Lyon, 46 allée d’Italie, Lyon, France 69007
| | - Jason S. McLellan
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, USA 78712,Correspondence: (J.S.M.); (F.A.R)
| | - Felix A. Rey
- Structural Virology Unit, Institut Pasteur, CNRS UMR 3569, 25-28 rue du Docteur Roux, Cedex 15, Paris, France 75724,Correspondence: (J.S.M.); (F.A.R)
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Guha Niyogi S, Kumar B, Puri GD, Negi S, Mishra AK, Thingnam SKS. Cardiac output monitoring using transthoracic echocardiography in children after cardiac surgery-an observational study of feasibility and concordance with transpulmonary thermodilution. Eur Heart J 2021. [DOI: 10.1093/eurheartj/ehab724.1516] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Background
Transthoracic echocardiography (TTE) is commonly used after pediatric cardiac surgery to monitor cardiac function and adequacy of surgery; however it depends on the availability of good echo window and operator skill [1]. Transpulmonary thermodilution (TPTD) is feasible along with calibrated continuous cardiac output measurement in children but seldom used due to cost and the need for a specialized catheter [2].
We hypothesized that TTE would be as good as TPTD, but limited in feasibility following pediatric cardiac surgery. Hence, the concordance, agreement as well as feasibility and trending of cardiac output monitoring by TTE was compared against a reference TPTD method in real-world usage in children after congenital heart surgery.
Methods
This was a secondary analysis of data from a previously registered and conducted study in our unit. TPTD monitoring was instituted in children undergoing congenital heart disease repair on cardiopulmonary bypass with a 3F femoral arterial cannula and a central venous injectate temperature sensor.
Cardiac output was also measured by transthoracic echocardiography by measurement of the left ventricular outflow tract (LVOT) diameter, LVOT velocity time integral (VTI) and the heart rate as previously described [3,4]. Measurements were taken after arrival in the ICU, and every 12 hours till after extubation. Correlation, Bland-Altman analysis and polar analysis was done for cardiac output measured by TPTD and TTE.
Results
TTE and TPTD measurements of cardiac output correlated well (Pearson's correlation coefficient 0.94; 95% CI 0.90–0.96) (Fig. 1A). Bland Altman analysis showed a mean bias of 0.15 l/min and upper and lower limits of agreement of 0.81 and −0.51 l/min respectively (Fig. 1B). Cardiac output measurement by TTE was possible in 72 instances while TPTD allowed measurement in all 113 instances. Hence, TTE was not feasible in 41 instances across 14 patients, including 19 instances in acyanotic and 22 instances in cyanotic patients. Polar analysis revealed acceptable trending.
Conclusions
TTE derived cardiac output demonstrated good correlation, minimal bias and narrow limits of agreement versus TPTD, and was feasible in most cases. This suggests TTE is an acceptable cardiac output measurement modality post pediatric cardiac surgery, as in adults [5]. TPTD-based continuous cardiac output monitoring might have a complementary role in pediatric cardiac critical care, particularly in high risk cases.
Funding Acknowledgement
Type of funding sources: Public Institution(s). Main funding source(s): Institutional Special Research Grant from Postgraduate Institute of Medical Education and Research, Chandigarh, India. Figure 1
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Affiliation(s)
- S Guha Niyogi
- Postgraduate Institute of Medical Education and Research (PGIMER), Department of Anaesthesia and Intensive Care, Chandigarh, India
| | - B Kumar
- Postgraduate Institute of Medical Education and Research (PGIMER), Department of Anaesthesia and Intensive Care, Chandigarh, India
| | - G D Puri
- Postgraduate Institute of Medical Education and Research (PGIMER), Department of Anaesthesia and Intensive Care, Chandigarh, India
| | - S Negi
- Postgraduate Institute of Medical Education and Research (PGIMER), Department of Anaesthesia and Intensive Care, Chandigarh, India
| | - A K Mishra
- Postgraduate Institute of Medical Education and Research (PGIMER), Department of Cardiothoracic and Vascular Surgery, Chandigarh, India
| | - S K S Thingnam
- Postgraduate Institute of Medical Education and Research (PGIMER), Department of Cardiothoracic and Vascular Surgery, Chandigarh, India
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Kumar NP, Kumar A, Panneer D, Abidha S, Muthukumaravel S, Sankari T, Ajithlal PM, Mathew J, Koothradan S, Paramasivan R, Muniyaraj M, Singh H, Saxena R, Vijayachari P, Sunish IP, Shriram AN, Dutta P, Patgiri SJ, Bhattacharyya DR, Hoti SL, Chattopadhyay D, Roy S, Mahapatra N, Pati S, Chand G, Mishra AK, Barde P, Jambulingam P. Nation-wide vector surveillance on Zika and Dengue did not indicate transmission of the American lineage-pandemic Zika virus in India. Int J Infect Dis 2021; 113:119-124. [PMID: 34601144 DOI: 10.1016/j.ijid.2021.09.074] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Revised: 09/17/2021] [Accepted: 09/26/2021] [Indexed: 11/16/2022] Open
Abstract
OBJECTIVES Following the Public Health Emergency of International Concern declared on Zika by the World Health Organization during 2016, the Indian Council of Medical Research carried out nationwide vector surveillance for Zika and Dengue viruses (ZIKV and DENV) in India as a preparedness measure in 2016-19. METHODS High-risk zones distributed to 49 Districts in 14 states/union territories were included in the study. Seven ICMR institutions participated, following a standard operating protocol. Aedes specimens sampled weekly were processed by multiplex reverse transcriptase-polymerase chain reaction (RT-PCR) for ZIKV/DENV and random samples crosschecked with real-time RT-PCR for ZIKV. RESULTS Altogether, 79 492 Aedes specimens in 6492 pools were processed; 3 (0.05%) and 63 (0.97%) pools, respectively, were found positive for ZIKV and DENV. ZIKV infections were recorded in Aedes aegypti sampled during the 2018 sporadic Zika outbreak in Jaipur, Rajasthan. However, these belonged to the Asian lineage of the virus, already circulating in the country. Both Ae. aegypti and Aedes albopictus distributed to 8 states/union territories were found to be infected with DENV. Both sexes of Ae. albopictus were infected, indicating transovarial transmission. CONCLUSION This investigation evinced no active transmission of the American lineage-pandemic Zika virus in India during the pandemic period.
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Affiliation(s)
- N Pradeep Kumar
- ICMR-Vector Control Research Centre Field Station, Kottayam, Kerala, India.
| | - Ashwani Kumar
- ICMR-Vector Control Research Centre, Puducherry, India
| | - D Panneer
- ICMR-Vector Control Research Centre, Puducherry, India
| | - S Abidha
- ICMR-Vector Control Research Centre Field Station, Kottayam, Kerala, India
| | | | - T Sankari
- ICMR-Vector Control Research Centre, Puducherry, India
| | - P M Ajithlal
- ICMR-Vector Control Research Centre Field Station, Kottayam, Kerala, India
| | - Jessu Mathew
- ICMR-Vector Control Research Centre Field Station, Kottayam, Kerala, India
| | - Suhana Koothradan
- ICMR-Vector Control Research Centre Field Station, Kottayam, Kerala, India
| | - R Paramasivan
- ICMR-Vector Control Research Centre Field Station, Madurai, Tamil Nadu, India
| | - M Muniyaraj
- ICMR-Vector Control Research Centre Field Station, Madurai, Tamil Nadu, India
| | - Himmat Singh
- ICMR- National Institute for Malaria Research, New Delhi, India
| | - Rekha Saxena
- ICMR- National Institute for Malaria Research, New Delhi, India
| | - P Vijayachari
- ICMR- Regional Medical Research Centre, Port Blair, Andaman Nicobar Islands, India
| | - I P Sunish
- ICMR- Regional Medical Research Centre, Port Blair, Andaman Nicobar Islands, India
| | - A N Shriram
- ICMR-Vector Control Research Centre, Puducherry, India
| | - Prafulla Dutta
- ICMR-Regional Medical Research Centre (NE), Dibrugarh, Assam, India
| | | | | | - S L Hoti
- ICMR-National Institute of Medicinal Plants Research, Belagavi, Karnataka, India
| | - D Chattopadhyay
- ICMR-National Institute of Medicinal Plants Research, Belagavi, Karnataka, India
| | - Subarna Roy
- ICMR-National Institute of Medicinal Plants Research, Belagavi, Karnataka, India
| | - Namita Mahapatra
- ICMR- Regional Medical Research Centre, Bhubaneswar, Odisha, India
| | - Sanghamitra Pati
- ICMR- Regional Medical Research Centre, Bhubaneswar, Odisha, India
| | - Gyan Chand
- ICMR- National Institute of Research in Tribal Health, Jabalpur, Madhya Pradesh, India
| | - A K Mishra
- ICMR- National Institute of Research in Tribal Health, Jabalpur, Madhya Pradesh, India
| | - Pradip Barde
- ICMR- National Institute of Research in Tribal Health, Jabalpur, Madhya Pradesh, India
| | - P Jambulingam
- ICMR-Vector Control Research Centre, Puducherry, India
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Fels JM, Maurer DP, Herbert AS, Wirchnianski AS, Vergnolle O, Cross RW, Abelson DM, Moyer CL, Mishra AK, Aguilan JT, Kuehne AI, Pauli NT, Bakken RR, Nyakatura EK, Hellert J, Quevedo G, Lobel L, Balinandi S, Lutwama JJ, Zeitlin L, Geisbert TW, Rey FA, Sidoli S, McLellan JS, Lai JR, Bornholdt ZA, Dye JM, Walker LM, Chandran K. Protective neutralizing antibodies from human survivors of Crimean-Congo hemorrhagic fever. Cell 2021; 184:3486-3501.e21. [PMID: 34077751 DOI: 10.1016/j.cell.2021.05.001] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Revised: 03/19/2021] [Accepted: 04/29/2021] [Indexed: 12/31/2022]
Abstract
Crimean-Congo hemorrhagic fever virus (CCHFV) is a World Health Organization priority pathogen. CCHFV infections cause a highly lethal hemorrhagic fever for which specific treatments and vaccines are urgently needed. Here, we characterize the human immune response to natural CCHFV infection to identify potent neutralizing monoclonal antibodies (nAbs) targeting the viral glycoprotein. Competition experiments showed that these nAbs bind six distinct antigenic sites in the Gc subunit. These sites were further delineated through mutagenesis and mapped onto a prefusion model of Gc. Pairwise screening identified combinations of non-competing nAbs that afford synergistic neutralization. Further enhancements in neutralization breadth and potency were attained by physically linking variable domains of synergistic nAb pairs through bispecific antibody (bsAb) engineering. Although multiple nAbs protected mice from lethal CCHFV challenge in pre- or post-exposure prophylactic settings, only a single bsAb, DVD-121-801, afforded therapeutic protection. DVD-121-801 is a promising candidate suitable for clinical development as a CCHFV therapeutic.
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Affiliation(s)
- J Maximilian Fels
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | | | - Andrew S Herbert
- U.S. Army Medical Research Institute of Infectious Diseases, Fort Detrick, MD 21702, USA; The Geneva Foundation, Tacoma, WA 98402, USA
| | - Ariel S Wirchnianski
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA; Deparment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | - Olivia Vergnolle
- Deparment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | - Robert W Cross
- Galveston National Laboratory, University of Texas Medical Branch, Galveston, TX 77550, USA; Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, TX 77550, USA
| | | | | | - Akaash K Mishra
- Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA
| | - Jennifer T Aguilan
- Department of Pathology, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | - Ana I Kuehne
- U.S. Army Medical Research Institute of Infectious Diseases, Fort Detrick, MD 21702, USA
| | | | - Russell R Bakken
- U.S. Army Medical Research Institute of Infectious Diseases, Fort Detrick, MD 21702, USA
| | - Elisabeth K Nyakatura
- Deparment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | - Jan Hellert
- Structural Virology Unit, Department of Virology, CNRS UMR 3569, Institut Pasteur, Paris 75724, France
| | - Gregory Quevedo
- Deparment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | - Leslie Lobel
- Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel
| | | | | | - Larry Zeitlin
- Mapp Biopharmaceutical, Inc., San Diego, CA 92121, USA
| | - Thomas W Geisbert
- Galveston National Laboratory, University of Texas Medical Branch, Galveston, TX 77550, USA; Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, TX 77550, USA
| | - Felix A Rey
- Structural Virology Unit, Department of Virology, CNRS UMR 3569, Institut Pasteur, Paris 75724, France
| | - Simone Sidoli
- Deparment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | - Jason S McLellan
- Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA
| | - Jonathan R Lai
- Deparment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | | | - John M Dye
- U.S. Army Medical Research Institute of Infectious Diseases, Fort Detrick, MD 21702, USA.
| | - Laura M Walker
- Adimab, LLC, Lebanon, NH 03766, USA; Adagio Therapeutics, Inc., Waltham, MA 02451, USA.
| | - Kartik Chandran
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
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Affiliation(s)
- A K Mishra
- Department of Internal Medicine, Saint Vincent Hospital, 123 Summer Street, Worcester, MA, 01608, USA
| | - A Lahiri
- Department of Cardiology, Flinders Medical Centre, Bedford Park, South Australia, Australia
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11
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Mishra AK, Sinha B, Kumar R, Barth M, Hakkim H, Kumar V, Kumar A, Datta S, Guenther A, Sinha V. Cropland trees need to be included for accurate model simulations of land-atmosphere heat fluxes, temperature, boundary layer height, and ozone. Sci Total Environ 2021; 751:141728. [PMID: 32890797 DOI: 10.1016/j.scitotenv.2020.141728] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2020] [Revised: 08/07/2020] [Accepted: 08/14/2020] [Indexed: 06/11/2023]
Abstract
Trees significantly impact land-atmosphere feedbacks through evapotranspiration, photosynthesis and isoprene emissions. These processes influence the local microclimate, air quality and can mitigate temperature extremes and sequester carbon dioxide. Despite such importance, currently only 5 out of 15 atmospheric chemistry climate models even partially account for the presence of cropland trees. We first show that the tree cover over intensely farmed regions in Asia, Australia and South America is significantly underestimated (e.g. only 1-3% tree cover over north-India) in the Model of Emissions of Gases and Aerosol from Nature (MEGAN) and absent in Noah land-surface module of the Weather Research and Forecasting (WRF-Chem) Model. By including the actual tree cover (~10%) over the north-west Indo Gangetic Plain in the Noah land-surface module of the WRF-Chem and the MEGAN module, during the rice growing monsoon season in August, we find that the latent heat flux alone increases by 100%-300% while sensible heat flux reduces by 50%-100%, leading to a reduction in daytime boundary layer height by 200-400 m. This greatly improves agreement between the modelled and measured temperature, boundary layer height and surface ozone, which were earlier overestimated and isoprene and its oxidation products which were earlier underestimated. Mitigating peak daytime temperatures and ozone improves rice production by 10 to 20%. Our findings from north west Indo-Gangetic Plain establish that such plantations mitigate heat stress, and have beneficial effects on crop yields while also sequestering carbon. Expanding agroforestry practices to 50% of the cropland area could result in up to 40% yield gain regionally. Implementing such strategies globally could increase crop production and sequester 0.3-30 GtC per year, and therefore future climate mitigation and food security efforts should consider stakeholder participation for increased cropland agroforestry in view of its beneficial effects.
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Affiliation(s)
- A K Mishra
- Department of Earth and Environmental Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, S.A.S Nagar, Manauli PO, Punjab 140306, India
| | - B Sinha
- Department of Earth and Environmental Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, S.A.S Nagar, Manauli PO, Punjab 140306, India
| | - R Kumar
- National Center for Atmospheric Research, Boulder, CO, USA
| | - M Barth
- National Center for Atmospheric Research, Boulder, CO, USA
| | - H Hakkim
- Department of Earth and Environmental Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, S.A.S Nagar, Manauli PO, Punjab 140306, India
| | - V Kumar
- Department of Earth and Environmental Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, S.A.S Nagar, Manauli PO, Punjab 140306, India
| | - A Kumar
- Department of Earth and Environmental Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, S.A.S Nagar, Manauli PO, Punjab 140306, India
| | - S Datta
- Department of Earth and Environmental Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, S.A.S Nagar, Manauli PO, Punjab 140306, India
| | | | - V Sinha
- Department of Earth and Environmental Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, S.A.S Nagar, Manauli PO, Punjab 140306, India.
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12
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Mishra AK, Cabaço S, de Los Santos CB, Apostolaki ET, Vizzini S, Santos R. Long-term effects of elevated CO 2 on the population dynamics of the seagrass Cymodocea nodosa: Evidence from volcanic seeps. Mar Pollut Bull 2021; 162:111824. [PMID: 33162054 DOI: 10.1016/j.marpolbul.2020.111824] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Revised: 09/25/2020] [Accepted: 10/30/2020] [Indexed: 06/11/2023]
Abstract
Population reconstruction techniques was used to assess for the first time the population dynamics of a seagrass, Cymodocea nodosa, exposed to long-term elevated CO2 near three volcanic seeps and compared them with reference sites away from the seeps. Under high CO2, the density of shoots and of individuals (apical shoots), and the vertical and horizontal elongation and production rates, were higher than at the reference sites. Nitrogen limitation effects on rhizome elongation and production rates and on biomass were more evident than CO2 as these were highest at the location where the limitation of nitrogen was highest. At the seep where the availability of CO2 was highest and nitrogen lowest, density of shoots and individuals were highest, probably due to CO2 effects on shoot differentiation and induced reproductive output, respectively. At the three seeps, there was higher short- and long-term shoot recruitment than at the reference sites, and growth rates was around zero, indicating that elevated CO2 increases the turnover of C. nodosa shoots.
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Affiliation(s)
- A K Mishra
- Marine Plant Ecology Research Group (ALGAE), Centre of Marine Sciences (CCMAR), University of Algarve, Faro 8005-139, Portugal; School of Biological and Marine Sciences, Faculty of Science and Engineering, University of Plymouth, Portland Square, Drake Circus, Plymouth PL48LA, UK.
| | - S Cabaço
- Marine Plant Ecology Research Group (ALGAE), Centre of Marine Sciences (CCMAR), University of Algarve, Faro 8005-139, Portugal
| | - C B de Los Santos
- Marine Plant Ecology Research Group (ALGAE), Centre of Marine Sciences (CCMAR), University of Algarve, Faro 8005-139, Portugal
| | - E T Apostolaki
- Institute of Oceanography, Hellenic Center for Marine Research (HCMR), PO Box 2214, 71003 Heraklion-Crete, Greece
| | - S Vizzini
- Department of Earth and Marine Sciences, University of Palermo, via Archirafi 18, 90123 Palermo, Italy; CoNISMa, Piazzale Flaminio 9, 00196 Roma, Italy
| | - R Santos
- Marine Plant Ecology Research Group (ALGAE), Centre of Marine Sciences (CCMAR), University of Algarve, Faro 8005-139, Portugal
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Nath BJ, Mishra AK, Sarma HK. Assessment of quorum sensing effects of tyrosol on fermentative performance by chief ethnic fermentative yeasts from northeast India. J Appl Microbiol 2020; 131:728-742. [PMID: 33103297 DOI: 10.1111/jam.14908] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Revised: 09/28/2020] [Accepted: 10/21/2020] [Indexed: 11/29/2022]
Abstract
AIM Tyrosol, a quorum sensing molecule in yeasts, was reported to reduce lag phase and induces hyphae formation during cell proliferation. However, evidence of any enhancing effect of tyrosol in cellular proliferation within fermentative environment is unclear. In this investigation, selected yeast cells were assessed for their ability to synthesize tyrosol followed by examining the role of the molecule during fermentation. METHODS AND RESULTS Tyrosols were characterized in four fermentative yeasts viz., Saccharomyces cerevisiae, Wickerhamomyces anomalus, Candida glabrata and Candida tropicalis isolated from traditional fermentative cakes of northeast India. All the isolates synthesized tyrosol while C. tropicalis exhibited filamentous growth in response to tyrosols retrieved from other isolates. Purified tyrosols showed protective behaviour in C. tropicalis and S. cerevisiae under ethanol mediated oxidative stress. During fermentation, tyrosol significantly enhanced growth of W. anomalus in starch medium while C. tropicalis exhibited growth enhancement in starch and glucose sources. The chief fermentative yeast S. cerevisiae showed notable enhancement in fermentative capacity in starch medium under the influence of tyrosol con-commitment of ethanol production. CONCLUSION The study concludes that tyrosol exerts unusual effect in cellular growth and fermentative ability of both Saccharomyces and non-Saccharomyces yeasts. SIGNIFICANCE AND IMPACT OF THE STUDY This is the first report of expression of tyrosol by non-conventional yeasts, where the molecule was found to exert enhancing effect during fermentation, thereby augmenting the process of metabolite production during traditional fermentation.
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Affiliation(s)
- B J Nath
- Microbial Communication and Fungal Biology Group, Department of Biotechnology, Gauhati University, Guwahati, Assam, India
| | - A K Mishra
- Laboratory of Microbial Genetics, Department of Botany, Banaras Hindu University, Varanasi, Uttar Pradesh, India
| | - H K Sarma
- Microbial Communication and Fungal Biology Group, Department of Biotechnology, Gauhati University, Guwahati, Assam, India
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14
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Mishra AK, Sinha V. Emission drivers and variability of ambient isoprene, formaldehyde and acetaldehyde in north-west India during monsoon season. Environ Pollut 2020; 267:115538. [PMID: 33254592 DOI: 10.1016/j.envpol.2020.115538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Revised: 08/13/2020] [Accepted: 08/25/2020] [Indexed: 06/12/2023]
Abstract
Isoprene, formaldehyde and acetaldehyde are important reactive organic compounds which strongly impact atmospheric oxidation processes and formation of tropospheric ozone. Monsoon meteorology and the topography of Himalayan foothills cause surface emissions to get rapidly transported both horizontally and vertically, thereby influencing atmospheric processes in distant regions. Further in monsoon, Indo-Gangetic Plain is a major rice growing region of the world and daytime hourly ozone can frequently exceed phytotoxic dose of 40 ppb O3. However, the sources and ambient variability of these compounds which are potent ozone precursors are unknown. Here, we investigate the sources and photochemical processes driving their emission/formation during monsoon season from a sub-urban site at the foothills of the Himalayas. The measurements were performed in July, August and September using a high sensitivity mass spectrometer. Average ambient mixing ratios (±1σ variability) of isoprene, formaldehyde, acetaldehyde, and the sum of methyl vinyl ketone and methacrolein (MVK+MACR), were 1.4 ± 0.3 ppb, 5.7 ± 0.9 ppb, 4.5 ± 2.0 ppb, 0.75 ± 0.3 ppb, respectively, and much higher than summertime values in May. For isoprene these values were comparable to mixing ratios observed over tropical forests. Surprisingly, despite occurrence of anthropogenic emissions, biogenic emissions were found to be the major source of isoprene with peak daytime isoprene driven by temperature (r ≥ 0.8) and solar radiation. Photo-oxidation of precursor hydrocarbons were the main sources of acetaldehyde, formaldehyde and MVK+MACR. Ambient mixing ratios of all the compounds correlated poorly with acetonitrile (r ≤ 0.2), a chemical tracer for biomass burning suggesting negligible influence of biomass burning during monsoon season. Our results suggest that during monsoon season when radiation and rain are no longer limiting factors and convective activity causes surface emissions to be transported to upper atmosphere, biogenic emissions can significantly impact the remote upper atmosphere, climate and ozone affecting rice yields.
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Affiliation(s)
- A K Mishra
- Department of Earth and Environmental Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, S. A. S. Nagar, Manauli PO, Punjab, 140306, India
| | - V Sinha
- Department of Earth and Environmental Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, S. A. S. Nagar, Manauli PO, Punjab, 140306, India.
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15
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Murugan L, Krishnan N, Venkataravanappa V, Saha S, Mishra AK, Sharma BK, Rai AB. Molecular characterization and race identification of Fusarium oxysporum f. sp. lycopersici infecting tomato in India. 3 Biotech 2020; 10:486. [PMID: 33123453 DOI: 10.1007/s13205-020-02475-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2020] [Accepted: 10/12/2020] [Indexed: 11/29/2022] Open
Abstract
Fourteen isolates of Fusarium were isolated from wilt affected tomato samples collected from 10 different states of India. Characterization of the fungal cultures based on morphology and sequencing of ITS rDNA revealed that they belonged to Fusarium oxysporum f.sp. lycopersici (Fol). Pathogenicity assay on two susceptible tomato cultivars showed all the 14 isolates were pathogenic and categorized in high-, moderate- and low-virulent groups. Differential host assay on Bonny Best (no resistant gene), UC82-L (harboring I-1), Fla.MH1 (harboring I-1 and I-2) and I3R-1 (harboring I-1, I-2 and I-3) tomato genotypes and PCR amplification with race-specific primers indicated that all the Fusarium isolates infecting tomato in India were belonging to race 1. Molecular diversity analysis based on ISSR markers revealed the presence of 3 distinct groups of Fol isolates. Abundant diversity was observed among the Fol isolates in harboring the virulence-related genes (endo-polygalacturonase gene pg1 and tomatinases) and toxin production (fumonisin). However, presence of pg1 does not correlate with virulence and the isolates carrying tomatinase 4 (tom-4) in combination with other tomatinase genes were of virulent group. Detection of fumonisin gene in six isolates of Fusarium infecting tomato indicated their toxigenic nature.
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Affiliation(s)
- Loganathan Murugan
- Division of Crop Protection, ICAR-Indian Institute of Vegetable Research, Uttar Pradesh, Varanasi, 221305 India
- Present Address: Division of Crop Protection, ICAR-National Research Centre for Banana, Tamil Nadu, Tiruchirappalli, India
| | - Nagendran Krishnan
- Division of Crop Protection, ICAR-Indian Institute of Vegetable Research, Uttar Pradesh, Varanasi, 221305 India
| | - V Venkataravanappa
- Division of Crop Protection, ICAR-Indian Institute of Vegetable Research, Uttar Pradesh, Varanasi, 221305 India
- Present Address: CHES, Chettalli, ICAR-Indian Institute of Horticultural Research, Hessaraghatta Lake PO, Bangalore, India
| | - S Saha
- Division of Crop Protection, ICAR-Indian Institute of Vegetable Research, Uttar Pradesh, Varanasi, 221305 India
- Present Address: Division of Crop Protection, ICAR-National Research Centre for Grapes, Pune, Maharashtra India
| | - A K Mishra
- Division of Crop Protection, ICAR-Indian Institute of Vegetable Research, Uttar Pradesh, Varanasi, 221305 India
| | - B K Sharma
- Division of Crop Protection, ICAR-Indian Institute of Vegetable Research, Uttar Pradesh, Varanasi, 221305 India
| | - A B Rai
- Division of Crop Protection, ICAR-Indian Institute of Vegetable Research, Uttar Pradesh, Varanasi, 221305 India
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Affiliation(s)
- K K Sahu
- Department of Internal Medicine, Saint Vincent Hospital, MD Medicine, 123 Summer Street, Worcester, MA 01608, USA
| | - A K Mishra
- Department of Internal Medicine, Saint Vincent Hospital, MD Medicine, 123 Summer Street, Worcester, MA 01608, USA
| | - R Patel
- Department of Internal Medicine, Saint Vincent Hospital, MD Medicine, 123 Summer Street, Worcester, MA 01608, USA
| | - N Suramaethakul
- Department of Internal Medicine, Saint Vincent Hospital, MD Medicine, 123 Summer Street, Worcester, MA 01608, USA
| | - G Abraham
- Department of Internal Medicine, Saint Vincent Hospital, MD Medicine, 123 Summer Street, Worcester, MA 01608, USA
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17
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Pandey CB, Kumar U, Kaviraj M, Minick KJ, Mishra AK, Singh JS. DNRA: A short-circuit in biological N-cycling to conserve nitrogen in terrestrial ecosystems. Sci Total Environ 2020; 738:139710. [PMID: 32544704 DOI: 10.1016/j.scitotenv.2020.139710] [Citation(s) in RCA: 90] [Impact Index Per Article: 22.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Revised: 05/21/2020] [Accepted: 05/23/2020] [Indexed: 06/11/2023]
Abstract
This paper reviews dissimilatory nitrate reduction to ammonium (DNRA) in soils - a newly appreciated pathway of nitrogen (N) cycling in the terrestrial ecosystems. The reduction of NO3- occurs in two steps; in the first step, NO3- is reduced to NO2-; and in the second, unlike denitrification, NO2- is reduced to NH4+ without intermediates. There are two sets of NO3-/NO2- reductase enzymes, i.e., Nap/Nrf and Nar/Nir; the former occurs on the periplasmic-membrane and energy conservation is respiratory via electron-transport-chain, whereas the latter is cytoplasmic and energy conservation is both respiratory and fermentative (Nir, substrate-phosphorylation). Since, Nir catalyzes both assimilatory- and dissimilatory-nitrate reduction, the nrfA gene, which transcribes the NrfA protein, is treated as a molecular-marker of DNRA; and a high nrfA/nosZ (N2O-reductase) ratio favours DNRA. Recently, several crystal structures of NrfA have been presumed to producee N2O as a byproduct of DNRA via the NO (nitric-oxide) pathway. Meta-analyses of about 200 publications have revealed that DNRA is regulated by oxidation state of soils and sediments, carbon (C)/N and NO2-/NO3- ratio, and concentrations of ferrous iron (Fe2+) and sulfide (S2-). Under low-redox conditions, a high C/NO3- ratio selects for DNRA while a low ratio selects for denitrification. When the proportion of both C and NO3- are equal, the NO2-/NO3- ratio modulates partitioning of NO3-, and a high NO2-/NO3- ratio favours DNRA. A high S2-/NO3- ratio also promotes DNRA in coastal-ecosystems and saline sediments. Soil pH, temperature, and fine soil particles are other factors known to influence DNRA. Since, DNRA reduces NO3- to NH4+, it is essential for protecting NO3- from leaching and gaseous (N2O) losses and enriches soils with readily available NH4+-N to primary producers and heterotrophic microorganisms. Therefore, DNRA may be treated as a tool to reduce ground-water NO3- pollution, enhance soil health and improve environmental quality.
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Affiliation(s)
- C B Pandey
- ICAR-Central Arid Zone Research Institute, Jodhpur 342003, Rajasthan, India.
| | - Upendra Kumar
- ICAR-National Rice Research Institute, Cuttack 753006, Odisha, India.
| | - Megha Kaviraj
- ICAR-National Rice Research Institute, Cuttack 753006, Odisha, India
| | - K J Minick
- Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, NC 27695, USA
| | - A K Mishra
- International Rice Research Institute, New Delhi 110012, India
| | - J S Singh
- Ecosystem Analysis Lab, Centre of Advanced Study in Botany, Banaras Hindu University (BHU), Varanasi 221005, India
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Affiliation(s)
- A K Mishra
- Internal Medicine, St. Vincent Hospital, 123 Summer Street, Worcester, MA, USA
| | - K K Sahu
- Internal Medicine, St. Vincent Hospital, 123 Summer Street, Worcester, MA, USA
| | - S Nagabandi
- Department of Cardiology, St. Vincent Hospital, 123 Summer Street, Worcester, MA, USA
| | - J Benotti
- Department of Cardiology, St. Vincent Hospital, 123 Summer Street, Worcester, MA, USA
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19
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Remmel JL, Beauchemin KS, Mishra AK, Frei JC, Lai JR, Bailey-Kellogg C, Ackerman ME. Combinatorial Resurfacing of Dengue Envelope Protein Domain III Antigens Selectively Ablates Epitopes Associated with Serotype-Specific or Infection-Enhancing Antibody Responses. ACS Comb Sci 2020; 22:446-456. [PMID: 32574486 DOI: 10.1021/acscombsci.0c00073] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Mutagenesis of surface-exposed residues, or "resurfacing", is a protein engineering strategy that can be utilized to disrupt antibody recognition or modulate the capacity of a protein to elicit antibody responses. We apply resurfacing to engineer Dengue virus envelope protein domain III (DENV DIII) antigens with the goal of focusing humoral recognition on epitopes of interest by selective ablation of irrelevant and undesired epitopes. Cross-reactive but non-neutralizing antibodies have the potential to enhance Dengue virus (DENV) infection by a process called antibody-dependent enhancement, thought to be associated with severe secondary heterotypic infection. Thus, a focus on epitopes associated with broadly neutralizing antibodies is important both for understanding human antibody responses against DENV and for the development of a successful DENV vaccine. To engineer DENV DIII antigens focusing on the AG strand epitope associated with broadly neutralizing antibody responses, we generated yeast surface display libraries of DENV2 DIII where the AB loop (associated with cross-reactive but non-neutralizing antibody responses) and FG loop (associated with serotype-specific antibody responses) were mutagenized to allow for all possible amino acid substitutions. Loop variants that maintained the AG strand epitope and simultaneously disrupted the AB and FG loop epitopes exhibited high and diverse mutational loads that were amenable to loop exchange and transplantation into a DENV4 DIII background. Thus, several loop variants fulfill this antigenicity criteria regardless of serotype context. The resulting resurfaced DIII antigens may be utilized as AG strand epitope-focusing probes or immunogen candidates.
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Affiliation(s)
- Jennifer L. Remmel
- Thayer School of Engineering, Dartmouth College, Hanover, New Hampshire 03755, United States
| | - Kathryn S. Beauchemin
- Geisel School of Medicine, Dartmouth College, Hanover, New Hampshire 03755, United States
| | - Akaash K. Mishra
- Geisel School of Medicine, Dartmouth College, Hanover, New Hampshire 03755, United States
| | - Julia C. Frei
- Department of Biochemistry, Albert Einstein College of Medicine, Bronx, New York 10461, United States
| | - Jonathan R. Lai
- Department of Biochemistry, Albert Einstein College of Medicine, Bronx, New York 10461, United States
| | - Chris Bailey-Kellogg
- Department of Computer Science, Dartmouth College, Hanover, New Hampshire 03755, United States
| | - Margaret E. Ackerman
- Thayer School of Engineering, Dartmouth College, Hanover, New Hampshire 03755, United States
- Geisel School of Medicine, Dartmouth College, Hanover, New Hampshire 03755, United States
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20
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Mishra AK, Rana C, Saha S. Fabrication and comparison of Heterojunction solar cells from CdS/PbS nanoparticles and CdS/PbS bulk. Nano Ex 2020. [DOI: 10.1088/2632-959x/abab16] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Abstract
PbS nanoparticles and CdS nanoparticles are grown by chemical methods. Also bulk PbS is grown by simple chemical methods without using any capping agent. The material formation is identified from XRD.TEM image shows the formation of different shaped PbS nanoparticles, CdS nanoparticles, and bulk PbS. Three different heterojunction solar cells are fabricated by CdS and PbS samples using a spin coating technique. Finally, gold is evaporated on PbS film. Current-voltage characteristics data for three heterojunction solar cells are taken under dark and illumination conditions. For each fabricated solar cell open-circuit voltage (VOC), short circuit current density (ISC), fill factor (FF), and power conversion efficiency(
ῃ
) are measured. Finally, a comparison of the characteristics is done for different fabricated heterojunction solar cells.
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21
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Affiliation(s)
- K K Sahu
- Department of Internal Medicine, Saint Vincent Hospital, 123 Summer Street, Worcester, MA 01608, USA
| | - A K Mishra
- Department of Internal Medicine, Saint Vincent Hospital, 123 Summer Street, Worcester, MA 01608, USA
| | - A Lal
- Division of Pulmonary and Critical Care Medicine, Mayo Clinic, 200 1st St SW, Rochester, Minnesota, 55902, USA
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Affiliation(s)
- A K Mishra
- Department of Internal Medicine, Saint Vincent Hospital, Worcester, MA 01608, USA
| | - K K Sahu
- Department of Internal Medicine, Saint Vincent Hospital, Worcester, MA 01608, USA
| | - V Baddam
- Department of Internal Medicine, Saint Vincent Hospital, University of Massachusetts Medical School, Worcester, MA 01608, USA
| | - J Sargent
- Department of Internal Medicine, Saint Vincent Hospital, University of Massachusetts Medical School, Worcester, MA 01608, USA
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Affiliation(s)
- K K Sahu
- Department of Medicine, Saint Vincent Hospital, 123 Summer Street, Worcester, MA 01608, USA
| | - A Lal
- Department of Medicine, Saint Vincent Hospital, 123 Summer Street, Worcester, MA 01608, USA
| | - A K Mishra
- Department of Medicine, Saint Vincent Hospital, 123 Summer Street, Worcester, MA 01608, USA
| | - P Zhang
- Department of Medicine, Saint Vincent Hospital, 123 Summer Street, Worcester, MA 01608, USA
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24
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Affiliation(s)
- K K Sahu
- Department of Internal Medicine, Saint Vincent Hospital, 123 Summer Street, Worcester, MA 01608, USA
| | - A K Mishra
- Department of Internal Medicine, Saint Vincent Hospital, 123 Summer Street, Worcester, MA 01608, USA
| | - C A Lopez
- Division of Pulmonology and Critical Care Medicine, Reliant Medical Group, 123 Summer Street, Worcester, MA 01608, USA
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25
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Affiliation(s)
- A K Mishra
- Department of Internal Medicine, Saint Vincent Hospital, Worcester, MA 01608, USA
| | - K K Sahu
- Department of Internal Medicine, Saint Vincent Hospital, Worcester, MA 01608, USA
| | - A Lal
- Department of Internal Medicine, Saint Vincent Hospital, Worcester, MA 01608, USA
| | - V Menon
- Department of Internal Medicine, Saint Vincent Hospital, Worcester, MA 01608, USA
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26
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Affiliation(s)
- A K Mishra
- From the Department of Internal Medicine, Saint Vincent Hospital, Worcester, MA 01608, USA
| | - K K Sahu
- From the Department of Internal Medicine, Saint Vincent Hospital, Worcester, MA 01608, USA
| | - A Lal
- Department of Critical Care, Mayo Clinic, Rochester, MN, USA
| | - M Sujata
- Department of Critical Care, Lahey Clinic, Burlington, MA, USA
- Saint Vincent Hospital, Worcester, MA 01608, USA
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Sahu KK, Mishra AK, Lal A, Kranis M. An interesting case of expressive aphasia: Enterococcus faecalis-related infective endocarditis complicating as septic emboli. QJM 2020; 113:146-147. [PMID: 31268537 DOI: 10.1093/qjmed/hcz169] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- K K Sahu
- Department of Internal Medicine, Saint Vincent Hospital, 123 Summer Street, Worcester, MA 01608, USA
| | - A K Mishra
- Department of Internal Medicine, Saint Vincent Hospital, 123 Summer Street, Worcester, MA 01608, USA
| | - A Lal
- Department of Internal Medicine, Saint Vincent Hospital, 123 Summer Street, Worcester, MA 01608, USA
| | - M Kranis
- Department of Cardiovascular diseases, Saint Vincent Hospital, 123 Summer Street, Worcester, MA 01608, USA
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28
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Affiliation(s)
- A K Mishra
- From the Department of Internal Medicine, Saint Vincent Hospital, Worcester, MA 01608, USA
| | - K K Sahu
- From the Department of Internal Medicine, Saint Vincent Hospital, Worcester, MA 01608, USA
| | - A Lal
- Department of Pulmonary and Critical Care Medicine, Mayo Clinic, Rochester, MN 55902, USA
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29
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Moja TN, Bunekar N, Mishra SB, Tsai TY, Hwang SS, Mishra AK. Melt processing of polypropylene-grafted-maleic anhydride/Chitosan polymer blend functionalized with montmorillonite for the removal of lead ions from aqueous solutions. Sci Rep 2020; 10:217. [PMID: 31937796 PMCID: PMC6959273 DOI: 10.1038/s41598-019-57079-2] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2019] [Accepted: 12/16/2019] [Indexed: 11/12/2022] Open
Abstract
Heavy metals such as lead ions Pb (II) are a primary concern in the aquatic environment. These is because Pb (II) is poisonous at a threshold limit above 0.01 mg/L, when consumed over a long period of time. Pb (II) poisoning is very harmful to various organs viz. heart, intestine and kidneys. Besides, it affects bones, tissues, nervous and reproductive systems. Hence, it is important to remove Pb (II) from aquatic environment. Polypropylene (PP) and polypropylene grafted-maleic-anhydride (PP-g-MA) based nanocomposites reinforced with Chitosan (CS) and modified montmorillonite clay nanofiller (CL120DT) were successfully fabricated using twin screw melt extrusion for adsorption of Pb (II). The resulting nanocomposites were characterized by XRD to analyze the dispersion properties of the material, TEM and SEM for surface morphology, FTIR analysis for the functional groups and TGA for thermal stability. Pure PP showed two sharp peaks, but there was decreased in the intensity upon adding of CS and CL120DT. Among series of nanocomposites 2.0 phr and 4.0 phr loaded samples shows better storage module than that of pure PP. The uptake of Pb (II) from lead nitrate aqueous solution by PP + PP-g-MA/CL120DT-CS 2.0 phr nanocomposites followed the Langmuir isotherm model, with a remediation of 90.9% at pH 8 and was verified by pseudo-second order kinetic model. These results indicate that PP + PP-g-MA//CL120DT-CS 2.0 phr nanocomposites performed as a superabsorbent for the Pb (II) ion removal from aqueous solution.
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Affiliation(s)
- T N Moja
- Nanotechnology and Water Sustainability Research Unit, College of Science, Engineering and Technology, University of South Africa, Florida Campus, Johannesburg, South Africa
| | - N Bunekar
- Department of Chemistry, Master Program in Nanotechnology & Center for Nanotechnology, Chung Yuan Christian University, Chung-Li, 32023, Taiwan, ROC
| | - S B Mishra
- Nanotechnology and Water Sustainability Research Unit, College of Science, Engineering and Technology, University of South Africa, Florida Campus, Johannesburg, South Africa.
| | - T-Y Tsai
- Department of Chemistry, Master Program in Nanotechnology & Center for Nanotechnology, Chung Yuan Christian University, Chung-Li, 32023, Taiwan, ROC.
| | - S S Hwang
- Department of Mechanical Engineering, Chien-Hsin University of Science and Technology, Chung-Li, 32097, Taiwan, ROC
| | - A K Mishra
- Nanotechnology and Water Sustainability Research Unit, College of Science, Engineering and Technology, University of South Africa, Florida Campus, Johannesburg, South Africa.
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30
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Mishra AK, Santos R, Hall-Spencer JM. Elevated trace elements in sediments and seagrasses at CO 2 seeps. Mar Environ Res 2020; 153:104810. [PMID: 31733909 DOI: 10.1016/j.marenvres.2019.104810] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2019] [Revised: 09/29/2019] [Accepted: 10/04/2019] [Indexed: 06/10/2023]
Abstract
Seagrasses often occur around shallow marine CO2 seeps, allowing assessment of trace metal accumulation. Here, we measured Cd, Cu, Hg, Ni, Pb and Zn levels at six CO2 seeps and six reference sites in the Mediterranean. Some seep sediments had elevated metal concentrations; an extreme example was Cd which was 43x more concentrated at a seep site than its corresponding reference site. Three seeps had metal levels that were predicted to adversely affect marine biota, namely Vulcano (for Hg), Ischia (for Cu) and Paleochori (for Cd and Ni). There were higher-than-sediment levels of Zn and Ni in Posidonia oceanica and of Zn in Cymodocea nodosa, particularly in roots. High levels of Cu were found in Ischia seep sediments, yet seagrass was abundant there, and the plants contained low levels of Cu. Differences in bioavailability and toxicity of trace elements helps explain why seagrasses can be abundant at some CO2 seeps but not at others.
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Affiliation(s)
- A K Mishra
- Centre for Marine Sciences, University of Algarve, Campus de Gambelas, Faro, 8005-139, Portugal; School of Biological and Marine Sciences, University of Plymouth, Plymouth, PL48A, UK.
| | - R Santos
- Centre for Marine Sciences, University of Algarve, Campus de Gambelas, Faro, 8005-139, Portugal
| | - J M Hall-Spencer
- School of Biological and Marine Sciences, University of Plymouth, Plymouth, PL48A, UK; Shimoda Marine Research Centre, University of Tsukuba, Shizuoka, 415-0025, Japan
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31
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Hakkim H, Sinha V, Chandra BP, Kumar A, Mishra AK, Sinha B, Sharma G, Pawar H, Sohpaul B, Ghude SD, Pithani P, Kulkarni R, Jenamani RK, Rajeevan M. Volatile organic compound measurements point to fog-induced biomass burning feedback to air quality in the megacity of Delhi. Sci Total Environ 2019; 689:295-304. [PMID: 31276997 DOI: 10.1016/j.scitotenv.2019.06.438] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2019] [Revised: 06/25/2019] [Accepted: 06/26/2019] [Indexed: 06/09/2023]
Abstract
We report the first ambient measurements of thirteen VOCs for investigations of emissions and air quality during fog and non-fog wintertime conditions at a tower site (28.57° N, 77.11° E, 220 m amsl) in the megacity of Delhi. Measurements of acetonitrile (biomass burning (BB) tracer), isoprene (biogenic emission tracer in daytime), toluene (a traffic exhaust tracer) and benzene (emitted from BB and traffic), together with soluble and reactive oxygenated VOCs such as methanol, acetone and acetaldehyde were performed during the winters of 2015-16 and 2016-17, using proton transfer reaction mass spectrometry. Remarkably, ambient VOC composition changes during fog were not governed by solubility. Acetaldehyde, toluene, sum of C8-aromatics (e.g. xylenes), sum of C9-aromatics (e.g. trimethyl benzenes) decreased by ≥30% (>95% confidence interval), whereas acetonitrile and benzene showed significant increases by 20% (>70% confidence interval), even after accounting for boundary layer dilution. During fog, the lower temperatures appeared to induce an emissions feedback from enhanced open BB within Delhi for warming, releasing both gaseous and aerosol pollutants with consequences for fog chemistry, sustenance and intensity. The potential feedback is important to consider for improving current emission parametrizations in models used for predicting air quality and fog in such atmospheric environments.
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Affiliation(s)
- H Hakkim
- Department of Earth and Environmental Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, S.A.S. Nagar, Manauli PO, Punjab, 140306, India
| | - V Sinha
- Department of Earth and Environmental Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, S.A.S. Nagar, Manauli PO, Punjab, 140306, India.
| | - B P Chandra
- Department of Earth and Environmental Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, S.A.S. Nagar, Manauli PO, Punjab, 140306, India
| | - A Kumar
- Department of Earth and Environmental Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, S.A.S. Nagar, Manauli PO, Punjab, 140306, India
| | - A K Mishra
- Department of Earth and Environmental Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, S.A.S. Nagar, Manauli PO, Punjab, 140306, India
| | - B Sinha
- Department of Earth and Environmental Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, S.A.S. Nagar, Manauli PO, Punjab, 140306, India
| | - G Sharma
- Department of Earth and Environmental Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, S.A.S. Nagar, Manauli PO, Punjab, 140306, India
| | - H Pawar
- Department of Earth and Environmental Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, S.A.S. Nagar, Manauli PO, Punjab, 140306, India
| | - B Sohpaul
- Department of Earth and Environmental Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, S.A.S. Nagar, Manauli PO, Punjab, 140306, India
| | - Sachin D Ghude
- Indian Institute of Tropical Meteorology, Pashan, Pune 411008, India
| | - P Pithani
- Indian Institute of Tropical Meteorology, Pashan, Pune 411008, India
| | - R Kulkarni
- Indian Institute of Tropical Meteorology, Pashan, Pune 411008, India; Savitribai Phule Pune University, Pune, India
| | - R K Jenamani
- Indian Meteorological Department, New Delhi 110003, India
| | - M Rajeevan
- Ministry of Earth Sciences, Government of India, New Delhi 110003, India
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32
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Sahu KK, Doshi A, Mishra AK, Kranis M. A female with five chambers. Neth Heart J 2019; 28:171. [PMID: 31654326 PMCID: PMC7052091 DOI: 10.1007/s12471-019-01338-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
Affiliation(s)
- K K Sahu
- Department of Internal Medicine, Saint Vincent Hospital, 123 Summer Street, 01608, Worcester, MA, United States.
| | - A Doshi
- Department of Cardiovascular diseases, Saint Vincent Hospital, 123 Summer Street, 01608, Worcester, MA, United States
| | - A K Mishra
- Department of Internal Medicine, Saint Vincent Hospital, 123 Summer Street, 01608, Worcester, MA, United States
| | - M Kranis
- Department of Cardiovascular diseases, Saint Vincent Hospital, 123 Summer Street, 01608, Worcester, MA, United States
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33
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Sahu KK, Doshi A, Mishra AK, Kranis M. A female with five chambers. Neth Heart J 2019; 28:174-175. [PMID: 31654327 PMCID: PMC7052089 DOI: 10.1007/s12471-019-01339-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Affiliation(s)
- K K Sahu
- Department of Internal Medicine, Saint Vincent Hospital, 123 Summer Street, 01608, Worcester, MA, United States.
| | - A Doshi
- Department of Cardiovascular diseases, Saint Vincent Hospital, 123 Summer Street, 01608, Worcester, MA, United States
| | - A K Mishra
- Department of Internal Medicine, Saint Vincent Hospital, 123 Summer Street, 01608, Worcester, MA, United States
| | - M Kranis
- Department of Cardiovascular diseases, Saint Vincent Hospital, 123 Summer Street, 01608, Worcester, MA, United States
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34
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Affiliation(s)
- A K Mishra
- Department of Internal Medicine, Saint Vincent Hospital, Worcester, MA, USA
| | - K K Sahu
- Department of Internal Medicine, Saint Vincent Hospital, Worcester, MA, USA
| | - A Lal
- Department of Internal Medicine, Saint Vincent Hospital, Worcester, MA, USA
| | - Z Peng
- Consultant in Department of Internal Medicine, Saint Vincent Hospital, Worcester, MA, USA
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35
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Affiliation(s)
- K K Sahu
- Department of Internal Medicine, Saint Vincent Hospital, Worcester, MA, USA
| | - A A Sherif
- Department of Internal Medicine, Saint Vincent Hospital, Worcester, MA, USA
| | - M P Syed
- Department of Internal Medicine, Saint Vincent Hospital, Worcester, MA, USA
| | - A Rajendran
- Department of Cardiovascular Diseases, Mayo Clinic, Rochester, MN USA
| | - A K Mishra
- Department of Internal Medicine, Saint Vincent Hospital, Worcester, MA, USA
| | - R Davaro
- Department of Infectious diseases, Saint Vincent Hospital, Worcester, MA, USA
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36
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Velavan A, Purty AJ, Shringarpure K, Sagili KD, Mishra AK, Selvaraj KS, Manikandan M, Saravanan V. Tuberculosis retreatment outcomes and associated factors: a mixed-methods study from Puducherry, India. Public Health Action 2018; 8:187-193. [PMID: 30775279 DOI: 10.5588/pha.18.0038] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2018] [Accepted: 10/11/2018] [Indexed: 12/24/2022] Open
Abstract
Setting: Four Tuberculosis (TB) Units in the Union Territory of Puducherry in India. Objectives: To identify factors associated with unfavourable outcomes among retreatment TB cases in Puducherry. Design: The study had a mixed-methods design in which routinely reported TB data from retreatment TB cases registered during 2014 and 2015 were used for the quantitative part; the qualitative phase comprised interviews and focus group discussions with health care providers. Results: Among the 392 retreatment cases, 297 (75.8%) had favourable outcomes. Outcome for previous treatment such as loss to follow-up (LTFU) (adjusted relative risk [aRR] 1.6, 95%CI 1.1-2.4, P = 0.001), treatment failure (aRR 1.7, 95%CI 1.04-2.8, P = 0.03) and pre-treatment weight <40 kg (aRR 1.8, 95%CI 1.3-2.5, P = 0.001) had increased risk for unfavourable outcomes. Health care providers reported that alcoholism, lack of family support, job-related issues and lack of access to trained staff for injections were some of the reasons for unfavourable outcomes. Providing incentives, nutritional supplements and early retrieval of the LTFU cases were some of the suggestions to reduce unfavourable outcomes. Conclusion: Outcome of previous treatment and low pre-treatment weight of the patient affected retreatment outcomes. Health professionals and workers highlighted social and health system-related factors. Commitment at all levels on the part of health care providers and addressing their concerns can improve retreatment outcomes.
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Affiliation(s)
- A Velavan
- Department of Community Medicine, Pondicherry Institute of Medical Science (PIMS), Puducherry, India
| | - A J Purty
- Department of Community Medicine, Pondicherry Institute of Medical Science (PIMS), Puducherry, India.,National Task Force, Revised National Tuberculosis Control Programme, New Delhi, India
| | - K Shringarpure
- Department of Preventive and Social Medicine, Medical College of Baroda, Vadodara, Gujarat, India
| | - K D Sagili
- International Union Against Tuberculosis and Lung Disease, South-East Asia Office, New Delhi, India
| | - A K Mishra
- Department of Community Medicine, Pondicherry Institute of Medical Science (PIMS), Puducherry, India
| | - K S Selvaraj
- Department of Community Medicine, Pondicherry Institute of Medical Science (PIMS), Puducherry, India
| | - M Manikandan
- Department of Community Medicine, Pondicherry Institute of Medical Science (PIMS), Puducherry, India
| | - V Saravanan
- Department of Community Medicine, Pondicherry Institute of Medical Science (PIMS), Puducherry, India
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37
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Ahlawat S, Sharma R, Arora R, Kumari N, Mishra AK, Tantia MS. Promoter methylation and expression analysis of Bvh gene in bulls with varying semen motility parameters. Theriogenology 2018; 125:152-156. [PMID: 30447494 DOI: 10.1016/j.theriogenology.2018.11.001] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2018] [Revised: 10/09/2018] [Accepted: 11/04/2018] [Indexed: 12/18/2022]
Abstract
Crossbreds of low-producing indigenous cattle and high-producing exotic dairy bulls (Holstein Friesian and Jersey) have contributed in ensuring that India continues to be the world's top milk-producing country. However, subfertility observed in crossbred male progenies has been a major obstacle in exploitation of heterosis due to crossbreeding. There is sufficient scientific evidence in support of genetic and epigenetic regulation of key physiological processes including spermatogenesis. Bovine Vasa Homology (Bvh) is considered a molecular marker for the study of gametogenesis. Significant negative correlation between DNA methylation and gene expression has been reported in cattle-yaks hybrids and their parents. The present study analyzed promoter methylation status and expression profile of Bvh gene in spermatozoa from exotic Holstein Friesian cattle, indigenous Sahiwal cattle and their crossbreds with varying semen motility parameters. The degree of methylation of the Bvh promoter region was significantly higher in poor motility crossbred bulls (13.3%) as compared to good motility crossbreds (5.3%), Sahiwal (3%) and Holstein Friesian bulls (1%) (P < 0.05). Gene expression analysis revealed significantly higher mRNA abundance of Bvh in purebreds (Holstein Friesian and Sahiwal) as compared to crossbred counterparts (P < 0.001). Inverse correlation observed in this study between promoter methylation and gene expression of Bvh gene in spermatozoa from crossbred bulls with poor motility phenotype as compared to purebred parents provides an important insight into understanding the graded fertility of crossbred bulls.
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Affiliation(s)
- Sonika Ahlawat
- ICAR-National Bureau of Animal Genetic Resources, Karnal, India.
| | - Rekha Sharma
- ICAR-National Bureau of Animal Genetic Resources, Karnal, India
| | - Reena Arora
- ICAR-National Bureau of Animal Genetic Resources, Karnal, India
| | - Namita Kumari
- ICAR-National Bureau of Animal Genetic Resources, Karnal, India
| | - A K Mishra
- ICAR-National Bureau of Animal Genetic Resources, Karnal, India
| | - M S Tantia
- ICAR-National Bureau of Animal Genetic Resources, Karnal, India
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38
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Abhishek, Kumar B, Anjay, Mishra AK, Prakash C, Priyadarshini A, Rawat M. Immunization with Salmonella Abortusequi phage lysate protects guinea pig against the virulent challenge of SAE-742. Biologicals 2018; 56:24-28. [PMID: 30181080 DOI: 10.1016/j.biologicals.2018.08.006] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2017] [Revised: 08/14/2018] [Accepted: 08/20/2018] [Indexed: 11/25/2022] Open
Abstract
Salmonella Abortusequi causes important clinical diseases in horses possibly leading to abortion. In the present investigation, the protective efficacy of both plain and aluminum hydroxide gel adjuvanted phage lysate was evaluated in guinea pig model. Broad host range bacteriophage PIZ-SAE-2, was characterized and used for generation of lysates. Three different lysate batches, produced through separate cycles and characterized, were pooled together for immunization study. Plain and adjuvanted phage lysate preparations elicited both humoral and cellmediated immunity. The adjuvanted lysate at a dose of 50 μl elicited the highest protective efficacy against direct challenge at 28th DPI. Thus, the present study describes a new method of bacterial inactivation for producing a new class of better & safe immunprophylactic agents. This is the first report of producing an inactivated vaccine candidate using a new approach against equine salmonellosis.
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Affiliation(s)
- Abhishek
- Bacteriology and Mycology Division, Indian Veterinary Research Institute, Izatnagar, Bareilly, 243122, India.
| | - B Kumar
- Biological Product Division, Indian Veterinary Research Institute, Izatnagar, Bareilly, 243122, India
| | - Anjay
- Veterinary Public Health, Bihar Veterinary College, Patna, 800014, India
| | - A K Mishra
- Central Institute of Research on Goat, Makhdoom, Farah, Mathura, 281122, India
| | - C Prakash
- Animal Health Division, Central Sheep and Wool Research Institute, Avikanagar, 304501, India
| | - A Priyadarshini
- Bacteriology and Mycology Division, Indian Veterinary Research Institute, Izatnagar, Bareilly, 243122, India
| | - M Rawat
- Biological Standardization Division, Indian Veterinary Research Institute, Izatnagar, Bareilly, 243122, India
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39
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Arun A, Ansari MI, Popli P, Jaiswal S, Mishra AK, Dwivedi A, Hajela K, Konwar R. New piperidine derivative DTPEP acts as dual-acting anti-breast cancer agent by targeting ERα and downregulating PI3K/Akt-PKCα leading to caspase-dependent apoptosis. Cell Prolif 2018; 51:e12501. [PMID: 30091186 DOI: 10.1111/cpr.12501] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2018] [Accepted: 06/02/2018] [Indexed: 12/17/2022] Open
Abstract
OBJECTIVES In our ongoing studies to develop ER targeting agents, we screened for dual-acting molecules with a hypothesis that a single molecule can also target both ER positive and negative groups of breast cancer. MATERIALS AND METHODS 1-(2-(4-(Dibenzo[b,f]thiepin-10-yl)phenoxy)ethyl)piperidine (DTPEP) was synthesized and screened in both MCF-7 (ER+ve) and MDA-MB-231 (ER-ve) cells. Assays for analysis of cell cycle, ROS, apoptosis and MMP loss were carried out using flow cytometry. Its target was investigated using western blot, transactivation assay and RT-PCR. In vivo efficacy of DTPEP was validated in LA-7 syngeneic rat mammary tumour model. RESULTS Here, we report identification of dual-acting molecule DTPEP that downregualtes PI3K/Akt and PKCα expression, induces ROS and ROS-dependent apoptosis, loss of mitochondrial membrane potential, induces expression of caspase indicative of both intrinsic and extrinsic apoptosis in MCF-7 and MDA-MB-231 cells. In MCF-7 cells, DTPEP downregulates ERα expression and activation. In MDA-MB-231 cells, primary cellular target of DTPEP is not clearly known, but it downregualtes PI3K/Akt and PKCα expression. In vivo study showed regression of LA-7 syngeneic mammary tumour in SD rat. CONCLUSIONS We identified a new dual-acting anti-breast cancer molecules as a proof of concept which is capable of targeting both ER-positive and ER-negative breast cancer.
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Affiliation(s)
- A Arun
- Endocrinology Division, CSIR-Central Drug Research Institute, Lucknow, UP, India
| | - M I Ansari
- Medicinal and Process Chemistry Division, CSIR-Central Drug Research Institute, Lucknow, UP, India
| | - P Popli
- Endocrinology Division, CSIR-Central Drug Research Institute, Lucknow, UP, India
| | - S Jaiswal
- Medicinal and Process Chemistry Division, CSIR-Central Drug Research Institute, Lucknow, UP, India
| | - A K Mishra
- Department of Endocrine Surgery, King George's Medical University, Lucknow, UP, India
| | - A Dwivedi
- Endocrinology Division, CSIR-Central Drug Research Institute, Lucknow, UP, India.,Academy of Scientific and Innovative Research (AcSIR), CSIR-Central Drug Research Institute Campus, Lucknow, UP, India
| | - K Hajela
- Medicinal and Process Chemistry Division, CSIR-Central Drug Research Institute, Lucknow, UP, India
| | - R Konwar
- Endocrinology Division, CSIR-Central Drug Research Institute, Lucknow, UP, India.,Academy of Scientific and Innovative Research (AcSIR), CSIR-Central Drug Research Institute Campus, Lucknow, UP, India
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40
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Mishra AK. Osteosynthesis with Locking Plate for Proximal Humerus Fracture. Kathmandu Univ Med J (KUMJ) 2018; 16:244-247. [PMID: 31719314] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Background Approximately 5% of all fractures consists of proximal humeral fractures. In the elderly population, most of these fractures are related to osteoporosis. Internal fixation has led to unpredictable results, especially in patients with osteopenic bone and those with comminuted fractures. Objective To evaluate functional outcome and complications following proximal humerus fracture fixation using locking plate. Method This prospective observational study was conducted at Nepal Medical College and Teaching Hospital from February 2014 to June 2015. We reviewed 35 patients with proximal humerus fractures, who underwent open reduction and internal fixation with locking plate.Functional outcome was evaluated according to the ConstantMurley shoulder assessment. Result Fracture union was achieved in all cases with the mean time to union being 14.6 weeks (11-24 weeks). At the final follow up the mean constant murley score was 73.6 (48-94). There was total 8(22.85%) cases who developed complication. Conclusion Internal fixation with the locking plate for proximal humerus fractures provides stable construct with better functional outcome as it allows early shoulder mobilization.
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Affiliation(s)
- A K Mishra
- Department of Orthopaedic, Nepal Medical College, Jorpati, Kathmandu, Nepal
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Mishra AK, van Ruitenbeek AM, Loomans MGLC, Kort HSM. Window/door opening-mediated bedroom ventilation and its impact on sleep quality of healthy, young adults. Indoor Air 2018; 28:339-351. [PMID: 29164702 DOI: 10.1111/ina.12435] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2017] [Accepted: 10/07/2017] [Indexed: 06/07/2023]
Abstract
This work examined window/door opening as means of bedroom ventilation and the consequent effect upon occupants' sleep, using data from 17 healthy volunteers. Bedroom CO2 level, temperature, and relative humidity were measured over 5 days, for two cases: open window or door (internal, bedroom door), and closed window and door. Participant filled questionnaires and sleep diary provided subjective measure of sleep quality. Actigraphy objectively monitored the participants during sleep. Additionally, a FlexSensor, placed under pillows of participants, detected movement during sleep. Average CO2 level for the Open conditions was 717 ppm (SD = 197 ppm) and for Closed conditions was 1150 ppm (SD = 463 ppm). Absolute humidity levels were similar for both conditions, while Open conditions were slightly cooler (mean = 19.7°C, SD = 1.8°C) than Closed (mean = 20.1°C, SD = 1.5°C). Results showed significant correlations (P < .001) between actigraphy data and questionnaire responses for: sleep latency (r = .45), sleep length (r = .87), and number of awakenings (r = .28). Of all analyzed sleep parameters, questionnaire-based depth of sleep (P = .002) and actigraphy-based sleep phase (P = .003) were significantly different between Open and Closed conditions.
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Affiliation(s)
- A K Mishra
- Department of the Built Environment, Unit Building Physics and Services, Eindhoven University of Technology, Eindhoven, The Netherlands
| | - A M van Ruitenbeek
- Department of the Built Environment, Unit Building Physics and Services, Eindhoven University of Technology, Eindhoven, The Netherlands
| | - M G L C Loomans
- Department of the Built Environment, Unit Building Physics and Services, Eindhoven University of Technology, Eindhoven, The Netherlands
| | - H S M Kort
- Department of the Built Environment, Unit Building Physics and Services, Eindhoven University of Technology, Eindhoven, The Netherlands
- Research Centre for Innovations in Health Care, Utrecht University of Applied Sciences, Utrecht, The Netherlands
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Vanjare HA, Mannam P, Mishra AK, Karuppusami R, Carey RAB, Abraham AM, Rose W, Iyyadurai R, Mani S. Brain Imaging in Cases with Positive Serology for Dengue with Neurologic Symptoms: A Clinicoradiologic Correlation. AJNR Am J Neuroradiol 2018; 39:699-703. [PMID: 29439121 DOI: 10.3174/ajnr.a5544] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2017] [Accepted: 11/29/2017] [Indexed: 12/11/2022]
Abstract
BACKGROUND AND PURPOSE Dengue is a common arboviral disease, which uncommonly involves the brain. There has been a recent surge in dengue cases and dengue-related deaths in tropical countries. The aim of this study was to describe brain imaging findings in patients with dengue infection having neurologic symptoms. MATERIALS AND METHODS Thirty-five patients with positive serology for dengue with CNS symptoms undergoing imaging of the brain were included in the study. Clinical, laboratory, and imaging parameters were assessed and correlated to poor outcome. RESULTS A Glasgow Coma Scale score of ≤12 at presentation, clinical classification of severe-type dengue, and the presence of acute renal failure were associated with poor outcome. Imaging parameters associated with poor outcome were involvement of the thalami and cerebellar peduncles and the presence of diffusion restriction and hemorrhagic foci in the brain parenchyma. CONCLUSIONS Although not specific, dengue infection has imaging findings that can be used to narrow down the differential list and help in prognostication.
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Affiliation(s)
- H A Vanjare
- From the Departments of Radiology (H.A.V., P.M., S.M.)
| | - P Mannam
- From the Departments of Radiology (H.A.V., P.M., S.M.)
| | | | | | | | | | - W Rose
- Pediatrics (W.R.), Christian Medical College and Hospital, Tamil Nadu, India
| | | | - S Mani
- From the Departments of Radiology (H.A.V., P.M., S.M.)
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Mishra AK, Sharma N, Singh DD, Gururaj K, Abhishek, Kumar V, Sharma DK. Prevalence and bacterial etiology of subclinical mastitis in goats reared in organized farms. Vet World 2018; 11:20-24. [PMID: 29479152 PMCID: PMC5813506 DOI: 10.14202/vetworld.2018.20-24] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2017] [Accepted: 11/16/2017] [Indexed: 11/16/2022] Open
Abstract
Aim: Assessment of the status of subclinical mastitis (SCM) in Jamunapari and Barbari goats in Indian organized farms, the involvement of bacterial pathogens and their sensitivity to antibiotics. Materials and Methods: A total of 181 composite milk samples were aseptically collected from the apparently healthy Barbari (n=95) and Jamunapari (n=86) goats. The California mastitis test (CMT) and somatic cell count (SCC) were used to diagnose SCM. The milk samples with CMT scores of 0 and +1 were considered as negative, while the samples with the score of +2 or +3 were taken as positive, and further, the positive samples were used for the bacteriological examination. An antibiotic sensitivity test was performed by disk diffusion method using seven commercially available antibiotic discs. Results: All the samples having CMT score of +2 or +3 demonstrated SCC more than 1 million. Overall, the prevalence of SCM in the goats was assessed as 19.89% (36/181). The prevalence of SCM in Barbari and Jamunapari goats was found as 24.21% (23/95) and 15.12% (13/86), respectively. Out of 11 isolates of Staphylococci, 9 isolates were identified as coagulase-negative Staphylococci (CNS), whereas 2 isolates were found as Staphylococcus aureus. The identified bacterial isolates (n=30) did not show antibiotic resistance. Conclusion: The current investigation showed the considerable prevalence of SCM among Jamunapari and Barbari goats which may have a negative impact on quantity and quality of the milk. CNS was found as the most prevalent cause of SCM in the goats. Negligible antibiotic resistance was found among the identified udder pathogens.
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Affiliation(s)
- A K Mishra
- Division of Animal Health, ICAR-Central Institute for Research on Goats, Makhdoom, Farah, Mathura - 281 122, Uttar Pradesh, India
| | - Nitika Sharma
- Division of Animal Health, ICAR-Central Institute for Research on Goats, Makhdoom, Farah, Mathura - 281 122, Uttar Pradesh, India
| | - D D Singh
- Department of Veterinary Pathology, College of Veterinary Sciences, N.D.U.A.&T., Faizabad - 224 229, Uttar Pradesh, India
| | - K Gururaj
- Division of Animal Health, ICAR-Central Institute for Research on Goats, Makhdoom, Farah, Mathura - 281 122, Uttar Pradesh, India
| | - Abhishek
- Division of Bacteriology, ICAR-Indian Veterinary Research Institute, Izatnagar - 243 122, Uttar Pradesh, India
| | - Vijay Kumar
- Division of Animal Health, ICAR-Central Institute for Research on Goats, Makhdoom, Farah, Mathura - 281 122, Uttar Pradesh, India
| | - D K Sharma
- Division of Animal Health, ICAR-Central Institute for Research on Goats, Makhdoom, Farah, Mathura - 281 122, Uttar Pradesh, India
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Gavande NS, VanderVere-Carozza P, Mishra AK, Vernon TL, Pawelczak KS, Turchi JJ. Design and Structure-Guided Development of Novel Inhibitors of the Xeroderma Pigmentosum Group A (XPA) Protein-DNA Interaction. J Med Chem 2017; 60:8055-8070. [PMID: 28933851 DOI: 10.1021/acs.jmedchem.7b00780] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
XPA is a unique and essential protein required for the nucleotide excision DNA repair pathway and represents a therapeutic target in oncology. Herein, we are the first to develop novel inhibitors of the XPA-DNA interaction through structure-guided drug design efforts. Ester derivatives of the compounds 1 (X80), 22, and 24 displayed excellent inhibitory activity (IC50 of 0.82 ± 0.18 μM and 1.3 ± 0.22 μM, respectively) but poor solubility. We have synthesized novel amide derivatives that retain potency and have much improved solubility. Furthermore, compound 1 analogs exhibited good specificity for XPA over RPA (replication protein A), another DNA-binding protein that participates in the nucleotide excision repair (NER) pathway. Importantly, there were no significant interactions observed by the X80 class of compounds directly with DNA. Molecular docking studies revealed a mechanistic model for the interaction, and these studies could serve as the basis for continued analysis of structure-activity relationships and drug development efforts of this novel target.
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Affiliation(s)
- Navnath S Gavande
- Department of Medicine, Indiana University School of Medicine , Indianapolis, Indiana 46202, United States
| | - Pamela VanderVere-Carozza
- Department of Medicine, Indiana University School of Medicine , Indianapolis, Indiana 46202, United States
| | - Akaash K Mishra
- Department of Medicine, Indiana University School of Medicine , Indianapolis, Indiana 46202, United States.,Department of Biochemistry and Molecular Biology, Indiana University School of Medicine , Indianapolis, Indiana 46202, United States
| | - Tyler L Vernon
- Department of Medicine, Indiana University School of Medicine , Indianapolis, Indiana 46202, United States
| | - Katherine S Pawelczak
- NERx Biosciences , 212 W 10th Street, Suite A480, Indianapolis, Indiana 46202, United States
| | - John J Turchi
- Department of Medicine, Indiana University School of Medicine , Indianapolis, Indiana 46202, United States.,Department of Biochemistry and Molecular Biology, Indiana University School of Medicine , Indianapolis, Indiana 46202, United States.,NERx Biosciences , 212 W 10th Street, Suite A480, Indianapolis, Indiana 46202, United States
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Beena V, Pawaiya RVS, Gururaj K, Singh DD, Mishra AK, Gangwar NK, Gupta VK, Singh R, Sharma AK, Karikalan M, Kumar A. Molecular etiopathology of naturally occurring reproductive diseases in female goats. Vet World 2017; 10:964-972. [PMID: 28919691 PMCID: PMC5591487 DOI: 10.14202/vetworld.2017.964-972] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2017] [Accepted: 07/26/2017] [Indexed: 11/16/2022] Open
Abstract
AIM The aim of the present study was to investigate the molecular etiopathology of occurrence of reproductive diseases in female goats. Reproductive diseases in goats account for major economic losses to goat farmers in terms of valuable loss of offspring and animal productivity. MATERIALS AND METHODS A total of 660 female genitalia were examined for pathological conditions (macroscopic and microscopic lesions). The etiopathological study was carried out for the presence of pathogenic organisms such as Brucella, Chlamydia, and Campylobacter in the uterus and ovary. Based on the microscopic lesions, suspected samples were subjected to diagnostic polymerase chain reaction (PCR) for various etiological agents employing 16srRNA genus specific primers for Campylobacter and Chlamydophila and OMP31 gene-based PCR for Brucella melitensis and nested PCR using ITS-1 gene primers for Toxoplasma gondii. For Brucella suspected samples, immunohistochemistry (IHC) was also performed. RESULTS In studied female genitalia, 108 (16.30%) showed gross abnormalities with overall 23.32% occurrence of pathological conditions (macroscopic and microscopic lesions). Pathological involvement of the uterus was the highest 68 (62.96%), followed by the ovaries 27 (25%) and other organs. Major uterine condition observed was endometritis (5.60%). In uterine infections, 35 (5.30%) samples were found positive for Campylobacter spp., 12 (1.81%) samples for B. melitensis, and 3 (0.45%) samples were positive for Chlamydophila spp. Among the samples positive for B. melitensis by PCR, 3 were found positive by IHC also. Corynebacterium ovis was detected by PCR using specific primers in a case of hydrosalpinx. It was concluded that many pathological lesions in female genitalia of functional significance play a major role in infertility in goats. CONCLUSION The present study concluded that many pathological lesions in female genitalia of functional significance play a major role in infertility in goats.
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Affiliation(s)
- V Beena
- Division of Animal Health, ICAR-Central Institute for Research on Goats, Makhdoom, Farah, Mathura - 281 122, Uttar Pradesh, India
| | - R V S Pawaiya
- Division of Animal Health, ICAR-Central Institute for Research on Goats, Makhdoom, Farah, Mathura - 281 122, Uttar Pradesh, India
| | - K Gururaj
- Division of Animal Health, ICAR-Central Institute for Research on Goats, Makhdoom, Farah, Mathura - 281 122, Uttar Pradesh, India
| | - D D Singh
- Division of Animal Health, ICAR-Central Institute for Research on Goats, Makhdoom, Farah, Mathura - 281 122, Uttar Pradesh, India
| | - A K Mishra
- Division of Animal Health, ICAR-Central Institute for Research on Goats, Makhdoom, Farah, Mathura - 281 122, Uttar Pradesh, India
| | - N K Gangwar
- Division of Animal Health, ICAR-Central Institute for Research on Goats, Makhdoom, Farah, Mathura - 281 122, Uttar Pradesh, India
| | - V K Gupta
- Centre for Animal Disease Research and Diagnosis (CADRAD), ICAR-Indian Veterinary Research Institute, Izatnagar - 243 122, Uttar Pradesh, India
| | - R Singh
- Division of Pathology, ICAR-Indian Veterinary Research Institute, Izatnagar - 243 122, Uttar Pradesh, India
| | - A K Sharma
- Division of Pathology, ICAR-Indian Veterinary Research Institute, Izatnagar - 243 122, Uttar Pradesh, India
| | - M Karikalan
- Division of Pathology, ICAR-Indian Veterinary Research Institute, Izatnagar - 243 122, Uttar Pradesh, India
| | - Ashok Kumar
- Division of Animal Health, ICAR-Central Institute for Research on Goats, Makhdoom, Farah, Mathura - 281 122, Uttar Pradesh, India
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Lupan O, Postica V, Gröttrup J, Mishra AK, de Leeuw NH, Carreira JFC, Rodrigues J, Ben Sedrine N, Correia MR, Monteiro T, Cretu V, Tiginyanu I, Smazna D, Mishra YK, Adelung R. Hybridization of Zinc Oxide Tetrapods for Selective Gas Sensing Applications. ACS Appl Mater Interfaces 2017. [PMID: 28111948 DOI: 10.1002/adfm.201604676] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
In this work, the exceptionally improved sensing capability of highly porous three-dimensional (3-D) hybrid ceramic networks toward reducing gases is demonstrated for the first time. The 3-D hybrid ceramic networks are based on doped metal oxides (MexOy and ZnxMe1-xOy, Me = Fe, Cu, Al) and alloyed zinc oxide tetrapods (ZnO-T) forming numerous junctions and heterojunctions. A change in morphology of the samples and formation of different complex microstructures is achieved by mixing the metallic (Fe, Cu, Al) microparticles with ZnO-T grown by the flame transport synthesis (FTS) in different weight ratios (ZnO-T:Me, e.g., 20:1) followed by subsequent thermal annealing in air. The gas sensing studies reveal the possibility to control and change/tune the selectivity of the materials, depending on the elemental content ratio and the type of added metal oxide in the 3-D ZnO-T hybrid networks. While pristine ZnO-T networks showed a good response to H2 gas, a change/tune in selectivity to ethanol vapor with a decrease in optimal operating temperature was observed in the networks hybridized with Fe-oxide and Cu-oxide. In the case of hybridization with ZnAl2O4, an improvement of H2 gas response (to ∼7.5) was reached at lower doping concentrations (20:1), whereas the increase in concentration of ZnAl2O4 (ZnO-T:Al, 10:1), the selectivity changes to methane CH4 gas (response is about 28). Selectivity tuning to different gases is attributed to the catalytic properties of the metal oxides after hybridization, while the gas sensitivity improvement is mainly associated with additional modulation of the electrical resistance by the built-in potential barriers between n-n and n-p heterojunctions, during adsorption and desorption of gaseous species. Density functional theory based calculations provided the mechanistic insights into the interactions between different hybrid networks and gas molecules to support the experimentally observed results. The studied networked materials and sensor structures performances would provide particular advantages in the field of fundamental research, applied physics studies, and industrial and ecological applications.
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Affiliation(s)
- O Lupan
- Functional Nanomaterials, Institute for Materials Science, Kiel University , Kaiserstrasse 2, D-24143, Kiel, Germany
- Department of Microelectronics and Biomedical Engineering, Technical University of Moldova , 168 Stefan cel Mare Avenue, MD-2004 Chisinau, Republic of Moldova
| | - V Postica
- Department of Microelectronics and Biomedical Engineering, Technical University of Moldova , 168 Stefan cel Mare Avenue, MD-2004 Chisinau, Republic of Moldova
| | - J Gröttrup
- Functional Nanomaterials, Institute for Materials Science, Kiel University , Kaiserstrasse 2, D-24143, Kiel, Germany
| | - A K Mishra
- Department of Chemistry, University College London , 20 Gordon Street, London WC1H 0AJ, United Kingdom
- Research & Development, University of Petroleum and Energy Studies (UPES) , Bidholi, Dehradun 248007, India
| | - N H de Leeuw
- Department of Chemistry, University College London , 20 Gordon Street, London WC1H 0AJ, United Kingdom
- School of Chemistry, Cardiff University , Main Building, Park Place, Cardiff CF10 3AT, United Kingdom
| | - J F C Carreira
- Department of Physics and I3N, Institute for Nanostructures, Nanomodelling and Nanofabrication, University of Aveiro , 3810-193 Aveiro, Portugal
| | - J Rodrigues
- Department of Physics and I3N, Institute for Nanostructures, Nanomodelling and Nanofabrication, University of Aveiro , 3810-193 Aveiro, Portugal
| | - N Ben Sedrine
- Department of Physics and I3N, Institute for Nanostructures, Nanomodelling and Nanofabrication, University of Aveiro , 3810-193 Aveiro, Portugal
| | - M R Correia
- Department of Physics and I3N, Institute for Nanostructures, Nanomodelling and Nanofabrication, University of Aveiro , 3810-193 Aveiro, Portugal
| | - T Monteiro
- Department of Physics and I3N, Institute for Nanostructures, Nanomodelling and Nanofabrication, University of Aveiro , 3810-193 Aveiro, Portugal
| | - V Cretu
- Department of Microelectronics and Biomedical Engineering, Technical University of Moldova , 168 Stefan cel Mare Avenue, MD-2004 Chisinau, Republic of Moldova
| | - I Tiginyanu
- Department of Microelectronics and Biomedical Engineering, Technical University of Moldova , 168 Stefan cel Mare Avenue, MD-2004 Chisinau, Republic of Moldova
| | - D Smazna
- Functional Nanomaterials, Institute for Materials Science, Kiel University , Kaiserstrasse 2, D-24143, Kiel, Germany
| | - Y K Mishra
- Functional Nanomaterials, Institute for Materials Science, Kiel University , Kaiserstrasse 2, D-24143, Kiel, Germany
| | - R Adelung
- Functional Nanomaterials, Institute for Materials Science, Kiel University , Kaiserstrasse 2, D-24143, Kiel, Germany
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Lupan O, Postica V, Gröttrup J, Mishra AK, de Leeuw NH, Carreira JFC, Rodrigues J, Ben Sedrine N, Correia MR, Monteiro T, Cretu V, Tiginyanu I, Smazna D, Mishra YK, Adelung R. Hybridization of Zinc Oxide Tetrapods for Selective Gas Sensing Applications. ACS Appl Mater Interfaces 2017; 9:4084-4099. [PMID: 28111948 DOI: 10.1021/acsami.6b11337] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
In this work, the exceptionally improved sensing capability of highly porous three-dimensional (3-D) hybrid ceramic networks toward reducing gases is demonstrated for the first time. The 3-D hybrid ceramic networks are based on doped metal oxides (MexOy and ZnxMe1-xOy, Me = Fe, Cu, Al) and alloyed zinc oxide tetrapods (ZnO-T) forming numerous junctions and heterojunctions. A change in morphology of the samples and formation of different complex microstructures is achieved by mixing the metallic (Fe, Cu, Al) microparticles with ZnO-T grown by the flame transport synthesis (FTS) in different weight ratios (ZnO-T:Me, e.g., 20:1) followed by subsequent thermal annealing in air. The gas sensing studies reveal the possibility to control and change/tune the selectivity of the materials, depending on the elemental content ratio and the type of added metal oxide in the 3-D ZnO-T hybrid networks. While pristine ZnO-T networks showed a good response to H2 gas, a change/tune in selectivity to ethanol vapor with a decrease in optimal operating temperature was observed in the networks hybridized with Fe-oxide and Cu-oxide. In the case of hybridization with ZnAl2O4, an improvement of H2 gas response (to ∼7.5) was reached at lower doping concentrations (20:1), whereas the increase in concentration of ZnAl2O4 (ZnO-T:Al, 10:1), the selectivity changes to methane CH4 gas (response is about 28). Selectivity tuning to different gases is attributed to the catalytic properties of the metal oxides after hybridization, while the gas sensitivity improvement is mainly associated with additional modulation of the electrical resistance by the built-in potential barriers between n-n and n-p heterojunctions, during adsorption and desorption of gaseous species. Density functional theory based calculations provided the mechanistic insights into the interactions between different hybrid networks and gas molecules to support the experimentally observed results. The studied networked materials and sensor structures performances would provide particular advantages in the field of fundamental research, applied physics studies, and industrial and ecological applications.
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Affiliation(s)
- O Lupan
- Functional Nanomaterials, Institute for Materials Science, Kiel University , Kaiserstrasse 2, D-24143, Kiel, Germany
- Department of Microelectronics and Biomedical Engineering, Technical University of Moldova , 168 Stefan cel Mare Avenue, MD-2004 Chisinau, Republic of Moldova
| | - V Postica
- Department of Microelectronics and Biomedical Engineering, Technical University of Moldova , 168 Stefan cel Mare Avenue, MD-2004 Chisinau, Republic of Moldova
| | - J Gröttrup
- Functional Nanomaterials, Institute for Materials Science, Kiel University , Kaiserstrasse 2, D-24143, Kiel, Germany
| | - A K Mishra
- Department of Chemistry, University College London , 20 Gordon Street, London WC1H 0AJ, United Kingdom
- Research & Development, University of Petroleum and Energy Studies (UPES) , Bidholi, Dehradun 248007, India
| | - N H de Leeuw
- Department of Chemistry, University College London , 20 Gordon Street, London WC1H 0AJ, United Kingdom
- School of Chemistry, Cardiff University , Main Building, Park Place, Cardiff CF10 3AT, United Kingdom
| | - J F C Carreira
- Department of Physics and I3N, Institute for Nanostructures, Nanomodelling and Nanofabrication, University of Aveiro , 3810-193 Aveiro, Portugal
| | - J Rodrigues
- Department of Physics and I3N, Institute for Nanostructures, Nanomodelling and Nanofabrication, University of Aveiro , 3810-193 Aveiro, Portugal
| | - N Ben Sedrine
- Department of Physics and I3N, Institute for Nanostructures, Nanomodelling and Nanofabrication, University of Aveiro , 3810-193 Aveiro, Portugal
| | - M R Correia
- Department of Physics and I3N, Institute for Nanostructures, Nanomodelling and Nanofabrication, University of Aveiro , 3810-193 Aveiro, Portugal
| | - T Monteiro
- Department of Physics and I3N, Institute for Nanostructures, Nanomodelling and Nanofabrication, University of Aveiro , 3810-193 Aveiro, Portugal
| | - V Cretu
- Department of Microelectronics and Biomedical Engineering, Technical University of Moldova , 168 Stefan cel Mare Avenue, MD-2004 Chisinau, Republic of Moldova
| | - I Tiginyanu
- Department of Microelectronics and Biomedical Engineering, Technical University of Moldova , 168 Stefan cel Mare Avenue, MD-2004 Chisinau, Republic of Moldova
| | - D Smazna
- Functional Nanomaterials, Institute for Materials Science, Kiel University , Kaiserstrasse 2, D-24143, Kiel, Germany
| | - Y K Mishra
- Functional Nanomaterials, Institute for Materials Science, Kiel University , Kaiserstrasse 2, D-24143, Kiel, Germany
| | - R Adelung
- Functional Nanomaterials, Institute for Materials Science, Kiel University , Kaiserstrasse 2, D-24143, Kiel, Germany
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Raj P, Saini S, Mishra AK. Sound localization performance in children with cochlear implants using bimodal stimulation. Indian J Otol 2017. [DOI: 10.4103/0971-7749.199508] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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Bhatt H, Mishra AK, Murli C, Verma AK, Garg N, Deo MN, Sharma SM. Proton transfer aiding phase transitions in oxalic acid dihydrate under pressure. Phys Chem Chem Phys 2016; 18:8065-74. [PMID: 26924455 DOI: 10.1039/c5cp07442h] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Oxalic acid dihydrate, an important molecular solid in crystal chemistry, ecology and physiology, has been studied for nearly 100 years now. The most debated issues regarding its proton dynamics have arisen due to an unusually short hydrogen bond between the acid and water molecules. Using combined in situ spectroscopic studies and first-principles simulations at high pressures, we show that the structural modification associated with this hydrogen bond is much more significant than ever assumed. Initially, under pressure, proton migration takes place along this strong hydrogen bond at a very low pressure of 2 GPa. This results in the protonation of water with systematic formation of dianionic oxalate and hydronium ion motifs, thus reversing the hydrogen bond hierarchy in the high pressure phase II. The resulting hydrogen bond between a hydronium ion and a carboxylic group shows remarkable strengthening under pressure, even in the pure ionic phase III. The loss of cooperativity of hydrogen bonds leads to another phase transition at ∼ 9 GPa through reorientation of other hydrogen bonds. The high pressure phase IV is stabilized by a strong hydrogen bond between the dominant CO2 and H2O groups of oxalate and hydronium ions, respectively. These findings suggest that oxalate systems may provide useful insights into proton transfer reactions and assembly of simple molecules under extreme conditions.
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Affiliation(s)
- Himal Bhatt
- High Pressure and Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, 400 085, India.
| | - A K Mishra
- High Pressure and Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, 400 085, India.
| | - Chitra Murli
- High Pressure and Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, 400 085, India.
| | - Ashok K Verma
- High Pressure and Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, 400 085, India.
| | - Nandini Garg
- High Pressure and Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, 400 085, India.
| | - M N Deo
- High Pressure and Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, 400 085, India.
| | - Surinder M Sharma
- High Pressure and Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, 400 085, India.
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Singh AK, Kumar R, Mishra AK, Singh M, Baisvar VS, Chauhan UK, Kushwaha B, Nagpure NS. Authentication of five Barilius species from Indian waters using DNA barcoding. Genetika 2016; 52:943-950. [PMID: 29368907] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Authentic identification of fish species is essential for conserving them as a valuable genetic resource in our environment. DNA barcoding of living beings has become an important and ultimate tool for establishing their molecular identity. Among cyprinids, Barilius is an important genus having nearly 23 species in Indian region whose morphological identification is often difficult due to minute differences in their features. Five species collected from Indian waters and primarily identified as Opsarius bakeri (syn. Barilius bakeri), B. gatensis, B. vagra, B. bendelisis and B. ngawa were authenticated by their DNA barcoding based on mitochondrial COI gene sequences. Five individuals of each species were taken for barcode preparation by COI gene sequencing which yielded one barcode for B. ngawa, two barcodes each for O. bakeri, B. gatensis, B. bendelisis and three barcodes for B. vagra. The order of inter and intra-specific variation was estimated to know a preliminary status of variation prevailing in these cold stream fish species significant for evolution and conservation of these valued species of our ichthyofauna. Average variation within genera was found to be 13.6% with intra-specific variation ranging from 0.0% (B. ngawa) to 0.6% (B. gatensis). These distance data are in the same order found by various researchers globally using COI barcode sequences in different fish species. Phylogenetic relatedness among Barilius species and some other cyprinids validate their status of individual species as established by conventional taxonomy.
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