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Neal K, Amachawadi RG, White BJ, Shippy TD, Theurer ME, Larson RL, Lubbers BV, Kleinhenz M. Nasopharyngeal Bacterial Prevalence and Microbial Diversity at First Treatment for Bovine Respiratory Disease (BRD) and Its Associations with Health and Mortality Outcomes in Feedyard Cattle. Microorganisms 2023; 12:33. [PMID: 38257861 PMCID: PMC10818627 DOI: 10.3390/microorganisms12010033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Revised: 12/17/2023] [Accepted: 12/21/2023] [Indexed: 01/24/2024] Open
Abstract
Bovine respiratory disease (BRD) is an economically important disease in feedyards influencing both animal welfare and antimicrobial utilization. Major pathogens associated with BRD have been identified in previous research, but little information is available on the relationship between nasopharyngeal microbiota and health outcomes. The objective of this study was to identify potential associations between nasopharyngeal microbiota and antimicrobial resistance patterns of clinical cases that lived or died compared to non-diseased controls. Enrolled animals were subdivided based on clinical disease status and case outcome (subsequent mortality). Deep nasopharyngeal swabs were collected on enrolled animals and submitted for bacterial isolation, antimicrobial susceptibility determination, and metagenomics analysis. Enrolled cattle were represented in three groups: animals at first treatment for BRD that subsequently died (BRDM, n = 9), animals at first treatment for BRD that subsequently lived (BRDL, n = 15), and animals that were never treated for BRD during the feeding phase (CONT, n = 11). Antimicrobial resistance patterns for Pasteurella multocida illustrated cattle in each outcome category had isolates that were pan-susceptible or only showed resistance to oxytetracycline. The relative abundance of species and genera illustrated few differences among the three outcomes. Higher alpha diversity was identified in BRDL compared to CONT at the species level, and both BRDL and BRDM showed increased alpha diversity compared to CONT at the general level. Overall, this work illustrated nasopharyngeal microbiota showed relatively few differences among BRD cases that lived or died compared to animals without BRD.
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Affiliation(s)
- Kyndall Neal
- Beef Cattle Institute, Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA; (K.N.); (B.J.W.); (R.L.L.); (B.V.L.)
| | - Raghavendra G. Amachawadi
- Beef Cattle Institute, Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA; (K.N.); (B.J.W.); (R.L.L.); (B.V.L.)
| | - Brad J. White
- Beef Cattle Institute, Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA; (K.N.); (B.J.W.); (R.L.L.); (B.V.L.)
| | - Teresa D. Shippy
- Data Science Center, Division of Biology, Kansas State University, Manhattan, KS 66506, USA;
| | - Miles E. Theurer
- Veterinary Research and Consulting Services LLC, Hays, KS 67601, USA;
| | - Robert L. Larson
- Beef Cattle Institute, Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA; (K.N.); (B.J.W.); (R.L.L.); (B.V.L.)
| | - Brian V. Lubbers
- Beef Cattle Institute, Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA; (K.N.); (B.J.W.); (R.L.L.); (B.V.L.)
| | - Michael Kleinhenz
- Veterinary Education, Research and Outreach, Texas A&M University, Canyon, TX 79015, USA;
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Sawhney SS, Vargas RC, Wallace MA, Muenks CE, Lubbers BV, Fritz SA, Burnham CAD, Dantas G. Diagnostic and commensal Staphylococcus pseudintermedius genomes reveal niche adaptation through parallel selection of defense mechanisms. Nat Commun 2023; 14:7065. [PMID: 37923729 PMCID: PMC10624692 DOI: 10.1038/s41467-023-42694-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Accepted: 10/19/2023] [Indexed: 11/06/2023] Open
Abstract
Staphylococcus pseudintermedius is historically understood as a prevalent commensal and pathogen of dogs, though modern clinical diagnostics reveal an expanded host-range that includes humans. It remains unclear whether differentiation across S. pseudintermedius populations is driven primarily by niche-type or host-species. We sequenced 501 diagnostic and commensal isolates from a hospital, veterinary diagnostic laboratory, and within households in the American Midwest, and performed a comparative genomics investigation contrasting human diagnostic, animal diagnostic, human colonizing, pet colonizing, and household-surface S. pseudintermedius isolates. Though indistinguishable by core and accessory gene architecture, diagnostic isolates harbor more encoded and phenotypic resistance, whereas colonizing and surface isolates harbor similar CRISPR defense systems likely reflective of common household phage exposures. Furthermore, household isolates that persist through anti-staphylococcal decolonization report elevated rates of base-changing mutations in - and parallel evolution of - defense genes, as well as reductions in oxacillin and trimethoprim-sulfamethoxazole susceptibility. Together we report parallel niche-specific bolstering of S. pseudintermedius defense mechanisms through gene acquisition or mutation.
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Affiliation(s)
- Sanjam S Sawhney
- The Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO, USA
| | - Rhiannon C Vargas
- The Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO, USA
| | - Meghan A Wallace
- Department of Pathology and Immunology, Division of Laboratory and Genomic Medicine, Washington University School of Medicine, St. Louis, MO, USA
| | - Carol E Muenks
- Department of Pathology and Immunology, Division of Laboratory and Genomic Medicine, Washington University School of Medicine, St. Louis, MO, USA
| | - Brian V Lubbers
- Department of Clinical Sciences, Kansas State University, Manhattan, KS, USA
| | - Stephanie A Fritz
- Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA
| | - Carey-Ann D Burnham
- Department of Pathology and Immunology, Division of Laboratory and Genomic Medicine, Washington University School of Medicine, St. Louis, MO, USA.
- Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.
- Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.
- Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, MO, USA.
| | - Gautam Dantas
- The Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO, USA.
- Department of Pathology and Immunology, Division of Laboratory and Genomic Medicine, Washington University School of Medicine, St. Louis, MO, USA.
- Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.
- Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, MO, USA.
- Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO, USA.
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Papich MG, Gunnett LA, Lubbers BV. Revision of fluoroquinolone breakpoints used for interpretation of antimicrobial susceptibility testing of canine bacterial isolates. Am J Vet Res 2023; 84:ajvr.23.07.0159. [PMID: 37673214 DOI: 10.2460/ajvr.23.07.0159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Accepted: 08/12/2023] [Indexed: 09/08/2023]
Abstract
The fluoroquinolone antimicrobial agents, enrofloxacin and marbofloxacin, were US Food and Drug Administration (FDA) approved in the United States for use in dogs in 1988 and 1999, respectively. There have been many advances since then concerning the pharmacokinetic-pharmacodynamic (PK-PD) evaluation of fluoroquinolones, and there are data available on the susceptibility of targeted pathogens since the original approval. Using this information, the Clinical and Laboratory Standards Institute (CLSI) Veterinary Antimicrobial Susceptibility Testing Subcommittee (VAST) revised its antimicrobial susceptibility testing breakpoints. The previous breakpoints (used in older editions of CLSI standards) for enrofloxacin in dogs were susceptible (S), ≤ 0.5 µg/mL, intermediate (I) 1-2 µg/mL, and resistant (R) ≥ 4 µg/mL. The new breakpoints are S ≤ 0.06 µg/mL for a dose of 5 mg/kg, 0.12 µg/mL for a dose of 10 mg/kg, 0.25 µg/mL for a high dose of 20 mg/kg, and R ≥ 0.5 µg/mL. The breakpoints of 0.12 and 0.25 µg/mL represent a new susceptible-dose dependent (SDD) category. For marbofloxacin, previous breakpoints were S, ≤ 1 µg/mL, I 2 µg/mL, and R ≥ 4 µg/mL. The new breakpoints are S ≤ 0.12 µg/mL for a dose of 2.8 mg/kg, 0.25 µg/mL for a dose of 5.5 mg/kg (SDD), and R ≥ 0.5 µg/mL. The new breakpoints will be published in the next edition of CLSI-Vet01(S) and deviate considerably from the prior breakpoints. Laboratories are encouraged to revise their testing standards. These changes will likely reduce the unnecessary use of these fluoroquinolones in dogs.
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Affiliation(s)
- Mark G Papich
- College of Veterinary Medicine, North Carolina State University, Raleigh, North Carolina
| | | | - Brian V Lubbers
- College of Veterinary Medicine, Kansas State University, Manhattan, Kansas
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Burbick CR, Fajt VR, Frey E, Fritz H, Goodman LB, Lorenz C, Lubbers BV, Marshall E, Rankin SC, Silva M. Benefits and challenges of creating veterinary antibiograms for empiric antimicrobial selection in support of antimicrobial stewardship and advancement of one-health goals. Am J Vet Res 2023; 84:ajvr.23.05.0086. [PMID: 37315936 DOI: 10.2460/ajvr.23.05.0086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Accepted: 06/05/2023] [Indexed: 06/16/2023]
Abstract
Antibiograms are important tools for antimicrobial stewardship that are often underutilized in veterinary medicine. Antibiograms summarize cumulative antimicrobial susceptibility testing (AST) data for specific pathogens over a defined time period; in veterinary medicine, they are often stratified by host species and site of infection. They can aid practitioners with empiric therapy choices and assessment of antimicrobial resistance trends within a population in support of one-health goals for antimicrobial stewardship. For optimal application, consideration must be given to the number of isolates used, the timeframe of sample collection, laboratory analytical methodology, and the patient population contributing to the data (eg, treatment history, geographic region, and production type). There are several limitations to veterinary antibiograms, including a lack of breakpoint availability for bacterial species, a lack of standardization of laboratory methodology and technology for culture and AST, and a lack of funding to staff veterinary diagnostic laboratories at a level that supports antibiogram development and education. It is vital that veterinarians who use antibiograms understand how to apply them in practice and receive relevant information pertaining to the data to utilize the most appropriate antibiogram for their patients. This paper explores the benefits and challenges of developing and using veterinary antibiograms and proposes strategies to enhance their applicability and accuracy. Further detail regarding the application of veterinary antibiograms by privately practicing clinicians is addressed in the companion Currents in One Health article by Lorenz et al (JAVMA, September 2023).
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Affiliation(s)
- Claire R Burbick
- Department of Veterinary Microbiology and Pathology, Washington State University, Pullman, WA
| | - Virginia R Fajt
- Department of Veterinary Physiology and Pharmacology, School of Veterinary Medicine, Texas A&M University, College Station, TX
| | - Erin Frey
- Department of Clinical Sciences, North Carolina State University, Raleigh, NC
| | - Heather Fritz
- California Animal Health and Food Safety Laboratory System, University of California, Davis, CA
| | - Laura B Goodman
- Department of Public and Ecosystem Health, Cornell University, Ithaca, NY
| | | | - Brian V Lubbers
- Department of Clinical Sciences, Kansas State University, Manhattan, KS
| | - Edith Marshall
- California Department of Food and Agriculture, Sacramento, CA
| | | | - Marissa Silva
- California Department of Food and Agriculture, Sacramento, CA
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Apley MD, Schrag NFD, Amrine DE, Lubbers BV, Singer RS. Antimicrobial use in 20 U.S. beef feedyards: 2018-2019. Front Vet Sci 2023; 10:1056362. [PMID: 37051510 PMCID: PMC10083271 DOI: 10.3389/fvets.2023.1056362] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Accepted: 02/27/2023] [Indexed: 03/29/2023] Open
Abstract
The objective of this study was to report antimicrobial use in a convenience sample of U.S. beef feedyards for the years 2018 and 2019. In addition to antimicrobial use metrics, also reported are the indications for antimicrobial use and outcomes related to these indications. Antimicrobial use is characterized at the study and feedyard levels for a total of 1,141,846 head of cattle in 20 U.S. feedyards. Antimicrobial use is reported as milligrams of active antimicrobial ingredient per kilogram of liveweight sold (mg/kg-LW) and regimens of antimicrobials per animal year (Reg/AY). Regimens are described by antimicrobial class within use category as characterized by mg of active antimicrobial product per regimen (mg/Reg) and calendar days of administration per regimen (CDoA/Reg). A total of 1,128,515 regimens of medically important antimicrobials were captured from records. The number of regimens/100 head-in (Reg/100 head-in) are described in a subset of 10 feedyards with adequate data granularity to directly determine indications for antimicrobial administration. For the indications of bovine respiratory disease (BRD), Lameness (Lame), Liver Abscess Control (LAC), and Other (e.g., central nervous system disease, cellulitis) the Reg/100 head-in study-level values are 37.1, 0.8, 98.4, and 0.7, respectively, for 2018, with similar values for 2019. The regimens for BRD are further categorized in these 10 feedyards by the use categories in-feed, control of BRD, and individual animal therapy, yielding study level values of 4.6, 19.6, and 12.9 Reg/100 head-in, respectively, for 2018, with similar values for 2019. Outcomes of therapy for individual animal treatment of BRD, Lame, and Other are reported as treatment success, retreatment, or mortality by 30 days after the initial therapy of an animal for a disease. Treatment success rates (no treatment or mortality in the next 30 days) for 2018 in the 10 feedyards with sufficient data granularity are 76.5, 86.5, and 83.0% for BRD, Lame, and Other, respectively. The comparison of these results with other reports of antimicrobial use in North American feedyards highlights how differing approaches in calculating metric values may result in substantially different conclusions regarding antimicrobial use, especially in relation to long-duration uses.
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Affiliation(s)
- Michael D. Apley
- Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, KS, United States
| | | | - David E. Amrine
- Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, KS, United States
| | - Brian V. Lubbers
- Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, KS, United States
| | - Randall S. Singer
- Department of Veterinary and Biomedical Sciences, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, United States
- Mindwalk Consulting Group, LLC, Falcon Heights, MN, United States
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Fajt VR, Lubbers BV. Application and Interpretation of Antimicrobial Susceptibility Testing. Vet Clin North Am Food Anim Pract 2023; 39:115-128. [PMID: 36731992 DOI: 10.1016/j.cvfa.2022.09.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Abstract
Antimicrobial susceptibility testing (AST) is an important component of antimicrobial stewardship. This article discusses how AST methods and breakpoints are developed, describes when AST may or may not be useful in clinical practice, and discusses how to interpret AST results from bacterial isolates from cattle, sheep, and goats. Discussion of when AST is not appropriate or when veterinarians should have low confidence in AST results is also included. Applicability of genomic testing for antimicrobial susceptibility is briefly addressed.
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Affiliation(s)
- Virginia R Fajt
- Veterinary Physiology and Pharmacology, Texas A&M University, 4466 TAMU, College Station, TX 77843, USA.
| | - Brian V Lubbers
- Food Animal Therapeutics - Outreach, Kansas State University, P203 Mosier Hall, Manhattan, KS 66506, USA
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Lubbers BV, Fajt VR, Teller LM, Apley MD, Stillisano J. Using telehealth clinical case vignettes to enhance clinical confidence and competence in veterinary students. Front Vet Sci 2023; 9:1075752. [PMID: 36727037 PMCID: PMC9884685 DOI: 10.3389/fvets.2022.1075752] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Accepted: 12/30/2022] [Indexed: 01/18/2023] Open
Abstract
Veterinarians contribute substantially to the health of their patients and enhance the communities in which they live. Delivery of veterinary curricula continues to evolve to ensure that veterinary graduates are prepared to meet their professional obligations on Day One of their careers. In this study, veterinary practitioners were recruited to deliver telehealth case rounds to veterinary students at Kansas State University and Texas A&M University. Case discussions were hosted virtually once per month in the 2020-2021 and 2021-2022 academic years for a total of 16 sessions. Each presenting practitioner was instructed to develop a brief presentation for a case routinely seen in their practice, and to discuss important clinical decision points in diagnosis, treatment and management. Cases could also highlight important ethical or communication issues encountered in veterinary medicine. The overall goals of this project were to increase the quantity and diversity of clinical cases to which veterinary students were exposed during their professional training and to evaluate the feasibility and acceptability of telehealth technology as a teaching strategy. Student participants were surveyed to determine the effectiveness of telehealth sessions in increasing overall confidence and competence in case management, and veterinary presenters were surveyed to determine motivations for participating in the project and perceived value of the telehealth sessions. More than 95% of students indicated that participation in telehealth sessions increased their clinical confidence and competence. Presenting practitioners unanimously indicated that they would participate in similar instruction in the future. Recommendations are provided to improve the educational experience for future adopters of telehealth teaching sessions.
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Affiliation(s)
- Brian V. Lubbers
- Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, KS, United States,*Correspondence: Brian V. Lubbers ✉
| | - Virginia R. Fajt
- Veterinary Physiology and Pharmacology, School of Veterinary Medicine, Texas A&M University, College Station, TX, United States
| | - Lori M. Teller
- Veterinary Small Animal Clinical Sciences, School of Veterinary Medicine, Texas A&M University, College Station, TX, United States
| | - Michael D. Apley
- Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, KS, United States
| | - Jacqueline Stillisano
- School of Education and Human Development, Texas A&M University, College Station, TX, United States
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Apley MD, Schrag NFD, Amrine DE, Lubbers BV, Singer RS. The association of multiple metrics for evaluating antimicrobial use in U.S. beef feedyards. Front Vet Sci 2023; 9:1056476. [PMID: 36686188 PMCID: PMC9848654 DOI: 10.3389/fvets.2022.1056476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Accepted: 12/01/2022] [Indexed: 01/06/2023] Open
Abstract
In order to accurately portray antimicrobial use in food animals, the need for standardized metrics, and an understanding of the characteristics of different metrics, has long been recognized. Fourteen U.S. feedyards were used to evaluate the effects of using centralized constants such as defined daily dose (DDD) and defined course dose (DCD) applied to the weight of medically important antimicrobials by class (mg) as opposed to using electronic individual animal treatment records and lot level in-feed antimicrobial records obtained from the same population. Three numerators were calculated directly from recorded data for each drug product: the number of antimicrobial regimens associated with indication (Reg), milligrams of drug administered per regimen (mg), and calendar days of administration for each regimen (CDoA). There were four use indications to which numerators were assigned: liver abscess control (LAC), bovine respiratory disease (BRD), lameness (lame), or all other indications combined (other). Three denominators were also calculated directly from the data, these being the number of days animals were present (head days), number of cattle received (head in), and kilograms of live weight sold (kg-LW). Numerators and denominators were calculated at the lot level. The use of DDD or DCD was explored to determine how their use would affect interpretation of comparisons between lots or feedyards. At the lot level across both study years, the lot estimate of nDDD differed from the CDoA value by >25% in 49.2% of the lots. The number of Defined Course Doses (nDCD) was then compared to the number of Regimens (Reg). Comparing nDCD to Reg at the lot level across both study years, the lot estimate of nDCD differed from the Reg value by >25% in 46.4% of lots. Both year and metric were also shown to affect numerical feedyard ranking by antimicrobial use according to seven different metrics. The analysis reported here adds to the body of literature reporting substantial effects of metric choice on the conclusions drawn from comparing antimicrobial use across multiple production sites.
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Affiliation(s)
- Michael D. Apley
- Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, KS, United States
| | | | - David E. Amrine
- Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, KS, United States
| | - Brian V. Lubbers
- Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, KS, United States
| | - Randall S. Singer
- Department of Veterinary and Biomedical Sciences, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, United States
- Mindwalk Consulting Group, LLC, Falcon Heights, MN, United States
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Schrag NFD, Godden SM, Singer RS, Lombard JE, Wenz JR, Amrine DE, Lubbers BV, Apley MD. Improving farm-level antimicrobial stewardship benchmarks by reporting antimicrobial use within the context of both the magnitude of disease pressure and the outcome of therapy. Front Vet Sci 2022; 9:1022557. [PMID: 36277073 PMCID: PMC9581275 DOI: 10.3389/fvets.2022.1022557] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Accepted: 09/14/2022] [Indexed: 11/04/2022] Open
Abstract
This manuscript explores a method of benchmarking antimicrobial use within the context of farm level therapeutic incidence (a proxy for disease incidence), and the outcome of that therapy. This is reported both within the same farm over time (2016–2019), as well as evaluated across participating farms. Reporting antimicrobial use in this format addresses multiple primary questions necessary for evaluating on farm antimicrobial stewardship: How much disease is recorded? How much antimicrobial use is recorded? How often are antimicrobials included in therapy for each disease? What is the outcome of therapy? The three primary metrics reported are: therapeutic events per 100 cow years (TE/100CY), antimicrobial regimens per 100 cow years (REG/100CY), and the percent therapeutic success (% Success). Success was defined as: the cow remained in the herd and had no further TE recorded within 30 days of the end of the TE being evaluated. These measures identify opportunities for change on an individual farm, such as improvement in disease prevention, or a change in choices about when to include an antimicrobial in the treatment protocol. Therapeutic outcomes provide additional context, in some instances demonstrating differences in recording practices and case definitions, while in other cases serving to safeguard animal welfare as efforts are made to decrease antimicrobial use in the future. Although developed for farm level reporting, the metrics may also be more broadly summarized to meet future reporting requirements for marketing chain or national level antimicrobial use reports. The process outlined here serves as a prototype to be considered when developing antimicrobial use reporting systems where farm level antimicrobial stewardship is the primary objective.
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Affiliation(s)
- Nora F. D. Schrag
- College of Veterinary Medicine, Department of Clinical Sciences Kansas State University, Manhattan, KS, United States,Livestock Veterinary Resources, LLC, Manhattan, KS, United States
| | - Sandra M. Godden
- Department of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN, United States
| | - Randall S. Singer
- Department of Veterinary and Biomedical Sciences, University of Minnesota, Saint Paul, MN, United States,Mindwalk Consulting Group, Falcon Heights, MN, United States
| | - Jason E. Lombard
- USDA Animal and Plant Health Inspection Service, Field Epidemiological Investigation Services, Fort Collins, CO, United States
| | - John R. Wenz
- Department of Veterinary Clinical Science, College of Veterinary Medicine, Washington State University, Pullman, WA, United States,The HEALTHSUM Syndicate, LLC, Sunnyside, WA, United States
| | - David E. Amrine
- College of Veterinary Medicine, Department of Clinical Sciences Kansas State University, Manhattan, KS, United States
| | - Brian V. Lubbers
- College of Veterinary Medicine, Department of Clinical Sciences Kansas State University, Manhattan, KS, United States
| | - Michael D. Apley
- College of Veterinary Medicine, Department of Clinical Sciences Kansas State University, Manhattan, KS, United States,*Correspondence: Michael D. Apley
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Apley MD, Lubbers BV. Letter to the Editor regarding 'The publication of studies involving the use of human critically important antimicrobial agents in veterinary species'. J Vet Pharmacol Ther 2021; 44:990-991. [PMID: 34755366 DOI: 10.1111/jvp.13019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Accepted: 09/20/2021] [Indexed: 11/26/2022]
Affiliation(s)
- Michael D Apley
- Department of Clinical Sciences, Kansas State University, Manhattan, Kansas, USA
| | - Brian V Lubbers
- Department of Clinical Sciences, Kansas State University, Manhattan, Kansas, USA
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Erol E, Shaffer CL, Lubbers BV. Synergistic combinations of clarithromycin with doxycycline or minocycline reduce the emergence of antimicrobial resistance in Rhodococcus equi. Equine Vet J 2021; 54:799-806. [PMID: 34480367 DOI: 10.1111/evj.13508] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Revised: 07/08/2021] [Accepted: 08/27/2021] [Indexed: 12/28/2022]
Abstract
BACKGROUND The alarming increase in rifampin and macrolide resistance among Rhodococcus equi isolates highlights the need to identify alternative therapeutic options that can effectively control rhodococcosis in foals while limiting the further development of drug resistance. OBJECTIVES To evaluate bacterial killing, antibiotic synergism and mutant prevention concentrations (MPCs) of clarithromycin alone and in combination with doxycycline, minocycline or rifampin against clinical isolates of R equi. STUDY DESIGN In vitro experiments. METHODS Bacterial time-kill, fractional inhibitory concentration (checkerboard) and mutant prevention concentration assays were evaluated in four clarithromycin- and rifampin-susceptible (ClaS /RifS ) and two clarithromycin- and rifampin-resistant (ClaR /RifR ) R equi clinical strains. RESULTS In this study evaluating a limited number of isolates, combinations of clarithromycin with doxycycline or minocycline, but not with rifampin, were generally synergistic in both ClaS /RifS and ClaR /RifR strains as determined by checkerboard testing. In time-kill assays, all antibiotics, both alone and in combination, reduced viable ClaS /RifS R equi by more than 3 log10 at 24 hours compared with control cultures without antibiotics. Combinations of clarithromycin with doxycycline, minocycline or rifampin induced significantly lower MPC values compared with the individual antimicrobials alone for all ClaS /RifS R equi strains, resulting in a narrower mutant selection window (MSW). However, clarithromycin/rifampin combination did not markedly decrease MPCs of the individual antimicrobials in ClaR /RifR R equi isolates, and the observed decrease in MPCs for doxycycline or minocycline did not generally differ when combined with clarithromycin. MAIN LIMITATIONS The number of analysed R equi isolates was limited. In vitro outcomes require clinical confirmation. CONCLUSIONS Dual therapy combinations consisting of clarithromycin with doxycycline or minocycline merit consideration as a treatment protocol against R equi in foals due to in vitro synergy. These combination therapies may also minimise the emergence of antimicrobial resistance in cases of rhodococcosis.
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Affiliation(s)
- Erdal Erol
- Department of Veterinary Science and the Veterinary Diagnostic Laboratory, University of Kentucky, Lexington, KY, USA
| | - Carrie L Shaffer
- Department of Veterinary Science and the Gluck Equine Research Center, University of Kentucky, Lexington, KY, USA
| | - Brian V Lubbers
- Department of Clinical Sciences, Kansas State University, Manhattan, KS, USA
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12
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Chitko-McKown CG, Bierman SL, Kuehn LA, Bennett GL, DeDonder KD, Apley MD, Harhay GP, Clawson ML, White BJ, Larson RL, Capik SF, Lubbers BV. Detection of bovine inflammatory cytokines IL-1β, IL-6, and TNF-α with a multiplex electrochemiluminescent assay platform. Vet Immunol Immunopathol 2021; 237:110274. [PMID: 34091257 DOI: 10.1016/j.vetimm.2021.110274] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Revised: 05/19/2021] [Accepted: 05/20/2021] [Indexed: 10/21/2022]
Abstract
Commercially available bovine-specific assays are limited in number, and multiplex assays for this species are rare. Our objective was to develop a multiplex assay for the bovine inflammatory cytokines IL-1β, IL-6, and TNF-α using the Meso Scale Discovery U-PLEX platform. "Do-It-Yourself" ELISA kits that contained polyclonal antibodies, both unlabeled and biotinylated, and the specific recombinant bovine cytokine standard, were purchased for each of these three cytokines. The biotinylated antibodies were coupled to linkers that bind to specific locations within each well of the U-PLEX plate. Unique linkers were used for each of the cytokines. The unlabeled antibodies were conjugated with electrochemiluminescent labels to serve as detection antibodies. Each cytokine assay was optimized individually prior to performing an optimization on the multiplex assay containing reagents for all three cytokines. To calculate cytokine concentrations, standard curves were developed using the recombinant cytokines and were run concurrently on each plate. Standard curves for IL-1β and TNF-α were run at concentrations ranging from 0 to 50,000 pg/mL, and for IL-6 from 0 to 10,000 pg/mL. The average lowest level of detection concentration measured by the standard curves were 5.3 pg/mL, 0.92 pg/mL, and 22.34 pg/mL for IL-1β, IL-6, and TNF-α respectively, as determined by data from seven plates containing bovine plasma samples from a combination of healthy and diseased cattle. The U-PLEX platform was a viable means to develop custom analyte- and species-specific multiplex assays using privately developed or purchased sets of commercially available reagents.
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Affiliation(s)
- Carol G Chitko-McKown
- Genetics, Breeding and Animal Health Research Unit, USDA-ARS, U.S. Meat Animal Research Center, USDA-ARS, Clay Center, NE, USA.
| | - Stacy L Bierman
- Genetics, Breeding and Animal Health Research Unit, USDA-ARS, U.S. Meat Animal Research Center, USDA-ARS, Clay Center, NE, USA
| | - Larry A Kuehn
- Genetics, Breeding and Animal Health Research Unit, USDA-ARS, U.S. Meat Animal Research Center, USDA-ARS, Clay Center, NE, USA
| | - Gary L Bennett
- Genetics, Breeding and Animal Health Research Unit, USDA-ARS, U.S. Meat Animal Research Center, USDA-ARS, Clay Center, NE, USA
| | - Keith D DeDonder
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, USA
| | - Michael D Apley
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, USA
| | - Gregory P Harhay
- Genetics, Breeding and Animal Health Research Unit, USDA-ARS, U.S. Meat Animal Research Center, USDA-ARS, Clay Center, NE, USA
| | - Michael L Clawson
- Genetics, Breeding and Animal Health Research Unit, USDA-ARS, U.S. Meat Animal Research Center, USDA-ARS, Clay Center, NE, USA
| | - Bradley J White
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, USA
| | - Robert L Larson
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, USA
| | - Sarah F Capik
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, USA
| | - Brian V Lubbers
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, USA
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13
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Schrag NFD, Godden SM, Apley MD, Singer RS, Lubbers BV. Antimicrobial use quantification in adult dairy cows - Part 3 - Use measured by standardized regimens and grams on 29 dairies in the United States. Zoonoses Public Health 2021; 67 Suppl 1:82-93. [PMID: 33201606 DOI: 10.1111/zph.12773] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Revised: 08/31/2020] [Accepted: 09/17/2020] [Indexed: 12/27/2022]
Abstract
This study describes antimicrobial use in terms of standardized regimens per cow year (REG/CY) and grams per cow year (GMS/CY) for 29 dairies in the United States during the years 2016 and 2017. To explore potential priorities for antimicrobial stewardship programs, these measures were stratified by both disease syndrome and antimicrobial class. Potential confounders of use measurements are discussed and challenges for measure interpretation are identified. When measured as REG/CY, the results indicate that mastitis is the disease syndrome with the greatest contribution to overall antimicrobial use. However, when GMS/CY is measured, metritis, lameness and unknown disease syndromes are also significant contributors. When use is stratified by antimicrobial class, measures of REG/CY indicate the greatest magnitude of use is the cephalosporin class. However, when measures of GMS/CY are stratified by drug class, use within the penicillin class contributes more than any other single class. These differences highlight the need for a more complete understanding of the relationship between antimicrobial use measures and their relationship to antimicrobial resistance selection pressure.
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Affiliation(s)
- Nora F D Schrag
- College of Veterinary Medicine, Department of Clinical Sciences Kansas State University, Manhattan, KS, USA
| | - Sandra M Godden
- Department of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN, USA
| | - Michael D Apley
- College of Veterinary Medicine, Department of Clinical Sciences Kansas State University, Manhattan, KS, USA
| | - Randall S Singer
- Department of Veterinary and Biomedical Sciences, University of Minnesota, Saint Paul, MN, USA.,Mindwalk Consulting Group, Falcon Heights, MN, USA
| | - Brian V Lubbers
- College of Veterinary Medicine, Department of Clinical Sciences Kansas State University, Manhattan, KS, USA
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14
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Hope KJ, Apley MD, Schrag NFD, Lubbers BV, Singer RS. Antimicrobial use in 22 U.S. beef feedyards: 2016-2017. Zoonoses Public Health 2021; 67 Suppl 1:94-110. [PMID: 33201603 DOI: 10.1111/zph.12775] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Revised: 09/18/2020] [Accepted: 09/24/2020] [Indexed: 12/17/2022]
Abstract
This study describes antimicrobial use in 22 U.S. beef feedyards by use of two metrics: milligrams of antimicrobial per kilogram of liveweight sold (mg/kg-LW) and antimicrobial regimens per animal year (Reg/AY). The primary objectives were to determine the feasibility of collecting antimicrobial use data at the level of the production system and to identify factors unique to feedyard systems which may confound interpretation of summarized antimicrobial use measures. Records were accessed directly from feedyards or through a data intermediary and then subjected to a process of standardization and quality assurance. Use is reported at the study level with all individual cattle lots from all feedyards combined, as well as at the feedyard level where values were first calculated for each feedyard and then expressed as means, standard deviations and median values. Use at the study level is first reported by antimicrobial class and then by antimicrobial class within the use categories of in-feed, control of bovine respiratory disease (BRD) and individual animal treatment. Due to wide variations of antimicrobial class within use category, feedyard level antimicrobial use is reported only by antimicrobial class. Use values for medically important and not medically important antimicrobial classes are reported separately. Regimens are described for each antimicrobial class within use category by milligrams per regimen and by timeframe from first to last administration. The authors' selection of measures reported here was driven by a desire to minimize necessary assumptions, resulting in transparent reporting of values which can be directly related back to the factors within feedyard systems which may have influenced calculations. Reporting the number of regimens stratified by antimicrobial class within use category and then describing the characteristics of the reported regimens (milligrams per regimen and timeframe) optimize these objectives for reporting.
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Affiliation(s)
- Katie J Hope
- College of Veterinary Medicine, Department of Clinical Sciences, Kansas State University, Manhattan, KS, USA
| | - Michael D Apley
- College of Veterinary Medicine, Department of Clinical Sciences, Kansas State University, Manhattan, KS, USA
| | - Nora F D Schrag
- College of Veterinary Medicine, Department of Clinical Sciences, Kansas State University, Manhattan, KS, USA
| | - Brian V Lubbers
- College of Veterinary Medicine, Department of Clinical Sciences, Kansas State University, Manhattan, KS, USA
| | - Randall S Singer
- Department of Veterinary and Biomedical Sciences, University of Minnesota, St. Paul, MN, USA.,Mindwalk Consulting Group, LLC, Falcon Heights, MN, USA
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15
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Hope KJ, Apley MD, Schrag NFD, Lubbers BV, Singer RS. Comparison of surveys and use records for quantifying medically important antimicrobial use in 18 U.S. Beef Feedyards. Zoonoses Public Health 2021; 67 Suppl 1:111-123. [PMID: 33201605 DOI: 10.1111/zph.12778] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2020] [Revised: 10/05/2020] [Accepted: 10/07/2020] [Indexed: 11/27/2022]
Abstract
The objective of this study was to evaluate agreement between medically important antimicrobial use metrics derived from in-person surveys of feedyard management as opposed to metrics derived from production unit-level antimicrobial use records. Survey respondents were asked to estimate values which would allow calculation of the metrics of regimens per animal year (Reg/AY) and milligrams of antimicrobial per kilogram of liveweight sold (mg/kg-LW). At the study level, values were calculated by antimicrobial class within the use categories of in-feed use, control of bovine respiratory disease (BRD) and individual animal treatment. At the feedyard level, values were calculated by total overall use and total use within use category. Feedyard level correlation coefficients between survey and record values for total use were 0.76 (p = .0004) and 0.73 (p = .0009) for Reg/AY and mg/kg-LW, respectively. Correlation coefficients for use category within metric ranged from 0.25 (p = .3224) to 0.65 (p = .0061). Comparing feedyard level survey and record values for total Reg/AY and mg/kg-LW using a Wilcoxon signed-rank test resulted in p-values (95% CI) of 0.3247 (-1.06, 0.25) and 0.7019 (-14.49, 10.387), respectively. Evaluation of comparative rankings as total use by metric indicated that for Reg/AY, only two of the five top-ranked feedyards were consistent between the two data sources. The relationship for mg/kg-LW demonstrated the lowest two and highest three values were consistent between sources; however, the ranking similarities appear to markedly decline in the middle ranks. This report demonstrates that survey-based antimicrobial use data may closely reflect summary values determined from records across multiple beef feedyards. However, individual feedyard relationships between their record and survey values vary widely and ranking by survey may lead to different conclusions as to highest and lowest use than ranking by data collected from use records.
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Affiliation(s)
- Katie J Hope
- College of Veterinary Medicine, Department of Clinical Sciences, Kansas State University, Manhattan, KS, USA
| | - Michael D Apley
- College of Veterinary Medicine, Department of Clinical Sciences, Kansas State University, Manhattan, KS, USA
| | - Nora F D Schrag
- College of Veterinary Medicine, Department of Clinical Sciences, Kansas State University, Manhattan, KS, USA
| | - Brian V Lubbers
- College of Veterinary Medicine, Department of Clinical Sciences, Kansas State University, Manhattan, KS, USA
| | - Randall S Singer
- Department of Veterinary and Biomedical Sciences, University of Minnesota, St. Paul, MN, USA.,Mindwalk Consulting Group, LLC, Falcon Heights, MN, USA
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16
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Schrag NFD, Apley MD, Godden SM, Singer RS, Lubbers BV. Antimicrobial use quantification in adult dairy cows - Part 2 - Developing a foundation for pharmacoepidemiology by comparing measurement methods. Zoonoses Public Health 2021; 67 Suppl 1:69-81. [PMID: 33201608 DOI: 10.1111/zph.12772] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Revised: 09/14/2020] [Accepted: 09/19/2020] [Indexed: 01/03/2023]
Abstract
As stewardship programmes seek to influence therapeutic choices and reduce resistance selection pressure, it is essential to understand the multiple factors which may influence any given antimicrobial use measure. This article compares 9 measures of antimicrobial use pertaining to adult cows in US dairy systems based on treatment records standardized to a single standardized regimen (SReg) format. There are 3 fundamental parameters underlying the nine measures: amount of active substance (AMOUNT), number of SRegs (ANIMALS) and treatment time (TIME). Additionally, three use categories were considered in the analysis: control of mastitis (Dry Cow), treatment of detected mastitis (Clinical Mastitis) and treatment of other diseases (Other Treatment). The assumptions necessary for calculation of each of the nine measures are identified. The influence of measure choice on farm rank was explored at the farm level both within and across fundamental parameters. Across all use categories, when measures of TIME and ANIMALS were compared, correlations between measures were greater than 0.91. However, when measures of AMOUNT were compared to either measures of TIME or ANIMALS, the correlation between measures was more variable across use categories (R = 0.31-0.91). These comparisons demonstrate that the selection of antimicrobial use metric can affect which dairies are considered the highest users of antimicrobials. Measurement selection also influences which use category has the greatest potential for use reduction. This indicates that measure selection can influence which use category is prioritized as a target for reduction of antimicrobial use. Utilization of this information may allow those developing dairy antimicrobial stewardship programmes to better understand the potential effects of measurement selection on driving changes in antimicrobial use.
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Affiliation(s)
- Nora F D Schrag
- College of Veterinary Medicine, Department of Clinical Sciences, Kansas State University, Manhattan, KS, USA
| | - Michael D Apley
- College of Veterinary Medicine, Department of Clinical Sciences, Kansas State University, Manhattan, KS, USA
| | - Sandra M Godden
- Department of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN, USA
| | - Randall S Singer
- Department of Veterinary and Biomedical Sciences, University of Minnesota, Saint Paul, MN, USA.,Mindwalk Consulting Group, MN, USA
| | - Brian V Lubbers
- College of Veterinary Medicine, Department of Clinical Sciences, Kansas State University, Manhattan, KS, USA
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17
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Schrag NFD, Apley MD, Godden SM, Lubbers BV, Singer RS. Antimicrobial use quantification in adult dairy cows - Part 1 - Standardized regimens as a method for describing antimicrobial use. Zoonoses Public Health 2021; 67 Suppl 1:51-68. [PMID: 33201607 DOI: 10.1111/zph.12766] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Revised: 06/30/2020] [Accepted: 08/03/2020] [Indexed: 12/23/2022]
Abstract
This study describes a process to acquire and convert farm treatment records into a standardized regimen format. Multiple sources of on-farm data were utilized to convert the original treatment records to standardized regimens, enabling the generation of objective, granular descriptions of antimicrobial use. These standard regimen descriptions allow antimicrobial use data to be qualitatively stratified by active substance, disease syndrome treated, use category, and route of administration. Quantitative distributions are available for the grams of active substance per administration, the grams of active substance per regimen, the number of administrations, number of days of therapy and the time frame between the first and last administration. Granular quantification by this method informs future research, surveillance and policy.
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Affiliation(s)
- Nora F D Schrag
- College of Veterinary Medicine, Department of Clinical Sciences, Kansas State University, Manhattan, KS, USA
| | - Michael D Apley
- College of Veterinary Medicine, Department of Clinical Sciences, Kansas State University, Manhattan, KS, USA
| | - Sandra M Godden
- Department of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN, USA
| | - Brian V Lubbers
- College of Veterinary Medicine, Department of Clinical Sciences, Kansas State University, Manhattan, KS, USA
| | - Randall S Singer
- Department of Veterinary and Biomedical Sciences, University of Minnesota, Saint Paul, MN, USA.,Mindwalk Consulting Group, MN, USA
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18
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Chitko-McKown CG, Bennett GL, Kuehn LA, DeDonder KD, Apley MD, Harhay GP, Clawson ML, Workman AM, White BJ, Larson RL, Capik SF, Lubbers BV. Cytokine and Haptoglobin Profiles From Shipping Through Sickness and Recovery in Metaphylaxis- or Un-Treated Cattle. Front Vet Sci 2021; 8:611927. [PMID: 33816585 PMCID: PMC8017278 DOI: 10.3389/fvets.2021.611927] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Accepted: 02/05/2021] [Indexed: 12/02/2022] Open
Abstract
Fifty-six head of cattle, 28 animals with bovine respiratory disease complex (BRDC), and 28 healthy animals that were matched by treatment, sale barn of origin, day, and interactions among these variables, were identified from a population of 180 animals (60 each purchased at three sale barns located in Missouri, Tennessee, and Kentucky) enrolled in a study comparing animals receiving metaphylaxis to saline-treated controls. Cattle were transported to a feedlot in KS and assigned to treatment group. Blood samples were collected at Day 0 (at sale barn), Day 1, Day 9, and Day 28 (at KS feedlot), and transported to the US Meat Animal Research Center in Clay Center, NE where plasma was harvested and stored at −80°C until assayed for the cytokines IFN-γ, IL-1β, IL-6, and TNF-α, and the acute stress protein haptoglobin (HPT). Our objectives were to determine if cytokine and haptoglobin profiles differed between control and metaphylaxis treatment groups over time, and if profiles differed between animals presenting with BRDC and those that remained healthy. There was no difference between the treated animals and their non-treated counterparts for any of the analytes measured. Sale barn of origin tended to affect TNF-α concentration. Differences for all analytes changed over days, and on specific days was associated with state of origin and treatment. The Treatment by Day by Case interaction was significant for HPT. The analyte most associated with BRDC was HPT on D9, possibly indicating that many of the cattle were not exposed to respiratory pathogens prior to entering the feedlot.
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Affiliation(s)
| | - Gary L Bennett
- USDA-ARS, US Meat Animal Research Center, Clay Center, NE, United States
| | - Larry A Kuehn
- USDA-ARS, US Meat Animal Research Center, Clay Center, NE, United States
| | - Keith D DeDonder
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, United States
| | - Michael D Apley
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, United States
| | - Gregory P Harhay
- USDA-ARS, US Meat Animal Research Center, Clay Center, NE, United States
| | - Michael L Clawson
- USDA-ARS, US Meat Animal Research Center, Clay Center, NE, United States
| | - Aspen M Workman
- USDA-ARS, US Meat Animal Research Center, Clay Center, NE, United States
| | - Bradley J White
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, United States
| | - Robert L Larson
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, United States
| | - Sarah F Capik
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, United States
| | - Brian V Lubbers
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, United States
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19
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Clawson ML, Schuller G, Dickey AM, Bono JL, Murray RW, Sweeney MT, Apley MD, DeDonder KD, Capik SF, Larson RL, Lubbers BV, White BJ, Blom J, Chitko-McKown CG, Brichta-Harhay DM, Smith TPL. Differences between predicted outer membrane proteins of genotype 1 and 2 Mannheimia haemolytica. BMC Microbiol 2020; 20:250. [PMID: 32787780 PMCID: PMC7424683 DOI: 10.1186/s12866-020-01932-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2019] [Accepted: 07/29/2020] [Indexed: 12/18/2022] Open
Abstract
BACKGROUND Mannheimia haemolytica strains isolated from North American cattle have been classified into two genotypes (1 and 2). Although members of both genotypes have been isolated from the upper and lower respiratory tracts of cattle with or without bovine respiratory disease (BRD), genotype 2 strains are much more frequently isolated from diseased lungs than genotype 1 strains. The mechanisms behind the increased association of genotype 2 M. haemolytica with BRD are not fully understood. To address that, and to search for interventions against genotype 2 M. haemolytica, complete, closed chromosome assemblies for 35 genotype 1 and 34 genotype 2 strains were generated and compared. Searches were conducted for the pan genome, core genes shared between the genotypes, and for genes specific to either genotype. Additionally, genes encoding outer membrane proteins (OMPs) specific to genotype 2 M. haemolytica were identified, and the diversity of their protein isoforms was characterized with predominantly unassembled, short-read genomic sequences for up to 1075 additional strains. RESULTS The pan genome of the 69 sequenced M. haemolytica strains consisted of 3111 genes, of which 1880 comprised a shared core between the genotypes. A core of 112 and 179 genes or gene variants were specific to genotype 1 and 2, respectively. Seven genes encoding predicted OMPs; a peptidase S6, a ligand-gated channel, an autotransporter outer membrane beta-barrel domain-containing protein (AOMB-BD-CP), a porin, and three different trimeric autotransporter adhesins were specific to genotype 2 as their genotype 1 homologs were either pseudogenes, or not detected. The AOMB-BD-CP gene, however, appeared to be truncated across all examined genotype 2 strains and to likely encode dysfunctional protein. Homologous gene sequences from additional M. haemolytica strains confirmed the specificity of the remaining six genotype 2 OMP genes and revealed they encoded low isoform diversity at the population level. CONCLUSION Genotype 2 M. haemolytica possess genes encoding conserved OMPs not found intact in more commensally prone genotype 1 strains. Some of the genotype 2 specific genes identified in this study are likely to have important biological roles in the pathogenicity of genotype 2 M. haemolytica, which is the primary bacterial cause of BRD.
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Affiliation(s)
- Michael L Clawson
- United States Department of Agriculture, Genetics, Breeding, and Animal Health Research Unit, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE, USA.
| | - Gennie Schuller
- United States Department of Agriculture, Genetics, Breeding, and Animal Health Research Unit, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE, USA
| | - Aaron M Dickey
- United States Department of Agriculture, Genetics, Breeding, and Animal Health Research Unit, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE, USA
| | - James L Bono
- United States Department of Agriculture, Genetics, Breeding, and Animal Health Research Unit, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE, USA
| | | | | | | | - Keith D DeDonder
- Veterinary and Biomedical Research Center, Inc, Manhattan, KS, USA
| | - Sarah F Capik
- Texas A&M AgriLife Research, Texas A&M University System, Amarillo, TX, USA
- Department of Veterinary Pathobiology, Texas A&M College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, USA
| | | | | | | | - Jochen Blom
- Justus-Liebig-University Giessen, Giessen, Hesse, Germany
| | - Carol G Chitko-McKown
- United States Department of Agriculture, Genetics, Breeding, and Animal Health Research Unit, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE, USA
| | - Dayna M Brichta-Harhay
- United States Department of Agriculture, Genetics, Breeding, and Animal Health Research Unit, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE, USA
| | - Timothy P L Smith
- United States Department of Agriculture, Genetics, Breeding, and Animal Health Research Unit, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE, USA
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20
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Myer PR, McDaneld TG, Kuehn LA, Dedonder KD, Apley MD, Capik SF, Lubbers BV, Harhay GP, Harhay DM, Keele JW, Henniger MT, Clemmons BA, Smith TPL. Classification of 16S rRNA reads is improved using a niche-specific database constructed by near-full length sequencing. PLoS One 2020; 15:e0235498. [PMID: 32658916 PMCID: PMC7357769 DOI: 10.1371/journal.pone.0235498] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Accepted: 06/17/2020] [Indexed: 12/21/2022] Open
Abstract
Surveys of microbial populations in environmental niches of interest often utilize sequence variation in the gene encoding the ribosomal small subunit (the 16S rRNA gene). Generally, these surveys target the 16S genes using semi-degenerate primers to amplify portions of a subset of bacterial species, sequence the amplicons in bulk, and assign to putative taxonomic categories by comparison to databases purporting to connect specific sequences in the main variable regions of the gene to specific organisms. Due to sequence length constraints of the most popular bulk sequencing platforms, the primers selected amplify one to three of the nine variable regions, and taxonomic assignment is based on relatively short stretches of sequence (150-500 bases). We demonstrate that taxonomic assignment is improved through reduced unassigned reads by including a survey of near-full-length sequences specific to the target environment, using a niche of interest represented by the upper respiratory tract (URT) of cattle. We created a custom Bovine URT database from these longer sequences for assignment of shorter, less expensive reads in comparisons of the upper respiratory tract among individual animals. This process improves the ability to detect changes in the microbial populations of a given environment, and the accuracy of defining the content of that environment at increasingly higher taxonomic resolution.
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Affiliation(s)
- Phillip R. Myer
- Department of Animal Science, University of Tennessee Institute of Agriculture, University of Tennessee, Knoxville, TN, United States of America
| | - Tara G. McDaneld
- USDA-ARS, U.S. Meat Animal Research Center, Clay Center, NE, United States of America
| | - Larry A. Kuehn
- USDA-ARS, U.S. Meat Animal Research Center, Clay Center, NE, United States of America
| | - Keith D. Dedonder
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, United States of America
| | - Michael D. Apley
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, United States of America
| | - Sarah F. Capik
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, United States of America
| | - Brian V. Lubbers
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, United States of America
| | - Gregory P. Harhay
- USDA-ARS, U.S. Meat Animal Research Center, Clay Center, NE, United States of America
| | - Dayna M. Harhay
- USDA-ARS, U.S. Meat Animal Research Center, Clay Center, NE, United States of America
| | - John W. Keele
- USDA-ARS, U.S. Meat Animal Research Center, Clay Center, NE, United States of America
| | - Madison T. Henniger
- Department of Animal Science, University of Tennessee Institute of Agriculture, University of Tennessee, Knoxville, TN, United States of America
| | - Brooke A. Clemmons
- Department of Animal Science, University of Tennessee Institute of Agriculture, University of Tennessee, Knoxville, TN, United States of America
| | - Timothy P. L. Smith
- USDA-ARS, U.S. Meat Animal Research Center, Clay Center, NE, United States of America
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Sweeney MT, Lubbers BV, Schwarz S, Watts JL. Applying definitions for multidrug resistance, extensive drug resistance and pandrug resistance to clinically significant livestock and companion animal bacterial pathogens-authors' response. J Antimicrob Chemother 2020; 74:536-537. [PMID: 30452632 DOI: 10.1093/jac/dky470] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Affiliation(s)
| | - Brian V Lubbers
- Department of Diagnostic Medicine/Pathobiology, Kansas State University, Manhattan, KS, USA
| | - Stefan Schwarz
- Institute of Microbiology and Epizootics, Freie Universität Berlin, Berlin, Germany
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22
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Capps KM, Amachawadi RG, Menegat MB, Woodworth JC, Perryman K, Tokach MD, Dritz SS, DeRouchey JM, Goodband RD, Bai J, Apley MD, Lubbers BV, Nagaraja TG. Impact of added copper, alone or in combination with chlortetracycline, on growth performance and antimicrobial resistance of fecal enterococci of weaned piglets. J Anim Sci 2020; 98:skaa003. [PMID: 31950170 PMCID: PMC7072034 DOI: 10.1093/jas/skaa003] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Accepted: 01/08/2020] [Indexed: 12/17/2022] Open
Abstract
Studies suggest a link between added copper (Cu) and co-selection of antimicrobial resistance (AMR) in Enterococcus spp., but data are inconsistent. This study aimed to assess the impact of added Cu, alone or with a feed-grade antimicrobial, on growth performance, transferable Cu resistance gene (tcrB) prevalence, abundance of tcrB in fecal community DNA, and AMR in fecal enterococci in weaned piglets. A total of 320 barrows (DNA 200 × 400, DNA Genetics) weaned at approximately 21 d of age with 7.4 kg (7.4 ± 0.06 kg) BW were used in a 28-d study. Piglets were fed a common non-medicated diet for 7 d of acclimation. Treatments were arranged in a 2 × 2 factorial design with main effects of added Cu (0 vs. 200 mg/kg Cu from Cu sulfate) and chlortetracycline (0 vs. 440 mg/kg CTC). Growth performance and fecal samples were obtained on days 0, 14, and 28. There was no evidence (P > 0.05) for Cu and CTC interaction in growth performance. Pigs fed diets with added Cu had increased (P < 0.05) ADG and ADFI from days 0 to 14, with no evidence for differences (P > 0.05) from days 15 to 28 and 0 to 28. Pigs fed diets with CTC had improved (P < 0.01) ADG, ADFI, and G:F from days 0 to 28. Prevalence of tcrB-positive enterococci was not affected by the addition of Cu and/or CTC (P > 0.05). Prevalence of tcrB-positive enterococci was higher on day 14 than other sampling days (P = 0.002). Prevalence of tetracycline resistance gene [tet(M)]-positive enterococci was not affected by treatments or day (P > 0.05). Prevalence of macrolide resistance gene [erm(B)]-positive enterococci had a significant treatment and sampling day interaction (P = 0.021). The abundance of the tcrB gene in feces, quantified by PCR, was not affected by Cu treatment. The median Cu minimum inhibitory concentrations (MIC) of tcrB-negative and -positive isolates were 3 and 20 mM, respectively (P < 0.001). For day 0 and day 28, all Enterococcus isolates were susceptible to gentamicin, kanamycin, streptomycin, daptomycin, and tigecycline, with a majority of isolates resistant to chloramphenicol, erythromycin, lincomycin, linezolid, tetracycline, tylosin tartrate, and Synercid. In conclusion, 200 mg/kg added Cu or 440 mg/kg CTC in nursery diets improved growth performance of nursery pigs. Added Cu, with or without a selection pressure of CTC, did not increase Cu-resistant enterococci and did not co-select resistance to antibiotics.
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Affiliation(s)
- Kaylen M Capps
- Department of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS
| | - Raghavendra G Amachawadi
- Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, KS
| | - Mariana B Menegat
- Department of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS
| | - Jason C Woodworth
- Department of Animal Sciences and Industry, College of Agriculture, Kansas State University, Manhattan, KS
| | | | - Mike D Tokach
- Department of Animal Sciences and Industry, College of Agriculture, Kansas State University, Manhattan, KS
| | - Steve S Dritz
- Department of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS
| | - Joel M DeRouchey
- Department of Animal Sciences and Industry, College of Agriculture, Kansas State University, Manhattan, KS
| | - Robert D Goodband
- Department of Animal Sciences and Industry, College of Agriculture, Kansas State University, Manhattan, KS
| | - Jianfa Bai
- Department of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS
| | - Mike D Apley
- Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, KS
| | - Brian V Lubbers
- Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, KS
| | - Tiruvoor G Nagaraja
- Department of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS
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23
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Watts JL, Sweeney MT, Lubbers BV. Current and future perspectives on the categorization of antimicrobials used in veterinary medicine. J Vet Pharmacol Ther 2020; 44:207-214. [PMID: 32112438 DOI: 10.1111/jvp.12846] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Revised: 01/10/2020] [Accepted: 01/15/2020] [Indexed: 11/29/2022]
Abstract
The emergence of antimicrobial resistance in human and veterinary bacterial pathogens has led to concerns regarding the use of antimicrobials in veterinary medicine. Consequently, regulatory agencies have developed procedures for assessing the risk associated with the use of a specific antimicrobial as part of the drug approval process. Due consideration for the importance (priority categorization) of the antimicrobial to human medicine is part of this risk assessment process. Additionally, nongovernmental organizations have developed antimicrobial categorization schemes to protect the use and effectiveness of these medicines. However, the goals and methods of the various categorization schemes vary, resulting in final categorizations that are different. Although harmonizing these schemes would bring clarity to antimicrobial resistance discussions and policy, it has the disadvantage of not accounting for regional antimicrobial resistance and use, potentially removing effective medicines from clinical use in situations where they are wholly appropriate. Antimicrobials should be classified in a One Health manner, where both physician and veterinarian share the responsibility for antimicrobial use. The purpose of this article is to summarize current antimicrobial categorization schemes using illustrative examples to highlight differences and provide perspectives on the impact of the current schemes and future directions.
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Affiliation(s)
- Jeffrey L Watts
- Veterinary Medicine Research and Development, Zoetis, Inc., Kalamazoo, MI, USA
| | - Michael T Sweeney
- Veterinary Medicine Research and Development, Zoetis, Inc., Kalamazoo, MI, USA
| | - Brian V Lubbers
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, USA
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24
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Harhay GP, Harhay DM, Bono JL, Capik SF, DeDonder KD, Apley MD, Lubbers BV, White BJ, Larson RL, Smith TPL. A Computational Method to Quantify the Effects of Slipped Strand Mispairing on Bacterial Tetranucleotide Repeats. Sci Rep 2019; 9:18087. [PMID: 31792233 PMCID: PMC6889271 DOI: 10.1038/s41598-019-53866-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2019] [Accepted: 11/04/2019] [Indexed: 01/17/2023] Open
Abstract
The virulence and pathogenicity of bacterial pathogens are related to their adaptability to changing environments. One process enabling adaptation is based on minor changes in genome sequence, as small as a few base pairs, within segments of genome called simple sequence repeats (SSRs) that consist of multiple copies of a short sequence (from one to several nucleotides), repeated in series. SSRs are found in eukaryotes as well as prokaryotes, and length variation in them occurs at frequencies up to a million-fold higher than bacterial point mutations through the process of slipped strand mispairing (SSM) by DNA polymerase during replication. The characterization of SSR length by standard sequencing methods is complicated by the appearance of length variation introduced during the sequencing process that obscures the lower abundance repeat number variants in a population. Here we report a computational approach to correct for sequencing process-induced artifacts, validated for tetranucleotide repeats by use of synthetic constructs of fixed, known length. We apply this method to a laboratory culture of Histophilus somni, prepared from a single colony, and demonstrate that the culture consists of populations of distinct sequence phase and length variants at individual tetranucleotide SSR loci.
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Affiliation(s)
- Gregory P Harhay
- USDA ARS US Meat Animal Research Center, Clay Center, NE, United States.
| | - Dayna M Harhay
- USDA ARS US Meat Animal Research Center, Clay Center, NE, United States
| | - James L Bono
- USDA ARS US Meat Animal Research Center, Clay Center, NE, United States
| | - Sarah F Capik
- Texas A&M AgriLife Research, Amarillo, TX and the College of Veterinary Medicine & Biomedical Sciences, Texas A&M University System, College Station, TX, United States
| | - Keith D DeDonder
- Veterinary and Biomedical Research Center, Inc, Manhattan, KS, United States
| | - Michael D Apley
- Kansas State University, College of Veterinary Medicine, Manhattan, KS, United States
| | - Brian V Lubbers
- Kansas State University, College of Veterinary Medicine, Manhattan, KS, United States
| | - Bradley J White
- Kansas State University, College of Veterinary Medicine, Manhattan, KS, United States
| | - Robert L Larson
- Kansas State University, College of Veterinary Medicine, Manhattan, KS, United States
| | - Timothy P L Smith
- USDA ARS US Meat Animal Research Center, Clay Center, NE, United States
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25
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Sweeney MT, Lubbers BV, Schwarz S, Watts JL. Applying definitions for multidrug resistance, extensive drug resistance and pandrug resistance to clinically significant livestock and companion animal bacterial pathogens. J Antimicrob Chemother 2019; 73:1460-1463. [PMID: 29481657 DOI: 10.1093/jac/dky043] [Citation(s) in RCA: 144] [Impact Index Per Article: 28.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Standardized definitions for MDR are currently not available in veterinary medicine despite numerous reports indicating that antimicrobial resistance may be increasing among clinically significant bacteria in livestock and companion animals. As such, assessments of MDR presented in veterinary scientific reports are inconsistent. Herein, we apply previously standardized definitions for MDR, XDR and pandrug resistance (PDR) used in human medicine to animal pathogens and veterinary antimicrobial agents in which MDR is defined as an isolate that is not susceptible to at least one agent in at least three antimicrobial classes, XDR is defined as an isolate that is not susceptible to at least one agent in all but one or two available classes and PDR is defined as an isolate that is not susceptible to all agents in all available classes. These definitions may be applied to antimicrobial agents used to treat bovine respiratory disease (BRD) caused by Mannheimia haemolytica, Pasteurella multocida and Histophilus somni and swine respiratory disease (SRD) caused by Actinobacillus pleuropneumoniae, P. multocida and Streptococcus suis, as well as antimicrobial agents used to treat canine skin and soft tissue infections (SSTIs) caused by Staphylococcus and Streptococcus species. Application of these definitions in veterinary medicine should be considered static, whereas the classification of a particular resistance phenotype as MDR, XDR or PDR could change over time as more veterinary-specific clinical breakpoints or antimicrobial classes and/or agents become available in the future.
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Affiliation(s)
| | - Brian V Lubbers
- Department of Diagnostic Medicine/Pathobiology, Kansas State University, Manhattan, KS, USA
| | - Stefan Schwarz
- Institute of Microbiology and Epizootics, Freie Universität Berlin, Berlin, Germany
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26
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Younkin JT, Santschi EM, Kukanich B, Lubbers BV, Warner M. Evaluation of plasma concentration after intravenous and intramuscular penicillin administration over 24 hr in healthy adult horses. J Vet Pharmacol Ther 2018; 42:239-242. [DOI: 10.1111/jvp.12730] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2018] [Revised: 09/04/2018] [Accepted: 09/05/2018] [Indexed: 11/27/2022]
Affiliation(s)
- Jarrod T. Younkin
- Department of Clinical Sciences; Kansas State University; Manhattan Kansas
| | | | - Butch Kukanich
- Department of Anatomy and Physiology; Institute of Comparative Computational Medicine; Kansas State University; Manhattan Kansas
| | - Brian V. Lubbers
- Kansas State Veterinary Diagnostic Laboratory; Kansas State University; Manhattan Kansas
| | - Matthew Warner
- Department of Anatomy and Physiology; Institute of Comparative Computational Medicine; Kansas State University; Manhattan Kansas
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27
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Amachawadi RG, Purvis TJ, Lubbers BV, Homm JW, Maxwell CL, Nagaraja TG. Bacterial flora of liver abscesses in crossbred beef cattle and Holstein steers fed finishing diets with or without tylosin. J Anim Sci 2018; 95:3425-3434. [PMID: 28805921 DOI: 10.2527/jas.2016.1198] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Holstein steers raised for beef production consistently have a higher prevalence and more severe form of liver abscesses than cattle of beef breeds. A study was conducted to compare bacterial flora of liver abscesses collected from multiple abattoirs from 4 groups of cattle, arranged in a 2 × 2 factorial design, consisting of crossbred cattle and Holstein steers, and each group fed a finishing diet supplemented with or without tylosin. A total of 383 liver abscess samples, consisting of 94 and 81 from crossbred cattle and 89 and 119 from Holstein steers fed finishing diets with or without tylosin, respectively, were subjected for anaerobic and aerobic bacterial isolations. The minimum inhibitory concentrations (MIC) of tylosin to the predominant bacterial species were determined. The likelihood chi-square test was performed to assess unadjusted differences in bacterial prevalence proportions between the 2 types of cattle (crossbred and Holstein steers) and feed type (tylosin or no tylosin). There was no interaction between cattle type and tylosin inclusion on the prevalence of any of the bacterial species isolated. Liver abscesses from Holstein steers yielded a higher total number of isolates compared to liver abscesses from crossbred cattle (1060 vs. 788). subsp. was isolated from all abscesses. The prevalence of subsp. was 19.1% and was not affected by the cattle type or tylosin. The prevalence of was higher ( < 0.01) in crossbred cattle (73.7%) compared to Holstein steers (29.8%). Also, the prevalence of was higher in abscesses from tylosin-fed (66.1%) cattle than no tylosin-fed cattle (35%). The overall prevalence of was 25.3% and was similar ( = 0.58) between cattle type, but the prevalence was lower ( < 0.01) in tylosin-fed (16.9%) compared to no tylosin-fed group (33%). Mean MIC of tylosin for and were similar across both cattle types and tylosin inclusion. Although bacterial flora of liver abscesses from Holstein steers appeared to be more diverse than that of crossbred cattle, there was no difference in the prevalence of the and and in fact, prevalence of was higher in crossbred than Holstein steers. Therefore, the difference in bacterial flora is not the likely reason for higher prevalence and severity of liver abscesses in Holstein steers than crossbred beef cattle.
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28
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Capik SF, White BJ, Lubbers BV, Apley MD, DeDonder KD, Larson RL, Harhay GP, Chitko-McKown CG, Harhay DM, Kalbfleisch TS, Schuller G, Clawson ML. Comparison of the diagnostic performance of bacterial culture of nasopharyngeal swab and bronchoalveolar lavage fluid samples obtained from calves with bovine respiratory disease. Am J Vet Res 2017; 78:350-358. [DOI: 10.2460/ajvr.78.3.350] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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29
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Clawson ML, Murray RW, Sweeney MT, Apley MD, DeDonder KD, Capik SF, Larson RL, Lubbers BV, White BJ, Kalbfleisch TS, Schuller G, Dickey AM, Harhay GP, Heaton MP, Chitko-McKown CG, Brichta-Harhay DM, Bono JL, Smith TPL. Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes. BMC Genomics 2016; 17:982. [PMID: 27894259 PMCID: PMC5127058 DOI: 10.1186/s12864-016-3316-8] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2016] [Accepted: 11/18/2016] [Indexed: 11/30/2022] Open
Abstract
BACKGROUND Mannheimia haemolytica typically resides in cattle as a commensal member of the upper respiratory tract microbiome. However, some strains can invade their lungs and cause respiratory disease and death, including those with multi-drug resistance. A nucleotide polymorphism typing system was developed for M. haemolytica from the genome sequences of 1133 North American isolates, and used to identify genetic differences between isolates from the lungs and upper respiratory tract of cattle with and without clinical signs of respiratory disease. RESULTS A total of 26,081 nucleotide polymorphisms were characterized after quality control filtering of 48,403 putative polymorphisms. Phylogenetic analyses of nucleotide polymorphism genotypes split M. haemolytica into two major genotypes (1 and 2) that each were further divided into multiple subtypes. Multiple polymorphisms were identified with alleles that tagged genotypes 1 or 2, and their respective subtypes. Only genotype 2 M. haemolytica associated with the lungs of diseased cattle and the sequence of a particular integrative and conjugative element (ICE). Additionally, isolates belonging to one subtype of genotype 2 (2b), had the majority of antibiotic resistance genes detected in this study, which were assorted into seven combinations that ranged from 1 to 12 resistance genes. CONCLUSIONS Typing of diverse M. haemolytica by nucleotide polymorphism genotypes successfully identified associations with diseased cattle lungs, ICE sequence, and antibiotic resistance genes. Management of cattle by their carriage of M. haemolytica could be an effective intervention strategy to reduce the prevalence of respiratory disease and supplemental needs for antibiotic treatments in North American herds.
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Affiliation(s)
- Michael L. Clawson
- United States Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE USA
| | | | | | | | - Keith D. DeDonder
- Kansas State University, Manhattan, KS USA
- Veterinary and Biomedical Research Center, Inc, Manhattan, KS USA
| | | | | | | | | | | | - Gennie Schuller
- United States Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE USA
| | - Aaron M. Dickey
- United States Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE USA
| | - Gregory P. Harhay
- United States Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE USA
| | - Michael P. Heaton
- United States Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE USA
| | - Carol G. Chitko-McKown
- United States Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE USA
| | - Dayna M. Brichta-Harhay
- United States Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE USA
| | - James L. Bono
- United States Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE USA
| | - Timothy P. L. Smith
- United States Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE USA
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30
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Abstract
Canine and feline urine culture reports and medical records were reviewed at a veterinary teaching hospital from 2006 to 2011 for enterococcal growth, coinfections, antimicrobial resistance, urine sediment findings, clinical signs, and concurrent conditions. Of all of the urine specimens with significantly defined colony-forming units/mL, Enterococcus (E.) faecalis was the only enterococci isolated from cats and predominated (77.4%) in dogs followed by E. faecium (12.9%), E. durans (3.2%), and other Enterococcus spp. (6.5%). The majority of specimens with significant enterococcal growth resulted in complicated urinary tract infections in 83.9% of dogs and 81.8% of cats. Specimens with only enterococcal growth were more common than those mixed with other bacterial species. Cocci were observed in urine sediments of 8 out of 8 cats and 21 out of 25 dogs with available concurrent urinalyses. Pyuria was noted in 5 out of 8 feline and 15 out of 25 canine urine sediments, and pyuria in dogs was associated with growth of only enterococci on aerobic urine culture. Multidrug resistance was identified in 6 out of 11 cats and 7 out of 31 dogs, and E. faecium isolates from dogs were 4.5× more likely to be multidrug resistant than E. faecalis.
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Affiliation(s)
- Kate S KuKanich
- From the Department of Clinical Sciences (K.K.) and Kansas State Veterinary Diagnostic Laboratory (B.L.), College of Veterinary Medicine, Kansas State University, Manhattan, KS
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31
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DeDonder KD, Harhay DM, Apley MD, Lubbers BV, Clawson ML, Schuller G, Harhay GP, White BJ, Larson RL, Capik SF, Riviere JE, Kalbfleisch T, Tessman RK. Observations on macrolide resistance and susceptibility testing performance in field isolates collected from clinical bovine respiratory disease cases. Vet Microbiol 2016; 192:186-193. [PMID: 27527782 DOI: 10.1016/j.vetmic.2016.07.021] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2016] [Revised: 07/12/2016] [Accepted: 07/25/2016] [Indexed: 12/21/2022]
Abstract
The objectives of this study were; first, to describe gamithromycin susceptibility of Mannheimia haemolytica, Pasteurella multocida, and Histophilus somni isolated from cattle diagnosed with bovine respiratory disease (BRD) and previously treated with either gamithromycin for control of BRD (mass medication=MM) or sham-saline injected (control=CON); second, to describe the macrolide resistance genes present in genetically typed M. haemolytica isolates; third, use whole-genome sequencing (WGS) to correlate the phenotypic resistance and genetic determinants for resistance among M. haemolytica isolates. M. haemolytica (n=276), P. multocida (n=253), and H. somni (n=78) were isolated from feedlot cattle diagnosed with BRD. Gamithromycin susceptibility was determined by broth microdilution. Whole-genome sequencing was utilized to determine the presence/absence of macrolide resistance genes and to genetically type M. haemolytica. Generalized linear mixed models were built for analysis. There was not a significant difference between MM and CON groups in regards to the likelihood of culturing a resistant isolate of M. haemolytica or P. multocida. The likelihood of culturing a resistant isolate of M. haemolytica differed significantly by state of origin in this study. A single M. haemolytica genetic subtype was associated with an over whelming majority of the observed resistance. H. somni isolation counts were low and statistical models would not converge. Phenotypic resistance was predicted with high sensitivity and specificity by WGS. Additional studies to elucidate the relationships between phenotypic expression of resistance/genetic determinants for resistance and clinical response to antimicrobials are necessary to inform judicious use of antimicrobials in the context of relieving animal disease and suffering.
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Affiliation(s)
- Keith D DeDonder
- Diagnostic Medicine/Pathobiology, Kansas State University College of Veterinary Medicine, Manhattan, KS, United States.
| | - Dayna M Harhay
- USDA ARS US Meat Animal Research Center, Clay Center, NE, United States
| | - Michael D Apley
- Clinical Sciences, Kansas State University College of Veterinary Medicine, Manhattan, KS, United States
| | - Brian V Lubbers
- Kansas State Veterinary Diagnostic Laboratory, Kansas State University College of Veterinary Medicine, Manhattan, KS, United States
| | - Michael L Clawson
- USDA ARS US Meat Animal Research Center, Clay Center, NE, United States
| | - Gennie Schuller
- USDA ARS US Meat Animal Research Center, Clay Center, NE, United States
| | - Gregory P Harhay
- USDA ARS US Meat Animal Research Center, Clay Center, NE, United States
| | - Brad J White
- Clinical Sciences, Kansas State University College of Veterinary Medicine, Manhattan, KS, United States
| | - Robert L Larson
- Clinical Sciences, Kansas State University College of Veterinary Medicine, Manhattan, KS, United States
| | - Sarah F Capik
- Diagnostic Medicine/Pathobiology, Kansas State University College of Veterinary Medicine, Manhattan, KS, United States
| | - Jim E Riviere
- Institute of Computational Comparative Medicine, Kansas State University College of Veterinary Medicine, Manhattan, KS, United States
| | - Ted Kalbfleisch
- Biochemistry and Molecular Genetics Department, School of Medicine, University of Louisville, Louisville, KY, United States
| | - Ronald K Tessman
- Pharmaceutical Research and Development, Merial, Duluth, GA, United States
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32
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Dickey AM, Loy JD, Bono JL, Smith TPL, Apley MD, Lubbers BV, DeDonder KD, Capik SF, Larson RL, White BJ, Blom J, Chitko-McKown CG, Clawson ML. Large genomic differences between Moraxella bovoculi isolates acquired from the eyes of cattle with infectious bovine keratoconjunctivitis versus the deep nasopharynx of asymptomatic cattle. Vet Res 2016; 47:31. [PMID: 26872821 PMCID: PMC4752781 DOI: 10.1186/s13567-016-0316-2] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2015] [Accepted: 01/22/2016] [Indexed: 11/25/2022] Open
Abstract
Moraxella bovoculi is a recently described bacterium that is associated with infectious bovine keratoconjunctivitis (IBK) or “pinkeye” in cattle. In this study, closed circularized genomes were generated for seven M. bovoculi isolates: three that originated from the eyes of clinical IBK bovine cases and four from the deep nasopharynx of asymptomatic cattle. Isolates that originated from the eyes of IBK cases profoundly differed from those that originated from the nasopharynx of asymptomatic cattle in genome structure, gene content and polymorphism diversity and consequently placed into two distinct phylogenetic groups. These results suggest that there are genetically distinct strains of M. bovoculi that may not associate with IBK.
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Affiliation(s)
- Aaron M Dickey
- United States Department of Agriculture (USDA), Agricultural Research Service (ARS), U.S. Meat Animal Research Center (USMARC), State Spur 18D, Clay Center, NE, 68933, USA.
| | - John D Loy
- School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Lincoln, NE, 68583-0907, USA.
| | - James L Bono
- United States Department of Agriculture (USDA), Agricultural Research Service (ARS), U.S. Meat Animal Research Center (USMARC), State Spur 18D, Clay Center, NE, 68933, USA.
| | - Timothy P L Smith
- United States Department of Agriculture (USDA), Agricultural Research Service (ARS), U.S. Meat Animal Research Center (USMARC), State Spur 18D, Clay Center, NE, 68933, USA.
| | - Mike D Apley
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, 66506, USA.
| | - Brian V Lubbers
- Kansas State Diagnostic Laboratory, Kansas State University, Manhattan, KS, 66506, USA.
| | - Keith D DeDonder
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, 66506, USA.
| | - Sarah F Capik
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, 66506, USA.
| | - Robert L Larson
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, 66506, USA.
| | - Brad J White
- College of Veterinary Medicine, Kansas State University, Manhattan, KS, 66506, USA.
| | - Jochen Blom
- Bioinformatics and Systems Biology, Justus-Liebig-University Giessen, 35392, Giessen, Germany.
| | - Carol G Chitko-McKown
- United States Department of Agriculture (USDA), Agricultural Research Service (ARS), U.S. Meat Animal Research Center (USMARC), State Spur 18D, Clay Center, NE, 68933, USA.
| | - Michael L Clawson
- United States Department of Agriculture (USDA), Agricultural Research Service (ARS), U.S. Meat Animal Research Center (USMARC), State Spur 18D, Clay Center, NE, 68933, USA.
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33
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Rainbolt S, Pillai DK, Lubbers BV, Moore M, Davis R, Amrine D, Mosier D. Comparison of Mannheimia haemolytica isolates from an outbreak of bovine respiratory disease. Vet Microbiol 2015; 182:82-6. [PMID: 26711032 DOI: 10.1016/j.vetmic.2015.10.020] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2015] [Revised: 09/15/2015] [Accepted: 10/19/2015] [Indexed: 11/18/2022]
Abstract
The objective of this study was to determine the clonal relatedness of Mannheimia haemolytica isolates responsible for an outbreak of bovine respiratory disease in a commercial feedlot. The isolates were obtained from the lungs of 21 calves with fatal pneumonia that were part of a group of 206 total calves. All isolates were serotyped and analyzed by pulsed-field gel electrophoresis (PFGE) and for antibiotic sensitivity patterns. ELISA and immunoblotting assays were performed to compare serum antibody levels to M. haemolytica antigens in calves with fatal pneumonia to those calves that survived the outbreak. Isolates were categorized into 14 different PFGE groups based on 90% similarity. Two Group D isolates (1 and 6), and 3 Group H isolates (14, 15, and 16) were characterized as 100% similar. Antimicrobial susceptibility profiles defined 8 groups based on differences in patterns of resistance between isolates. The two 100% similar isolates from PFGE Group D were both in susceptibility Group 1. All but isolate 14 from PFGE Group H (3, 15, 16, and 19) were in susceptibility Group 4a. Serum antibody levels to M. haemolytica antigens in the dead calves were not different than the antibody levels in the 185 calves that survived the outbreak. Immunoblots of selected isolates from each of the PFGE groups demonstrated only minimal differences in antigenic profiles between strains when reacted with serum from calves that either died from or survived the outbreak. Based on the characteristics of these isolates, multiple strains of M. haemolytica were responsible for fatal pneumonia during this outbreak.
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Affiliation(s)
- S Rainbolt
- Department of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA
| | - D K Pillai
- Department of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA
| | - B V Lubbers
- Veterinary Diagnostic Laboratory, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506-5606 USA
| | - M Moore
- Veterinary Diagnostic Laboratory, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506-5606 USA
| | - R Davis
- Veterinary Diagnostic Laboratory, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506-5606 USA
| | - D Amrine
- Department of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA
| | - D Mosier
- Department of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA.
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Boysen C, Davis EG, Beard LA, Lubbers BV, Raghavan RK. Bayesian Geostatistical Analysis and Ecoclimatic Determinants of Corynebacterium pseudotuberculosis Infection among Horses. PLoS One 2015; 10:e0140666. [PMID: 26473728 PMCID: PMC4608828 DOI: 10.1371/journal.pone.0140666] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2015] [Accepted: 09/29/2015] [Indexed: 11/25/2022] Open
Abstract
Kansas witnessed an unprecedented outbreak in Corynebacterium pseudotuberculosis infection among horses, a disease commonly referred to as pigeon fever during fall 2012. Bayesian geostatistical models were developed to identify key environmental and climatic risk factors associated with C. pseudotuberculosis infection in horses. Positive infection status among horses (cases) was determined by positive test results for characteristic abscess formation, positive bacterial culture on purulent material obtained from a lanced abscess (n = 82), or positive serologic evidence of exposure to organism (≥1:512)(n = 11). Horses negative for these tests (n = 172)(controls) were considered free of infection. Information pertaining to horse demographics and stabled location were obtained through review of medical records and/or contact with horse owners via telephone. Covariate information for environmental and climatic determinants were obtained from USDA (soil attributes), USGS (land use/land cover), and NASA MODIS and NASA Prediction of Worldwide Renewable Resources (climate). Candidate covariates were screened using univariate regression models followed by Bayesian geostatistical models with and without covariates. The best performing model indicated a protective effect for higher soil moisture content (OR = 0.53, 95% CrI = 0.25, 0.71), and detrimental effects for higher land surface temperature (≥35°C) (OR = 2.81, 95% CrI = 2.21, 3.85) and habitat fragmentation (OR = 1.31, 95% CrI = 1.27, 2.22) for C. pseudotuberculosis infection status in horses, while age, gender and breed had no effect. Preventative and ecoclimatic significance of these findings are discussed.
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Affiliation(s)
- Courtney Boysen
- Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, Kansas, United States of America
| | - Elizabeth G. Davis
- Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, Kansas, United States of America
| | - Laurie A. Beard
- Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, Kansas, United States of America
| | - Brian V. Lubbers
- Kansas State Veterinary Diagnostic Laboratory, Department of Diagnostic Medicine and Pathobiology, Kansas State University, Manhattan, Kansas, United States of America
| | - Ram K. Raghavan
- Kansas State Veterinary Diagnostic Laboratory, Department of Diagnostic Medicine and Pathobiology, Kansas State University, Manhattan, Kansas, United States of America
- * E-mail:
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Capik SF, White BJ, Lubbers BV, Apley MD, Mosier DA, Larson RL, Murray RW. Characterization of Mannheimia haemolytica in beef calves via nasopharyngeal culture and pulsed-field gel electrophoresis. J Vet Diagn Invest 2015; 27:568-75. [PMID: 26330399 DOI: 10.1177/1040638715597724] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Mannheimia haemolytica is a major bacterial component of bovine respiratory disease (BRD); unfortunately, very little is known about M. haemolytica transmission dynamics among cattle. Identifying potential variation in M. haemolytica populations over time and induction of nasopharyngeal colonization and subsequent shedding are 2 areas where knowledge is lacking. In our study, 2 separate loads of 20 mixed-origin, male calves were purchased through an order buyer on different dates. Deep nasopharyngeal cultures (NPC) were performed on all calves on arrival and, if M. haemolytica-negative, a second screening culture was obtained. Calves that were negative on 2 initial NPCs (NEG; n = 4) were subsequently challenged with a previously isolated field strain of M. haemolytica in both the upper and lower respiratory tract, individually housed, and then monitored for M. haemolytica shedding via NPCs at 0.5, 1, 3, 5, 7, and 9 days postchallenge. Naturally M. haemolytica-positive calves (2 per load) were kept for additional daily cultures (POS; n = 4). Individual calf M. haemolytica status for both the POS and NEG groups was inconsistent between study days. Additionally, pulsed-field gel electrophoresis performed on isolates from the positive cultures showed that the NEG calves did not shed the M. haemolytica challenge strain, but rather 2 distinct clusters of M. haemolytica were shared among POS and NEG calves regardless of their initial status. Although sample sizes were small, these findings illustrate how variable the results of a single nasopharyngeal swab can be and the challenges of using an individual culture to truly represent animal M. haemolytica status.
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Affiliation(s)
- Sarah F Capik
- Departments of Clinical Sciences (White, Apley, Larson)Diagnostic Medicine and Pathology (Capik, Mosier), Kansas State University, Manhattan, KSKansas State Veterinary Diagnostic Laboratory (Lubbers), Kansas State University, Manhattan, KSZoetis, Kalamazoo, MI (Murray)
| | - Brad J White
- Departments of Clinical Sciences (White, Apley, Larson)Diagnostic Medicine and Pathology (Capik, Mosier), Kansas State University, Manhattan, KSKansas State Veterinary Diagnostic Laboratory (Lubbers), Kansas State University, Manhattan, KSZoetis, Kalamazoo, MI (Murray)
| | - Brian V Lubbers
- Departments of Clinical Sciences (White, Apley, Larson)Diagnostic Medicine and Pathology (Capik, Mosier), Kansas State University, Manhattan, KSKansas State Veterinary Diagnostic Laboratory (Lubbers), Kansas State University, Manhattan, KSZoetis, Kalamazoo, MI (Murray)
| | - Michael D Apley
- Departments of Clinical Sciences (White, Apley, Larson)Diagnostic Medicine and Pathology (Capik, Mosier), Kansas State University, Manhattan, KSKansas State Veterinary Diagnostic Laboratory (Lubbers), Kansas State University, Manhattan, KSZoetis, Kalamazoo, MI (Murray)
| | - Derek A Mosier
- Departments of Clinical Sciences (White, Apley, Larson)Diagnostic Medicine and Pathology (Capik, Mosier), Kansas State University, Manhattan, KSKansas State Veterinary Diagnostic Laboratory (Lubbers), Kansas State University, Manhattan, KSZoetis, Kalamazoo, MI (Murray)
| | - Robert L Larson
- Departments of Clinical Sciences (White, Apley, Larson)Diagnostic Medicine and Pathology (Capik, Mosier), Kansas State University, Manhattan, KSKansas State Veterinary Diagnostic Laboratory (Lubbers), Kansas State University, Manhattan, KSZoetis, Kalamazoo, MI (Murray)
| | - Robert W Murray
- Departments of Clinical Sciences (White, Apley, Larson)Diagnostic Medicine and Pathology (Capik, Mosier), Kansas State University, Manhattan, KSKansas State Veterinary Diagnostic Laboratory (Lubbers), Kansas State University, Manhattan, KSZoetis, Kalamazoo, MI (Murray)
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Lubbers BV, Turnidge J. Antimicrobial susceptibility testing for bovine respiratory disease: Getting more from diagnostic results. Vet J 2015; 203:149-54. [DOI: 10.1016/j.tvjl.2014.12.009] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2014] [Revised: 09/25/2014] [Accepted: 12/09/2014] [Indexed: 12/23/2022]
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Lubbers BV, Hanzlicek GA. Antimicrobial multidrug resistance and coresistance patterns of Mannheimia haemolytica isolated from bovine respiratory disease cases--a three-year (2009-2011) retrospective analysis. J Vet Diagn Invest 2013; 25:413-7. [PMID: 23572456 DOI: 10.1177/1040638713485227] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Bovine respiratory disease continues to be the most important ailment of feed yard cattle. While the disease is multifactorial in nature, therapy continues to target the primary bacterial pathogens, Mannheimia haemolytica, Pasteurella multocida, and Histophilus somni. A survey of records from a single diagnostic laboratory was conducted to evaluate the percentage of M. haemolytica isolates that were resistant to multiple antimicrobials and if coresistance patterns could be detected. All susceptibility test results for M. haemolytica recovered from lung tissues of cattle were eligible for inclusion in the survey. There were no isolates over the course of the analysis that were resistant to all 6 antimicrobials, primarily due to a lack of resistance to ceftiofur. In 2009, just over 5% of isolates were resistant to 5 or more antimicrobials (pan-resistant). In 2011, more than 35% of the M. haemolytica isolates were characterized as pan-resistant. Significant antimicrobial coresistance patterns were only seen with oxytetracycline and tilmicosin; bacterial isolates that were resistant to either oxytetracycline or tilmicosin were more likely to be resistant to at least one other antimicrobial. The mechanisms by which M. haemolytica is developing multidrug resistance warrant investigation if antimicrobial utility in the therapy of bovine respiratory disease is to be preserved.
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Affiliation(s)
- Brian V Lubbers
- Kansas State Veterinary Diagnostic Laboratory, 1800 Denison Avenue, Manhattan, KS 66506, USA.
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Dargatz DA, Bai J, Lubbers BV, Kopral CA, An B, Anderson GA. Prevalence of Escherichia coli O-types and Shiga toxin genes in fecal samples from feedlot cattle. Foodborne Pathog Dis 2013; 10:392-6. [PMID: 23458025 DOI: 10.1089/fpd.2012.1289] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
While efforts to control foodborne illness associated with the Shiga toxin-producing Escherichia coli (E. coli) O157 through processes and procedures implemented at harvest facilities have been very successful, there is concern about the burden of illness associated with other Shiga toxin-producing E. coli. The U.S. Department of Agriculture Food Safety and Inspection Service announced plans to classify an additional six non-O157 Shiga toxin-producing E. coli as adulterants. Little is known about the prevalence and distribution of these E. coli in the animal production environment. An investigation of the prevalence of O157 and the six major non-O157 E. coli serogroups was conducted in 21 feedlots over the period July 2011 to October 2011. Individual fecal swabs were collected from cattle approximately 60 days after their arrival in the feedlot and were pooled for evaluation using a polymerase chain reaction assay to identify the presence of seven E. coli O-types (O157, O45, O103, O121, O145, O26, and O111) and four virulence genes (stx1, stx2, eaeA, and ehxA). Overall, 1145 fecal pools were evaluated, with 506 (44.2%) being positive for one or more of the E. coli O-serogroups. The pool prevalences for E. coli O157, O45, O26, O103, O121, O145, and O111 were 19.7%, 13.8%, 9.9%, 9.3%, 5.5%, 1.1%, and 0.5%, respectively. Nearly all pools were positive for ehxA (99.7%) or stx2 (98.6%). The pool level prevalence for stx1 and eae was 65.5% and 69.3%, respectively. Pools that were positive for one or more of the other E. coli O-serogroups were 1.37 times more likely to be positive for E. coli O157. Conversely, pools that were positive for E. coli O157 were 1.43 times more likely to be positive for at least one of the other E. coli O-serogroups evaluated. These data will be useful to understand the expected prevalence of potential Shiga toxin-producing E. coli in cattle feedlots.
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Affiliation(s)
- David A Dargatz
- United States Department of Agriculture, Animal and Plant Health Inspection Service-Veterinary Services, Centers for Epidemiology and Animal Health, Fort Collins, Colorado 80526, USA.
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Lubbers BV, Peterson GJ, Narayanan SK, Havel JA, Coetzee JF, Apley MD. Effects of two simulated oxytetracycline dosing regimens on horizontal transfer of antimicrobial resistance plasmids in an in vitro pharmacodynamic model. Am J Vet Res 2011; 72:877-83. [DOI: 10.2460/ajvr.72.7.877] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Coetzee JF, Lubbers BV, Toerber SE, Gehring R, Thomson DU, White BJ, Apley MD. Plasma concentrations of substance P and cortisol in beef calves after castration or simulated castration. Am J Vet Res 2008; 69:751-62. [DOI: 10.2460/ajvr.69.6.751] [Citation(s) in RCA: 88] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Lubbers BV, Apley MD, Coetzee JF, Mosier DA, Biller DS, Mason DE, Henao-Guerrero PN. Use of computed tomography to evaluate pathologic changes in the lungs of calves with experimentally induced respiratory tract disease. Am J Vet Res 2007; 68:1259-64. [DOI: 10.2460/ajvr.68.11.1259] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Coetzee JF, Gehring R, Bettenhausen AC, Lubbers BV, Toerber SE, Thomson DU, Kukanich B, Apley MD. Attenuation of acute plasma cortisol response in calves following intravenous sodium salicylate administration prior to castration. J Vet Pharmacol Ther 2007; 30:305-13. [PMID: 17610403 DOI: 10.1111/j.1365-2885.2007.00869.x] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Pain associated with castration in cattle is an animal welfare concern in beef production. This study examined the effect of oral aspirin and intravenous (i.v.) sodium salicylate on acute plasma cortisol response following surgical castration. Twenty bulls, randomly assigned to the following groups, (i) uncastrated, untreated controls, (ii) castrated, untreated controls, (iii) 50 mg/kg sodium salicylate i.v. precastration and (iv) 50 mg/kg aspirin (acetylsalicylic acid) per os precastration, were blood sampled at 3, 10, 20, 30, 40, 50 min and 1, 1.5, 2, 4, 6, 8, 10 and 12 h postcastration. Samples were analyzed by competitive chemiluminescent immunoassay and fluorescence polarization immunoassay for cortisol and salicylate, respectively. Data were analyzed using noncompartmental analysis, a simple cosine model, anova and t-tests. Intravenous salicylate V(d(ss)) was 0.18 L/kg, Cl(B) was 3.36 mL/min/kg and t(1/2 lambda) was 0.63 h. Plasma salicylate concentrations above 25 microg/mL coincided with significant attenuation in peak cortisol concentrations (P = 0.029). Peak salicylate concentrations following oral aspirin administration was <10 microg/mL and failed to attenuate cortisol response. Once salicylate concentrations decreased below 5 microg/mL, cortisol response in the castrated groups was significantly higher than uncastrated controls (P = 0.018). These findings have implications for designing drug regimens to provide analgesia during routine animal husbandry procedures.
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MESH Headings
- Administration, Oral
- Animals
- Animals, Newborn/physiology
- Animals, Newborn/surgery
- Anti-Inflammatory Agents, Non-Steroidal/administration & dosage
- Anti-Inflammatory Agents, Non-Steroidal/blood
- Anti-Inflammatory Agents, Non-Steroidal/pharmacology
- Anti-Inflammatory Agents, Non-Steroidal/therapeutic use
- Area Under Curve
- Cattle/metabolism
- Cattle/physiology
- Cattle/surgery
- Hydrocortisone/blood
- Injections, Intravenous/veterinary
- Male
- Orchiectomy/veterinary
- Pain, Postoperative/blood
- Pain, Postoperative/prevention & control
- Sodium Salicylate/administration & dosage
- Sodium Salicylate/blood
- Sodium Salicylate/pharmacokinetics
- Sodium Salicylate/pharmacology
- Sodium Salicylate/therapeutic use
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Affiliation(s)
- J F Coetzee
- Department of Clinical Sciences, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506-5601, USA.
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