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Fidalgo DS, Samimi K, Oyen ML, Skala MC, Jorge RMN, Parente MPL, Malanowska E, Oliveira DA, Myers KM. Development of a multilayer fetal membrane material model calibrated using bulge inflation mechanical tests. J Mech Behav Biomed Mater 2024; 150:106344. [PMID: 38160642 DOI: 10.1016/j.jmbbm.2023.106344] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2023] [Revised: 12/15/2023] [Accepted: 12/22/2023] [Indexed: 01/03/2024]
Abstract
The fetal membranes are an essential mechanical structure for pregnancy, protecting the developing fetus in an amniotic fluid environment and rupturing before birth. In cooperation with the cervix and the uterus, the fetal membranes support the mechanical loads of pregnancy. Structurally, the fetal membranes comprise two main layers: the amnion and the chorion. The mechanical characterization of each layer is crucial to understanding how each layer contributes to the structural performance of the whole membrane. The in-vivo mechanical loading of the fetal membranes and the amount of tissue stress generated in each layer throughout gestation remains poorly understood, as it is difficult to perform direct measurements on pregnant patients. Finite element analysis of pregnancy offers a computational method to explore how anatomical and tissue remodeling factors influence the load-sharing of the uterus, cervix, and fetal membranes. To aid in the formulation of such computational models of pregnancy, this work develops a fiber-based multilayer fetal membrane model that captures its response to previously published bulge inflation loading data. First, material models for the amnion, chorion, and maternal decidua are formulated, informed, and validated by published data. Then, the behavior of the fetal membrane as a layered structure was analyzed, focusing on the respective stress distribution and thickness variation in each layer. The layered computational model captures the overall behavior of the fetal membranes, with the amnion being the mechanically dominant layer. The inclusion of fibers in the amnion material model is an important factor in obtaining reliable fetal membrane behavior according to the experimental dataset. These results highlight the potential of this layered model to be integrated into larger biomechanical models of the gravid uterus and cervix to study the mechanical mechanisms of preterm birth.
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Affiliation(s)
- Daniel S Fidalgo
- Institute of Science and Innovation in Mechanical and Industrial Engineering (INEGI), R. Dr. Roberto Frias 400, 4200-465, Porto, Portugal; Mechanical Department (DEMec), Faculty of Engineering of University of Porto (FEUP), Rua Dr. Roberto Frias, 4200-465, Porto, Portugal.
| | | | - Michelle L Oyen
- Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO, USA
| | - Melissa C Skala
- Morgridge Institute for Research, Madison, WI, USA; Department of Biomedical Engineering, University of Wisconsin, Madison, WI, USA
| | - Renato M N Jorge
- Institute of Science and Innovation in Mechanical and Industrial Engineering (INEGI), R. Dr. Roberto Frias 400, 4200-465, Porto, Portugal; Mechanical Department (DEMec), Faculty of Engineering of University of Porto (FEUP), Rua Dr. Roberto Frias, 4200-465, Porto, Portugal
| | - Marco P L Parente
- Institute of Science and Innovation in Mechanical and Industrial Engineering (INEGI), R. Dr. Roberto Frias 400, 4200-465, Porto, Portugal; Mechanical Department (DEMec), Faculty of Engineering of University of Porto (FEUP), Rua Dr. Roberto Frias, 4200-465, Porto, Portugal
| | - Ewelina Malanowska
- Department of Gynaecology, Endocrinology and Gynaecologic Oncology, Pomeranian Medical University, Szczecin, Poland
| | - Dulce A Oliveira
- Institute of Science and Innovation in Mechanical and Industrial Engineering (INEGI), R. Dr. Roberto Frias 400, 4200-465, Porto, Portugal
| | - Kristin M Myers
- Department of Mechanical Engineering - Columbia University, New York, NY 10027, USA
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Moura R, Oliveira DA, Parente MPL, Kimmich N, Natal Jorge RM. A biomechanical perspective on perineal injuries during childbirth. Comput Methods Programs Biomed 2024; 243:107874. [PMID: 37866128 DOI: 10.1016/j.cmpb.2023.107874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Revised: 10/16/2023] [Accepted: 10/16/2023] [Indexed: 10/24/2023]
Abstract
BACKGROUND AND OBJECTIVE Childbirth trauma is a major health concern that affects millions of women worldwide. Severe degrees of perineal trauma, designated as obstetric anal sphincter injuries (OASIS), and levator ani muscle (LAM) injuries are associated with long-term morbidity. While significant research has been conducted on LAM avulsions, less attention has been given to perineal trauma and OASIS, which affect up to 90% and 11% of vaginal deliveries, respectively. Despite being widely discussed, childbirth trauma remains unpredictable. This work aims to enhance the modeling of the maternal musculature during childbirth, with a particular focus on understanding the mechanisms underlying the often overlooked perineal injuries. METHODS A geometrical model of the pelvic floor muscles (PFM) and perineum (including the perineal body, ischiocavernosus, bulbospongiosus, superficial and deep transverse perineal muscles) was created. The muscles were characterized by a transversely isotropic visco-hyperelastic constitutive model. Two simulations of vaginal delivery were conducted with the fetus in the vertex presentation and occipito-anterior position, with and without the perineum. RESULTS The simulation that considered the perineum exhibited higher stresses over an extended area of the PFM, which suggests that including additional structures can impact the obtained results. The maximum stretch of the urogenital hiatus was 2.94 and the maximum stress was 23.86 kPa. The perineal body reached a maximum stretch of 1.95, which was more pronounced near the urogenital hiatus, where perineal tears may occur. The external anal sphincter's transverse diameter decreased by 51% and the maximum principal stresses were observed in the area close to the perineal body, where OASIS can occur. CONCLUSIONS The present study emphasizes the importance of including most structures involved in vaginal delivery in its biomechanical analysis and represents another step further in the understanding of perineal injuries and OASIS. The superior region of the perineal body and its connection to the urogenital hiatus and anal sphincter have been identified as the most critical regions, highly susceptible to injury.
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Affiliation(s)
- Rita Moura
- Faculty of Engineering of the University of Porto, Rua Dr. Roberto Frias, s/n, 4200-465 Porto, Portugal; INEGI - Institute of Science and Innovation in Mechanical and Industrial Engineering, Rua Dr. Roberto Frias, 400, 4200-465 Porto, Portugal.
| | - Dulce A Oliveira
- INEGI - Institute of Science and Innovation in Mechanical and Industrial Engineering, Rua Dr. Roberto Frias, 400, 4200-465 Porto, Portugal.
| | - Marco P L Parente
- Faculty of Engineering of the University of Porto, Rua Dr. Roberto Frias, s/n, 4200-465 Porto, Portugal.
| | - Nina Kimmich
- Division of Obstetrics, University Hospital of Zurich, Raemistrasse 100, 8091 Zurich, Switzerland.
| | - Renato M Natal Jorge
- Faculty of Engineering of the University of Porto, Rua Dr. Roberto Frias, s/n, 4200-465 Porto, Portugal.
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Carvalho MR, Ferreira JPS, Oliveira DA, Parente MPL, Natal Jorge RM. Biomechanical characterization of the small intestine to simulate gastrointestinal tract chyme propulsion. Int J Numer Method Biomed Eng 2022; 38:e3588. [PMID: 35266291 DOI: 10.1002/cnm.3588] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Revised: 03/03/2022] [Accepted: 03/03/2022] [Indexed: 06/14/2023]
Abstract
Regular intestinal motility is essential to guarantee complete digestive function. The coordinative action and integrity of the smooth muscle layers in the small intestine's wall are critical for mixing and propelling the luminal content. However, some patients present gastrointestinal limitations which may negatively impact the normal motility of the intestine. These patients have altered mechanical and muscle properties that likely impact chyme propulsion and may pose a daily scenario for long-term complications. To better understand how mechanics affect chyme propulsion, the propulsive capability of the small intestine was examined during a peristaltic wave along the distal direction of the tract. It was assumed that such a wave works as an activation signal, inducing peristaltic contractions in a transversely isotropic hyperelastic model. In this work, the effect on the propulsion mechanics, from an impairment on the muscle contractile ability, typical from patients with systemic sclerosis, and the presence of sores resultant from ulcers was evaluated. The passive properties of the constitutive model were obtained from uniaxial tensile tests from a porcine small intestine, along with both longitudinal and circumferential directions. Our experiments show decreased stiffness in the circumferential direction. Our simulations show decreased propulsion forces in patients in systemic sclerosis and ulcer patients. As these patients may likely need medical intervention, establishing action concerning the impaired propulsion can help to ease the evaluation and treatment of future complications.
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Affiliation(s)
- Mariana R Carvalho
- Department of Mechanical Engineering, Faculty of Engineering of the University of Porto, Porto, Portugal
- Division of Biomechanics, INEGI - Institute of Science and Innovation in Mechanical and Industrial Engineering, Porto, Portugal
| | - João P S Ferreira
- Department of Mechanical Engineering, Faculty of Engineering of the University of Porto, Porto, Portugal
- Division of Biomechanics, INEGI - Institute of Science and Innovation in Mechanical and Industrial Engineering, Porto, Portugal
| | - Dulce A Oliveira
- Division of Biomechanics, INEGI - Institute of Science and Innovation in Mechanical and Industrial Engineering, Porto, Portugal
| | - Marco P L Parente
- Department of Mechanical Engineering, Faculty of Engineering of the University of Porto, Porto, Portugal
- Division of Biomechanics, INEGI - Institute of Science and Innovation in Mechanical and Industrial Engineering, Porto, Portugal
| | - Renato M Natal Jorge
- Department of Mechanical Engineering, Faculty of Engineering of the University of Porto, Porto, Portugal
- Division of Biomechanics, INEGI - Institute of Science and Innovation in Mechanical and Industrial Engineering, Porto, Portugal
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Fidalgo DS, Pouca MCPV, Oliveira DA, Malanowska E, Myers KM, Jorge RMN, Parente MPL. Mechanical Effects of a Maylard Scar During a Vaginal Birth After a Previous Caesarean. Ann Biomed Eng 2021; 49:3593-3608. [PMID: 34114131 DOI: 10.1007/s10439-021-02805-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2021] [Accepted: 05/31/2021] [Indexed: 01/12/2023]
Abstract
Caesarean section is one of the most common surgeries worldwide, even though there is no evidence supporting maternal and perinatal long-term benefits. Furthermore, the mechanical behavior of a caesarean scar during a vaginal birth after caesarean (VBAC) is not well understood since there are several questions regarding the uterine wound healing process. The aim of this study is to investigate the biomechanical Maylard fiber reorientation and stiffness influence during a VBAC through computational methods. A biomechanical model comprising a fetus and a uterus was developed, and a chemical-mechanical constitutive model that triggers uterine contractions was used, where some of the parameters were adjusted to account for the matrix and fiber stiffness increase in the caesarean scar. Several mechanical simulations were performed to analyze different scar fibers arrangements, considering different values for the respective matrix and fibers stiffness. The results revealed that a random fiber arrangement in the Maylard scar has a much higher impact on its mechanical behavior during a VBAC than the common fibers arrangement present in the uninjured uterine tissue. An increase of the matrix scar stiffness exhibits a lower impact, while an increase of the fiber's stiffness has no significant influence.
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Affiliation(s)
- D S Fidalgo
- INEGI - Institute of Science and Innovation in Mechanical and Industrial Engineering/DEMec, Faculty of Engineering, University of Porto, Porto, Portugal.
| | - M C P Vila Pouca
- INEGI - Institute of Science and Innovation in Mechanical and Industrial Engineering/DEMec, Faculty of Engineering, University of Porto, Porto, Portugal
| | - D A Oliveira
- INEGI - Institute of Science and Innovation in Mechanical and Industrial Engineering/DEMec, Faculty of Engineering, University of Porto, Porto, Portugal
| | - E Malanowska
- Department of Gynaecology, Endocrinology and Gynaecologic Oncology, Pomeranian Medical University, Szczecin, Poland
| | - K M Myers
- Department of Mechanical Engineering, Columbia University, New York, NY, USA
| | - R M Natal Jorge
- INEGI - Institute of Science and Innovation in Mechanical and Industrial Engineering/DEMec, Faculty of Engineering, University of Porto, Porto, Portugal
| | - M P L Parente
- INEGI - Institute of Science and Innovation in Mechanical and Industrial Engineering/DEMec, Faculty of Engineering, University of Porto, Porto, Portugal
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Moura R, Borges M, Vila Pouca MCP, Oliveira DA, Parente MPL, Kimmich N, Mascarenhas T, Natal RM. A numerical study on fetal head molding during labor. Int J Numer Method Biomed Eng 2021; 37:e3411. [PMID: 33131201 DOI: 10.1002/cnm.3411] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Accepted: 10/27/2020] [Indexed: 06/11/2023]
Abstract
During vaginal delivery, the fetal head molds into an elongated shape to adapt to the birth canal, a process known as fetal head molding. However, excessive molding can occur due to prolonged labor or strong contractions, leading to several disorders on the fetal head. This work aims to perform a numerical study on the biomechanics of fetal head molding by measuring specific diameters and the corresponding molding index. A finite element model of the pelvic floor muscles and the fetal body was used. The fetal head is composed of the skin and soft tissues, the skull with sutures and fontanelles, and the brain. The sutures and fontanelles were modeled with membrane elements and characterized by a visco-hyperelastic constitutive model adapted to a plane stress state. Simulations were performed to replicate the second stage of labor in the vertex presentation and occipito-anterior position. With the introduction of viscoelasticity to assess a time-dependent response, a prolonged second stage of labor resulted in higher molding. The pressure exerted by the birth canal and surrounding structures, along with the presence of the pelvic floor muscles, led to a percentage of molding of 9.1%. Regarding the pelvic floor muscles, a 19.4% reduction on the reaction forces and a decrease of 2.58% in muscle stretching was reported, which indicates that sufficient molding may lead to fewer injuries. The present study demonstrates the importance of focusing on the fetus injuries with non-invasive methods that can allow to anticipate complications during labor.
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Affiliation(s)
- Rita Moura
- Department of Mechanical Engineering, Faculty of Engineering of the University of Porto, Porto, Portugal
- Division of Biomechanics, INEGI - Institute of Science and Innovation in Mechanical and Industrial Engineering, Porto, Portugal
| | - Margarida Borges
- Department of Mechanical Engineering, Faculty of Engineering of the University of Porto, Porto, Portugal
- Division of Biomechanics, INEGI - Institute of Science and Innovation in Mechanical and Industrial Engineering, Porto, Portugal
| | - Maria C P Vila Pouca
- Division of Biomechanics, INEGI - Institute of Science and Innovation in Mechanical and Industrial Engineering, Porto, Portugal
| | - Dulce A Oliveira
- Division of Biomechanics, INEGI - Institute of Science and Innovation in Mechanical and Industrial Engineering, Porto, Portugal
| | - Marco P L Parente
- Department of Mechanical Engineering, Faculty of Engineering of the University of Porto, Porto, Portugal
- Division of Biomechanics, INEGI - Institute of Science and Innovation in Mechanical and Industrial Engineering, Porto, Portugal
| | - Nina Kimmich
- Division of Obstetrics, University Hospital of Zurich, Zurich, Switzerland
| | - Teresa Mascarenhas
- Department of Gynecology and Obstetrics, Centro Hospitalar de São João - EPE, Faculty of Medicine of the University of Porto, Porto, Portugal
| | - Renato M Natal
- Department of Mechanical Engineering, Faculty of Engineering of the University of Porto, Porto, Portugal
- Division of Biomechanics, INEGI - Institute of Science and Innovation in Mechanical and Industrial Engineering, Porto, Portugal
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Vila Pouca MCP, Ferreira JPS, Oliveira DA, Parente MPL, Natal Jorge RM. Viscous effects in pelvic floor muscles during childbirth: A numerical study. Int J Numer Method Biomed Eng 2018; 34:e2927. [PMID: 28886617 DOI: 10.1002/cnm.2927] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2017] [Revised: 08/17/2017] [Accepted: 09/02/2017] [Indexed: 06/07/2023]
Abstract
During vaginal delivery, women sustain stretching of their pelvic floor, risking tissue injury and adverse outcomes. Realistic numerical simulations of childbirth can help in the understanding of the pelvic floor mechanics and on the prevention of related disorders. In previous studies, biomechanical finite element simulations of a vaginal delivery have been performed disregarding the viscous effects present on all biological soft tissues. The inclusion of the viscoelastic behaviour is fundamental, since it allows to investigate rate-dependent responses. The present work uses a viscohyperelastic constitutive model to evaluate how the childbirth duration affects the efforts sustained by the pelvic floor during delivery. It was concluded that viscoelasticity adds a stiffness component that leads to higher forces comparing with the elastic response. Viscous solutions are rate dependent, and precipitous labours could be associated to higher efforts, while lower reaction forces were denoted for normal and prolonged labours, respectively. The existence of resting stages during labour demonstrated the capability of the tissue to relax and recover some of the initial properties, which helped to lower the forces and stresses involved. The present work represents a step further in achieving a robust non-invasive procedure, allowing to estimate how obstetrical factors influence labour and its outcomes.
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Affiliation(s)
- M C P Vila Pouca
- Faculdade de Engenharia da Universidade do Porto, Rua Dr. Roberto Frias, s/n, 4200, Porto, Portugal
| | - J P S Ferreira
- Faculdade de Engenharia da Universidade do Porto, Rua Dr. Roberto Frias, s/n, 4200, Porto, Portugal
| | - D A Oliveira
- INEGI-Instituto de Ciência e Inovação em Engenharia Mecânica e Engenharia Industrial, Rua Dr. Roberto Frias, 400, 4200, Porto, Portugal
| | - M P L Parente
- Faculdade de Engenharia da Universidade do Porto, Rua Dr. Roberto Frias, s/n, 4200, Porto, Portugal
- INEGI-Instituto de Ciência e Inovação em Engenharia Mecânica e Engenharia Industrial, Rua Dr. Roberto Frias, 400, 4200, Porto, Portugal
| | - R M Natal Jorge
- Faculdade de Engenharia da Universidade do Porto, Rua Dr. Roberto Frias, s/n, 4200, Porto, Portugal
- INEGI-Instituto de Ciência e Inovação em Engenharia Mecânica e Engenharia Industrial, Rua Dr. Roberto Frias, 400, 4200, Porto, Portugal
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Oliveira DA, Parente MPL, Calvo B, Mascarenhas T, Natal Jorge RM. A holistic view of the effects of episiotomy on pelvic floor. Int J Numer Method Biomed Eng 2017; 33. [PMID: 28444997 DOI: 10.1002/cnm.2892] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2016] [Revised: 03/18/2017] [Accepted: 04/23/2017] [Indexed: 06/07/2023]
Abstract
Vaginal delivery is commonly accepted as a risk factor in pelvic floor dysfunction; however, other obstetric procedures (episiotomy) are still controversial. In this work, to analyze the relationship between episiotomy and pelvic floor function, a finite element model of the pelvic cavity is used considering the pelvic floor muscles (PFMs) with damaged regions from spontaneous vaginal delivery and from deliveries with episiotomy. Common features assessed at screening of pelvic floor dysfunction are evaluated during numerical simulations of both Valsalva maneuver and contraction. As stated in literature, a weakening of the PFM, represented by damaged regions in the finite element model, would lead to a bladder neck hypermobility measured as a variation between the α angle (angle between the bladder neck and the symphysis pubis line and the midline of the symphysis) during straining and withholding. However, the present work does not associate bladder neck hypermobility to a more damaged muscle, suggesting that other supportive structures also play an important role in the stabilization of the pelvic organs. Furthermore, considering passive behavior of the PFM, independently of the amount of damage considered, the resultant displacements of the pelvic structures are the same. Regarding the PFM contraction, the less the muscle is damaged, the greater the movements of the pelvic organs. Furthermore, the internal organs of the female genital system are the most affected by the unhealthy of the PFM. Additionally, the present study shows that the muscle damage affects more the active muscle component than the passive.
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Affiliation(s)
- Dulce A Oliveira
- INEGI, Faculty of Engineering, University of Porto, Porto, Portugal
| | | | - Begoña Calvo
- Aragón Institute of Engineering Research, University of Zaragoza, Zaragoza, Spain
- Biomedical Research Networking Centre on Bioengineering, Biomaterials & Nanomedicine (CIBER-BBN), Madrid, Spain
| | - Teresa Mascarenhas
- Department of Gynecology and Obstetrics, Centro Hospitalar de São João-EPE, Faculty of Medicine, University of Porto, Porto, Portugal
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Cota LG, Moreira PA, Brandão MM, Royo VA, Junior AFM, Menezes EV, Oliveira DA. Structure and genetic diversity of Anacardium humile (Anacardiaceae): a tropical shrub. Genet Mol Res 2017; 16:gmr-16-03-gmr.16039778. [PMID: 28973757 DOI: 10.4238/gmr16039778] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Anacardium humile Saint Hilaire is a tropical shrub native to the Cerrado biome. It is a fruiting species with biological, medicinal, and socioeconomic significance. Thus, knowing how the genetic variability of natural populations is organized allows for the establishment of strategies for conservation and the sustainable use of the species and its biome. Six microsatellite loci previously developed from Anacardium occidentale were used to investigate the spatial genetic structure and genetic diversity of eight natural A. humile populations based on analyses of 242 adult plants. The results obtained indicate that these populations show a high level of genetic diversity (expected heterozygosity = 0.710). The endogamy coefficient was positive and significant for most populations, with a mean of 0.142 (P = 0.001). The genetic differentiation between populations was low (θ = 0.075 and GST = 0.066) but significant (P = 0.0001). The genotypes of five of the eight populations were non-randomly distributed with clusters of related plants for which the coancestry values were positive and significant. These populations exhibited high and significant endogamy indices. The results obtained for A. humile populations show that genetic conservation programs should be implemented to maintain this species.
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Affiliation(s)
- L G Cota
- Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia Geral, Universidade Estadual de Montes Claros, Campus Universitário Professor Darcy Ribeiro, , Brasil
| | - P A Moreira
- Departamento de Biologia, Instituto de Ciências Exatas e Biológicas, Universidade Federal de Ouro Preto, Campus Morro do Cruzeiro, , Brasil
| | - M M Brandão
- Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia Geral, Universidade Estadual de Montes Claros, Campus Universitário Professor Darcy Ribeiro, , Brasil
| | - V A Royo
- Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia Geral, Universidade Estadual de Montes Claros, Campus Universitário Professor Darcy Ribeiro, , Brasil
| | - A F Melo Junior
- Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia Geral, Universidade Estadual de Montes Claros, Campus Universitário Professor Darcy Ribeiro, , Brasil
| | - E V Menezes
- Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia Geral, Universidade Estadual de Montes Claros, Campus Universitário Professor Darcy Ribeiro, , Brasil
| | - D A Oliveira
- Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia Geral, Universidade Estadual de Montes Claros, Campus Universitário Professor Darcy Ribeiro, , Brasil
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Xavier AREO, Lima ER, Oliveira AME, Cardoso L, Santos J, Cangussu CHC, Leite LN, Quirino MCL, Júnior IGC, Oliveira DA, Xavier MAS. Genetic diversity of Bacillus sp producers of amylase isolated from the soil. Genet Mol Res 2017; 16:gmr-16-03-gmr.16039771. [PMID: 28973750 DOI: 10.4238/gmr16039771] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
The microorganisms are the best source of extracellular enzymes since they allow an economical technology with low-resource consumption compared to animals and plants. The amylases are among the most important enzymes being the genus Bacillus one of the most investigated due to its ability to produce this enzyme. The objective of this study was to isolate and analyze the genetic diversity among bacteria of the genus Bacillus sp producer of amylase originated from the soil. To this end, soil samples were collected and submitted to the condition of extreme temperature. The serial dilution procedure followed by seeding on solid medium containing starch was used for isolation of strains that produce amylase. The microorganisms isolated were subjected to standard morphological methods for presumptive identification of the genus Bacillus. The PCR assay with the universal genetic marker 16S rDNA was used for confirmation of bacterial strain. All the 10 isolates presumptively identified as bacteria amplified a fragment of 370 bp corresponding to the 16S rDNA gene. The enzymatic activity was expressed as an enzymatic index (EI), after 24 h of incubation. All isolate producers of amylase exhibited EI ≥ 2.0. The determination of the genetic profile and the clonal relationship among the isolates were performed by the method of ERIC-PCR polymorphism. The isolates of Bacillus spp were divided into 2 groups (I and II). Through this method, the discriminatory capacity of this analysis of polymorphisms was verified in differing producer strains from those not producing amylase.
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Affiliation(s)
- A R E O Xavier
- Laboratório de Bioprospecção e Recursos Genéticos, Centro de Ciências Biológicas e da Saúde, Universidade Estadual de Montes Claros, Centro de Ciências Biológicas e da Saúde, Laboratório de Bioprospecção e Recursos Genéticos, , Brasil .,Laboratório de Microbiologia, Centro de Ciências Biológicas e da Saúde, , , Brasil
| | - E R Lima
- Laboratório de Bioprospecção e Recursos Genéticos, Centro de Ciências Biológicas e da Saúde, Universidade Estadual de Montes Claros, Centro de Ciências Biológicas e da Saúde, Laboratório de Bioprospecção e Recursos Genéticos, , Brasil
| | | | - L Cardoso
- Laboratório de Microbiologia, Centro de Ciências Biológicas e da Saúde, , , Brasil
| | - J Santos
- Laboratório de Microbiologia, Centro de Ciências Biológicas e da Saúde, , , Brasil
| | - C H C Cangussu
- Laboratório de Microbiologia, Centro de Ciências Biológicas e da Saúde, , , Brasil
| | - L N Leite
- Laboratório de Microbiologia, Centro de Ciências Biológicas e da Saúde, , , Brasil
| | - M C L Quirino
- Laboratório de Microbiologia, Centro de Ciências Biológicas e da Saúde, , , Brasil
| | - I G C Júnior
- Laboratório de Microbiologia, Centro de Ciências Biológicas e da Saúde, , , Brasil
| | - D A Oliveira
- Laboratório de Bioprospecção e Recursos Genéticos, Centro de Ciências Biológicas e da Saúde, Universidade Estadual de Montes Claros, Centro de Ciências Biológicas e da Saúde, Laboratório de Bioprospecção e Recursos Genéticos, , Brasil
| | - M A S Xavier
- Laboratório de Bioprospecção e Recursos Genéticos, Centro de Ciências Biológicas e da Saúde, Universidade Estadual de Montes Claros, Centro de Ciências Biológicas e da Saúde, Laboratório de Bioprospecção e Recursos Genéticos, , Brasil.,Laboratório de Microbiologia, Centro de Ciências Biológicas e da Saúde, , , Brasil
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Oliveira DA, Parente MPL, Calvo B, Mascarenhas T, Jorge RMN. The management of episiotomy technique and its effect on pelvic floor muscles during a malposition childbirth. Comput Methods Biomech Biomed Engin 2017; 20:1249-1259. [DOI: 10.1080/10255842.2017.1349762] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
| | | | - Begoña Calvo
- Aragón Institute of Engineering Research, University of Zaragoza, Zaragoza, Spain
- Biomedical Research Networking Centre on Bioengineering, Biomaterials & Nanomedicine (CIBER-BBN), Madrid, Spain
| | - Teresa Mascarenhas
- Faculty of Medicine, Department of Gynecology & Obstetrics, Centro Hospitalar de São João–EPE, University of Porto, Porto, Portugal
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11
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Rocha RF, Menezes EV, Xavier AREO, Royo VA, Oliveira DA, Júnior AFM, Dias ES, Lima ACVMR, Michalsky EM. Standardization of a molecular method for epidemiologic identification of Leishmania strains. Genet Mol Res 2016; 15:gmr8854. [PMID: 27808385 DOI: 10.4238/gmr.15048854] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Molecular studies of the evolutionary relationships among Leishmania species suggest the presence of high genetic variation within this genus, which has a direct effect on public health in many countries. The coexistence of species in a particular region can result in different leishmaniasis clinical forms and treatment responses. We aimed to standardize the kinetoplast DNA (kDNA) enterobacterial repetitive intergenic consensus (ERIC) sequence polymerase chain reaction (PCR) method for molecular epidemiological identification of Leishmania strains, and estimate existing inter-strain genomic differences and kDNA signatures using this technique. ERIC-PCR of genomic DNA revealed genetic polymorphisms between species, although some strains shared many DNA fragments. Leishmania guyanensis, L. amazonensis, and L. braziliensis clustered together in a dendrogram with similarities ranging from 42.0 to 61.0%, whereas L. chagasi grouped with these three species with a similarity of 28.0%. After amplification of kDNA, 780-bp bands were extracted from an agarose gel and purified for analysis of its genetic signature. kDNA ERIC-PCR electrophoretic patterns consisted of 100- to 600- bp fragments. Using these profiles, L. braziliensis and L. guyanensis grouped with a similarity of 26.0%, and L. amazonensis and L. chagasi clustered based on a similarity of 100%. The electrophoretic profiles and dendrograms showed that, for epidemiological identification by ERIC-PCR, genomic DNA had greater discriminatory power than kDNA did. More strains need to be analyzed to validate the kDNA ERIC-PCR method. The genomes of these strains should be sequenced for better epidemiological identification of Leishmania species.
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Affiliation(s)
- R F Rocha
- Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia, Centro de Ciências Biológicas e da Saúde, Universidade Estadual de Montes Claros, Campus Universitário Professor Darcy Ribeiro, Montes Claros, MG, Brasil
| | - E V Menezes
- Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia, Centro de Ciências Biológicas e da Saúde, Universidade Estadual de Montes Claros, Campus Universitário Professor Darcy Ribeiro, Montes Claros, MG, Brasil
| | - A R E O Xavier
- Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia, Centro de Ciências Biológicas e da Saúde, Universidade Estadual de Montes Claros, Campus Universitário Professor Darcy Ribeiro, Montes Claros, MG, Brasil
| | - V A Royo
- Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia, Centro de Ciências Biológicas e da Saúde, Universidade Estadual de Montes Claros, Campus Universitário Professor Darcy Ribeiro, Montes Claros, MG, Brasil
| | - D A Oliveira
- Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia, Centro de Ciências Biológicas e da Saúde, Universidade Estadual de Montes Claros, Campus Universitário Professor Darcy Ribeiro, Montes Claros, MG, Brasil
| | - A F M Júnior
- Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia, Centro de Ciências Biológicas e da Saúde, Universidade Estadual de Montes Claros, Campus Universitário Professor Darcy Ribeiro, Montes Claros, MG, Brasil
| | - E S Dias
- Centro de Pesquisas René Rachou, Unidade da FIOCRUZ, Belo Horizonte, MG, Brasil
| | - A C V M R Lima
- Centro de Pesquisas René Rachou, Unidade da FIOCRUZ, Belo Horizonte, MG, Brasil
| | - E M Michalsky
- Centro de Pesquisas René Rachou, Unidade da FIOCRUZ, Belo Horizonte, MG, Brasil
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12
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Simões GAR, Xavier MAS, Oliveira DA, Menezes EV, Magalhães SSG, Gandra JACD, Xavier AREO. Genetic markers for detection of Escherichia coli K-12 harboring ampicillin-resistance plasmid from an industrial wastewater treatment effluent pond. Genet Mol Res 2016; 15:gmr8528. [PMID: 27323199 DOI: 10.4238/gmr.15028528] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Biotechnology industries that use recombinant DNA technology are potential sources for release of genetically modified organisms to the environment. Antibiotic-resistance marker genes are commonly used for recombinant bacteria selection. One example is the marker gene coding for β-lactamase (bla) in plasmids found in Escherichia coli K-12. The aim of this study was to provide an approach to develop a molecular method for genetic marker detection in E. coli K-12 harboring bla genes from an industrial wastewater treatment effluent pond (IWTEP). For the detection of bla and Achromobacter lyticus protease I (api) genes in samples from IWTEP, we employed multiplex polymerase chain reaction (PCR) using E. coli K-12 genetic marker detection primers, previously described in the literature, and primers designed in our laboratory. The microbiological screening method resulted in 22 bacterial colony-forming units isolated from three different IWTEP harvesting points. The multiplex PCR amplicons showed that five isolates were positive for the bla gene marker and negative for the E. coli K-12 and api genes. The 16S rRNA regions of positive microorganisms carrying the bla gene were genotyped by the MicroSeq®500 system. The bacteria found were Escherichia spp (3/5), Chromobacterium spp (1/5), and Aeromonas spp (1/5). None of the 22 isolated microorganisms presented the molecular pattern of E. coli K-12 harboring the bla gene. The presence of microorganisms positive for the bla gene and negative for E. coli K-12 harboring bla genes at IWTEP suggests that the ampicillin resistance found in the isolated bacteria could be from microorganisms other than the E. coli K-12 strain harboring plasmid.
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Affiliation(s)
- G A R Simões
- Programa de Mestrado Profissional em Biotecnologia, Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia, Centro de Ciências Biológicas e da Saúde, Universidade Estadual de Montes Claros, Montes Claros, MG, Brasil
| | - M A S Xavier
- Programa de Mestrado Profissional em Biotecnologia, Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia, Centro de Ciências Biológicas e da Saúde, Universidade Estadual de Montes Claros, Montes Claros, MG, Brasil
| | - D A Oliveira
- Programa de Mestrado Profissional em Biotecnologia, Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia, Centro de Ciências Biológicas e da Saúde, Universidade Estadual de Montes Claros, Montes Claros, MG, Brasil
| | - E V Menezes
- Programa de Mestrado Profissional em Biotecnologia, Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia, Centro de Ciências Biológicas e da Saúde, Universidade Estadual de Montes Claros, Montes Claros, MG, Brasil
| | - S S G Magalhães
- Programa de Mestrado Profissional em Biotecnologia, Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia, Centro de Ciências Biológicas e da Saúde, Universidade Estadual de Montes Claros, Montes Claros, MG, Brasil
| | - J A C D Gandra
- Programa de Mestrado Profissional em Biotecnologia, Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia, Centro de Ciências Biológicas e da Saúde, Universidade Estadual de Montes Claros, Montes Claros, MG, Brasil
| | - A R E O Xavier
- Programa de Mestrado Profissional em Biotecnologia, Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia, Centro de Ciências Biológicas e da Saúde, Universidade Estadual de Montes Claros, Montes Claros, MG, Brasil
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13
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Neiva DS, Melo Júnior AF, Oliveira DA, Royo VA, Brandão MM, Menezes EV. Acrocomia emensis (Arecaceae) genetic structure and diversity using SSR molecular markers. Genet Mol Res 2016; 15:gmr7785. [PMID: 27050985 DOI: 10.4238/gmr.15017785] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Acrocomia emensis, popularly known as the creeping tucum, belongs to the family Arecaceae, and is an oilseed specie of the Brazilian Savannah. The expansion of agricultural activity has rapidly destroyed its natural habitat, leading to a decrease in its population size. Genetic studies can be used to investigate the genetic variability, and may assist with the charting future conservation strategies. In this study the genetic diversity and structure of 150 individuals sampled in three locations in Minas Gerais were analysed, based on the transferability of six microsatellite markers, previously developed for A. aculeata. The results indicate that the populations studied have low levels of genetic variability (Ho = 0.148) and high, positive and significant inbreeding coefficient, indicating an excess of homozygotes. The average heterozygosity within the population (Hs = 0.700) accounted for 95.03% of the total genetic diversity, indicating that there is greater variability within population than between them, consistent with low genetic differentiation between population (GST = 0.046). Bayesian analysis identified three distinct groups; however, populations shared large numbers of alleles, which can be explained by the reduced distance between populations. These results reveal the need to implement genetic conservation programs for the maintenance of this species and to prioritize population from Bonito and Brasília, which showed the lowest values of genetic diversity.
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Affiliation(s)
- D S Neiva
- Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia Geral, Universidade Estadual de Montes Claros, Campus Universitário Professor Darcy Ribeiro, Montes Claros, MG, Brasil
| | - A F Melo Júnior
- Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia Geral, Universidade Estadual de Montes Claros, Campus Universitário Professor Darcy Ribeiro, Montes Claros, MG, Brasil
| | - D A Oliveira
- Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia Geral, Universidade Estadual de Montes Claros, Campus Universitário Professor Darcy Ribeiro, Montes Claros, MG, Brasil
| | - V A Royo
- Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia Geral, Universidade Estadual de Montes Claros, Campus Universitário Professor Darcy Ribeiro, Montes Claros, MG, Brasil
| | - M M Brandão
- Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia Geral, Universidade Estadual de Montes Claros, Campus Universitário Professor Darcy Ribeiro, Montes Claros, MG, Brasil
| | - E V Menezes
- Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia Geral, Universidade Estadual de Montes Claros, Campus Universitário Professor Darcy Ribeiro, Montes Claros, MG, Brasil
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14
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Oliveira DA, Parente MPL, Calvo B, Mascarenhas T, Jorge RMN. A biomechanical analysis on the impact of episiotomy during childbirth. Biomech Model Mechanobiol 2016; 15:1523-1534. [PMID: 27002616 DOI: 10.1007/s10237-016-0781-6] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2015] [Accepted: 03/03/2016] [Indexed: 10/22/2022]
Abstract
Episiotomy is still a controversy issue among physicians, despite the enormous growth of clinical research. Therefore, the potential of numerical modeling of anatomical structures to simulate biomechanical processes was exploited to realize quantitatively the real effects of the episiotomy and its consequences on the pelvic floor muscle. As such, a numerical model was used composed of pelvic floor muscles, a surface delimiting the anterior region, and a fetus body. A normal vaginal delivery without and with different episiotomies was simulated with the fetus in vertex presentation and occipitoanterior position. According to our numerical results, a mediolateral episiotomy has a protective effect, reducing the stress on the muscles, and the force required to delivery successfully up to 52.2 %. The intervention also has benefits on muscle injury, reducing the damage to a small zone. This study demonstrates the feasibility of using a computational modeling approach to study parturition, namely the capability to isolate and evaluate the mechanical significance of a single feature. It must, however, be taken into account that the numerical model does not assess problems that may occur as blood loss, infections and others, so it is necessary to examine whether the benefits of an intervention outweigh the risks.
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Affiliation(s)
- Dulce A Oliveira
- INEGI, LAETA, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, s/n, 4200-465, Porto, Portugal.
| | - Marco P L Parente
- INEGI, LAETA, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, s/n, 4200-465, Porto, Portugal
| | - Begoña Calvo
- Aragón Institute of Engineering Research, University of Saragossa, Calle María de Luna 3, 50018, Saragossa, Spain.,Biomedical Research Networking Centre on Bioengineering, Biomaterials and Nanomedicine (CIBER-BBN), Madrid, Spain
| | - Teresa Mascarenhas
- Department of Gynecology and Obstetrics, Centro Hospitalar de São João-EPE, Faculty of Medicine, University of Porto, Alameda Prof. Hernâni Monteiro, 4200-319, Porto, Portugal
| | - Renato M Natal Jorge
- INEGI, LAETA, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, s/n, 4200-465, Porto, Portugal
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15
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Oliveira DA, Parente MP, Calvo B, Mascarenhas T, Natal Jorge RM. Numerical simulation of the damage evolution in the pelvic floor muscles during childbirth. J Biomech 2016; 49:594-601. [DOI: 10.1016/j.jbiomech.2016.01.014] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2015] [Revised: 01/13/2016] [Accepted: 01/28/2016] [Indexed: 01/30/2023]
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16
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Cota LG, Moreira PA, Menezes EV, Gomes AS, Ericsson ARO, Oliveira DA, Melo AF. Transferability and characterization of simple sequence repeat markers from Anacardium occidentale to A. humile (Anacardiaceae). Genet Mol Res 2012; 11:4609-16. [PMID: 23096925 DOI: 10.4238/2012.october.17.7] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Use of molecular markers can be limited by the high cost and extensive time required for their development. Transfer of simple sequence repeat (SSR) markers reduces the cost and time limitations and has allowed the use of these markers in a larger number of species. We tested 11 SSR markers previously developed for Anacardium occidentale on A. humile. The 11 loci were successfully amplified in A. humile. All loci were polymorphic and generated a mean of 5.4 alleles per locus. The observed heterozygosity was lower than the expected heterozygosity under Hardy-Weinberg equilibrium for most loci, with mean values of 0.463 and 0.696, respectively. The endogamy coefficients were positive and significant for seven loci. However, the combined probability of paternity exclusion was high, and the combined probability of genetic identity was low. None of the pairs of loci were in linkage disequilibrium. The informative power of these loci demonstrates that they are suitable for studies of diversity and genetic structure of natural populations of A. humile. In addition, the loci are suitable for estimating gene flow between populations, assessing species crossing preferences, and performing interspecific comparisons.
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Affiliation(s)
- L G Cota
- Laboratório de Bioprospecção e Recursos Genéticos, Departamento de Biologia Geral, Universidade Estadual de Montes Claros, Montes Claros, MG, Brasil
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17
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Moreira PA, Sousa SAS, Oliveira FA, Araújo NH, Fernandes GW, Oliveira DA. Characterization of nine transferred SSR markers in the tropical tree species Enterolobium contortisiliquum (Fabaceae). Genet Mol Res 2012; 11:3729-34. [PMID: 22930434 DOI: 10.4238/2012.august.17.11] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Transfer of molecular markers is widely used in conservation genetic studies. We investigated the transferability of simple sequence repeat (SSR) markers developed for Enterolobium cyclocarpum to E. contortisiliquum, a tropical tree widely distributed in dry forests. A set of 9 evaluated SSR markers were amplified in E. contortisiliquum and the degree of polymorphism was assessed in 8 trees sampled from each of 5 populations from central Brazil. All loci were polymorphic and the mean number of alleles for all loci was 6. In addition, all pairs of SSR markers were in linkage equilibrium. For most loci, the observed heterozygosity was higher than the expected heterozygosity under Hardy-Weinberg equilibrium, with fixation indices not significantly different from zero. The combined probability of paternity exclusion was high and the probability of identity was very low. We conclude that these SSR markers developed for E. cyclocarpum are applicable for genetic studies of E. contortisiliquum.
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Affiliation(s)
- P A Moreira
- Laboratório de Ecologia Evolutiva e Biodiversidade, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brasil.
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18
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Oliveira DA, Melo Júnior AF, Brandão MM, Rodrigues LA, Menezes EV, Ferreira PRB. Genetic diversity in populations of Acrocomia aculeata (Arecaceae) in the northern region of Minas Gerais, Brazil. Genet Mol Res 2012; 11:531-8. [PMID: 22535388 DOI: 10.4238/2012.march.8.1] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Macaúba (Acrocomia aculeata) is a palm of economic importance, widely distributed in natural forests from Mexico to Uruguay. We analyzed the genetic diversity of populations of macaúba (A. aculeata) in the northern region of the State of Minas Gerais, Brazil. Young leaves from 10 macaúba individuals encompassing 49 genotypes of macaúba were collected from Montes Claros, Itacambira, Brasília de Minas, Mirabela, and Grão Mogol. After extraction and amplification of samples, the amplified fragments were separated by electrophoresis. We found high levels of genetic diversity within the populations. Genetic diversity indices were high, except in the Itacambira and Mirabela populations. Results show that Mirabela and Itacambira populations can require conservation strategies because they present lower values of genetic diversity.
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Affiliation(s)
- D A Oliveira
- Laboratório de Bioprospecção e Recursos Genéticos, Programa de Pós-Graduação em Biotecnologia, Departamento de Biologia Geral, Universidade Estadual de Montes Claros, Montes Claros, MG, Brasil.
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19
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Simões M, Pazetti M, Domiciano SM, Oliveira DA, Palangana AJ. Reentrant isotropic-nematic phase transition. Phys Rev E Stat Nonlin Soft Matter Phys 2008; 78:022702. [PMID: 18850876 DOI: 10.1103/physreve.78.022702] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2008] [Indexed: 05/26/2023]
Abstract
This work aims at a geometrical semimicroscopic model to study the reentrant isotropic-nematic phase transition. It will be assumed that the micellar change of shape in lyotropics can be understood as the deformation of an ellipsoid which is assumed to have the idealized form of a micelle. It will be shown that such deformation is characterized by two kinds of quantities. The first one, which is a scalar determined by the ellipsoidal eccentricity, gives the intensity of the ellipsoidal deformation. The second one, which has a tensorial nature, describes the spatial distribution of such deformation and is proportional to the tensorial nematic order parameter. We construct the invariants of such deformation and couple it with the orientational order parameter to study the reentrant isotropic-nematic phase transition. We determine the thermodynamical characteristics of this phase transition and shown that it is a second-order phase transition. By comparing the theory so constructed with the experimental data, the parameters of the model will be determined.
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Affiliation(s)
- M Simões
- Departamento de Física, Universidade Estadual de Londrina, Campus Universitário, 86051-990-Londrina, Paraná, Brazil.
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20
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Oliveira DA, Pereira DG, Fernandes AMAP, De Castro SL, Souza Brito ARM, De Souza AO, Durán N. Trypanocidal activity of 2-propen-1-amine derivatives on trypomastigotes culture and in animal model. Parasitol Res 2004; 95:161-6. [PMID: 15616861 DOI: 10.1007/s00436-004-1247-9] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2004] [Accepted: 09/28/2004] [Indexed: 11/25/2022]
Abstract
The cis and trans isomers (either E or Z isomers) of the unsubstituted and bromo-2-propen-1-amine derivatives were evaluated in vitro on Trypanosoma cruzi. The results showed that cis is the most active isomeric form against trypomastigote forms of T. cruzi, indicating that it may contribute most to the trypanocidal effect. All mice which received 5 mg kg(-1) daily for 9 consecutive days, or 200 mg kg(-1) in a single dose of the bromo derivative of 2-propen-1-amine, survived after an infection with 10(4) trypomastigotes/ml of the Y-strain of T. cruzi. They also had a significantly lower parasitemia than the controls. However, with 100 mg kg(-1) of benznidazol for 9 consecutive days, 25% of the animals died by the end of the evaluation 40 days after infection. The involvement of the biosynthesis of ergosterol in the trypanocidal effect of the unsubstituted 2-propen-1-amine derivative was investigated on proliferative epimastigote forms of the parasite. The chromatographic analyses of the lipid extracts obtained from parasites treated with 2-propen-1-amine derivatives and controls (not treated) revealed that growth inhibition is correlated with the accumulation of squalene and the decrease of ergosterol levels. These results suggest that inhibition of the biosynthesis of ergosterol is an important target for the action of the 2-propen-1-amine derivative on T. cruzi through the inhibition of the enzyme squalene epoxidase.
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Affiliation(s)
- D A Oliveira
- Instituto de Química, Biological Chemistry Laboratory, Universidade Estadual de Campinas, Campinas, CP 6154, CEP 13083-970, São Paulo, S.P., Brazil
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21
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Abstract
A tandem fusion involving chromosome 4 and chromosome 21 of the bovine karyotype, is described in a newborn Holstein-Friesian heifer which was also a blood chimera exhibiting female cells of normal bovine karyotype and male cells with a 59, XY + tan (4:21). The rearranged chromosome was a dicentric and the longest acrocentric in the male cells. Apart from the features characteristic of the freemartin condition, no other phenotypic abnormalities were detected in the heifer calf. Since the heifer and other calves of the herd were not eartagged at birth, 20 newborn bull calves of the same age in the herd were analyzed in an attempt to identify the male born co-twin to the heifer. However, this effort proved unsuccessful, probably because the co-twin had died in utero or was erroneously included among the calves sent to the slaughter house.
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Affiliation(s)
- L E Pinheiro
- Federal University of Minas Gerais, Department of Zootechny, Belo Horizonte, Brazil
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22
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Abstract
Patient with autoimmune haemolytic anaemia and thrombocytopenic purpura (Evans Syndrome), treated with immunosuppressive therapy (prednisone and azathioprine) developed brain abscess unresponsive to antimicrobial therapy, in spite of its 23 days duration. Diagnosis could be possible after recover secretion of peribulbar abscess and maintenance of this material over seven days in incubation.
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Affiliation(s)
- C H Barata
- Disciplina de Doenças Infecciosas e Parasitárias, Faculdade de Medicina do Triângulo Mineiro, Av. Getúlio Guaritá s/n, 38025-000 Uberaba, MG, Brazil.
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23
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Oliveira DA, Fernandes AM, De Conti R, Rodríguez JA, Haun M, Souza-Brito AR, De Castro SL, Durán N. Evaluation of in vitro toxicity of N,N-dimethyl-2-propen-1-amines isomers. Pharmazie 1999; 54:847-50. [PMID: 10603610] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/14/2023]
Abstract
The trypanocidal activities of cis-3-(4'-bromo[1,1'-biphenyl]-4-yl)- 3-(phenyl)-N,N-dimethyl-2-propen-1-amine (Vb) and cis-3-(4'-bromo[1,1'-biphenyl]-4-yl)-3-(4-bromophenyl)-N,N-dimethyl-2- propen-1-anine (Vg) appeared 6.3 and 3.5 fold more active than the trans-isomers, respectively. Multi-endpoints for toxicity were also applied. Neutral red uptake (NRU), tetrazolium salt reduction (MTT), DNA content on V79 fibroblast cell culture and acute toxicity von E. coli were measured. The IC50 through DNA contents was lower for the cis-isomers in both series of compounds 5b: 7.8 microM and 5g: 5.2 microM). NRU values for derivative 5b in isomeric mixture shows the same value as the isolated isomers however, in the case of 5g a more significant toxicity of the cis-isomer was found. MTT values show that 5g is more toxic than 5b. In both cases, the acute toxicity of the trans-isomers was higher than that of the cis-isomers.
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Affiliation(s)
- D A Oliveira
- Pharmacology Department, Faculdade de Ciências Médicas, Universidade Estadual de Campinas, S.P. Brazil
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Oliveira DA, Shi YP, Oloo AJ, Boriga DA, Nahlen BL, Hawley WA, Holloway BP, Lal AA. Field evaluation of a polymerase chain reaction-based nonisotopic liquid hybridization assay for malaria diagnosis. J Infect Dis 1996; 173:1284-7. [PMID: 8627088 DOI: 10.1093/infdis/173.5.1284] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
Abstract
In a blind field evaluation of a nonisotopic liquid hybridization assay for detection of malaria parasites, 100 blood samples were tested from an area in which malaria is endemic; light microscopy was used as the reference test. Sensitivity, specificity, and positive and negative predictive values of the hybridization assay were 100%. One sample that was microscopy-negative and hybridization-positive was positive when reexamined. Another sample that was microscopy-positive and hybridization-negative was negative at reexamination. The detection limit of the test was > or = 0.0005% parasitemia. Four samples with mixed infections were misdiagnosed by microscopy as single-species infections. Four samples diagnosed as mixed infections by microscopy and single infection by the hybridization test had no evidence of a second Plasmodium species upon reexamination. The polymerase chain-reaction-based nonisotopic liquid hybridization assay was better than conventional light microscopy in detecting low-grade parasite infection and offers an exceptional advantage for detecting mixed infections.
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Affiliation(s)
- D A Oliveira
- Division of Parasitic Diseases (National Center for Infectious Diseases), Centers for Disease Control and Prevention, Atlanta, Georgia 30341, USA
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Lal AA, Hughes MA, Oliveira DA, Nelson C, Bloland PB, Oloo AJ, Hawley WE, Hightower AW, Nahlen BL, Udhayakumar V. Identification of T-cell determinants in natural immune responses to the Plasmodium falciparum apical membrane antigen (AMA-1) in an adult population exposed to malaria. Infect Immun 1996; 64:1054-9. [PMID: 8641760 PMCID: PMC173881 DOI: 10.1128/iai.64.3.1054-1059.1996] [Citation(s) in RCA: 44] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023] Open
Abstract
AMA-1 of Plasmodium falciparum is a promising candidate antigen in malaria vaccine development. In this study, we have mapped the immunodominant T-cell determinants in this antigen by using synthetic peptides. From the amphipathic scores, 17 putative T-cell determinants were identified. Nine of the 17 peptides complementary to the putative T-cell determinants induced proliferation of peripheral blood mononuclear cells (PBMC) from Kenyan residents who had lifelong exposure to malaria; none of these peptides induced proliferation of PBMC from donors who were not previously exposed to malaria. This indicates that AMA-1 peptides were stimulating T cells that were previously primed by prior exposure to P. falciparum. Many positive responders showed reactivity to more than one peptide, and some of the potent proliferative T epitopes were found to be localized in the highly conserved regions of AMA-1, suggesting that it may be possible to induce T-cell memory that can recognize different variant forms of the parasite. This information on the natural immune responses against the AMA-1 vaccine antigen in clinically immune adults will be helpful in the development of an AMA-1 antigen-based malaria vaccine and may also guide testing of AMA-1-based vaccine formulations.
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Affiliation(s)
- A A Lal
- Division of Parasitic Diseases, National Center for Infectious Diseases, Centers for Disease Control and Prevention, Public Health Service, U. S. Department of Health and Human Services, Atlanta, Georgia 30341-3717, USA
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Oliveira DA, Udhayakumar V, Bloland P, Shi YP, Nahlen BL, Oloo AJ, Hawley WE, Lal AA. Genetic conservation of the Plasmodium falciparum apical membrane antigen-1 (AMA-1). Mol Biochem Parasitol 1996; 76:333-6. [PMID: 8920023 DOI: 10.1016/0166-6851(95)02548-0] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- D A Oliveira
- Division of Parasitic Diseases, National Center for Infectious Diseases, Centers for Disease Control and Prevention, Chamblee, GA 30341, USA
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Oliveira DA, Holloway BP, Durigon EL, Collins WE, Lal AA. Polymerase chain reaction and a liquid-phase, nonisotopic hybridization for species-specific and sensitive detection of malaria infection. Am J Trop Med Hyg 1995; 52:139-44. [PMID: 7872440 DOI: 10.4269/ajtmh.1995.52.139] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023] Open
Abstract
In the present study, we describe a polymerase chain reaction (PCR)-based enzyme-linked immunosorbent assay for the detection of malaria infection. The target region of the 18S ribosomal DNA is amplified by a PCR using an 18S rRNA, genus-specific, biotinylated (5') and an unlabeled primer (3') pair. The detection probes are digoxigenin-labeled DNA oligonucleotides derived from species-specific rRNA sequences. The amplified fragments are allowed to hybridize with the species-specific, digoxigenin-labeled oligonucleotide probes. The oligo/DNA complex is allowed to bind onto streptavidin-coated microtiter plates, followed by incubation with a peroxidase-streptavidin conjugate and a colorimetric-peroxidase substrate. The resulting test demonstrated specificity for the four human Plasmodium species, and was able to detect a level of parasitemia of at least 0.0001% in a laboratory-induced P. falciparum infection in monkeys. This liquid hybridization assay is sensitive, specific, simple, and reliable, with wide applicability in epidemiologic studies, accurate detection of mixed infections, detection of low-level parasitemia, and evaluation of chemotherapy and vaccine efficacy.
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Affiliation(s)
- D A Oliveira
- Immunology Branch, National Center for Infectious Diseases, Atlanta, Georgia
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Koseki I, Rodrigues MA, Oliveira DA. [Swine cell sublines with different ploidies. II. Kinetics of population growth]. Arq Inst Biol (Sao Paulo) 1978; 45:243-9. [PMID: 754676] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Abstract
The growth rate and the protein level of two swine cell sublines, one of them with a diploid and the other with a tetraploied level of chromosomes, were studied during 96 hours at 37--38 degrees C. Both of them showed similar growth rates, although the cell number of the diploid cell subline had been higher than the tetraploid cell subline on the first observation at 24 hours. On the other hand the diploid cell subline showed lower protein level than the tetraploid cell subline.
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