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Mardilovich K, Naylor G, Julian L, Phinichkusolchit N, Keeshan K, Blyth K, Olson MF. Caspase-resistant ROCK1 expression prolongs survival of Eµ-Myc B cell lymphoma mice. Dis Model Mech 2024:dmm.050631. [PMID: 38616733 DOI: 10.1242/dmm.050631] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Accepted: 04/02/2024] [Indexed: 04/16/2024] Open
Abstract
Apoptosis is characterized by membrane blebbing and apoptotic body formation. Caspase cleavage of ROCK1 generates an active fragment that promotes actin-myosin mediated contraction and membrane blebbing during apoptosis. Expression of caspase-resistant non-cleavable ROCK1 (Rock1 NC) prolonged survival of mice that rapidly develop B cell lymphomas due to Eµ-Myc transgene expression. Eµ-Myc; Rock1 NC mice had significantly fewer bone marrow cells relative to Eµ-Myc mice expressing wild-type ROCK1 (Rock1 WT), which was associated with altered cell cycle profiles. Circulating macrophage numbers were lower in Eµ-Myc; Rock1 NC mice, but there were higher levels of bone marrow macrophages, consistent with spontaneous cell death in Eµ-Myc; Rock1 NC mice bone marrows being more inflammatory. Rock1 WT recipient mice transplanted with pre-neoplastic Eµ-Myc; Rock1 NC bone marrow cells survived longer than mice transplanted with Eµ-Myc; Rock1 WT cells, indicating that the survival benefit was intrinsic to the Eµ-Myc; Rock1 NC bone marrow cells. The results suggest that the apoptotic death of Eµ-Myc; Rock1 NC cells generates a proliferation-suppressive microenvironment in bone marrows that reduces cell numbers and prolongs B cell lymphoma mouse survival.
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Affiliation(s)
- Katerina Mardilovich
- Cancer Research UK Beatson Institute, Garscube Estate, Switchback Road, Glasgow, G61 1BD, UK
| | - Gregory Naylor
- Cancer Research UK Beatson Institute, Garscube Estate, Switchback Road, Glasgow, G61 1BD, UK
- School of Cancer Sciences, University of Glasgow, Glasgow, G16 1QH, UK
| | - Linda Julian
- Cancer Research UK Beatson Institute, Garscube Estate, Switchback Road, Glasgow, G61 1BD, UK
- School of Cancer Sciences, University of Glasgow, Glasgow, G16 1QH, UK
| | - Narisa Phinichkusolchit
- Cancer Research UK Beatson Institute, Garscube Estate, Switchback Road, Glasgow, G61 1BD, UK
- School of Cancer Sciences, University of Glasgow, Glasgow, G16 1QH, UK
| | - Karen Keeshan
- Wolfson Wohl Cancer Research Centre, Paul O'Gorman Leukemia Research Centre, School of Cancer Sciences, College of Medical Veterinary and Life Sciences, University of Glasgow, Glasgow, UK
| | - Karen Blyth
- Cancer Research UK Beatson Institute, Garscube Estate, Switchback Road, Glasgow, G61 1BD, UK
- School of Cancer Sciences, University of Glasgow, Glasgow, G16 1QH, UK
| | - Michael F Olson
- Toronto Metropolitan University, Department of Chemistry and Biology, 350 Victoria Street, Toronto ON, M5B 2K3, Canada
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McLaren AS, Spoor JA, Cartwright D, Naylor G, Barclay S, Priest M, Puttagunta S, Armstrong K, Ballantyne S, Stanley A, Jeffry Evans TR. Impact of the COVID-19 pandemic on patients with hepatocellular carcinoma in the West of Scotland: a cohort study. BMJ Open Gastroenterol 2023; 10:e001231. [PMID: 37989352 PMCID: PMC10660158 DOI: 10.1136/bmjgast-2023-001231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Accepted: 11/02/2023] [Indexed: 11/23/2023] Open
Abstract
OBJECTIVE The COVID-19 pandemic had an undoubted impact on the provision of elective and emergency cancer care, including the diagnosis and management of patients with hepatocellular carcinoma (HCC). Our aim was to determine the effects of the COVID-19 pandemic on patients with HCC in the West of Scotland. DESIGN This was a retrospective audit of a prospectively collated database of patients presented to the West of Scotland Multidisciplinary Team (MDT) between April and October 2020 (during the pandemic), comparing baseline demographics, characteristics of disease at presentation, diagnostic workup, treatment and outcomes with patients from April to October 2019 (pre pandemic). RESULTS There was a 36.5% reduction in new cases referred to the MDT during the pandemic. Patients presented at a significantly later Barcelona Cancer Liver Clinic stage (24% stage D during the pandemic, 9.5% pre pandemic, p<0.001) and with a significantly higher Child-Pugh Score (46% Child-Pugh B/C during the pandemic vs 27% pre pandemic, p<0.001). We observed a reduction in overall survival (OS) among all patients with a median OS during the pandemic of 6 months versus 17 months pre pandemic (p=0.048). CONCLUSION The impact of the COVID-19 pandemic is likely to have contributed to a reduction in the presentation of new cases and survival among patients with HCC in the West of Scotland. The reason for this is likely multifactorial, but disruption of standard care is likely to have played a significant role. Resources should be provided to address the backlog and ensure there are robust investigation and management pathways going forward.
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Affiliation(s)
- Alistair Stewart McLaren
- School of Cancer Sciences, College of Medical Veterinary and Life Sciences, University of Glasgow, Glasgow, UK
- CRUK Scotland Institute, Glasgow, UK
| | - Johannes A Spoor
- Department of Gastroenterology, Glasgow Royal Infirmary, Glasgow, UK
| | - Douglas Cartwright
- Gastrointestinal Cancers, Beatson West of Scotland Cancer Centre, Glasgow, UK
| | - Gregory Naylor
- Gastrointestinal Cancers, Beatson West of Scotland Cancer Centre, Glasgow, UK
| | | | - Matthew Priest
- Department of Gastroenterology, Queen Elizabeth University Hospital, Glasgow, UK
| | | | - Kirsty Armstrong
- Department of Radiology, NHS Greater Glasgow and Clyde, Glasgow, UK
| | | | - Adrian Stanley
- Department of Gastroenterology, Glasgow Royal Infirmary, Glasgow, UK
| | - Thomas R Jeffry Evans
- Gastrointestinal Cancers, Beatson West of Scotland Cancer Centre, Glasgow, UK
- School of Cancer Sciences, University of Glasgow, Glasgow, UK
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Naylor G, Julian L, Watson-Bryce S, Mullin M, Nibbs RJ, Olson MF. Immunogenic Death of Hepatocellular Carcinoma Cells in Mice Expressing Caspase-Resistant ROCK1 Is Not Replicated by ROCK Inhibitors. Cancers (Basel) 2022; 14:cancers14235943. [PMID: 36497425 PMCID: PMC9740421 DOI: 10.3390/cancers14235943] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Revised: 11/25/2022] [Accepted: 11/30/2022] [Indexed: 12/03/2022] Open
Abstract
The morphological changes during apoptosis help facilitate "immunologically silent" cell death. Caspase cleavage of the ROCK1 kinase results in its activation, which drives the forceful contraction of apoptotic cells. We previously showed that when ROCK1 was mutated to render it caspase-resistant, there was greater liver damage and neutrophil recruitment after treatment with the hepatotoxin diethylnitrosamine (DEN). We now show that acute DEN-induced liver damage induced higher levels of pro-inflammatory cytokines/chemokines, indicative of immunogenic cell death (ICD), in mice expressing non-cleavable ROCK1 (ROCK1nc). Hepatocellular carcinoma (HCC) tumours in ROCK1nc mice had more neutrophils and CD8+ T cells relative to mice expressing wild-type ROCK1, indicating that spontaneous tumour cell death also was more immunogenic. Since ICD induction has been proposed to be tumour-suppressive, the effects of two distinct ROCK inhibitors on HCC tumours was examined. Both fasudil and AT13148 significantly decreased tumour numbers, areas and volumes, but neither resulted in greater numbers of neutrophils or CD8+ T cells to be recruited. In the context of acute DEN-induced liver damage, AT13148 inhibited the recruitment of dendritic, natural killer and CD8+ T cells to livers. These observations indicate that there is an important role for ROCK1 cleavage to limit immunogenic cell death, which was not replicated by systemic ROCK inhibitor administration. As a result, concomitant administration of ROCK inhibitors with cancer therapeutics would be unlikely to result in therapeutic benefit by inducing ICD to increase anti-tumour immune responses.
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Affiliation(s)
- Gregory Naylor
- Cancer Research UK Beatson Institute, Garscube Estate, Switchback Road, Glasgow G61 1BD, UK
- Institute of Cancer Sciences, University of Glasgow, Glasgow G12 8QQ, UK
| | - Linda Julian
- Cancer Research UK Beatson Institute, Garscube Estate, Switchback Road, Glasgow G61 1BD, UK
- Institute of Cancer Sciences, University of Glasgow, Glasgow G12 8QQ, UK
| | - Steven Watson-Bryce
- Cancer Research UK Beatson Institute, Garscube Estate, Switchback Road, Glasgow G61 1BD, UK
| | - Margaret Mullin
- Electron Microscopy Facility, School of Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK
| | - Robert J. Nibbs
- Institute of Infection, Immunity and Inflammation, School of Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK
| | - Michael F. Olson
- Department of Chemistry and Biology, Toronto Metropolitan University, 661 University Avenue Suite 1105, Toronto, ON M5G 1M1, Canada
- Correspondence:
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Vincent C, Allan S, Naylor G, Stephen R, Bray S, Thornton A, Kirk A. Fission chamber data acquisition system for neutron flux measurements on the Mega-Amp Spherical Tokamak Upgrade. Rev Sci Instrum 2022; 93:093509. [PMID: 36182454 DOI: 10.1063/5.0106725] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Accepted: 08/15/2022] [Indexed: 06/16/2023]
Abstract
Neutron flux measurements are important in fusion devices for both safety requirements and physics studies. A new system has been built for the Mega-Amp Spherical Tokamak Upgrade (MAST Upgrade) that provides neutron count, DC, and Campbell mode measurements for a 1 µs period at 1 MHz. The acquisition system uses a Red Pitaya board to sample current from two fission chambers mounted on the side of the MAST-U vessel. The system-on-chip design of the Zynq-7020 on the Red Pitaya also allows a web server implementation using Flask for data retrieval and diagnostic configuration over the MAST Upgrade network.
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Affiliation(s)
- C Vincent
- United Kingdom Atomic Energy Authority, Culham Centre for Fusion Energy, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - S Allan
- United Kingdom Atomic Energy Authority, Culham Centre for Fusion Energy, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - G Naylor
- United Kingdom Atomic Energy Authority, Culham Centre for Fusion Energy, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - R Stephen
- United Kingdom Atomic Energy Authority, Culham Centre for Fusion Energy, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - S Bray
- United Kingdom Atomic Energy Authority, Culham Centre for Fusion Energy, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - A Thornton
- United Kingdom Atomic Energy Authority, Culham Centre for Fusion Energy, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - A Kirk
- United Kingdom Atomic Energy Authority, Culham Centre for Fusion Energy, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
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Gallagher PF, Naylor G, Bashir S, Yan X, Burke D, Plummer ER, Evans TJ, Coyle VM, Clive S, McGuigan L, Heinzmann K, Halbert G, Veal G, Tiplady E, Barnett S, Yalla K, Brook S, Dobbs N, Wilson RH. A CRUK first-in-human phase I trial of LY3143921, a novel CDC7 inhibitor, in patients with advanced solid tumors. J Clin Oncol 2022. [DOI: 10.1200/jco.2022.40.16_suppl.3103] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
3103 Background: CDC7, a protein with key roles in regulating cell-cycle progression is often over-expressed in malignant cells, particularly those with TP53 mutations. LY3143921, an orally administered ATP-competitive CDC7 inhibitor, demonstrated favorable pre-clinical anti-cancer activity in colorectal cancer (CRC) and squamous non-small cell lung cancer (sqNSCLC), particularly in TP53 mutant models. Methods: Phase Ia (dose escalation) recruited patients (pts) with advanced solid tumors enriched for malignancies associated with TP53 mutation. Pts received LY3143921 OD or BD continuously on a 21-day schedule, using an accelerated 3+3 escalation design, starting at 30 mg OD. Phase Ib recruited pts with CRC or sqNSCLC treated continuously at RP2D, or pts with other advanced tumors treated at RP2D on days 1-3 every 7 days. Radiological assessment was performed every 2 cycles initially. Pts in phase Ib could consent to pre- and on-treatment skin +/- tumor biopsies. Primary objectives: assess safety/tolerability and determine MTD and RP2D of LY3143921. Secondary objectives: evaluate preliminary efficacy and pharmacokinetic (PK) profile of LY3143921. Exploratory objective: correlate efficacy to baseline molecular/genetic alterations, including TP53 mutation and measure markers including pMCM2 in pre- and on- treatment tumor and skin samples. Results: 68 pts were recruited and 67 treated (38 phase Ia, 29 phase Ib). Most frequent drug-related CTCAEs (all grades): nausea (75%), orthostatic hypotension (50%), vomiting (47%), fatigue (45%) & diarrhea (44%). Grade 3-4 LY3143921 related AEs occurred in 17 pts. In phase Ia 8 DLTs occurred in 5 pts (G3 nausea, vomiting, fatigue & hyponatraemia and G2 diarrhea, anorexia & lethargy). RP2D was 360 mg BD (continuous non-fasted dosing schedule). 37 pts were evaluable for radiological response with no complete or partial responses seen, and stable disease (SD) was observed in 24 pts (65%). In phase Ia 3 pts achieved long term SD of 1, 2.5 and 3+ years duration. For evaluable pts treated in phase Ib, SD was seen in 8/12 CRC pts, 1/2 sqNSCLC pts and 2/2 pts treated with the intermittent schedule (median duration 15 weeks, range 6-18+). 2 pts remain on-study. Recruitment ceased due to lack of radiological response according to RECIST. Dose-dependent increases in LY3143921 exposure (Cmax & AUC0-24) were seen. IHC analyses of skin biopsies demonstrated reductions in pMCM2, indicating on-target activity of LY3143921. Pre-clinical testing of combination with standard of care agents is ongoing. Additional PD and PK data will be presented. Conclusions: LY3143921 is well tolerated, exhibits dose-dependent increases in plasma exposure and demonstrates evidence of target inhibition. Significant monotherapy clinical activity was not observed; further analyses should investigate potential predictive response biomarkers and rational combination approaches. Clinical trial information: NCT03096054.
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Affiliation(s)
| | - Gregory Naylor
- Beatson West of Scotland Cancer Centre, University of Glasgow, Glasgow, United Kingdom
| | - Saira Bashir
- Newcastle University Centre for Cancer, Newcastle University, Newcastle upon Tyne, United Kingdom
| | - Xiangfei Yan
- Edinburgh Cancer Centre, Western General Hospital, Edinburgh, United Kingdom
| | - David Burke
- Queen's University Belfast, Belfast, United Kingdom
| | - Elizabeth Ruth Plummer
- Newcastle University Centre for Cancer, Newcastle University, Newcastle upon Tyne, United Kingdom
| | - T.R. Jeffry Evans
- Beatson West of Scotland Cancer Centre, University of Glasgow, Glasgow, United Kingdom
| | | | - Sally Clive
- Edinburgh Cancer Centre, Western General Hospital, Edinburgh, United Kingdom
| | - Lesley McGuigan
- Centre for Drug Development, Cancer Research UK, London, United Kingdom
| | - Kathrin Heinzmann
- Centre for Drug Development, Cancer Research UK, London, United Kingdom
| | - Gavin Halbert
- CRUK Formulation Unit, University of Strathclyde, Glasgow, United Kingdom
| | - Gareth Veal
- Newcastle University Centre for Cancer, Newcastle University, Newcastle upon Tyne, United Kingdom
| | - Eleanor Tiplady
- Translational Pharmacology Lab, University of Glasgow, Glasgow, United Kingdom
| | - Shelby Barnett
- Newcastle University Centre for Cancer, Newcastle University, Newcastle upon Tyne, United Kingdom
| | - Krishna Yalla
- Translational Pharmacology Lab, University of Glasgow, Glasgow, United Kingdom
| | - Sue Brook
- Centre for Drug Development, Cancer Research UK, London, United Kingdom
| | - Nicola Dobbs
- Centre for Drug Development, Cancer Research UK, London, United Kingdom
| | - Richard H. Wilson
- Beatson West of Scotland Cancer Centre, University of Glasgow, Glasgow, United Kingdom
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Naylor G, McLaren A, Graham J, Evans TJ. Treatment of hepatocellular carcinoma with tyrosine kinase inhibitors: Real-world outcomes from the West of Scotland. J Clin Oncol 2022. [DOI: 10.1200/jco.2022.40.4_suppl.390] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
390 Background: Sorafenib, lenvatinib and regorafenib have proven efficacy in patients with HCC in randomised clinical trials. First line sorafenib significantly improves overall survival (OS) and disease control rates vs. placebo (SHARP) whilst lenvatinib (REFLECT) is non-inferior to sorafenib in terms of OS. Second line regorafenib improves OS versus placebo (RESORCE). Real world outcomes are often inferior to randomised controlled trial data. Consequently we investigated the outcomes of real world patients with HCC treated with multi-kinase inhibitors in our regional tertiary-referral centre. Methods: All patients with advanced HCC treated with sorafenib, lenvatinib or regorafenib as monotherapy from 4 December 2015 to 16 September 2020 were included. The Information Governance (Caldicott) guardian approved access to patients records. Median OS (mOS) and treatment duration (mDoT) were calculated using Kaplan-Meier estimate; baseline patient characteristics and information on dosing regimen, dose interruptions and modifications, were also collected. Results: The SHARP trial achieved mOS and mDoT of 10.7 and 5.3 months. 26% required dose reductions and 44% dose interruptions. Our patients achieved mOS of 7.98 and mDoT 2.62 months; 35% required a dose reduction and 48% a dose interruption. Mean daily dose (MDD) was not given in SHARP but was 663.8mg in REFLECT; 728mg sorafenib was achieved in West of Scotland (WOS). In REFLECT, lenvatinib patients had mOS and mDOT of 13.6 and 5.7 months; our patients had a mOS of 9.55 and mDoT of 3.68 comparatively. 37% and 40% had dose reductions and interruptions in REFLECT vs. 50% and 44% in WOS. Our patients had a MDD of 10.9 mg (12mg/day) and 6.88mg (8mg/day) lenvatinib vs. 10.5mg and 7.0mg in REFLECT. In RESORCE, mOS and mDOT of 10.6 and 3.6 months was acheived in regorafenib patients vs. 9.52 and 3.42 months in WOS. 68% needed drug interruption or reduction vs. 53% in WOS and MDD of regorafenib was 144·1mg vs. 148.3mg in our population. Conclusions: Consistent with other real world experiences our data demonstrate reduced mOS and mDoT times compared to trials. This is despite maintaining good dose intensity. On average, mOS was 2.6 months less in our population vs. trial data. This may be explained by etiological differences of underlying liver disease or treatment of less highly selected patients. Our patients tended to be older, have poorer PS and Child Pugh scores compared with trials. Our data lack control arms, preventing interpretation of whether improved survival outcomes over placebo are maintained. Interestingly our data mirror the results of REFLECT where lenvatinib treatment was maintained for longer periods compared to sorafenib, despite higher numbers of dose interruptions. Our data also confirm that observed within RESORCE where, remarkably, patients treated with second line regorafenib achieved mOS similar to those treated in the first line setting.
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Affiliation(s)
| | | | - Janet Graham
- Beatson West of Scotland Cancer Centre, Glasgow, United Kingdom
| | - T.R. Jeffry Evans
- University of Glasgow, Beatson West of Scotland Cancer Centre, Glasgow, United Kingdom
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Julian L, Naylor G, Wickman GR, Rath N, Castino G, Stevenson D, Bryson S, Munro J, McGarry L, Mullin M, Rice A, Del Río Hernández A, Olson MF. Defective apoptotic cell contractility provokes sterile inflammation, leading to liver damage and tumour suppression. eLife 2021; 10:e61983. [PMID: 33871359 PMCID: PMC8087448 DOI: 10.7554/elife.61983] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2020] [Accepted: 04/17/2021] [Indexed: 01/20/2023] Open
Abstract
Apoptosis is characterized by profound morphological changes, but their physiological purpose is unknown. To characterize the role of apoptotic cell contraction, ROCK1 was rendered caspase non-cleavable (ROCK1nc) by mutating aspartate 1113, which revealed that ROCK1 cleavage was necessary for forceful contraction and membrane blebbing. When homozygous ROCK1nc mice were treated with the liver-selective apoptotic stimulus of diethylnitrosamine, ROCK1nc mice had more profound liver damage with greater neutrophil infiltration than wild-type mice. Inhibition of the damage-associated molecular pattern protein HMGB1 or signalling by its cognate receptor TLR4 lowered neutrophil infiltration and reduced liver damage. ROCK1nc mice also developed fewer diethylnitrosamine-induced hepatocellular carcinoma (HCC) tumours, while HMGB1 inhibition increased HCC tumour numbers. Thus, ROCK1 activation and consequent cell contraction are required to limit sterile inflammation and damage amplification following tissue-scale cell death. Additionally, these findings reveal a previously unappreciated role for acute sterile inflammation as an efficient tumour-suppressive mechanism.
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Affiliation(s)
- Linda Julian
- Cancer Research United Kingdom Beatson Institute, Garscube EstateGlasgowUnited Kingdom
- Institute of Cancer Sciences, University of GlasgowGlasgowUnited Kingdom
| | - Gregory Naylor
- Cancer Research United Kingdom Beatson Institute, Garscube EstateGlasgowUnited Kingdom
- Institute of Cancer Sciences, University of GlasgowGlasgowUnited Kingdom
| | - Grant R Wickman
- Cancer Research United Kingdom Beatson Institute, Garscube EstateGlasgowUnited Kingdom
- Institute of Cancer Sciences, University of GlasgowGlasgowUnited Kingdom
| | - Nicola Rath
- Cancer Research United Kingdom Beatson Institute, Garscube EstateGlasgowUnited Kingdom
| | - Giovanni Castino
- Department of Chemistry and Biology, Ryerson UniversityTorontoCanada
| | - David Stevenson
- Cancer Research United Kingdom Beatson Institute, Garscube EstateGlasgowUnited Kingdom
| | - Sheila Bryson
- Cancer Research United Kingdom Beatson Institute, Garscube EstateGlasgowUnited Kingdom
| | - June Munro
- Cancer Research United Kingdom Beatson Institute, Garscube EstateGlasgowUnited Kingdom
| | - Lynn McGarry
- Cancer Research United Kingdom Beatson Institute, Garscube EstateGlasgowUnited Kingdom
| | - Margaret Mullin
- Electron Microscopy Facility, School of Life Sciences, University of GlasgowGlasgowUnited Kingdom
| | - Alistair Rice
- Cellular and Molecular Biomechanics Laboratory, Department of Bioengineering, Imperial College LondonLondonUnited Kingdom
| | - Armandodel Del Río Hernández
- Cellular and Molecular Biomechanics Laboratory, Department of Bioengineering, Imperial College LondonLondonUnited Kingdom
| | - Michael F Olson
- Department of Chemistry and Biology, Ryerson UniversityTorontoCanada
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Taylor MA, Blanshard RJ, Naylor G, Penny HA, Mooney PD, Sanders DS. Do gastroenterologists have medical inertia towards coeliac disease? A UK multicentre secondary care study. BMJ Open Gastroenterol 2021; 8:e000544. [PMID: 33455912 PMCID: PMC7813426 DOI: 10.1136/bmjgast-2020-000544] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Revised: 12/06/2020] [Accepted: 12/16/2020] [Indexed: 01/02/2023] Open
Abstract
OBJECTIVE This study aimed to assess if there is secondary care medical inertia towards coeliac disease (CD). DESIGN Group (1): Time from primary care presentation to diagnostic endoscopy was quantified in 151 adult patients with a positive endomysial antibody test and compared with 92 adult patients with histologically proven inflammatory bowel disease (IBD). Group (2): Across four hospitals, duodenal biopsy reports for suspected CD were reviewed (n=1423). Group (3): Clinical complexity was compared between known CD (n=102) and IBD (n=99) patients at their respective follow-up clinic appointments. Group (4): 50 gastroenterologists were questioned about their perspective on CD and IBD. RESULTS Group (1): Suspected coeliac patients waited significantly longer for diagnostic endoscopy following referral (48.5 (28-89) days) than suspected patients with IBD (34.5 (18-70) days; p=0.003). Group (2): 1423 patients underwent diagnostic endoscopy for possible CD, with only 40.0% meeting guidelines to take four biopsies. Increased diagnosis of CD occurred if guidelines were followed (10.1% vs 4.6% p<0.0001). 12.4% of newly diagnosed CD patients had at least one non-diagnostic gastroscopy in the 5 years prior to diagnosis. Group (4): 32.0% of gastroenterologists failed to identify that CD has greater prevalence in adults than IBD. Moreover, 36.0% of gastroenterologists felt that doctors were not required for the management of CD. CONCLUSION Prolonged waiting times for endoscopy and inadequacies in biopsy technique were demonstrated suggesting medical inertia towards CD. However, this has to be balanced against rationalising care accordingly. A Coeliac UK National Patient Charter may standardise care across the UK.
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Affiliation(s)
| | - Rebecca J Blanshard
- Academic Unit of Gastroenterology, Royal Hallamshire Hospital, Sheffield, Sheffield, UK
- The University of Sheffield, Sheffield, Sheffield, UK
| | - Gregory Naylor
- Chesterfield Royal Hospital NHS Foundation Trust, Chesterfield, Derbyshire, UK
| | - Hugo A Penny
- Academic Unit of Gastroenterology, Royal Hallamshire Hospital, Sheffield, Sheffield, UK
| | - Peter D Mooney
- Department of Gastroenterology, Northern General Hospital, Sheffield, Sheffield, UK
- Department of Gastroenterology, Leeds Teaching Hospitals NHS Trust, Leeds, Leeds, UK
| | - David S Sanders
- The University of Sheffield Medical School, Sheffield, UK
- Academic Unit of Gastroenterology, Royal Hallamshire Hospital, Sheffield, Sheffield, UK
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Graham JS, Saunders J, Naylor G, Crearie C, Campbell W, Abdullah T, Dunn MG, MacLeod NJ, McDonald A, McGaffin G, McKillop AJ, Miller L, Mohammed N, Othman A, Radford L, Smith K, Storey DJ, Williams N, Westwood P, Wilson RH. Prospective DPYD testing and dose adjustment in colorectal cancer patients prior to fluoropyrimidine-based chemotherapy: Experience in a regional cancer center. J Clin Oncol 2020. [DOI: 10.1200/jco.2020.38.4_suppl.93] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
93 Background: The fluoropyrimidines (FP), 5-Fluorouracil (5-FU) and capecitabine are a mainstay of colorectal cancer (CRC) treatment. Dihydropyrimidine dehydrogenase (DPYD), an enzyme encoded by the DPYD gene, is the initial and rate-limiting step in pyrimidine catabolism, deactivating over 80% of 5-FU. Approximately 5% of the population are deficient in DPYD and can develop severe or fatal FP toxicities. Currently, few national guidelines recommend routine prospective DPYD testing. In July 2019, we commenced a 6 month prospective pilot, testing DPYD status of all CRC patients undergoing first FP treatment in a large regional cancer centre. Methods: All CRC patients eligible for first exposure to FP are tested using a rapid molecular assay screening for five SNPs (detects 70% of DPYD mutations) and we will present data on prevalence of each. We will use electronic chemotherapy prescribing records (July 19-Jan 20) to collect information on dose modifications and toxicities. Once the pilot is completed we will perform a cost-effectiveness analysis. Results: Data from the first 3 months of this pilot have been reviewed and 201 patients have been tested with 15 heterozygotes identified, of which 2 had more than one mutation. No homozygotes were found. All heterozygote patients are started with a dose reduction (or have alternative therapy). One patient treated at 50% dose was hospitalised with several grade 3 toxicities despite dose reduction. Two patients have had subsequent dose escalation (by 25%). Nine patients have received one dose reduced cycle without complication. Three patients are due to start dose-reduced treatment. Conclusions: Routine prospective testing of DPYD status in a large regional cancer centre is feasible and with a sufficiently swift result turnaround to permit up-front dose modification. Detailed toxicity analysis and cost-effectiveness data will be presented.
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Affiliation(s)
| | | | - Gregory Naylor
- University of Glasgow, Beatson West of Scotland Cancer Centre, Glasgow, United Kingdom
| | | | - Wendy Campbell
- Beatson West of Scotland Cancer Centre, Glasgow, United Kingdom
| | - Tareq Abdullah
- Beatson West of Scotland Cancer Centre, Glasgow, United Kingdom
| | - Mary G. Dunn
- Beatson West of Scotland Cancer Centre, Glasgow, United Kingdom
| | | | - Alec McDonald
- Beatson West of Scotland Cancer Centre, Glasgow, United Kingdom
| | | | | | - Laura Miller
- West of Scotland Genetics Services, Glasgow, United Kingdom
| | - Nazia Mohammed
- Beatson West of Scotland Cancer Centre, Glasgow, United Kingdom
| | - Aqilah Othman
- Beatson West of Scotland Cancer Centre, Glasgow, United Kingdom
| | - Liz Radford
- Beatson West of Scotland Cancer Centre, Glasgow, United Kingdom
| | - Karen Smith
- Beatson West of Scotland Cancer Centre, Glasgow, United Kingdom
| | | | - Nicola Williams
- Laboratory Medicine, Queen Elizabeth University Hospital, Glasgow, United Kingdom
| | - Paul Westwood
- Laboratory Medicine, Queen Elizabeth University Hospital Govan Road, Glasgow, United Kingdom
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10
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Vincent C, McCarthy W, Golfinopoulos T, LaBombard B, Sharples R, Lovell J, Naylor G, Hall S, Harrison J, Kuang AQ. The digital mirror Langmuir probe: Field programmable gate array implementation of real-time Langmuir probe biasing. Rev Sci Instrum 2019; 90:083504. [PMID: 31472602 DOI: 10.1063/1.5109834] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2019] [Accepted: 07/26/2019] [Indexed: 06/10/2023]
Abstract
High bandwidth, high spatial resolution measurements of electron temperature, density, and plasma potential are valuable for resolving turbulence in the boundary plasma of tokamaks. While conventional Langmuir probes can provide such measurements, either their temporal or spatial resolution is limited: the former by the sweep rate necessary for obtaining I-V characteristics and the latter by the need to use multiple electrodes, as is the case in triple and double probe configurations. The Mirror Langmuir Probe (MLP) bias technique overcomes these limitations by rapidly switching the voltage on a single electrode cycling between three bias states, each dynamically optimized for the local plasma conditions. The MLP system on Alcator C-Mod used analog circuitry to perform this function, measuring Te, VF, and Isat at 1.1 MSPS. Recently, a new prototype digital MLP controller has been implemented on a Red Pitaya Field Programmable Gate Array (FPGA) board which reproduces the functionality of the original controller and performs all data acquisition. There is also the potential to provide the plasma parameters externally for use with feedback control systems. The use of FPGA technology means the system is readily customizable at a fraction of the development time and implementation cost. A second Red Pitaya was used to test the MLP by simulating the current response of a physical probe using C-Mod experimental measurements. This project is available as a git repository to facilitate extensibility (e.g., real-time control outputs and more voltage states) and scalability through collaboration.
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Affiliation(s)
- C Vincent
- Department of Physics, Durham University, South Road, Durham, DH1 3LE, United Kingdom
| | - W McCarthy
- Plasma Science and Fusion Centre, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA
| | - T Golfinopoulos
- Plasma Science and Fusion Centre, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA
| | - B LaBombard
- Plasma Science and Fusion Centre, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA
| | - R Sharples
- Department of Physics, Durham University, South Road, Durham, DH1 3LE, United Kingdom
| | - J Lovell
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - G Naylor
- United Kingdom Atomic Energy Authority, Culham Centre for Fusion Energy, Culham Science Centre, Abingdon, Oxon, OX14 3DB, United Kingdom
| | - S Hall
- United Kingdom Atomic Energy Authority, Culham Centre for Fusion Energy, Culham Science Centre, Abingdon, Oxon, OX14 3DB, United Kingdom
| | - J Harrison
- United Kingdom Atomic Energy Authority, Culham Centre for Fusion Energy, Culham Science Centre, Abingdon, Oxon, OX14 3DB, United Kingdom
| | - A Q Kuang
- Plasma Science and Fusion Centre, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA
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11
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Gallagher PF, Coyle V, Evans TJ, Plummer ER, Clive S, McGuigan L, Roxburgh P, Haris NM, Symeonides SN, Naylor G, Bashir S, Stanley B, Godfrey L, Elliott M, Halbert G, Brook S, Dobbs N, Wilson RH. A CRUK first-in-human phase I trial of a CDC7 Inhibitor, LY3143921 hydrate, in patients with advanced solid tumors. J Clin Oncol 2019. [DOI: 10.1200/jco.2019.37.15_suppl.tps3167] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
TPS3167 Background: CDC7 is a protein with key roles in DNA replication initiation, the intra-S-phase checkpoint and M-phase completion. CDC7 is over-expressed in malignant compared to non-malignant cells, particularly those with TP53 mutations, making it an attractive therapeutic target. LY3143921 hydrate is an orally administered ATP-competitive CDC7 inhibitor. Pre-clinical studies in colorectal cancer (CRC) and squamous non-small cell lung cancer (sqNSCLC) demonstrate favourable anti-cancer activity, particularly in squamous NSCLC and in CRC with TP53 null and missense mutations. We hypothesise that solid tumours mutated in TP53 will be sensitive to LY3143921 therapy. Methods: This is a first-in-human, phase I trial of LY3143921 hydrate (LY3143921) monotherapy given twice daily, continuously on a 21 day schedule until disease progression, patient (pt) withdrawal or unacceptable toxicity (NCT03096054). Eligible pts have histologically proven advanced/metastatic solid tumours for which no further standard therapy exists and WHO PS 0-1. Pts have regular clinical assessment and tumour imaging every 2 cycles. Phase Ia (dose escalation) is recruiting in a 3+3 design following 3 initial single patient cohorts (starting dose 30 mg OD), enriching for patients with malignancies associated with p53 mutations (CRC, sqNSCLC, high grade serous ovarian, squamous cell oesophageal, squamous cell head & neck, urothelial, pancreatic and triple negative breast cancer). Recruitment to cohort 6 (180 mg BD) is ongoing. On determination of the maximum tolerated dose (MTD) and recommended phase II dose and schedule (RP2D), 2 expansion cohorts (≤ 25 pts each) of patients with CRC and sqNSCLC will be evaluated. Primary objectives: assess safety and tolerability of LY3143921, determine MTD and RP2D. Secondary objectives: evaluate preliminary efficacy and PK profile of LY3143921. All pts will have archival tumour tissue retrospectively analysed, while patients in phase Ib will also have pre- and on-treatment tumour biopsies. Evaluation of potential predictive and pharmacodynamic biomarkers including p53 mutations, phosphorylated MCM2, cyclin B1 and molecular subgroups of target tumours will be included. Clinical trial information: NCT03096054.
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Affiliation(s)
| | | | - T.R. Jeffry Evans
- University of Glasgow, Beatson West of Scotland Cancer Centre, Glasgow, United Kingdom
| | | | - Sally Clive
- Edinburgh Cancer Centre, Western General Hospital, Edinburgh, United Kingdom
| | - Lesley McGuigan
- Centre for Drug Development, Cancer Research UK, London, United Kingdom
| | - Patricia Roxburgh
- University of Glasgow, Beatson West of Scotland Cancer Centre, Glasgow, United Kingdom
| | - Noor Md Haris
- Northern Centre for Cancer Care, Freeman Hospital, Newcastle upon Tyne, United Kingdom
| | | | - Gregory Naylor
- University of Glasgow, Beatson West of Scotland Cancer Centre, Glasgow, United Kingdom
| | - Saira Bashir
- Northern Centre for Cancer Care, Freeman Hospital, Newcastle upon Tyne, United Kingdom
| | - Barbara Stanley
- Edinburgh Cancer Centre, Western General Hospital, Edinburgh, United Kingdom
| | - Lisa Godfrey
- Centre for Drug Development, Cancer Research UK, London, United Kingdom
| | - Moira Elliott
- Centre for Drug Development, Cancer Research UK, London, United Kingdom
| | - Gavin Halbert
- Centre for Drug Development, Cancer Research UK, London, United Kingdom
| | - Sue Brook
- Centre for Drug Development, Cancer Research UK, London, United Kingdom
| | - Nicola Dobbs
- Centre for Drug Development, Cancer Research UK, London, United Kingdom
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12
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Unbekandt M, Belshaw S, Bower J, Clarke M, Cordes J, Crighton D, Croft DR, Drysdale MJ, Garnett MJ, Gill K, Gray C, Greenhalgh DA, Hall JAM, Konczal J, Lilla S, McArthur D, McConnell P, McDonald L, McGarry L, McKinnon H, McMenemy C, Mezna M, Morrice NA, Munro J, Naylor G, Rath N, Schüttelkopf AW, Sime M, Olson MF. Discovery of Potent and Selective MRCK Inhibitors with Therapeutic Effect on Skin Cancer. Cancer Res 2018; 78:2096-2114. [PMID: 29382705 PMCID: PMC5901721 DOI: 10.1158/0008-5472.can-17-2870] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2017] [Revised: 11/20/2017] [Accepted: 01/24/2018] [Indexed: 01/29/2023]
Abstract
The myotonic dystrophy-related Cdc42-binding kinases MRCKα and MRCKβ contribute to the regulation of actin-myosin cytoskeleton organization and dynamics, acting in concert with the Rho-associated coiled-coil kinases ROCK1 and ROCK2. The absence of highly potent and selective MRCK inhibitors has resulted in relatively little knowledge of the potential roles of these kinases in cancer. Here, we report the discovery of the azaindole compounds BDP8900 and BDP9066 as potent and selective MRCK inhibitors that reduce substrate phosphorylation, leading to morphologic changes in cancer cells along with inhibition of their motility and invasive character. In over 750 human cancer cell lines tested, BDP8900 and BDP9066 displayed consistent antiproliferative effects with greatest activity in hematologic cancer cells. Mass spectrometry identified MRCKα S1003 as an autophosphorylation site, enabling development of a phosphorylation-sensitive antibody tool to report on MRCKα status in tumor specimens. In a two-stage chemical carcinogenesis model of murine squamous cell carcinoma, topical treatments reduced MRCKα S1003 autophosphorylation and skin papilloma outgrowth. In parallel work, we validated a phospho-selective antibody with the capability to monitor drug pharmacodynamics. Taken together, our findings establish an important oncogenic role for MRCK in cancer, and they offer an initial preclinical proof of concept for MRCK inhibition as a valid therapeutic strategy.Significance: The development of selective small-molecule inhibitors of the Cdc42-binding MRCK kinases reveals their essential roles in cancer cell viability, migration, and invasive character. Cancer Res; 78(8); 2096-114. ©2018 AACR.
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Affiliation(s)
- Mathieu Unbekandt
- Molecular Cell Biology Laboratory, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Simone Belshaw
- Drug Discovery Unit, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Justin Bower
- Drug Discovery Unit, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Maeve Clarke
- Drug Discovery Unit, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Jacqueline Cordes
- Drug Discovery Unit, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Diane Crighton
- Drug Discovery Unit, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Daniel R Croft
- Drug Discovery Unit, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Martin J Drysdale
- Drug Discovery Unit, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Mathew J Garnett
- Translational Cancer Genomics, Wellcome Trust Sanger Institute, Hinxton, United Kingdom
| | - Kathryn Gill
- Drug Discovery Unit, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Christopher Gray
- Drug Discovery Unit, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - David A Greenhalgh
- Section of Dermatology and Molecular Carcinogenesis, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, United Kingdom
| | - James A M Hall
- Translational Cancer Genomics, Wellcome Trust Sanger Institute, Hinxton, United Kingdom
| | - Jennifer Konczal
- Drug Discovery Unit, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Sergio Lilla
- Mass Spectrometry Facility, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Duncan McArthur
- Drug Discovery Unit, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Patricia McConnell
- Drug Discovery Unit, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Laura McDonald
- Drug Discovery Unit, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Lynn McGarry
- Screening Facility, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Heather McKinnon
- Drug Discovery Unit, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Carol McMenemy
- Section of Dermatology and Molecular Carcinogenesis, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, United Kingdom
| | - Mokdad Mezna
- Drug Discovery Unit, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Nicolas A Morrice
- Mass Spectrometry Facility, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - June Munro
- Molecular Cell Biology Laboratory, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Gregory Naylor
- Molecular Cell Biology Laboratory, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Nicola Rath
- Molecular Cell Biology Laboratory, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | | | - Mairi Sime
- Drug Discovery Unit, Cancer Research UK Beatson Institute, Glasgow, United Kingdom
| | - Michael F Olson
- Molecular Cell Biology Laboratory, Cancer Research UK Beatson Institute, Glasgow, United Kingdom.
- Institute of Cancer Sciences, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, United Kingdom
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13
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Brunner KJ, Chorley JC, Dipper NA, Naylor G, Sharples RM, Taylor G, Thomas DA, Vann RGL. Modifications to the synthetic aperture microwave imaging diagnostic. Rev Sci Instrum 2016; 87:11E129. [PMID: 27910342 DOI: 10.1063/1.4961283] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
The synthetic aperture microwave imaging diagnostic has been operating on the MAST experiment since 2011. It has provided the first 2D images of B-X-O mode conversion windows and showed the feasibility of conducting 2D Doppler back-scattering experiments. The diagnostic heavily relies on field programmable gate arrays to conduct its work. Recent successes and newly gained experience with the diagnostic have led us to modify it. The enhancements will enable pitch angle profile measurements, O and X mode separation, and the continuous acquisition of 2D DBS data. The diagnostic has also been installed on the NSTX-U and is acquiring data since May 2016.
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Affiliation(s)
- K J Brunner
- Department of Physics-Durham University, South Road, Durham DH1 3LE, United Kingdom
| | - J C Chorley
- Department of Physics-Durham University, South Road, Durham DH1 3LE, United Kingdom
| | - N A Dipper
- Department of Physics-Durham University, South Road, Durham DH1 3LE, United Kingdom
| | - G Naylor
- Culham Centre for Fusion Energy, Culham Science Centre, Abingdon OX14 3DB, United Kingdom
| | - R M Sharples
- Department of Physics-Durham University, South Road, Durham DH1 3LE, United Kingdom
| | - G Taylor
- Princeton Plasma Physics Laboratory, 100 Stellarator Road, Princeton, New Jersey 08540, USA
| | - D A Thomas
- Culham Centre for Fusion Energy, Culham Science Centre, Abingdon OX14 3DB, United Kingdom
| | - R G L Vann
- York Plasma Institute-University of York, Heslington, York YO10 5DQ, United Kingdom
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14
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Bohm P, Aftanas M, Bilkova P, Stefanikova E, Mikulin O, Melich R, Janky F, Havlicek J, Sestak D, Weinzettl V, Stockel J, Hron M, Panek R, Scannell R, Frassinetti L, Fassina A, Naylor G, Walsh MJ. Edge Thomson scattering diagnostic on COMPASS tokamak: installation, calibration, operation, improvements. Rev Sci Instrum 2014; 85:11E431. [PMID: 25430338 DOI: 10.1063/1.4893995] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The core Thomson scattering diagnostic (TS) on the COMPASS tokamak was put in operation and reported earlier. Implementation of edge TS, with spatial resolution along the laser beam up to ∼1/100 of the tokamak minor radius, is presented now. The procedure for spatial calibration and alignment of both core and edge systems is described. Several further upgrades of the TS system, like a triggering unit and piezo motor driven vacuum window shutter, are introduced as well. The edge TS system, together with the core TS, is now in routine operation and provides electron temperature and density profiles.
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Affiliation(s)
- P Bohm
- Institute of Plasma Physics ASCR, Za Slovankou 1782/3, 18200 Prague, Czech Republic
| | - M Aftanas
- Institute of Plasma Physics ASCR, Za Slovankou 1782/3, 18200 Prague, Czech Republic
| | - P Bilkova
- Institute of Plasma Physics ASCR, Za Slovankou 1782/3, 18200 Prague, Czech Republic
| | - E Stefanikova
- Institute of Plasma Physics ASCR, Za Slovankou 1782/3, 18200 Prague, Czech Republic
| | - O Mikulin
- Institute of Plasma Physics ASCR, Za Slovankou 1782/3, 18200 Prague, Czech Republic
| | - R Melich
- Institute of Plasma Physics ASCR, Za Slovankou 1782/3, 18200 Prague, Czech Republic
| | - F Janky
- Institute of Plasma Physics ASCR, Za Slovankou 1782/3, 18200 Prague, Czech Republic
| | - J Havlicek
- Institute of Plasma Physics ASCR, Za Slovankou 1782/3, 18200 Prague, Czech Republic
| | - D Sestak
- Institute of Plasma Physics ASCR, Za Slovankou 1782/3, 18200 Prague, Czech Republic
| | - V Weinzettl
- Institute of Plasma Physics ASCR, Za Slovankou 1782/3, 18200 Prague, Czech Republic
| | - J Stockel
- Institute of Plasma Physics ASCR, Za Slovankou 1782/3, 18200 Prague, Czech Republic
| | - M Hron
- Institute of Plasma Physics ASCR, Za Slovankou 1782/3, 18200 Prague, Czech Republic
| | - R Panek
- Institute of Plasma Physics ASCR, Za Slovankou 1782/3, 18200 Prague, Czech Republic
| | - R Scannell
- CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - L Frassinetti
- School of Electrical Engineering, Division of Fusion Plasma Physics, KTH Royal Institute of Technology, SE-100 44 Stockholm, Sweden
| | - A Fassina
- Consorzio RFX, Corso Stati Uniti, 4-35127 Padua, Italy
| | - G Naylor
- CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - M J Walsh
- ITER Organization, Route de Vinon-sur-Verdon, CS 90 046, 13067 St Paul lez Durance, France
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15
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O'Gorman T, Naylor G, Scannell R, Cunningham G, Brunner KJ, Martin R, Croft D. Design of a real-time two-color interferometer for MAST Upgrade. Rev Sci Instrum 2014; 85:11D861. [PMID: 25430274 DOI: 10.1063/1.4894394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
A single chord two-color CO2/HeNe (10.6/0.633 μm) heterodyne laser interferometer has been designed to measure the line integral electron density along the mid-plane of the MAST Upgrade tokamak, with a typical error of 1 × 10(18) m(-3) (∼2° phase error) at 4 MHz temporal resolution. To ensure this diagnostic system can be restored from any failures without stopping MAST Upgrade operations, it has been located outside of the machine area. The final design and initial testing of this system, including details of the optics, vibration isolation, and a novel phase detection scheme are discussed in this paper.
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Affiliation(s)
- T O'Gorman
- CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - G Naylor
- CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - R Scannell
- CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - G Cunningham
- CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - K J Brunner
- Centre for Advanced Instrumentation, Department of Physics, Durham University, DH1 3LE, United Kingdom
| | - R Martin
- CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - D Croft
- CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
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16
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Williams A, Candish C, Ayrton C, Naylor G, Lam S, Counsell R. Reducing the Door to Needle Time for Antibiotics in Suspected Neutropenic Sepsis using a Dedicated Clinical Pathway. Clin Oncol (R Coll Radiol) 2014. [DOI: 10.1016/j.clon.2014.04.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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17
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Mikulin O, Hron M, Bohm P, Naylor G, Bilkova P, Janky F, Salasek J, Panek R. Timing and triggering of the Thomson scattering diagnostics on the COMPASS tokamak. Fusion Engineering and Design 2014. [DOI: 10.1016/j.fusengdes.2014.03.031] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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18
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Huang B, Vann R, Freethy S, Myers R, Naylor G, Sharples R, Shevchenko V. FPGA-based embedded Linux technology in fusion: The MAST microwave imaging system. Fusion Engineering and Design 2012. [DOI: 10.1016/j.fusengdes.2012.06.004] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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19
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O'Gorman T, Naylor G, Gibson KJ, Huang B, McArdle GJ, Scannell R, Shibaev S, Snape JA, Thomas-Davies N. A field programmable gate array unit for the diagnosis and control of neoclassical tearing modes on MAST. Rev Sci Instrum 2012; 83:10E312. [PMID: 23126972 DOI: 10.1063/1.4732057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
A real-time system has been developed to trigger both the MAST Thomson scattering (TS) system and the plasma control system on the phase and amplitude of neoclassical tearing modes (NTMs), extending the capabilities of the original system. This triggering system determines the phase and amplitude of a given NTM using magnetic coils at different toroidal locations. Real-time processing of the raw magnetic data occurs on a low cost field programmable gate array (FPGA) based unit which permits triggering of the TS lasers on specific amplitudes and phases of NTM evolution. The MAST plasma control system can receive a separate trigger from the FPGA unit that initiates a vertical shift of the MAST magnetic axis. Such shifts have fully removed m∕n = 2∕1 NTMs instabilities on a number of MAST discharges.
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Affiliation(s)
- T O'Gorman
- York Plasma Institute, Department of Physics, University of York, York, United Kingdom.
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20
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Knight T, Ronimus R, Dey D, Tootill C, Naylor G, Evans P, Molano G, Smith A, Tavendale M, Pinares-Patiño C, Clark H. Chloroform decreases rumen methanogenesis and methanogen populations without altering rumen function in cattle. Anim Feed Sci Technol 2011. [DOI: 10.1016/j.anifeedsci.2011.04.059] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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21
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Chapman IT, Scannell R, Cooper WA, Graves JP, Hastie RJ, Naylor G, Zocco A. Magnetic reconnection triggering magnetohydrodynamic instabilities during a sawtooth crash in a Tokamak plasma. Phys Rev Lett 2010; 105:255002. [PMID: 21231596 DOI: 10.1103/physrevlett.105.255002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2010] [Indexed: 05/30/2023]
Abstract
Thomson scattering measurements with subcentimeter spatial resolution have been made during a sawtooth crash in a Mega Ampere Spherical Tokamak fusion plasma. The unparalleled resolution of the temperature profile has shed new light on the mechanisms that underlie the sawtooth. As magnetic reconnection occurs, the temperature gradient at the island boundary increases. The increased local temperature gradient is sufficient to make the helical core unstable to ideal magnetohydrodynamic instabilities, thought to be responsible for the rapidity of the collapse.
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Affiliation(s)
- I T Chapman
- EURATOM/CCFE Fusion Association, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
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22
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O'Gorman T, Mc Carthy PJ, Prunty S, Walsh MJ, Dunstan MR, Huxford RB, Naylor G, Maguet E, Scannell R, Shibaev S. Design and implementation of a full profile sub-cm ruby laser based Thomson scattering system for MAST. Rev Sci Instrum 2010; 81:123508. [PMID: 21198024 DOI: 10.1063/1.3511556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
A major upgrade to the ruby Thomson scattering (TS) system has been designed and implemented on the Mega-ampere spherical tokamak (MAST). MAST is equipped with two TS systems, a Nd:YAG laser system and a ruby laser system. Apart from common collection optics each system provides independent measurements of the electron temperature and density profile. This paper focuses on the recent upgrades to the ruby TS system. The upgraded ruby TS system measures 512 points across the major radius of the MAST vessel. The ruby laser can deliver one 10 J 40 ns pulse at 1 Hz or two 5 J pulses separated by 100-800 μs. The Thomson scattered light is collected at F/15 over 1.4 m. This system can resolve small (7 mm) structures at 200 points in both the electron temperature and density channels at high optical contrast; ∼50% modulated transfer function. The system is fully automated for each MAST discharge and requires little adjustment. The estimated measurement error for a 7 mm radial point is <4% of T(e) and <3% of n(e) in the range of 40 eV to 2 keV, for a density of n(e)=2×10(19) m(-3). The photon statistics at lower density can be increased by binning in the radial direction as desired. A new intensified CCD camera design allows the ruby TS system to take two snapshots separated with a minimum time of 230 μs. This is exploited to measure two density and temperature profiles or to measure the plasma background light.
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Affiliation(s)
- T O'Gorman
- Department of Physics, University College Cork, Association Euratom-DCU, Cork, Ireland
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23
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Scannell R, Walsh MJ, Dunstan MR, Figueiredo J, Naylor G, O'Gorman T, Shibaev S, Gibson KJ, Wilson H. A 130 point Nd:YAG Thomson scattering diagnostic on MAST. Rev Sci Instrum 2010; 81:10D520. [PMID: 21033875 DOI: 10.1063/1.3460628] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
A Thomson scattering diagnostic designed to measure both edge and core physics has been implemented on MAST. The system uses eight Nd:YAG lasers, each with a repetition rate of 30 Hz. The relative and absolute timing of the lasers may be set arbitrarily to produce fast bursts of measurements to suit the time evolution of the physics being studied. The scattered light is collected at F/6 by a 100 kg six element lens system with an aperture stop of 290 mm. The collected light is then transferred to 130 polychromators by 130 independent fiber bundles. The data acquisition and processing are based on a distributed computer system of dual core processors embedded in 26 chassis. Each chassis is standalone and performs data acquisition and processing for five polychromators. This system allows data to be available quickly after the MAST shot and has potential for real-time operations.
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Affiliation(s)
- R Scannell
- EURATOM/CCFE Fusion Association, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom.
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24
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Figueiredo J, Naylor G, Walsh M, Dunstan M, Scannell R, Serra F. MAST YAG Thomson scattering upgrade alignment system. Rev Sci Instrum 2010; 81:10D521. [PMID: 21033876 DOI: 10.1063/1.3475377] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
The recent upgrade to the MAST YAG Thomson scattering while enhancing the diagnostic capabilities increased the complexity of the system. There are eight YAG lasers now operational, doubling the number from the previous setup. This means alignment between each laser individually and reference points is essential to guarantee data quality and diagnostic reliability. To address this issue an alignment system was recently installed. It mimics the beams alignment in MAST by sampling 1% of the laser beam that is sent into a telescope which demagnifies by a factor of 8. The demagnified beam is viewed with a CCD camera. By scanning the camera the profile and position of the beams in the scattering zone and in a range of several meters inside MAST can be determined. Therefore alignment is checked along the beam path without having to sample it inside the vessel. The experimental apparatus and test procedures are described.
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Affiliation(s)
- J Figueiredo
- Association EURATOM-IST, Av. Rovisco Pais, Lisboa 1049-001, Portugal.
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Bohm P, Sestak D, Bilkova P, Aftanas M, Weinzettl V, Hron M, Panek R, Baillon L, Dunstan MR, Naylor G, Walsh MJ. Laser system for high resolution Thomson scattering diagnostics on the COMPASS tokamak. Rev Sci Instrum 2010; 81:10D511. [PMID: 21033866 DOI: 10.1063/1.3460450] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
A new Thomson scattering diagnostic has been designed and is currently being installed on the COMPASS tokamak in IPP Prague in the Czech Republic. The requirements for this system are very stringent with approximately 3 mm spatial resolution at the plasma edge. A critical part of this diagnostic is the laser source. To achieve the specified parameters, a multilaser solution is utilized. Two 30 Hz 1.5 J Nd:YAG laser systems, used at the fundamental wavelength of 1064 nm, are located outside the tokamak area at a distance of 20 m from the tokamak. The design of the laser beam transport path is presented. The approach leading to a final choice of optimal focusing optics is given. As well as the beam path to the tokamak, a test path of the same optical length was built. Performance tests of the laser system carried out using the test path are described.
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Affiliation(s)
- P Bohm
- Institute of Plasma Physics AS CR, v.v.i., EURATOM IPP.CR, Za Slovankou 1782/3, 18200 Prague 8, Czech Republic.
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Balboa I, Huang B, Naylor G, Walsh M, Sirinelli A, Parsons P, Fessey J, Townsend M, Beurskens M, Conway N, Flanagan J, Kempenaars M, Kirk A. Laser beam combiner for Thomson scattering core LIDAR. Rev Sci Instrum 2010; 81:10D534. [PMID: 21033888 DOI: 10.1063/1.3485081] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
The light detection and ranging Thomson scattering (TS) diagnostic is advantageous since it only requires a single view port into the tokamak. This technique requires a short pulse laser at high energy, usually showing a limited repetition rate. Having multiple lasers will increase the repetition rate. This paper presents a scanning mirror as a laser beam combiner. Measurements of the position accuracy and jitter show that the pointing stability of the laser beam is within ±25 μrad for over tens of seconds. A control feedback loop is implemented to demonstrate the long term stability. Such a system could be applied for ITER and JET.
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Affiliation(s)
- I Balboa
- EURATOM/CCFE Fusion Association, Culham Science Centre, Abingdon OX14 3DB, United Kingdom.
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Abstract
The MAST Thomson scattering diagnostic has recently been upgraded to make electron density and temperature measurements at 130 points across the 1.5 m diameter of the plasma. The new system is able to take 240 measurements per second using eight Nd:YAG lasers, each running at 30 Hz. The exact firing time of these lasers is adjusted with 100 ns precision using a field programmable gate array based trigger unit. Trigger pulses are produced to fire the lamps of all lasers and the Q switches with the appropriate delay depending on the warm-up status. The lasers may be fired in rapid bursts so as to achieve a high temporal resolution over eight points separated down to the microsecond level. This trigger unit receives optical trigger events and signals from external sources, allowing the trigger sequences to be resynchronized to the start of the plasma pulse and further events during the shot such as the entry of a fuelling pellet or randomly occurring plasma events. This resynchronization of the laser firing sequence allows accurate and reproducible measurements of fast plasma phenomena.
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Affiliation(s)
- G Naylor
- EURATOM/CCFE Fusion Association, Culham Science Centre, Abingdon, Oxfordshire, OX14 3DB, United Kingdom.
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Scannell R, Beurskens M, Kempenaars M, Naylor G, Walsh M, O'Gorman T, Pasqualotto R. Absolute calibration of LIDAR Thomson scattering systems by rotational Raman scattering. Rev Sci Instrum 2010; 81:045107. [PMID: 20441368 DOI: 10.1063/1.3374111] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
Absolute calibration of LIDAR Thomson scattering systems on large fusion devices may be achieved using rotational Raman scattering. The choice of calibrating gas molecule presents different options and design trade-offs and is likely to be strongly dependent on the laser wavelength selected. Raman scattering of hydrogenic molecules produces a very broad spectrum, however, with far fewer scattered photons than scattering from nitrogen or oxygen at the same gas pressure. Lower laser wavelengths have the advantage that the Raman cross section increases, sigma(Raman) proportional to 1/lambda(0)(4), but the disadvantage that the spectral width of the scattered spectrum decreases, Deltalambda(Raman) proportional to lambda(0)(2). This narrower spectrum makes measurement closer to the laser wavelength necessary. The design of the calibration technique presents a number of challenges. Some of these challenges are generic to all Thomson scattering systems. These include detecting a sufficient number of photoelectrons and designing filters that measure close to the laser wavelength while simultaneously achieving adequate blocking of the laser wavelength. An issue specific to LIDAR systems arises since the collection optics operates over a wide range of depth of field. This wide depth of field has the effect of changing the angle of light incident on the optical interference filter with plasma major radius. The angular distribution then determines the effective spectral transmission function of the interference filter and hence impacts on the accuracy of the absolute calibration. One method that can be used to increase absolute calibration accuracy is collecting both Stokes and anti-Stokes lines with optical filter transmission bands specifically designed to reduce systematic uncertainty.
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Affiliation(s)
- R Scannell
- EURATOM/CCFE Fusion Association, Culham Science Centre, Abingdon OX14 3DB, United Kingdom.
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Scannell R, Walsh MJ, Carolan PG, Darke AC, Dunstan MR, Huxford RB, McArdle G, Morgan D, Naylor G, O'Gorman T, Shibaev S, Barratt N, Gibson KJ, Tallents GJ, Wilson HR. Design of a new Nd:YAG Thomson scattering system for MAST. Rev Sci Instrum 2008; 79:10E730. [PMID: 19044546 DOI: 10.1063/1.2971971] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
A new infrared Thomson scattering system has been designed for the MAST tokamak. The system will measure at 120 spatial points with approximately 10 mm resolution across the plasma. Eight 30 Hz 1.6 J Nd:YAG lasers will be combined to produce a sampling rate of 240 Hz. The lasers will follow separate parallel beam paths to the MAST vessel. Scattered light will be collected at approximately f/6 over scattering angles ranging from 80 degrees to 120 degrees. The laser energy and lens size, relative to an existing 1.2 J f/12 system, greatly increases the number of scattered photons collected per unit length of laser beam. This is the third generation of this polychromator to be built and a number of modifications have been made to facilitate mass production and to improve performance. Detected scattered signals will be digitized at a rate of 1 GS/s by 8 bit analog to digital converters (ADCs.) Data may be read out from the ADCs between laser pulses to allow for real-time analysis.
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Affiliation(s)
- R Scannell
- EURATOM/UKAEA Fusion Association, Culham Science Centre, Abingdon, Oxfordshire, OX14 3DB, United Kingdom.
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Buller AJ, Chatzinikolas K, Giannopoulos N, Nair J, Kelleher SH, Raj SD, Roy K, Naylor G. Digit preference in Goldmann applanation tonometry: the hedgehog effect. Am J Ophthalmol 2005; 140:527-9. [PMID: 16139005 DOI: 10.1016/j.ajo.2005.03.046] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2004] [Revised: 03/16/2005] [Accepted: 03/19/2005] [Indexed: 11/20/2022]
Abstract
PURPOSE Digit preference is a subconscious bias towards numbers that end in certain digits. We conducted a study to assess for digit preference in intraocular pressure measurement using the Goldmann applanation tonometer. DESIGN Prospective study with masked and unmasked phases. METHODS The study was conducted in general ophthalmic clinics in a District General Hospital in Blackpool, United Kingdom, by 6 clinical ophthalmologists. Consecutive right eye intraocular pressure measurements were collected for a 2-month period for the masked phase and were repeated for the unmasked phase. The proportion of even numbers was the main outcome measure. RESULTS Six ophthalmologists completed both phases: 555 of 917 readings were even in the masked phase (P = .075), and 679 of 1056 readings were even in the unmasked phase (P = .022). CONCLUSIONS Our results suggest that digit preference influences measurements from the Goldmann applanation tonometer and that this persists when observers are aware of digit preference. This bias may influence both clinical decision-making and trial results.
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Affiliation(s)
- A J Buller
- Blackpool Victoria Hospital, Blackpool, United Kingdom.
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Abstract
BACKGROUND Both patients and government demand proof of quality of care and value for money. Our unit ist in a large teaching hospital, performing over 6000 procedures per year. We have designed and implemented a Quality Assurance (QA) program, the basis of which we believe could be a model for endoscopy QA. METHODS A QA team was formed and a literature search undertaken. An initial 3 month audit was then performed into indications for, and complications of, all procedures. The results of this initial audit led us to concentrate on colonoscopy and ERCP. The specific items of data collected were based on the "Core Quality Indicators" developed by the American Society for Gastrointestinal Endoscopy (ASGE). We also analysed data relating to endoscope disinfection, equipment failure and carried out a patient satisfaction survey. The data were presented at 3-monthly QA meeting, and appropriate action taken. RESULT We performed a detailed audit of ERCP (217 procedures) and colonoscopy (904 procedures). Patients risk was stratified using the American Society of Anaesthesiology (ASA) classification. Using these data we established our technical success and complication rates for colonoscopy and ERCP. Audit of equipment revealed that on average an endoscope was away for repair 9 % of the time. Contamination of endoscopes was frequent with glutaraldehyde disinfection; the rate of contamination fell dramatically when we changed our disinfection method. CONCLUSION A QA program can be implemented in busy endoscopy units. There are significant problems, however, in ensuring that such a program is effective: these include inadequate funding/staffing, lack of suitable information technology and lack of clear guidelines for dealing with poor performance.
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Affiliation(s)
- G Naylor
- Centre for Digestive Diseases, Leeds General Infirmary, Leeds, United Kingdom
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Abstract
Gastric bacteria can either be ingested or ascend from the distal bowel; however, their survival is usually limited by gastric acidity and motility. A reduction in gastric acid can result in bacterial overgrowth in the stomach and proximal small bowel, and the number of organisms rises as the intragastric pH rises. The increased risk of noncardia gastric cancer seen in patients with hypochlorhydria may be explained by an excess of nitrites and N-nitroso compounds (NOCs). These compounds are found in the diet of populations with a high gastric cancer risk, but can also be produced by the organisms that exist in the hypochlorhydria stomach. It has long been hypothesized that nitrites and NOCs act as one of the triggers in the atrophy-metaplasia-dysplasia-carcinoma path. However, although indirect data have linked the premalignant changes of metaplasia and dysplasia to NOCs, direct measurement of gastric nitrites and NOCs has not confirmed such a link. The role of Helicobacter pylori in bacterial overgrowth is mainly as a cause of hypochlorhydria resulting from atrophic gastritis, leading to a reduction in the parietal cell mass. Acid-suppressing drugs can result in bacterial overgrowth and increased nitrites and NOCs, although there is no current evidence for an increased risk of gastric cancer in patients taking them. One explanation is that the stomach appears to be colonized by different organisms than those in patients with hypochlorhydria for other reasons. There is some evidence that bacterial overgrowth per se can cause gastric inflammation in mice; however, although in humans the degree of gastric inflammation is greater when overgrowth is more prominent this may simply reflect the greater degree of hypochlorhydria in patients with a more severe H pylori-induced inflammation.
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Affiliation(s)
- Gregory Naylor
- Centre for Digestive Diseases, Department of Gastroenterology, The General Infirmary at Leeds, Great George Street, Leeds LS1 3EX, United Kingdom
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Abstract
AIM To objectively evaluate the postoperative face down posturing in macular hole surgery. MATERIALS AND METHODS An electronic device called 'Maculog' was developed consisting of three basic components, a mercury switch triggered by the angle of tilt placed inside an earpiece, a data-recording device connected to the earpiece with cables and a windows based software program, specially written to analyse the recorded data in the form of tables and graphs. Ten patients undergoing macular hole surgery were fitted with the device on the first postoperative day before discharge. They were also asked for a subjective record of their posturing times. Four patients were given a posturing chair to take home. The device was retrieved after the first week and the data were downloaded to a PC for analysis. The actual posturing times recorded on the device were compared to the patients' own recollections. Results In all ten patients the actual posturing time was less than the time they had recorded themselves. The average actual posturing time was 48% of the perceived posturing time. The worst time for posturing, as expected, was between midnight and early morning. The compliance was better in patients who used the posturing chair. CONCLUSIONS It is feasible to quantify the time of posturing using an electronic device and computer analysis. The study has shown that the actual posturing time is significantly less than the perceived posturing time. A further large study using 'Maculog' is now planned to correlate actual posturing time to the results of macular hole surgery.
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Affiliation(s)
- D Verma
- Department of Ophthalmology, Hull and East Yorkshire NHS Trust, E Yorks, UK.
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White KLM, Chalmers DM, Martin IG, Everett SM, Neville PM, Naylor G, Sutcliffe AE, Dixon MF, Turner PC, Schorah CJ. Dietary antioxidants and DNA damage in patients on long-term acid-suppression therapy: a randomized controlled study. Br J Nutr 2002; 88:265-71. [PMID: 12207836 DOI: 10.1079/bjn2002619] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Free radicals and reactive species produced in vivo can trigger cell damage and DNA modifications resulting in carcinogenesis. Dietary antioxidants trap these species limiting their damage. The present study evaluated the role of vitamins C and E in the prevention of potentially premalignant modifications to DNA in the human stomach by supplementing patients who, because of hypochlorhydria and possible depletion of gastric antioxidants, could be at increased risk of gastric cancer. Patients undergoing surveillance for Barrett's oesophagus (n 100), on long-term proton pump inhibitors were randomized into two groups: vitamin C (500 mg twice/d) and vitamin E (100 mg twice/d) for 12 weeks (the supplemented group) or placebo. Those attending for subsequent endoscopy had gastric juice, plasma and mucosal measurements of vitamin levels and markers of DNA damage. Seventy-two patients completed the study. Plasma ascorbic acid, total vitamin C and vitamin E were elevated in the supplemented group consistent with compliance. Gastric juice ascorbic acid and total vitamin C levels were raised significantly in the supplemented group (P=0.01) but supplementation had no effect on the mucosal level of this vitamin. However, gastric juice ascorbic acid and total vitamin C were within normal ranges in the unsupplemented group. Mucosal malondialdehyde, chemiluminescence and DNA damage levels in the comet assay were unaffected by vitamin supplementation. In conclusion, supplementation does not affect DNA damage in this group of patients. This is probably because long-term inhibition of the gastric proton pump alone does not affect gastric juice ascorbate and therefore does not increase the theoretical risk of gastric cancer because of antioxidant depletion.
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Affiliation(s)
- K L M White
- Molecular Epidemiology Unit, Epidemiology and Health Services Research, University of Leeds, LS2 9JT, UK.
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Affiliation(s)
- S O'Mahony
- Centre for Digestive Diseases, Leeds General Infirmary, UK.
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Naylor G. Using the business excellence model to develop a strategy for a healthcare organisation. Int J Health Care Qual Assur Inc Leadersh Health Serv 1999; 12:37-44. [PMID: 10537855 DOI: 10.1108/09526869910261240] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
This article examines the appropriateness of the Business Excellence Model in developing a strategy for Bolton Hospitals NHS Trust to measure organisational performance. The need for a strategy to measure organisational performance and to improve organisational performance was highlighted with the production of the Government White Paper, The New NHS: Modern and Dependable. At the heart of recommendations there is emphasis on improving quality and driving efficiency. Greater emphasis will be placed on organisations measuring their performance. By utilising the conceptual framework, which consisted of The European Foundation for Quality Management (EFQM) Model, it became evident that, although tools were in existence within Bolton Hospitals to measure organisational performance, several critical areas needed addressing. By addressing these key areas, the organisation could begin to work towards its goal of business excellence. The conclusions drawn from this project demonstrated that there was scope for Bolton Hospitals to improve on organisational performance. It was highlighted that the Trust was functioning well in some areas of the EFQM Model, but not in others. For Bolton Hospitals NHS Trust to improve organisational performance, the EFQM Model should be adopted.
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Abstract
It is postulated that retinal arterial macroaneurysms (RAMs) occur at the site of incomplete embolic occlusion of a branch retinal artery. Embolic events of the retinal vessels are related to the state of the carotid artery tree and therefore Doppler ultrasonography of the carotid arteries in these patients is of particular interest. We have examined 13 patients with retinal artery macroaneurysms with carotid artery Doppler ultrasonography (CADU). Eight of these patients (61.5%) exhibited atheromatous plaques on the same side as the RAM with a moderate degree of arterial narrowing. Although our group of patients did not show advanced carotid artery disease, alterations of the arterial wall found at the level of the carotid artery were higher than expected in a similar hypertensive population. To our knowledge this is the first study of the carotid arterial tree in these patients. Our results support the theory that RAMs may be of embolic origin. Furthermore they demonstrate that CADU is a useful investigation in patients with RAMs.
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Affiliation(s)
- G Thurairajan
- Birmingham and Midland Eye Centre, City Hospital NHS Trust
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41
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Abstract
Fully digital hearing aids, to be worn behind or within the ear, are coming on to the market. The new possibilities and challenges of such aids are both technological and audiological in character. This paper describes some of the challenges, and one manufacturer's approach to them. The signal processing structure in one current digital hearing aid is presented, and justified in audiological terms, as a background to discussions of (i) the relative urgency of further advances in technology and audiological knowledge, and (ii) the challenges to the practice of hearing aid dispensing. It is concluded that further advances in rehabilitative audiology are more pressing than further major technological progress, and that the potential client benefits of the new generation of digital hearing aids will only be realized if the challenges they present to software design and dispensing practice are recognized and met.
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Affiliation(s)
- G Naylor
- Oticon Research Centre, Snekkersten, Denmark.
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Morris ID, Lendon RG, Waters C, Naylor G, Jones N. Thymic regression and apoptosis in the rat after treatment with the Leydig cell cytotoxin ethylene dimethanesulphonate (EDS). Toxicology 1997; 120:19-27. [PMID: 9160105 DOI: 10.1016/s0300-483x(97)03626-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Ethylene dimethanesulphonate (EDS) is an alkylating agent which is widely assumed to specifically kill Leydig cells leaving other biological systems intact. However, after EDS treatment of the male rat the thymus reversibly involutes and the gonadal regional lymph nodes are activated. In the present experiments we have demonstrated that EDS has a direct action upon the thymus both in vivo and in vitro. EDS treatment of the intact and castrated male rat and the intact female rat caused regression of the thymus by up to 50% 3 days later. Total cellularity decreased while the proliferative index increased suggesting a compensatory mechanism. Thymocytes were exposed to EDS in vitro and the response compared to the glucocorticoid methylprednisolone (P), a well characterised thymic apoptotic stimulant. EDS and P increased apoptosis in the thymocyte as characterised by the appearance of cells containing nuclei with apoptotic morphology and with DNA fragmentation visualised by a characteristic ladder after agarose gel electrophoresis. The effects of both EDS and P were time and dose dependent but, in contrast to the effects in Leydig cells, P was the most effective apoptotic stimulus (for instance 100%-P compared to 30%-EDS or 7% control/DMSO after 24 h incubation). The immunological responses of the gonadal lymph nodes were not associated with testicular regression as it was seen in the castrated rat but may be related to a direct action upon the epididymis. In conclusion, tissue specificity of the Leydig cell cytotoxin needs to be extended to the thymus and epididymis. The mode of cell death in Leydig cells and thymocytes after both glucocorticoids and EDS is apoptosis which suggests that they possess some common mechanism(s) which is responsible for the toxicity of these diverse compounds.
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Abstract
We compared two conservative methods of treating Weber B1 (Lauge-Hansen supination-eversion 2) isolated fractures of the lateral malleolus in 65 patients. Treatment by immediate weight-bearing and mobilisation resulted in earlier rehabilitation than immobilisation for four weeks in a plaster cast. There was no significant difference in the amount of pain experienced or in the requirement for analgesics and early mobilisation was not associated with any complications. We therefore advocate early mobilisation for these stable ankle fractures.
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Affiliation(s)
- A M Port
- Sunderland District General Hospital, England
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Hartley JE, Ahmed S, Milkins R, Naylor G, Monson JR, Lee PW. Randomized trial of blunt-tipped versus cutting needles to reduce glove puncture during mass closure of the abdomen. Br J Surg 1996; 83:1156-7. [PMID: 8869333 DOI: 10.1002/bjs.1800830839] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
Eighty-five consecutive patients were randomized to undergo mass closure of the abdomen with no. 1 polydioxanone mounted on either a blunt-tipped (n = 46) or cutting (n = 39) needle. Gloves were changed before closure and tested for perforation afterwards using standard air or water techniques. Fourteen pairs of gloves were punctured when using a cutting needle, and three pairs when a blunt-tipped needle was used. The majority of punctures were to the non-dominant glove. The surgeon was aware of the puncture in eight of the 14 instances involving a sharp needle and in one of the three involving a blunt-tipped needle. Blunt-tipped needles, while not eliminating the risk, significantly reduced the incidence of surgical glove puncture (P < 0.001, Fisher's exact test). The use of cutting needles for abdominal closure should be abandoned.
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Affiliation(s)
- J E Hartley
- University of Hull Academic Surgical Unit, Castle Hill Hospital, Cottingham, North Humberside, UK
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46
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Port AM, McVie JL, Naylor G, Kreibich DN. Comparison of two conservative methods of treating an isolated fracture of the lateral malleolus. J Bone Joint Surg Br 1996; 78:568-72. [PMID: 8682822] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
We compared two conservative methods of treating Weber B1 (Lauge-Hansen supination-eversion 2) isolated fractures of the lateral malleolus in 65 patients. Treatment by immediate weight-bearing and mobilisation resulted in earlier rehabilitation than immobilisation for four weeks in a plaster cast. There was no significant difference in the amount of pain experienced or in the requirement for analgesics and early mobilisation was not associated with any complications. We therefore advocate early mobilisation for these stable ankle fractures.
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Affiliation(s)
- A M Port
- Sunderland District General Hospital, England
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Hope-Ross MW, McDonnell PJ, Corridan PG, Naylor G, Tan-Yee A. The management of post-keratoplasty astigmatism by post-operative adjustment of a single continuous suture. Eye (Lond) 1993; 7 ( Pt 5):625-8. [PMID: 8287982 DOI: 10.1038/eye.1993.144] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
Abstract
Penetrating keratoplasty was performed in 39 consecutive patients. A 16 bite 10-0 nylon continuous suture was used. Post-operatively, the suture was adjusted to reduce astigmatism, as determined by refraction, keratoscopy and keratometry. Suture adjustment was performed if astigmatism was over 4 dioptres (D). The suture was tightened in the flatter meridian and loosened in the steeper meridian. Twenty-one patients had suture adjustment performed. Prior to adjustment, mean (+/- standard deviation) astigmatism measured 6.33 +/- 1.38 D. Following adjustment, mean astigmatism was significantly reduced to 2.69 +/- 1.14 D (p < 0.0001). The average final astigmatism for the entire group was 2.66 +/- 1.12 D. The use of a continuous adjustable suture in penetrating keratoplasty significantly reduced the post-operative astigmatism in a group of patients undergoing penetrating keratoplasty.
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Abstract
A 12-month period was reviewed to identify the incidence of iris prolapse following cataract surgery, and any predisposing factors. Of 1408 routine manual extracapsular cataract extractions, 29 eyes (2.06%) sustained an iris prolapse. Iris prolapse was commoner in Asian patients and when less experienced surgeons were operating. Twenty-five per cent of cases occurred in patients with obstructive airways disease or post-operative cough. Thirty-four per cent of iris prolapses were identified on the first post-operative day and 86% within 2 weeks. Prolapse probably occurs because of raised intraocular pressure in association with poor wound construction or closure. More emphasis should be given to wound construction and closure during surgical training, with extra diligence when operating on patients likely to cough postoperatively. Clinicians must ensure non-English speaking patients understand about ocular aftercare following cataract surgery.
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Affiliation(s)
- G Naylor
- Birmingham and Midland Eye Hospital
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Moseley MJ, Thompson JR, Deutsch J, Misson GP, Naylor G, Tan-Yee A, Taylor RH, Fielder AR. Comparison of the Keeler Pulsair 2000 non-contact tonometer with Goldmann applanation. Eye (Lond) 1993; 7 ( Pt 1):127-30. [PMID: 8325401 DOI: 10.1038/eye.1993.26] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
Abstract
The Pulsair 2000 non-contact tonometer (Keeler Ltd, UK) is compared with the Goldmann applanation tonometer. Data from 80 eyes were acquired by four experienced observers. A linear regression analysis showed the relationship between the instruments to be: Pulsair = 0.66 + 0.95 Goldmann. Individual components of variation were analysed by analysis of variance which indicated a significant variation in the slope of the regression equation due to observers (p = 0.02) but not to the order in which topical anaesthesia was administered. Differences between two Pulsair instruments were of marginal significance (p = 0.07). The intercept of the regression equation was unaffected by any of the components of variation. Seventy-nine per cent of averaged intraocular pressure measurements obtained with the Pulsair 2000 fell on or within +/- 3 mmHg of those measured with the Goldmann tonometer. It is concluded that the Pulsair 2000 can provide clinically useful measurements of intraocular pressure.
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Affiliation(s)
- M J Moseley
- Department of Ophthalmology, University of Birmingham, UK
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Abstract
Reports of ocular damage from amniocentesis needles are rare. We report four cases of ocular perforation in which an amniocentesis needle may have been the cause and a proven case of central nervous system perforation during amniocentesis which resulted in hemianopia and gaze palsy. Ocular damage during amniocentesis may be commoner than the paucity of reports would suggest, and should be considered in all cases of congenital ocular conditions.
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Affiliation(s)
- G Naylor
- Eye Department, Birmingham Childrens Hospital
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