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Barnea I, Luria L, Girsault A, Dabah O, Dudaie M, Mirsky SK, Merkel D, Shaked NT. Analyzing Blood Cells of High-Risk Myelodysplastic Syndrome Patients Using Interferometric Phase Microscopy and Fluorescent Flow Cytometry. Bioengineering (Basel) 2024;11:256. [PMID: 38534530 DOI: 10.3390/bioengineering11030256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2024] [Revised: 02/28/2024] [Accepted: 03/03/2024] [Indexed: 03/28/2024]  Open
2
Dudaie M, Barnea I, Nissim N, Shaked NT. On-chip label-free cell classification based directly on off-axis holograms and spatial-frequency-invariant deep learning. Sci Rep 2023;13:12370. [PMID: 37524884 PMCID: PMC10390541 DOI: 10.1038/s41598-023-38160-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Accepted: 07/04/2023] [Indexed: 08/02/2023]  Open
3
Noy L, Barnea I, Mirsky SK, Kamber D, Levi M, Shaked NT. Sperm‐Cell DNA Fragmentation Prediction Using Label‐Free Quantitative Phase Imaging and Deep Learning. Cytometry A 2022. [DOI: 10.1002/cyto.a.24703] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2022] [Revised: 08/16/2022] [Accepted: 11/02/2022] [Indexed: 11/08/2022]
4
Mirsky SK, Barnea I, Shaked NT. Dynamic Tomographic Phase Microscopy by Double Six-Pack Holography. ACS Photonics 2022;9:1295-1303. [PMID: 35480489 PMCID: PMC9026267 DOI: 10.1021/acsphotonics.1c01804] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Indexed: 05/25/2023]
5
Atzitz Y, Dudaie M, Barnea I, Shaked NT. Sperm Inspection for In Vitro Fertilization via Self-Assembled Microdroplet Formation and Quantitative Phase Microscopy. Cells 2021;10:3317. [PMID: 34943823 PMCID: PMC8699486 DOI: 10.3390/cells10123317] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Revised: 11/19/2021] [Accepted: 11/23/2021] [Indexed: 11/16/2022]  Open
6
Nissim N, Dudaie M, Barnea I, Shaked NT. Real-Time Stain-Free Classification of Cancer Cells and Blood Cells Using Interferometric Phase Microscopy and Machine Learning. Cytometry A 2021. [PMID: 32910546 DOI: 10.1002/cytoa.24227] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2023]
7
Guo R, Barnea I, Shaked NT. Limited-angle tomographic phase microscopy utilizing confocal scanning fluorescence microscopy. Biomed Opt Express 2021;12:1869-1881. [PMID: 33996204 PMCID: PMC8086471 DOI: 10.1364/boe.419598] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2021] [Revised: 02/12/2021] [Accepted: 02/16/2021] [Indexed: 05/03/2023]
8
Dudaie M, Nissim N, Barnea I, Gerling T, Duschl C, Kirschbaum M, Shaked NT. Label-free discrimination and selection of cancer cells from blood during flow using holography-induced dielectrophoresis. J Biophotonics 2020;13:e202000151. [PMID: 32700785 DOI: 10.1002/jbio.202000151] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Revised: 07/02/2020] [Accepted: 07/21/2020] [Indexed: 05/26/2023]
9
Nissim N, Dudaie M, Barnea I, Shaked NT. Real-Time Stain-Free Classification of Cancer Cells and Blood Cells Using Interferometric Phase Microscopy and Machine Learning. Cytometry A 2020;99:511-523. [PMID: 32910546 DOI: 10.1002/cyto.a.24227] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2020] [Revised: 07/29/2020] [Accepted: 09/07/2020] [Indexed: 12/14/2022]
10
Cohen-Maslaton S, Barnea I, Taieb A, Shaked NT. Cell and nucleus refractive-index mapping by interferometric phase microscopy and rapid confocal fluorescence microscopy. J Biophotonics 2020;13:e202000117. [PMID: 32468735 DOI: 10.1002/jbio.202000117] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2020] [Revised: 05/06/2020] [Accepted: 05/21/2020] [Indexed: 05/12/2023]
11
Dardikman-Yoffe G, Mirsky SK, Barnea I, Shaked NT. High-resolution 4-D acquisition of freely swimming human sperm cells without staining. Sci Adv 2020;6:eaay7619. [PMID: 32300651 PMCID: PMC7148098 DOI: 10.1126/sciadv.aay7619] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2019] [Accepted: 01/09/2020] [Indexed: 05/20/2023]
12
Guo R, Mirsky SK, Barnea I, Dudaie M, Shaked NT. Quantitative phase imaging by wide-field interferometry with variable shearing distance uncoupled from the off-axis angle. Opt Express 2020;28:5617-5628. [PMID: 32121778 DOI: 10.1364/oe.385437] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2019] [Accepted: 01/12/2020] [Indexed: 05/20/2023]
13
Rubin M, Stein O, Turko NA, Nygate Y, Roitshtain D, Karako L, Barnea I, Giryes R, Shaked NT. TOP-GAN: Stain-free cancer cell classification using deep learning with a small training set. Med Image Anal 2019;57:176-185. [DOI: 10.1016/j.media.2019.06.014] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2018] [Revised: 05/18/2019] [Accepted: 06/25/2019] [Indexed: 01/01/2023]
14
Barnea I, Karako L, Mirsky SK, Levi M, Balberg M, Shaked NT. Stain-free interferometric phase microscopy correlation with DNA fragmentation stain in human spermatozoa. J Biophotonics 2018;11:e201800137. [PMID: 29877620 DOI: 10.1002/jbio.201800137] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2018] [Accepted: 06/05/2018] [Indexed: 06/08/2023]
15
Nygate YN, Singh G, Barnea I, Shaked NT. Simultaneous off-axis multiplexed holography and regular fluorescence microscopy of biological cells. Opt Lett 2018;43:2587-2590. [PMID: 29856436 DOI: 10.1364/ol.43.002587] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2018] [Accepted: 04/20/2018] [Indexed: 06/08/2023]
16
Turko NA, Eravuchira PJ, Barnea I, Shaked NT. Simultaneous three-wavelength unwrapping using external digital holographic multiplexing module. Opt Lett 2018;43:1943-1946. [PMID: 29714767 DOI: 10.1364/ol.43.001943] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
17
Eravuchira PJ, Mirsky SK, Barnea I, Levi M, Balberg M, Shaked NT. Individual sperm selection by microfluidics integrated with interferometric phase microscopy. Methods 2018;136:152-159. [DOI: 10.1016/j.ymeth.2017.09.009] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2017] [Revised: 09/19/2017] [Accepted: 09/20/2017] [Indexed: 10/18/2022]  Open
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Dardikman G, Nygate YN, Barnea I, Turko NA, Singh G, Javidi B, Shaked NT. Integral refractive index imaging of flowing cell nuclei using quantitative phase microscopy combined with fluorescence microscopy. Biomed Opt Express 2018. [PMID: 29541511 PMCID: PMC5846521 DOI: 10.1364/boe.9.001177] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
19
Balberg M, Levi M, Kalinowski K, Barnea I, Mirsky SK, Shaked NT. Localized measurements of physical parameters within human sperm cells obtained with wide-field interferometry. J Biophotonics 2017;10:1305-1314. [PMID: 28079304 DOI: 10.1002/jbio.201600186] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2016] [Revised: 11/02/2016] [Accepted: 12/02/2016] [Indexed: 05/12/2023]
20
Mirsky SK, Barnea I, Levi M, Greenspan H, Shaked NT. Automated analysis of individual sperm cells using stain-free interferometric phase microscopy and machine learning. Cytometry A 2017;91:893-900. [DOI: 10.1002/cyto.a.23189] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2017] [Revised: 07/10/2017] [Accepted: 07/25/2017] [Indexed: 11/10/2022]
21
Habaza M, Kirschbaum M, Guernth‐Marschner C, Dardikman G, Barnea I, Korenstein R, Duschl C, Shaked NT. Rapid 3D Refractive-Index Imaging of Live Cells in Suspension without Labeling Using Dielectrophoretic Cell Rotation. Adv Sci (Weinh) 2017;4:1600205. [PMID: 28251046 PMCID: PMC5323858 DOI: 10.1002/advs.201600205] [Citation(s) in RCA: 59] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2016] [Revised: 08/14/2016] [Indexed: 05/19/2023]
22
Litaor MI, Barnea I, Reichmann O, Zohar I. Evaluation of the ornithogenic influence on the trophic state of East Mediterranean wetland ecosystem using trend analysis. Sci Total Environ 2016;539:231-240. [PMID: 26363396 DOI: 10.1016/j.scitotenv.2015.07.103] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2015] [Revised: 07/17/2015] [Accepted: 07/22/2015] [Indexed: 06/05/2023]
23
Turko NA, Barnea I, Blum O, Korenstein R, Shaked NT. Detection and controlled depletion of cancer cells using photothermal phase microscopy. J Biophotonics 2015;8:755-763. [PMID: 25400214 DOI: 10.1002/jbio.201400095] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2014] [Revised: 09/17/2014] [Accepted: 09/28/2014] [Indexed: 06/04/2023]
24
Vexler A, Lidawi G, Loew V, Barnea I, Karaush V, Shtabsky A, Ben-Yosef R. Anti-ErbB4 targeting approaches for prostate cancer treatment. Cancer Biol Ther 2014;7:1090-4. [DOI: 10.4161/cbt.7.7.6167] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
25
Barnea I, Ben-Yosef R, Karaush V, Benhar I, Vexler A. Targeting EGFR-positive cancer cells with cetuximab-ZZ-PE38: Results of in vitro and in vivo studies. Head Neck 2012;35:1171-7. [DOI: 10.1002/hed.23093] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/25/2012] [Indexed: 11/09/2022]  Open
26
Barnea I, Haif S, Keshet R, Karaush V, Lev-Ari S, Khafif A, Shtabsky A, Yarden Y, Vexler A, Ben Yosef R. Targeting ErbB-1 and ErbB-4 in irradiated head and neck cancer: results of in vitro and in vivo studies. Head Neck 2012;35:399-407. [PMID: 22367849 DOI: 10.1002/hed.22967] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/20/2011] [Indexed: 11/09/2022]  Open
27
Yaal-Hahoshen N, Shina S, Leider-Trejo L, Barnea I, Shabtai EL, Azenshtein E, Greenberg I, Keydar I, Ben-Baruch A. The chemokine CCL5 as a potential prognostic factor predicting disease progression in stage II breast cancer patients. Clin Cancer Res 2007;12:4474-80. [PMID: 16899591 DOI: 10.1158/1078-0432.ccr-06-0074] [Citation(s) in RCA: 113] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
28
Ben-Yosef R, Sarid D, Vexler A, Lidawi G, Barnea I, Marmor S, Stavesky A, Starr A, Hachoshen NY. ErbB1–ErbB4 nuclear and cytoplasmic overexpression, ethnicity and predicted outcome in prostate cancer. Target Oncol 2007. [DOI: 10.1007/s11523-007-0069-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
29
Ben-Yosef R, Starr A, Karaush V, Loew V, Lev-Ari S, Barnea I, Lidawi G, Shtabsky A, Greif Y, Yarden Y, Vexler A. ErbB-4 may control behavior of prostate cancer cells and serve as a target for molecular therapy. Prostate 2007;67:871-80. [PMID: 17440944 DOI: 10.1002/pros.20555] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
30
Mazor Y, Barnea I, Keydar I, Benhar I. Antibody internalization studied using a novel IgG binding toxin fusion. J Immunol Methods 2007;321:41-59. [PMID: 17336321 DOI: 10.1016/j.jim.2007.01.008] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2006] [Revised: 11/29/2006] [Accepted: 01/07/2007] [Indexed: 10/23/2022]
31
Zaretsky JZ, Barnea I, Aylon Y, Gorivodsky M, Wreschner DH, Keydar I. MUC1 gene overexpressed in breast cancer: structure and transcriptional activity of the MUC1 promoter and role of estrogen receptor alpha (ERalpha) in regulation of the MUC1 gene expression. Mol Cancer 2006;5:57. [PMID: 17083744 PMCID: PMC1636664 DOI: 10.1186/1476-4598-5-57] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2006] [Accepted: 11/05/2006] [Indexed: 11/10/2022]  Open
32
Ben-Yosef R, Barnea I, Sarid D, Vexler A, Marmor S, Starr A, Greif Y, Inbar M, Barak N. ErbB1–4 expression in prostate cancer patients and its correlation to patients’ ethnicity and outcome. J Clin Oncol 2006. [DOI: 10.1200/jco.2006.24.18_suppl.14615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
33
Tatcher M, Barnea I, Loevinger E. Treatment plan optimisation by the use of photographic film densitometry and closed-circuit television. Br J Radiol 1970;43:664. [PMID: 5470789 DOI: 10.1259/0007-1285-43-513-664] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]  Open
34
Museteanu C, Zambilovicl Z, Timerhmann I, Barnea I. [Waterhouse-Friedrichsen-Bamatter syndrome in Meningococcus mucosus]. Arch Fr Pediatr 1959;16:369-70. [PMID: 13650709] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 04/23/2023]
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