1
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Guillemin R, Inhester L, Ilchen M, Mazza T, Boll R, Weber T, Eckart S, Grychtol P, Rennhack N, Marchenko T, Velasquez N, Travnikova O, Ismail I, Niskanen J, Kukk E, Trinter F, Gisselbrecht M, Feifel R, Sansone G, Rolles D, Martins M, Meyer M, Simon M, Santra R, Pfeifer T, Jahnke T, Piancastelli MN. Isotope effects in dynamics of water isotopologues induced by core ionization at an x-ray free-electron laser. Struct Dyn 2023; 10:054302. [PMID: 37799711 PMCID: PMC10550338 DOI: 10.1063/4.0000197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Accepted: 09/05/2023] [Indexed: 10/07/2023]
Abstract
Dynamical response of water exposed to x-rays is of utmost importance in a wealth of science areas. We exposed isolated water isotopologues to short x-ray pulses from a free-electron laser and detected momenta of all produced ions in coincidence. By combining experimental results and theoretical modeling, we identify significant structural dynamics with characteristic isotope effects in H2O2+, D2O2+, and HDO2+, such as asymmetric bond elongation and bond-angle opening, leading to two-body or three-body fragmentation on a timescale of a few femtoseconds. A method to disentangle the sequences of events taking place upon the consecutive absorption of two x-ray photons is described. The obtained deep look into structural properties and dynamics of dissociating water isotopologues provides essential insights into the underlying mechanisms.
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Affiliation(s)
- R. Guillemin
- Sorbonne Université, CNRS, Laboratoire de Chimie Physique-Matière et Rayonnement, LCPMR, 75005 Paris, France
| | - L. Inhester
- Center for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
| | | | - T. Mazza
- European XFEL, 22869 Schenefeld, Germany
| | - R. Boll
- European XFEL, 22869 Schenefeld, Germany
| | - Th. Weber
- Lawrence Berkeley National Laboratory, Chemical Sciences, Berkeley, California 94720, USA
| | - S. Eckart
- Institut für Kernphysik, Goethe-Universität, 60438 Frankfurt am Main, Germany
| | | | | | - T. Marchenko
- Sorbonne Université, CNRS, Laboratoire de Chimie Physique-Matière et Rayonnement, LCPMR, 75005 Paris, France
| | - N. Velasquez
- Sorbonne Université, CNRS, Laboratoire de Chimie Physique-Matière et Rayonnement, LCPMR, 75005 Paris, France
| | - O. Travnikova
- Sorbonne Université, CNRS, Laboratoire de Chimie Physique-Matière et Rayonnement, LCPMR, 75005 Paris, France
| | - I. Ismail
- Sorbonne Université, CNRS, Laboratoire de Chimie Physique-Matière et Rayonnement, LCPMR, 75005 Paris, France
| | - J. Niskanen
- Department of Physics and Astronomy, University of Turku, 20014 Turku, Finland
| | - E. Kukk
- Department of Physics and Astronomy, University of Turku, 20014 Turku, Finland
| | | | | | - R. Feifel
- Department of Physics, University of Gothenburg, 412 96 Gothenburg, Sweden
| | - G. Sansone
- Physikalisches Institut, Universität Freiburg, 79104 Freiburg, Germany
| | - D. Rolles
- J. R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas 66506, USA
| | - M. Martins
- Institut für Experimentalphysik, Universität Hamburg, 22761 Hamburg, Germany
| | - M. Meyer
- European XFEL, 22869 Schenefeld, Germany
| | - M. Simon
- Sorbonne Université, CNRS, Laboratoire de Chimie Physique-Matière et Rayonnement, LCPMR, 75005 Paris, France
| | | | - T. Pfeifer
- Max-Planck-Institut für Kernphysik, 69117 Heidelberg, Germany
| | - T. Jahnke
- Max-Planck-Institut für Kernphysik, 69117 Heidelberg, Germany
| | - M. N. Piancastelli
- Sorbonne Université, CNRS, Laboratoire de Chimie Physique-Matière et Rayonnement, LCPMR, 75005 Paris, France
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2
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Spiekermann G, Sahle CJ, Niskanen J, Gilmore K, Petitgirard S, Sternemann C, Tse JS, Murakami M. Sensitivity of the Kβ″ X-ray Emission Line to Coordination Changes in GeO 2 and TiO 2. J Phys Chem Lett 2023; 14:1848-1853. [PMID: 36779679 PMCID: PMC9940287 DOI: 10.1021/acs.jpclett.3c00017] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Accepted: 02/07/2023] [Indexed: 06/18/2023]
Abstract
The hard X-ray Kβ″ emission line shows sensitivity with respect to a wide range of cation-ligand coordination, which we investigate in the cases of GeO2 and TiO2 on the basis of ab initio spectral calculations on amorphous and crystalline structures. In compressed amorphous GeO2, the sampling of a large number of instantaneous coordination polyhedra from an ab initio molecular dynamics trajectory reveals that the functional relation between the Kβ″ shift and coordination is close to linear between 4-fold and 7-fold coordination. A similar sensitivity of the Kβ″ emission line exists in the coordination range between six and nine of crystalline high-pressure TiO2 polymorphs. Our results demonstrate the potential of the Kβ″ emission line in research on the structure of amorphous oxide material.
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Affiliation(s)
| | - Ch. J. Sahle
- European
Synchrotron Radiation Facility (ESRF), 71 Avenue des Martyrs, 38000 Grenoble, France
| | - J. Niskanen
- Department
of Physics and Astronomy, University of
Turku, 20014 Turun yliopisto, Finland
| | - K. Gilmore
- Physics
Department and IRIS Adlershof, Humboldt
Universität zu Berlin, Zum grossen Windkanal 2, 12489 Berlin, Germany
| | | | - C. Sternemann
- Technische
Universität Dortmund, Fakultät Physik/DELTA, Maria-Goeppert-Mayer-Strasse 2, 44227 Dortmund, Germany
| | - J. S. Tse
- Department
of Physics and Engineering Physics, University
of Saskatchewan, Saskatoon S7N 5E2, Canada
| | - M. Murakami
- ETH
Zürich, Rämistrasse 101, 8092 Zürich, Switzerland
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3
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Niskanen J, Vladyka A, Niemi J, Sahle C. Emulator-based decomposition for structural sensitivity of core-level spectra. R Soc Open Sci 2022; 9:220093. [PMID: 35706659 PMCID: PMC9174725 DOI: 10.1098/rsos.220093] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Accepted: 05/09/2022] [Indexed: 05/03/2023]
Abstract
We explore the sensitivity of several core-level spectroscopic methods to the underlying atomistic structure by using the water molecule as our test system. We first define a metric that measures the magnitude of spectral change as a function of the structure, which allows for identifying structural regions with high spectral sensitivity. We then apply machine-learning-emulator-based decomposition of the structural parameter space for maximal explained spectral variance, first on overall spectral profile and then on chosen integrated regions of interest therein. The presented method recovers more spectral variance than partial least-squares fitting and the observed behaviour is well in line with the aforementioned metric for spectral sensitivity. The analysis method is able to independently identify spectroscopically dominant degrees of freedom, and to quantify their effect and significance.
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Affiliation(s)
- J. Niskanen
- Department of Physics and Astronomy, University of Turku, 20014 Turun yliopisto, Finland
| | - A. Vladyka
- Department of Physics and Astronomy, University of Turku, 20014 Turun yliopisto, Finland
| | - J. Niemi
- Department of Physics and Astronomy, University of Turku, 20014 Turun yliopisto, Finland
| | - C.J. Sahle
- European Synchrotron Radiation Source, 71 Avenue des Martyrs, 38000 Grenoble, France
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4
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Stierhof J, Kühn S, Winter M, Micke P, Steinbrügge R, Shah C, Hell N, Bissinger M, Hirsch M, Ballhausen R, Lang M, Gräfe C, Wipf S, Cumbee R, Betancourt-Martinez GL, Park S, Niskanen J, Chung M, Porter FS, Stöhlker T, Pfeifer T, Brown GV, Bernitt S, Hansmann P, Wilms J, Crespo López-Urrutia JR, Leutenegger MA. A new benchmark of soft X-ray transition energies of Ne , CO 2 , and SF 6 : paving a pathway towards ppm accuracy. Eur Phys J D At Mol Opt Phys 2022; 76:38. [PMID: 35273463 PMCID: PMC8888507 DOI: 10.1140/epjd/s10053-022-00355-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Accepted: 01/23/2022] [Indexed: 06/14/2023]
Abstract
ABSTRACT A key requirement for the correct interpretation of high-resolution X-ray spectra is that transition energies are known with high accuracy and precision. We investigate the K-shell features of Ne , CO 2 , and SF 6 gases, by measuring their photo ion-yield spectra at the BESSY II synchrotron facility simultaneously with the 1s-np fluorescence emission of He-like ions produced in the Polar-X EBIT. Accurate ab initio calculations of transitions in these ions provide the basis of the calibration. While the CO 2 result agrees well with previous measurements, the SF 6 spectrum appears shifted by ∼ 0.5 eV, about twice the uncertainty of the earlier results. Our result for Ne shows a large departure from earlier results, but may suffer from larger systematic effects than our other measurements. The molecular spectra agree well with our results of time-dependent density functional theory. We find that the statistical uncertainty allows calibrations in the desired range of 1-10 meV, however, systematic contributions still limit the uncertainty to ∼ 40-100 meV, mainly due to the temporal stability of the monochromator energy scale. Combining our absolute calibration technique with a relative energy calibration technique such as photoelectron energy spectroscopy will be necessary to realize its full potential of achieving uncertainties as low as 1-10 meV.
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Affiliation(s)
- J. Stierhof
- Dr. Karl Remeis-Observatory and Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Sternwartstr. 7, 96049 Bamberg, Germany
| | - S. Kühn
- Max-Planck-Institut für Kernphysik, Saupfercheckweg 1, 69117 Heidelberg, Germany
| | - M. Winter
- Institute of Theoretical Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Staudtstr. 7/B2, 91058 Erlangen, Germany
- CNRS, Institut NEEL, Université Grenoble Alpes, CNRS, Institut NEEL, 25 rue des Martyrs BP 166, 38042 Grenoble Cedex 9, France
| | - P. Micke
- Max-Planck-Institut für Kernphysik, Saupfercheckweg 1, 69117 Heidelberg, Germany
- CERN, 1211 Geneva 23, Switzerland
| | - R. Steinbrügge
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
| | - C. Shah
- Max-Planck-Institut für Kernphysik, Saupfercheckweg 1, 69117 Heidelberg, Germany
- NASA Goddard Space Flight Center, 8800 Greenbelt Rd., Greenbelt, MD 20771 USA
- Lawrence Livermore National Laboratory, 7000 East Ave., Livermore, CA 94550 USA
| | - N. Hell
- Lawrence Livermore National Laboratory, 7000 East Ave., Livermore, CA 94550 USA
| | - M. Bissinger
- Dr. Karl Remeis-Observatory and Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Sternwartstr. 7, 96049 Bamberg, Germany
| | - M. Hirsch
- Dr. Karl Remeis-Observatory and Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Sternwartstr. 7, 96049 Bamberg, Germany
| | - R. Ballhausen
- Dr. Karl Remeis-Observatory and Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Sternwartstr. 7, 96049 Bamberg, Germany
| | - M. Lang
- Dr. Karl Remeis-Observatory and Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Sternwartstr. 7, 96049 Bamberg, Germany
| | - C. Gräfe
- Dr. Karl Remeis-Observatory and Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Sternwartstr. 7, 96049 Bamberg, Germany
| | - S. Wipf
- Institut für Optik und Quantenelektronik, Friedrich-Schiller-Universität Jena, Max-Wien-Platz 1, 07743 Jena, Germany
| | - R. Cumbee
- NASA Goddard Space Flight Center, 8800 Greenbelt Rd., Greenbelt, MD 20771 USA
- Department of Astronomy, University of Maryland, College Park, MD 20742 USA
| | - G. L. Betancourt-Martinez
- Institut de Recherche en Astrophysique et Planétologie, 9, avenue du Colonel Roche BP 44346, 31028 Toulouse Cedex 4, France
| | - S. Park
- Ulsan National Institute of Science and Technology, 50 UNIST-gil, Ulsan, South Korea
| | - J. Niskanen
- Institute for Methods and Instrumentation in Synchrotron Radiation Research G-ISRR, Helmholtz-Zentrum Berlin für Materialien und Energie, Albert-Einstein-Strasse 15, 12489 Berlin, Germany
| | - M. Chung
- Ulsan National Institute of Science and Technology, 50 UNIST-gil, Ulsan, South Korea
| | - F. S. Porter
- NASA Goddard Space Flight Center, 8800 Greenbelt Rd., Greenbelt, MD 20771 USA
| | - T. Stöhlker
- Institut für Optik und Quantenelektronik, Friedrich-Schiller-Universität Jena, Max-Wien-Platz 1, 07743 Jena, Germany
- GSI Helmholtzzentrum für Schwerionenforschung, Planckstraße 1, 64291 Darmstadt, Germany
- Helmholtz-Institut Jena, Fröbelstieg 3, 07743 Jena, Germany
| | - T. Pfeifer
- Max-Planck-Institut für Kernphysik, Saupfercheckweg 1, 69117 Heidelberg, Germany
| | - G. V. Brown
- Lawrence Livermore National Laboratory, 7000 East Ave., Livermore, CA 94550 USA
| | - S. Bernitt
- Max-Planck-Institut für Kernphysik, Saupfercheckweg 1, 69117 Heidelberg, Germany
- Institut für Optik und Quantenelektronik, Friedrich-Schiller-Universität Jena, Max-Wien-Platz 1, 07743 Jena, Germany
- GSI Helmholtzzentrum für Schwerionenforschung, Planckstraße 1, 64291 Darmstadt, Germany
- Helmholtz-Institut Jena, Fröbelstieg 3, 07743 Jena, Germany
| | - P. Hansmann
- Institute of Theoretical Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Staudtstr. 7/B2, 91058 Erlangen, Germany
| | - J. Wilms
- Dr. Karl Remeis-Observatory and Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Sternwartstr. 7, 96049 Bamberg, Germany
| | | | - M. A. Leutenegger
- NASA Goddard Space Flight Center, 8800 Greenbelt Rd., Greenbelt, MD 20771 USA
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5
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Leutenegger MA, Kühn S, Micke P, Steinbrügge R, Stierhof J, Shah C, Hell N, Bissinger M, Hirsch M, Ballhausen R, Lang M, Gräfe C, Wipf S, Cumbee R, Betancourt-Martinez GL, Park S, Yerokhin VA, Surzhykov A, Stolte WC, Niskanen J, Chung M, Porter FS, Stöhlker T, Pfeifer T, Wilms J, Brown GV, Crespo López-Urrutia JR, Bernitt S. High-Precision Determination of Oxygen K_{α} Transition Energy Excludes Incongruent Motion of Interstellar Oxygen. Phys Rev Lett 2020; 125:243001. [PMID: 33412031 DOI: 10.1103/physrevlett.125.243001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Revised: 10/19/2020] [Accepted: 10/30/2020] [Indexed: 06/12/2023]
Abstract
We demonstrate a widely applicable technique to absolutely calibrate the energy scale of x-ray spectra with experimentally well-known and accurately calculable transitions of highly charged ions, allowing us to measure the K-shell Rydberg spectrum of molecular O_{2} with 8 meV uncertainty. We reveal a systematic ∼450 meV shift from previous literature values, and settle an extraordinary discrepancy between astrophysical and laboratory measurements of neutral atomic oxygen, the latter being calibrated against the aforementioned O_{2} literature values. Because of the widespread use of such, now deprecated, references, our method impacts on many branches of x-ray absorption spectroscopy. Moreover, it potentially reduces absolute uncertainties there to below the meV level.
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Affiliation(s)
- M A Leutenegger
- NASA Goddard Space Flight Center, 8800 Greenbelt Road, Greenbelt, Maryland 20771, USA
| | - S Kühn
- Max-Planck-Institut für Kernphysik, Saupfercheckweg 1, 69117 Heidelberg, Germany
| | - P Micke
- Max-Planck-Institut für Kernphysik, Saupfercheckweg 1, 69117 Heidelberg, Germany
- Physikalisch-Technische Bundesanstalt, Bundesallee 100, 38116 Braunschweig, Germany
| | - R Steinbrügge
- Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
| | - J Stierhof
- Remeis-Sternwarte and Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Sternwartstrasse 7, 96049 Bamberg, Germany
| | - C Shah
- NASA Goddard Space Flight Center, 8800 Greenbelt Road, Greenbelt, Maryland 20771, USA
- Max-Planck-Institut für Kernphysik, Saupfercheckweg 1, 69117 Heidelberg, Germany
| | - N Hell
- Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, USA
| | - M Bissinger
- Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erwin-Rommel-Strasse 1, 91058 Erlangen, Germany
| | - M Hirsch
- Remeis-Sternwarte and Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Sternwartstrasse 7, 96049 Bamberg, Germany
| | - R Ballhausen
- Remeis-Sternwarte and Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Sternwartstrasse 7, 96049 Bamberg, Germany
| | - M Lang
- Remeis-Sternwarte and Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Sternwartstrasse 7, 96049 Bamberg, Germany
| | - C Gräfe
- Remeis-Sternwarte and Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Sternwartstrasse 7, 96049 Bamberg, Germany
| | - S Wipf
- Institut für Optik und Quantenelektronik, Friedrich-Schiller-Universität Jena, Max-Wien-Platz 1, 07743 Jena, Germany
| | - R Cumbee
- NASA Goddard Space Flight Center, 8800 Greenbelt Road, Greenbelt, Maryland 20771, USA
- Department of Astronomy, University of Maryland, College Park, Maryland 20742, USA
| | - G L Betancourt-Martinez
- Institut de Recherche en Astrophysique et Planétologie, 9, avenue du Colonel Roche BP 44346, 31028 Toulouse Cedex 4, France
| | - S Park
- Ulsan National Institute of Science and Technology, 50 UNIST-gil, 44919 Ulsan, Republic of Korea
| | - V A Yerokhin
- Peter the Great St. Petersburg Polytechnic University, 195251 St. Petersburg, Russia
| | - A Surzhykov
- Physikalisch-Technische Bundesanstalt, Bundesallee 100, 38116 Braunschweig, Germany
- Institut für Mathematische Physik, Technische Universität Braunschweig, D-38106 Braunschweig, Germany
| | - W C Stolte
- Advanced Light Source, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - J Niskanen
- Institute for Methods and Instrumentation in Synchrotron Radiation Research G-ISRR, Helmholtz-Zentrum Berlin für Materialien und Energie, Albert-Einstein-Strasse 15, 12489 Berlin, Germany
- Department of Physics and Astronomy, University of Turku, FI-20014 Turun Yliopisto, Finland
| | - M Chung
- Ulsan National Institute of Science and Technology, 50 UNIST-gil, 44919 Ulsan, Republic of Korea
| | - F S Porter
- NASA Goddard Space Flight Center, 8800 Greenbelt Road, Greenbelt, Maryland 20771, USA
| | - T Stöhlker
- Institut für Optik und Quantenelektronik, Friedrich-Schiller-Universität Jena, Max-Wien-Platz 1, 07743 Jena, Germany
- GSI Helmholtzzentrum für Schwerionenforschung, Planckstraße 1, 64291 Darmstadt, Germany
- Helmholtz-Institut Jena, Fröbelstieg 3, 07743 Jena, Germany
| | - T Pfeifer
- Max-Planck-Institut für Kernphysik, Saupfercheckweg 1, 69117 Heidelberg, Germany
| | - J Wilms
- Remeis-Sternwarte and Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Sternwartstrasse 7, 96049 Bamberg, Germany
| | - G V Brown
- Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, USA
| | | | - S Bernitt
- Max-Planck-Institut für Kernphysik, Saupfercheckweg 1, 69117 Heidelberg, Germany
- Institut für Optik und Quantenelektronik, Friedrich-Schiller-Universität Jena, Max-Wien-Platz 1, 07743 Jena, Germany
- GSI Helmholtzzentrum für Schwerionenforschung, Planckstraße 1, 64291 Darmstadt, Germany
- Helmholtz-Institut Jena, Fröbelstieg 3, 07743 Jena, Germany
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6
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Abstract
Curly fur is a common phenotype in many dog breeds, known to result from a missense variant (c.451C>T) in exon 2 of the keratin 71 (KRT71) gene. During screening for this variant across various breeds, we found that Curly Coated Retrievers (CCRs) fixed with the trait did not carry the known variant. By analysis of whole-genome sequencing data of one CCR we identified a novel genetic cause for curly fur. We found a novel structural variant in exon 7 of the KRT71 gene (c.1266_1273delinsACA) that was predicted to result in a frameshift and stop loss, therefore significantly affecting the structure of the protein, if translated. The variant was also found at lower frequencies in five other breeds, including Lagotto Romagnolo, Bichon Frise, Spanish Water Dog, Chesapeake Bay Retriever and Irish Terrier. One curly-coated Lagotto carried neither of the two KRT71 variants. These results identify a second variant for curly coat in KRT71 and suggest the existence of additional alleles. This study enables the development of an additional KRT71 gene test for breeders to understand and manage coat types.
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Affiliation(s)
- E Salmela
- Department of Veterinary Biosciences, University of Helsinki, P.O. Box 66, 00014, Helsinki, Finland.,Research Programs Unit, Molecular Neurology, University of Helsinki, Haartmaninkatu 8, 00290, Helsinki, Finland.,The Folkhälsan Institute of Genetics, Haartmaninkatu 8, 00290, Helsinki, Finland.,Department of Biosciences, University of Helsinki, P.O. Box 56, 00014, Helsinki, Finland
| | - J Niskanen
- Department of Veterinary Biosciences, University of Helsinki, P.O. Box 66, 00014, Helsinki, Finland.,Research Programs Unit, Molecular Neurology, University of Helsinki, Haartmaninkatu 8, 00290, Helsinki, Finland.,The Folkhälsan Institute of Genetics, Haartmaninkatu 8, 00290, Helsinki, Finland
| | - M Arumilli
- Department of Veterinary Biosciences, University of Helsinki, P.O. Box 66, 00014, Helsinki, Finland.,Research Programs Unit, Molecular Neurology, University of Helsinki, Haartmaninkatu 8, 00290, Helsinki, Finland.,The Folkhälsan Institute of Genetics, Haartmaninkatu 8, 00290, Helsinki, Finland
| | - J Donner
- Genoscoper Laboratories Oy, Biomedicum Helsinki 2U, Tukholmankatu 8, 00290, Helsinki, Finland
| | - H Lohi
- Department of Veterinary Biosciences, University of Helsinki, P.O. Box 66, 00014, Helsinki, Finland.,Research Programs Unit, Molecular Neurology, University of Helsinki, Haartmaninkatu 8, 00290, Helsinki, Finland.,The Folkhälsan Institute of Genetics, Haartmaninkatu 8, 00290, Helsinki, Finland
| | - M K Hytönen
- Department of Veterinary Biosciences, University of Helsinki, P.O. Box 66, 00014, Helsinki, Finland.,Research Programs Unit, Molecular Neurology, University of Helsinki, Haartmaninkatu 8, 00290, Helsinki, Finland.,The Folkhälsan Institute of Genetics, Haartmaninkatu 8, 00290, Helsinki, Finland
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7
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Niskanen J, Jänkälä K, Huttula M, Föhlisch A. QED effects in 1s and 2s single and double ionization potentials of the noble gases. J Chem Phys 2017; 146:144312. [PMID: 28411594 DOI: 10.1063/1.4979991] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We present calculations on the quantum electrodynamics (QED) effects in 1s and 2s single and double ionization potentials of noble gases from Ne to Rn as perturbations on relativistic four-component Dirac-Fock wavefunctions. The most dominant effect originates from the self-energy of the core-electron that yields corrections of similar order as the transverse interaction. For 1s ionization potentials, a match within few eV against the known experimental values is obtained, and our work reveals considerable QED effects in the photoelectron binding energies across the periodic table-most strikingly even for Ne. We perform power-law fits for the corrections as a function of Z and interpolate the QED correction of ∼-0.55 eV for S1s. Due to this, the K-edge electron spectra of the third row and below need QED for a match in the absolute energy when using state-of-the-art instrumentation.
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Affiliation(s)
- J Niskanen
- Helmholtz Zentrum Berlin für Materialien und Energie, Institute for Methods and Instrumentation for Synchrotron Radiation Research, Albert-Einstein-St. 15, D-12489 Berlin, Germany
| | - K Jänkälä
- Nano and Molecular Systems Research Unit, University of Oulu, P.O. Box 3000, 90014 Oulu, Finland
| | - M Huttula
- Nano and Molecular Systems Research Unit, University of Oulu, P.O. Box 3000, 90014 Oulu, Finland
| | - A Föhlisch
- Helmholtz Zentrum Berlin für Materialien und Energie, Institute for Methods and Instrumentation for Synchrotron Radiation Research, Albert-Einstein-St. 15, D-12489 Berlin, Germany
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8
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Sahle CJ, Henriquet C, Schroer MA, Juurinen I, Niskanen J, Krisch M. A miniature closed-circle flow cell for high photon flux X-ray scattering experiments. J Synchrotron Radiat 2015; 22:1555-1558. [PMID: 26524322 DOI: 10.1107/s1600577515016331] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2015] [Accepted: 09/01/2015] [Indexed: 06/05/2023]
Abstract
A closed-circle miniature flow cell for high X-ray photon flux experiments on radiation-sensitive liquid samples is presented. The compact cell is made from highly inert material and the flow is induced by a rotating magnetic stir bar, which acts as a centrifugal pump inside the cell. The cell is ideal for radiation-sensitive yet precious or hazardous liquid samples, such as concentrated acids or bases. As a demonstration of the cell's capabilities, X-ray Raman scattering spectroscopy data on the oxygen K-edge of liquid water under ambient conditions are presented.
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Affiliation(s)
- Ch J Sahle
- ESRF - The European Synchrotron, CS 40220, 38043 Grenoble Cedex 9, France
| | - C Henriquet
- ESRF - The European Synchrotron, CS 40220, 38043 Grenoble Cedex 9, France
| | - M A Schroer
- Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
| | - I Juurinen
- Department of Physics, University of Helsinki, Helsinki, Finland
| | - J Niskanen
- Department of Physics, University of Helsinki, Helsinki, Finland
| | - M Krisch
- ESRF - The European Synchrotron, CS 40220, 38043 Grenoble Cedex 9, France
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9
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Sahle CJ, Mirone A, Niskanen J, Inkinen J, Krisch M, Huotari S. Planning, performing and analyzing X-ray Raman scattering experiments. J Synchrotron Radiat 2015; 22:400-409. [PMID: 25723942 PMCID: PMC4786055 DOI: 10.1107/s1600577514027581] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2014] [Accepted: 12/17/2014] [Indexed: 06/01/2023]
Abstract
A compilation of procedures for planning and performing X-ray Raman scattering (XRS) experiments and analyzing data obtained from them is presented. In particular, it is demonstrated how to predict the overall shape of the spectra, estimate detection limits for dilute samples, and how to normalize the recorded spectra to absolute units. In addition, methods for processing data from multiple-crystal XRS spectrometers with imaging capability are presented, including a super-resolution method that can be used for direct tomography using XRS spectra as the contrast. An open-source software package with these procedures implemented is also made available.
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Affiliation(s)
- Ch. J. Sahle
- Department of Physics, PO Box 64, FI-00014 University of Helsinki, Helsinki, Finland
- European Synchrotron Radiation Facility, BP 220, F-38043 Grenoble Cedex, France
| | - A. Mirone
- European Synchrotron Radiation Facility, BP 220, F-38043 Grenoble Cedex, France
| | - J. Niskanen
- Department of Physics, PO Box 64, FI-00014 University of Helsinki, Helsinki, Finland
| | - J. Inkinen
- Department of Physics, PO Box 64, FI-00014 University of Helsinki, Helsinki, Finland
| | - M. Krisch
- European Synchrotron Radiation Facility, BP 220, F-38043 Grenoble Cedex, France
| | - S. Huotari
- Department of Physics, PO Box 64, FI-00014 University of Helsinki, Helsinki, Finland
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10
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Löytynoja T, Niskanen J, Jänkälä K, Vahtras O, Rinkevicius Z, Ågren H. Quantum Mechanics/Molecular Mechanics Modeling of Photoelectron Spectra: The Carbon 1s Core–Electron Binding Energies of Ethanol–Water Solutions. J Phys Chem B 2014; 118:13217-25. [DOI: 10.1021/jp506410w] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- T. Löytynoja
- Department
of Physics, University of Oulu, P.O. Box 3000, FI-90014 University of Oulu, Finland
- Division of Theoretical Chemistry & Biology, School of Biotechnology, Royal Institute of Technology, S-106 91 Stockholm, Sweden
| | - J. Niskanen
- Department
of Physics, University of Helsinki, P.O. Box 64, FI-00014 University of Helsinki, Finland
| | - K. Jänkälä
- Department
of Physics, University of Oulu, P.O. Box 3000, FI-90014 University of Oulu, Finland
| | - O. Vahtras
- Division of Theoretical Chemistry & Biology, School of Biotechnology, Royal Institute of Technology, S-106 91 Stockholm, Sweden
| | - Z. Rinkevicius
- Division of Theoretical Chemistry & Biology, School of Biotechnology, Royal Institute of Technology, S-106 91 Stockholm, Sweden
- Swedish
e-Science Research Centre (SeRC), KTH Royal Institute of Technology, S-100 44 Stockholm, Sweden
| | - H. Ågren
- Division of Theoretical Chemistry & Biology, School of Biotechnology, Royal Institute of Technology, S-106 91 Stockholm, Sweden
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11
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Mäkinen A, Niskanen J, Tikkala H, Aksela H. Optical emission from a small scale model electric arc furnace in 250-600 nm region. Rev Sci Instrum 2013; 84:043111. [PMID: 23635185 DOI: 10.1063/1.4802833] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Optical emission spectroscopy has been for long proposed for monitoring and studying industrial steel making processes. Whereas the radiative decay of thermal excitations is always taking place in high temperatures needed in steel production, one of the most promising environment for such studies are electric arc furnaces, creating plasma in excited electronic states that relax with intense characteristic emission in the optical regime. Unfortunately, large industrial scale electric arc furnaces also present a challenging environment for optical emission studies and application of the method is not straightforward. To study the usability of optical emission spectroscopy in real electric arc furnaces, we have developed a laboratory scale DC electric arc furnace presented in this paper. With the setup, optical emission spectra of Fe, Cr, Cr2O3, Ni, SiO2, Al2O3, CaO, and MgO were recorded in the wavelength range 250-600 nm and the results were analyzed with the help of reference data. The work demonstrates that using characteristic optical emission, obtaining in situ chemical information from oscillating plasma of electric arc furnaces is indeed possible. In spite of complications, the method could possibly be applied to industrial scale steel making process in order to improve its efficiency.
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Affiliation(s)
- A Mäkinen
- Department of Physics, University of Oulu, Oulu, Finland.
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12
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Inkinen J, Sakko A, Ruotsalainen KO, Pylkkänen T, Niskanen J, Galambosi S, Hakala M, Monaco G, Huotari S, Hämäläinen K. Temperature dependence of CO2 and N2 core-electron excitation spectra at high pressure. Phys Chem Chem Phys 2013; 15:9231-8. [DOI: 10.1039/c3cp50512j] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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13
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McKee JR, Ladmiral V, Niskanen J, Tenhu H, Armes SP. Synthesis of Sterically-Stabilized Polystyrene Latexes Using Well-Defined Thermoresponsive Poly(N-isopropylacrylamide) Macromonomers. Macromolecules 2011. [DOI: 10.1021/ma2016584] [Citation(s) in RCA: 67] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- J. R. McKee
- Department of Chemistry, University of Sheffield, Brook Hill, Sheffield, South Yorkshire, S3 7HF, U.K
- Department of Chemistry, University of Helsinki, PB 55, FIN-00014 HY Helsinki, Finland
| | - V. Ladmiral
- Department of Chemistry, University of Sheffield, Brook Hill, Sheffield, South Yorkshire, S3 7HF, U.K
| | - J. Niskanen
- Department of Chemistry, University of Helsinki, PB 55, FIN-00014 HY Helsinki, Finland
| | - H. Tenhu
- Department of Chemistry, University of Helsinki, PB 55, FIN-00014 HY Helsinki, Finland
| | - S. P. Armes
- Department of Chemistry, University of Sheffield, Brook Hill, Sheffield, South Yorkshire, S3 7HF, U.K
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14
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Kettunen JA, Niskanen J, Huttula M, Vapa M, Urpelainen S, Aksela H. Electron-ion coincidence study of photofragmentation of the CdCl(2) molecule. J Mass Spectrom 2011; 46:901-907. [PMID: 21915954 DOI: 10.1002/jms.1967] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
In this work, the photofragmentation subsequent to valence and Cd4d photoionization of cadmium dichloride (CdCl(2)) were studied using He I and synchrotron excitation. The measurements were performed with a photoelectron-photoion coincidence (PEPICO) setup, and the connection between the singly ionized electronic states and cationic fragments was investigated. The valence-ionized states were found to lead to CdCl(2)(+), Cd(+) and CdCl(+). The Cd4d(- 1) states were found to lead only to Cl(+) ions. The observed charge transfer effect between Cd and Cl was concluded to take place due to internal conversion or fluorescence decay to dissociating valence states either directly or through consecutive fragmentation. The fragmentation energetics were investigated with molecular ab initio calculations, and the calculated energies were found to agree with the detected fragment appearances.
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Affiliation(s)
- J A Kettunen
- Department of Physics, University of Oulu, P.O. Box 3000, FIN-90014, University of Oulu, Finland.
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15
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Niskanen J, Norman P, Aksela H, Agren H. Relativistic contributions to single and double core electron ionization energies of noble gases. J Chem Phys 2011; 135:054310. [PMID: 21823703 DOI: 10.1063/1.3621833] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- J Niskanen
- Department of Physics, University of Oulu, Oulu, Finland.
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16
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Andersson E, Niskanen J, Hedin L, Eland JHD, Linusson P, Karlsson L, Rubensson JE, Carravetta V, Agren H, Feifel R. Core-valence double photoionization of the CS(2) molecule. J Chem Phys 2010; 133:094305. [PMID: 20831316 DOI: 10.1063/1.3469812] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Double photoionization spectra of the CS(2) molecule have been recorded using the TOF-PEPECO technique in combination with synchrotron radiation at the photon energies hν=220, 230, 240, 243, and 362.7 eV. The spectra were recorded in the S 2p and C 1s inner-shell ionization regions and reflect dicationic states formed out of one inner-shell vacancy and one vacancy in the valence region. MCSCF calculations were performed to model the energies of the dicationic states. The spectra associated with a S 2p vacancy are well structured and have been interpreted in some detail by comparison to conventional S 2p and valence photoelectron spectra. The lowest inner-shell-valence dicationic state is observed at the vertical double ionization energy 188.45 eV and is associated with a (2p(3/2))(-1)(2π(g))(-1) double vacancy. The spectrum connected to the C 1s vacancy shows a distinct line at 310.8 eV, accompanied by additional broad features at higher double ionization energies. This line is associated with a (C 1s)(-1)(2π(g))(-1) double vacancy.
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Affiliation(s)
- E Andersson
- Department of Physics and Astronomy, Uppsala University, Box 516, SE-751 20 Uppsala, Sweden
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17
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Niskanen J, Marniemi J, Piironen O, Maatela J, Mäki J, Vuori I, Seppänen A, Kallio V, Aromaa A. Trace element levels in serum and urine of subjects died of coronary heart disease. Acta Pharmacol Toxicol (Copenh) 2009; 59 Suppl 7:340-3. [PMID: 3776585 DOI: 10.1111/j.1600-0773.1986.tb02775.x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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18
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Kala R, Niskanen J. [An odd ECG]. Duodecim 2002; 115:2681, 2685. [PMID: 11974077] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/24/2023]
Affiliation(s)
- R Kala
- Helsingin sairaanhoitopiirin sisätautitoimintojen yksikkö Marian sairaala 00180 Helsinki
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19
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Abstract
The purpose of this study was to find out the proper ways to promote and to start a noise control programme in small and medium size industries. The situation of the noise control programme was inspected in four industrial enterprises. The noise exposure and the noise sources were studied and recommendations for noise reduction were given. The information concerning the noise control programme and noise levels was given to the personnel. How the noise control programme was started in the companies and which were the best ways to promote the programme were examined after 1 year. Noise reduction work was carried out in companies during the past year and new ideas were awaiting investment. The systematic noise control programme was not written on paper or connected to a risk management programme. The lack of proper models of a programme, lack of time and knowledge of easy means to reduce the noise were reasons for missing noise control programmes. The best ways to push up the noise control programme were to give information and examples of the programme. The EU-directive concerning machines and its noise information was a help in the noise reduction work connected with new investments.
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Affiliation(s)
- J Niskanen
- Oulu Regional Institute of Occupational Health, Finland.
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20
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Abstract
We have measured non-evaporative, cutaneous heat loss using heat flux transducers at eight skin sites in five children during anaesthesia and compared the data with basal metabolic heat production. The effect of disposable surgical covering and a radiant heater on heat flux was examined. The mean total heat flow rate before draping was 3-9 W higher than the basal metabolic rate after induction of anaesthesia with a simultaneous decrease in rectal temperature. Mean cutaneous heat loss was 62 (SD 9) W m-2 (9.5 (2.1) kJ kg-1 h-1) in children older than 1 yr and 84 W m-2 (17.2 kJ kg-1 h-1) in a 3-month-old infant. Disposable drapes diminished cutaneous heat loss by 29% and a radian heater by 77%. Heat conduction to the mattress was 21 (7) W m-2. These results showed that the decrease in core temperature after induction of anaesthesia was genuine cooling, that is heat loss exceeded heat production.
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Affiliation(s)
- H Anttonen
- Oulu Regional Institute of Occupational Health, Finland
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21
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Virokannas H, Anttonen H, Niskanen J. Vibration syndrome in railway track maintenance workers. Cent Eur J Public Health 1995; 3 Suppl:109-12. [PMID: 9150986] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
An inquiry was sent to all railway maintenance workers in three railway districts in Finland and hand-arm vibration was measured on the handlebars of tools used by maintenance workers. The study group included 252 (82%) subjects, whose mean age was 41 years and who had worked in track maintenance for 14 years (SD 9). In Finland there are over 600 railway maintenance workers who use vibrating tools. The frequency-weighted acceleration of hand-arm vibration was calculated according to the ISO 5349 standard. Hand-held tamping machines had caused most of the vibration exposure, and aw4h was 10.6 m/s2 measured on the handlebar of tamping machine, but many workers also used other vibrating tools. The annual vibration level was 2.5 m/s2 when the use of all vibrating tools and the exposure time was taken into account. In the questionnaire the prevalence of vibration-induced white finger (VWF) was 14% in the entire material, and the prevalence of VWF increased significantly with the total duration of the maintenance work. In addition, 39% of the subjects had suffered numbness of the hands, and the prevalence of hand numbness also increased significantly with the total duration of maintenance work. According to the measurements of vibration and the prevalence of hand symptoms the present investigation indicates vibration syndrome as being related to railway track maintenance work. In the exposure group, where tamping machines mainly were used and exposure to other vibration was small, the prevalence of VWF was also significantly higher, but the prevalence of hand numbness insignificant compared with the control group. In this study vascular and nerve hand symptoms were considered to cause serious trouble in work by 4-11% of the maintenance workers.
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Affiliation(s)
- H Virokannas
- Department of Public Health Science and General Practice, University of Oulu, Finland
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22
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Anttonen H, Virokannas H, Niskanen J. Hand-arm vibration and terrain vehicles. Cent Eur J Public Health 1995; 3 Suppl:123-5. [PMID: 9150990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Hand-arm vibration was measured on the handlebars of terrain vehicles (N = 36) and a postal inquiry was made among N = 2705 reindeer herders (snowmobile drivers). Since many subjects had also used other vibrating tools the snowmobile group proper (N = 334) was established. In the whole group 19% of the subjects reported having experienced white finger attacks and 48% numbness of the hands. The frequency-weighted acceleration of snowmobile vibration was 3.5 m/s2, and risk evaluation using the ISO 5349 standard predicted the prevalence of white finger well in the snowmobile group proper. The vibration levels were 1.6-7.9 m/s2 on snowmobiles, 5.5-11.8 m/s2 on all-terrain vehicles and 6.9-12.7 m/s2 on terrain motorcycles. The most critical points for damping the vibration were the motor mounting and resonance in the steering yoke. There is need for health care, technical improvements, and other protection means to reduce the symptoms of vibration in driving terrain vehicles.
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Affiliation(s)
- H Anttonen
- Oulu Regional Institute of Occupational Health, Finland
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23
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Puhakka K, Anttonen H, Niskanen J, Ryhänen P. Calculation of mean skin temperature and changes in body heat content during paediatric anaesthesia. Br J Anaesth 1994; 72:548-53. [PMID: 8198907 DOI: 10.1093/bja/72.5.548] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
Abstract
Mean skin temperature and changes in body heat content were calculated in several different ways from measurements made in five children during operation. Mean skin temperatures were calculated from 162 sets of measurements using 15, 12, eight, seven and four skin sites with various formulae modified according to age. The results of other formulae were compared with age-adjusted, area-weighted 15-site mean skin temperature which was used as a reference. Changes in body heat content were calculated from Burton's equation in different ways and errors from different variables in the formula were evaluated. Mean skin temperature from 12 skin sites was within 0.5 degrees C of the 15-point reference method, and that from four sites within 1 degree C. The core temperature selected and the weighting coefficients used in calculating mean body temperature were more important sources of error in the determination of change in body heat content than was mean skin temperature.
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Affiliation(s)
- K Puhakka
- Department of Anaesthesiology, Oulu University Central Hospital, Finland
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24
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Vihinen M, Ollikka P, Niskanen J, Meyer P, Suominen I, Karp M, Holm L, Knowles J, Mäntsälä P. Site-directed mutagenesis of a thermostable alpha-amylase from Bacillus stearothermophilus: putative role of three conserved residues. J Biochem 1990; 107:267-72. [PMID: 1694530 DOI: 10.1093/oxfordjournals.jbchem.a123037] [Citation(s) in RCA: 62] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
The relationship between structure, activity, and stability of the thermostable Bacillus stearothermophilus alpha-amylase was studied by site-directed mutagenesis of the three most conserved residues. Mutation of His-238 to Asp involved in Ca2+ and substrate binding reduced the specific activity and thermal stability, but did not affect the pH and temperature optima. Replacement of Asp-331 by Glu in the active site caused almost total inactivation. Interestingly, in prolonged incubation this mutant enzyme showed an altered end-product profile by liberating only maltose and maltotriose. Conservative mutation of the conserved Arg-232 by Lys, for which no function has yet been proposed, resulted in lowered specific activity: around 12% of the parental enzyme. This mutant enzyme had a wider pH range but about the same temperature optimum and thermal stability as the wild-type enzyme. Results obtained with different mutants were interpreted by computer aided molecular modeling.
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Affiliation(s)
- M Vihinen
- Department of Biochemistry, University of Turku, Finland
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25
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Lehtonen A, Grönroos M, Marniemi J, Peltonen P, Mäntylä M, Niskanen J, Rautio A, Hietanen E. Effects of high dose progestin on serum lipids and lipid metabolizing enzymes in patients with endometrial cancer. Horm Metab Res 1985; 17:32-4. [PMID: 3155702 DOI: 10.1055/s-2007-1013440] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
The effect of high dose medroxyprogesterone acetate (MPA) on serum lipids, on adipose tissue lipoprotein lipase (LPL) and serum lecithin cholesterol acyltransferase activities were studied in 15 postmenopausal patients with endometrial cancer. After 2 weeks of MPA treatment total cholesterol decreased by 14% (P less than 0.001) and HDL cholesterol by 33% (P less than 0.01) from the respective pretreatment values; correspondingly the ratio of HDL to total cholesterol decreased (P less than 0.05). The decrease of HDL2 cholesterol was 35% (P less than 0.01) and that of HDL3 cholesterol 15% (P less than 0.01). The levels of serum triglycerides decreased significantly (P less than 0.05) during the treatment period. Serum LCAT activity was significantly lower (P less than 0.05) after treatment than before, but adipose tissue LPL activity was not altered. The mean serum testosterone level decreased significantly (P less than 0.001) from the pretreatment values. Significant positive correlations were present between LPL activity and MPA concentrations and between LPL activity and testosterone concentrations after the drug treatment.
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Abstract
1 The effect on plasma lipids of pindolol given orally over a 6 month period to 20 patients with essential hypertension was studied. 2 During therapy an adipose tissue biopsy was taken from nine patients for the determination of lipoprotein lipase (LPL) activity and serum samples were taken for lecithin cholesterol acyltransferase (LCAT) assays. An additional biopsy and serum samples were taken after a 3 weeks' break in pindolol treatment. 3 Plasma free fatty acid and triglyceride concentrations remained similar during treatment. 4 Plasma total cholesterol was slightly lower (P less than 0.05) at 6 months than at 1 month. 5 HDL cholesterol concentration and the ratio of HDL to total cholesterol increased slightly, and the increase of HDL-cholesterol was significant (P less than 0.05) at 1 month. 6 LCAT activity was significantly higher (P less than 0.01) during pindolol treatment than after the break in it. No significant changes in adipose tissue LPL activities were found before and after the break of treatment.
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Kremser G, Bjordal J, Block LP, Brønstad K, Håvåg M, Iversen IB, Kangas J, Korth A, Madsen MM, Niskanen J, Riedler W, Stadsnes J, Tanskanen P, Torkar KM, Ullaland SL. Coordinated balloon-satellite observations of energetic particles at the onset of a magnetospheric substorm. ACTA ACUST UNITED AC 1982. [DOI: 10.1029/ja087ia06p04445] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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