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Shea D, Bateman A, Li S, Tabata A, Schulze A, Mordecai G, Ogston L, Volpe JP, Neil Frazer L, Connors B, Miller KM, Short S, Krkošek M. Environmental DNA from multiple pathogens is elevated near active Atlantic salmon farms. Proc Biol Sci 2020; 287:20202010. [PMID: 33081614 PMCID: PMC7661312 DOI: 10.1098/rspb.2020.2010] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023] Open
Abstract
The spread of infection from reservoir host populations is a key mechanism for disease emergence and extinction risk and is a management concern for salmon aquaculture and fisheries. Using a quantitative environmental DNA methodology, we assessed pathogen environmental DNA in relation to salmon farms in coastal British Columbia, Canada, by testing for 39 species of salmon pathogens (viral, bacterial, and eukaryotic) in 134 marine environmental samples at 58 salmon farm sites (both active and inactive) over 3 years. Environmental DNA from 22 pathogen species was detected 496 times and species varied in their occurrence among years and sites, likely reflecting variation in environmental factors, other native host species, and strength of association with domesticated Atlantic salmon. Overall, we found that the probability of detecting pathogen environmental DNA (eDNA) was 2.72 (95% CI: 1.48, 5.02) times higher at active versus inactive salmon farm sites and 1.76 (95% CI: 1.28, 2.42) times higher per standard deviation increase in domesticated Atlantic salmon eDNA concentration at a site. If the distribution of pathogen eDNA accurately reflects the distribution of viable pathogens, our findings suggest that salmon farms serve as a potential reservoir for a number of infectious agents; thereby elevating the risk of exposure for wild salmon and other fish species that share the marine environment.
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Affiliation(s)
- Dylan Shea
- Department of Ecology and Evolutionary Biology, University of Toronto, Ontario, Canada
| | - Andrew Bateman
- Department of Ecology and Evolutionary Biology, University of Toronto, Ontario, Canada.,Salmon Coast Field Station, Simoom Sound, British Columbia, Canada.,Pacific Salmon Foundation, Vancouver, British Columbia, Canada
| | - Shaorong Li
- Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, British Columbia, Canada
| | - Amy Tabata
- Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, British Columbia, Canada
| | - Angela Schulze
- Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, British Columbia, Canada
| | - Gideon Mordecai
- Department of Medicine, University of British Columbia, Vancouver, British Columbia, Canada
| | - Lindsey Ogston
- Department of Ecology and Evolutionary Biology, University of Toronto, Ontario, Canada
| | - John P Volpe
- School of Environmental Studies, University of Victoria, Victoria, British Columbia, Canada
| | - L Neil Frazer
- Department of Earth Sciences, University of Hawaii at Mānoa, Honolulu, Hawaii, Canada
| | - Brendan Connors
- Institute of Ocean Sciences, Fisheries and Oceans Canada, Sidney, British Columbia, Canada
| | - Kristina M Miller
- Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, British Columbia, Canada
| | - Steven Short
- Department of Ecology and Evolutionary Biology, University of Toronto, Ontario, Canada.,Department of Biology, University of Toronto Mississauga, Mississauga, British Columbia, Canada
| | - Martin Krkošek
- Department of Ecology and Evolutionary Biology, University of Toronto, Ontario, Canada.,Salmon Coast Field Station, Simoom Sound, British Columbia, Canada
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Bulger DS, Volpe JP, Fisher JT. Differences in fish communities on natural versus artificial temperate reefs, groundfish conservation applications in British Columbia. Mar Environ Res 2019; 152:104788. [PMID: 31630845 DOI: 10.1016/j.marenvres.2019.104788] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2019] [Revised: 09/05/2019] [Accepted: 09/07/2019] [Indexed: 06/10/2023]
Abstract
Human-made marine habitats such as artificial reefs are used to mitigate marine habitat degradation and aid conservation of species at risk. We used ROV and sonar to survey threatened rockfish (Sebastes spp.) and other groundfish species associated with 18 artificial and natural reefs along the south coast of BC, Canada. Using an information-theoretic approach, we found that community composition significantly differed between natural and artificial reefs. Artificial reefs had high variability in rockfish abundance, some supporting very high or low relative abundance. Natural reefs consistently supported intermediate rockfish abundances. Groundfish diversity was significantly greater on natural reefs than artificial reefs. Depth and relief were significant predictors for both abundance and species richness. Interestingly, rockfish abundance was negatively associated with proximity to nearest rockfish conservation area. This research is a first step in understanding causal mechanisms leading to differences between fish communities on artificial reefs in our study system, and which reef attributes may facilitate successful contributions to conservation. Though artificial reefs show promise in the conservation of some threatened species, the maintenance of diverse fish communities depends on protection of heterogenous natural reef communities.
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Affiliation(s)
- D S Bulger
- School of Environmental Studies, University of Victoria, 3800 Finnerty Rd., Victoria, BC, V8W 2Y2, Canada.
| | - J P Volpe
- School of Environmental Studies, University of Victoria, 3800 Finnerty Rd., Victoria, BC, V8W 2Y2, Canada
| | - J T Fisher
- School of Environmental Studies, University of Victoria, 3800 Finnerty Rd., Victoria, BC, V8W 2Y2, Canada; Ecosystem Management Unit, InnoTech Alberta, 3-4476 Markham St., Victoria, BC, V8Z 7X8, Canada
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Affiliation(s)
- Frances E. C. Stewart
- University of Victoria, School of Environmental Studies 3800 Finnerty Rd Victoria BC V8W 2L7 Canada
| | - John P. Volpe
- University of Victoria, School of Environmental Studies 3800 Finnerty Rd Victoria BC V8W 2L7 Canada
| | - Jason T. Fisher
- Ecosystem Management Unit InnoTech Alberta 3‐4476 Markham St Victoria BC V8Z 7X8 Canada
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Burgar JM, Stewart FE, Volpe JP, Fisher JT, Burton AC. Estimating density for species conservation: Comparing camera trap spatial count models to genetic spatial capture-recapture models. Glob Ecol Conserv 2018. [DOI: 10.1016/j.gecco.2018.e00411] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
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Stewart FEC, Fisher JT, Burton AC, Volpe JP. Species occurrence data reflect the magnitude of animal movements better than the proximity of animal space use. Ecosphere 2018. [DOI: 10.1002/ecs2.2112] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Affiliation(s)
- Frances E. C. Stewart
- School of Environmental Studies; University of Victoria; 3800 Finnerty Road Victoria British Columbia V8W 2Y2 Canada
| | - Jason T. Fisher
- School of Environmental Studies; University of Victoria; 3800 Finnerty Road Victoria British Columbia V8W 2Y2 Canada
- Ecosystem Management Unit; InnoTech Alberta; 3-4476 Markham Street Victoria British Columbia V8Z 7X8 Canada
| | - A. Cole Burton
- Department of Forest Resources Management; University of British Columbia; 2424 Main Mall Vancouver British Columbia V6T 1Z4 Canada
| | - John P. Volpe
- School of Environmental Studies; University of Victoria; 3800 Finnerty Road Victoria British Columbia V8W 2Y2 Canada
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Stewart FEC, Heim NA, Clevenger AP, Paczkowski J, Volpe JP, Fisher JT. Wolverine behavior varies spatially with anthropogenic footprint: implications for conservation and inferences about declines. Ecol Evol 2016; 6:1493-503. [PMID: 26900450 PMCID: PMC4747315 DOI: 10.1002/ece3.1921] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2015] [Revised: 11/07/2015] [Accepted: 11/25/2015] [Indexed: 11/10/2022] Open
Abstract
Understanding a species’ behavioral response to rapid environmental change is an ongoing challenge in modern conservation. Anthropogenic landscape modification, or “human footprint,” is well documented as a central cause of large mammal decline and range contractions where the proximal mechanisms of decline are often contentious. Direct mortality is an obvious cause; alternatively, human‐modified landscapes perceived as unsuitable by some species may contribute to shifts in space use through preferential habitat selection. A useful approach to tease these effects apart is to determine whether behaviors potentially associated with risk vary with human footprint. We hypothesized wolverine (Gulo gulo) behaviors vary with different degrees of human footprint. We quantified metrics of behavior, which we assumed to indicate risk perception, from photographic images from a large existing camera‐trapping dataset collected to understand wolverine distribution in the Rocky Mountains of Alberta, Canada. We systematically deployed 164 camera sites across three study areas covering approximately 24,000 km2, sampled monthly between December and April (2007–2013). Wolverine behavior varied markedly across the study areas. Variation in behavior decreased with increasing human footprint. Increasing human footprint may constrain potential variation in behavior, through either restricting behavioral plasticity or individual variation in areas of high human impact. We hypothesize that behavioral constraints may indicate an increase in perceived risk in human‐modified landscapes. Although survival is obviously a key contributor to species population decline and range loss, behavior may also make a significant contribution.
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Affiliation(s)
- Frances E C Stewart
- School of Environmental Studies University of Victoria 3800 Finnerty Rd. Victoria BC Canada V8W 2Y2
| | - Nicole A Heim
- School of Environmental Studies University of Victoria 3800 Finnerty Rd. Victoria BC Canada V8W 2Y2
| | - Anthony P Clevenger
- Western Transportation Institute Montana State University PO Box 174250 Bozeman Montana 59717
| | - John Paczkowski
- Alberta Environment and Parks Parks Division Kananaskis Region, Suite 201 800 Railway Avenue Canmore AB Canada T1W 1P1
| | - John P Volpe
- School of Environmental Studies University of Victoria 3800 Finnerty Rd. Victoria BC Canada V8W 2Y2
| | - Jason T Fisher
- School of Environmental Studies University of Victoria 3800 Finnerty Rd. Victoria BC Canada V8W 2Y2; Ecosystem Management Unit Alberta Innovates-Technology Futures 3-4476 Markham St. Victoria BC Canada V8Z 7X8
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Abstract
The transmission of pathogens is a common consequence of animal food production. Marine salmon farms and their processing facilities can serve as sources of virulent fish pathogens; our study is the first to confirm the broadcast of a live fish pathogen from a farmed salmon processing facility into the marine waters of Canada's Pacific coast. We found live salmon lice Lepeophtheirus salmonis, mucus, and fish tissue in effluent from the processing facility. Sea lice transmitted from this source may pose a threat to wild salmon populations, and the release of untreated offal, including blood water, is of considerable concern. Further research is needed to quantify the extent to which processing facilities release sea lice and to determine whether more virulent fish pathogens are present in effluent. These data underscore the need for fish farming nations to develop mandatory biosecurity programs to ensure that farmed salmon processing facilities will prevent the broadcast of infectious fish pathogens into wild fish habitat.
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Affiliation(s)
- M H H Price
- a Department of Biology, University of Victoria , Post Office Box 3020, Station CSC , Victoria , British Columbia , V8W 3N5 , Canada
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Fisher JT, Anholt B, Volpe JP. Body mass explains characteristic scales of habitat selection in terrestrial mammals. Ecol Evol 2012; 1:517-28. [PMID: 22393519 PMCID: PMC3287334 DOI: 10.1002/ece3.45] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2011] [Revised: 08/31/2011] [Accepted: 09/02/2011] [Indexed: 11/07/2022] Open
Abstract
Niche theory in its various forms is based on those environmental factors that permit species persistence, but less work has focused on defining the extent, or size, of a species’ environment: the area that explains a species’ presence at a point in space. We proposed that this habitat extent is identifiable from a characteristic scale of habitat selection, the spatial scale at which habitat best explains species’ occurrence. We hypothesized that this scale is predicted by body size. We tested this hypothesis on 12 sympatric terrestrial mammal species in the Canadian Rocky Mountains. For each species, habitat models varied across the 20 spatial scales tested. For six species, we found a characteristic scale; this scale was explained by species’ body mass in a quadratic relationship. Habitat measured at large scales best-predicted habitat selection in both large and small species, and small scales predict habitat extent in medium-sized species. The relationship between body size and habitat selection scale implies evolutionary adaptation to landscape heterogeneity as the driver of scale-dependent habitat selection.
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Affiliation(s)
- Jason T Fisher
- Alberta Innovates – Technology Futures, Ecosystem Management UnitVictoria, British Columbia, Canada
- University of Victoria, Department of BiologyVictoria, British Columbia, Canada
- University of Victoria, School of Environmental StudiesVictoria, British Columbia, Canada
| | - Brad Anholt
- University of Victoria, Department of BiologyVictoria, British Columbia, Canada
- Bamfield Marine Sciences CentreBamfield, British Columbia, Canada
| | - John P Volpe
- University of Victoria, School of Environmental StudiesVictoria, British Columbia, Canada
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Krkosek M, Connors BM, Ford H, Peacock S, Mages P, Ford JS, Morton A, Volpe JP, Hilborn R, Dill LM, Lewis MA. Fish farms, parasites, and predators: implications for salmon population dynamics. Ecol Appl 2011; 21:897-914. [PMID: 21639053 DOI: 10.1890/09-1861.1] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
For some salmon populations, the individual and population effects of sea lice (Lepeophtheirus salmonis) transmission from sea cage salmon farms is probably mediated by predation, which is a primary natural source of mortality of juvenile salmon. We examined how sea lice infestation affects predation risk and mortality of juvenile pink (Oncorhynchus gorbuscha) and chum (O. keta) salmon, and developed a mathematical model to assess the implications for population dynamics and conservation. A risk-taking experiment indicated that infected juvenile pink salmon accept a higher predation risk in order to obtain foraging opportunities. In a schooling experiment with juvenile chum salmon, infected individuals had increased nearest-neighbor distances and occupied peripheral positions in the school. Prey selection experiments with cutthroat trout (O. clarkii) predators indicated that infection reduces the ability of juvenile pink salmon to evade a predatory strike. Group predation experiments with coho salmon (O. kisutch) feeding on juvenile pink or chum salmon indicated that predators selectively consume infected prey. The experimental results indicate that lice may increase the rate of prey capture but not the handling time of a predator. Based on this result, we developed a mathematical model of sea lice and salmon population dynamics in which parasitism affects the attack rate in a type II functional response. Analysis of the model indicates that: (1) the estimated mortality of wild juvenile salmon due to sea lice infestation is probably higher than previously thought; (2) predation can cause a simultaneous decline in sea louse abundance on wild fish and salmon productivity that could mislead managers and regulators; and (3) compensatory mortality occurs in the saturation region of the type II functional response where prey are abundant because predators increase mortality of parasites but not overall predation rates. These findings indicate that predation is an important component of salmon-louse dynamics and has implications for estimating mortality, reducing infection, and developing conservation policy.
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Affiliation(s)
- Martin Krkosek
- Centre for Mathematical Biology, Department of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2G1, Canada.
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10
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Abstract
The ecological impact of parasite transmission from fish farms is probably mediated by the migration of wild fishes, which determines the period of exposure to parasites. For Pacific salmon and the parasitic sea louse, Lepeophtheirus salmonis, analysis of the exposure period may resolve conflicting observations of epizootic mortality in field studies and parasite rejection in experiments. This is because exposure periods can differ by 2-3 orders of magnitude, ranging from months in the field to hours in experiments. We developed a mathematical model of salmon-louse population dynamics, parametrized by a study that monitored naturally infected juvenile salmon held in ocean enclosures. Analysis of replicated trials indicates that lice suffer high mortality, particularly during pre-adult stages. The model suggests louse populations rapidly decline following brief exposure of juvenile salmon, similar to laboratory study designs and data. However, when the exposure period lasts for several weeks, as occurs when juvenile salmon migrate past salmon farms, the model predicts that lice accumulate to abundances that can elevate salmon mortality and depress salmon populations. The duration of parasite exposure is probably critical to salmon-louse population dynamics, and should therefore be accommodated in coastal planning and management where fish farms are situated on wild fish migration routes.
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Affiliation(s)
- Martin Krkosek
- Department of Mathematical and Statistical Sciences, University of Alberta, Edmonton, Alberta T6G 2R3, Canada.
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11
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Krkošek M, Lewis MA, Volpe JP, Morton A. Fish Farms and Sea Lice Infestations of Wild Juvenile Salmon in the Broughton Archipelago—A Rebuttal to. ACTA ACUST UNITED AC 2007. [DOI: 10.1080/10641260500433531] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Abstract
The continuing decline of ocean fisheries and rise of global fish consumption has driven aquaculture growth by 10% annually over the last decade. The association of fish farms with disease emergence in sympatric wild fish stocks remains one of the most controversial and unresolved threats aquaculture poses to coastal ecosystems and fisheries. We report a comprehensive analysis of the spread and impact of farm-origin parasites on the survival of wild fish populations. We mathematically coupled extensive data sets of native parasitic sea lice (Lepeophtheirus salmonis) transmission and pathogenicity on migratory wild juvenile pink (Oncorhynchus gorbuscha) and chum (Oncorhynchus keta) salmon. Farm-origin lice induced 9-95% mortality in several sympatric wild juvenile pink and chum salmon populations. The epizootics arise through a mechanism that is new to our understanding of emerging infectious diseases: fish farms undermine a functional role of host migration in protecting juvenile hosts from parasites associated with adult hosts. Although the migratory life cycles of Pacific salmon naturally separate adults from juveniles, fish farms provide L. salmonis novel access to juvenile hosts, in this case raising infection rates for at least the first approximately 2.5 months of the salmon's marine life (approximately 80 km of the migration route). Spatial segregation between juveniles and adults is common among temperate marine fishes, and as aquaculture continues its rapid growth, this disease mechanism may challenge the sustainability of coastal ecosystems and economies.
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Affiliation(s)
- Martin Krkosek
- Centre for Mathematical Biology, Department of Mathematical and Statistical Sciences, University of Alberta, Edmonton, AB, Canada T6G 1G1.
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Abstract
Marine salmon farming has been correlated with parasitic sea lice infestations and concurrent declines of wild salmonids. Here, we report a quantitative analysis of how a single salmon farm altered the natural transmission dynamics of sea lice to juvenile Pacific salmon. We studied infections of sea lice (Lepeophtheirus salmonis and Caligus clemensi) on juvenile pink salmon (Oncorhynchus gorbuscha) and chum salmon (Oncorhynchus keta) as they passed an isolated salmon farm during their seaward migration down two long and narrow corridors. Our calculations suggest the infection pressure imposed by the farm was four orders of magnitude greater than ambient levels, resulting in a maximum infection pressure near the farm that was 73 times greater than ambient levels and exceeded ambient levels for 30 km along the two wild salmon migration corridors. The farm-produced cohort of lice parasitizing the wild juvenile hosts reached reproductive maturity and produced a second generation of lice that re-infected the juvenile salmon. This raises the infection pressure from the farm by an additional order of magnitude, with a composite infection pressure that exceeds ambient levels for 75 km of the two migration routes. Amplified sea lice infestations due to salmon farms are a potential limiting factor to wild salmonid conservation.
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Affiliation(s)
- Martin Krkosek
- Department of Mathematical and Statistical Sciences, Center for Mathematical Biology, University of Alberta, Edmonton, Alberta, Canada T6G 2E7.
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Cleaver JE, Afzal V, Feeney L, McDowell M, Sadinski W, Volpe JP, Busch DB, Coleman DM, Ziffer DW, Yu Y, Nagasawa H, Little JB. Increased ultraviolet sensitivity and chromosomal instability related to P53 function in the xeroderma pigmentosum variant. Cancer Res 1999; 59:1102-8. [PMID: 10070969] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
Abstract
The xeroderma pigmentosum (XP) variant (XPV) is a form of XP that has normal excision repair but shows defective DNA replication after UV irradiation. In developing various transformed fibroblast cell lines from these patients, we have found that there are significant phenotypic changes in transformed cells that seem to correlate with inactivation of p53. After transformation with SV40, XPV cell lines are only slightly UV sensitive, like their primary counterparts, but their sensitization with caffeine and the induction of sister chromatid exchanges (SCEs) by UV irradiation are greatly enhanced. After transformation by HPV16 E7, which targets the retinoblastoma cell cycle regulatory gene, there is no change in the UV sensitivity of XPV cells; but, when transformed by HPV16 E6 or E6 and E7 combined, there is a large increase in UV sensitivity and in the induction of SCEs. These changes are not associated with any detectable changes in the reactivation of an externally irradiated luciferase expression vector, the excision of cyclobutane pyrimidine dimers from bulk DNA, or unscheduled DNA synthesis and, therefore, do not involve excision repair. We suggest that if SCEs represent homologous recombination between sister chromatids, then in the absence of p53 function, the DNA chain arrest typical of UV-damaged XPV cells initiates strand exchange during recovery. In untransformed cells with normal p53, the preferred mode of recovery would then be replication bypass. The symptoms of elevated solar carcinogenesis in XPV patients may, therefore, be associated with increased genomic instability in cells of the skin in which p53 is inactivated by UV-induced mutations.
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Affiliation(s)
- J E Cleaver
- Department of Dermatology, University of California at San Francisco, 94143-0750, USA.
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da Cruz AD, Volpe JP, Saddi V, Curry J, Curadoc MP, Glickman BW. Radiation risk estimation in human populations: lessons from the radiological accident in Brazil. Mutat Res 1997; 373:207-14. [PMID: 9042402 DOI: 10.1016/s0027-5107(96)00199-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
The development of radiological and nuclear technologies and the deployment of nuclear weapons have made ionizing radiation one of the most studied human mutagens. Exposure to ionizing radiation produces DNA damage which can result in mutation and cancer, making the risk associated with human exposure a critical issue. In this paper we estimate the risk associated with radiation exposure for individuals exposed to 137Cs during the 1987 Goiânia radiological accident. Using combined regression slopes from both the in vivo hprt mutant frequency and micronucleus frequency data we estimated a doubling dose of 173 (+/-47) cGy for these two endpoints. This is in close agreement with the published estimates for low dose rate and chronic exposure to low-LET radiation. We obtained risk estimates of about 24-fold increase in dominant disorders in the post-exposure generation of the directly exposed population. No detectable increase was found in the population at large. The risk of carcinogenesis in the directly exposed population was found to be increased by a factor in the range of 1.4 to 1.5. The small sample size in this study requires a large element of caution with respect to risk estimates interpretation. Moreover, the doubling dose estimates prepared here are derived from lymphocytes. This somatic data may require additional considerations for both cancer and certainly germ-line events. Nevertheless, the risk of carcinogenesis and genetic harm for this population are good indicators of the potential genetic damage imposed by ionizing radiation to the Goiânia population.
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Affiliation(s)
- A D da Cruz
- Biology Department, University of Victoria, BC, Canada
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Abstract
Thingvallavatn, Iceland contains two sympatric morphotypes (benthic and limnetic) of Arctic charr Salvelinus alpinus. Each morphotype is composed of two morphs and these differ markedly in ecology, behaviour and life history. We used molecular genetic approaches to test whether (i) genetic heterogeneity exists among morphs and (ii) if morphs arose in allopatry and came into secondary contact or arose sympatrically within the lake through genetic segregation and/or phenotypic plasticity. Direct sequencing of 275 bp of the mitochondrial DNA (mtDNA) control region, mtDNA restriction fragment length polymorphisms and single locus minisatellite analyses detected insufficient variation to test our hypotheses. Analysis of multilocus minisatellite band sharing detected no significant differences between morphs within the same morphotype. However, significant differences among morphs belonging to different morphotypes suggest some genetic heterogeneity in Thingvallavatn charr. Limnetic charr from Thingvallavatn were more similar to sympatric benthic charr than to allopatric limnetics from two other Icelandic lakes. This suggests that the Thingvallavatn morphs arose sympatrically within the lake rather than in allopatry followed by secondary contact.
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Affiliation(s)
- J P Volpe
- Department of Zoology, University of Guelph, Ontario, Canada
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17
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Abstract
We investigated the Ha-ras and Ki-ras gene status, tumorigenicity, pathology, line derivation, and intercellular communication of 7,12-dimethylbenz[a]anthracene-initiated papilloma-, carcinoma-, and hyperplastic skin-producing cell lines to further characterize them. Six of nine tumor cell lines grown in vitro expressed both mutant and normal Ha-ras proteins, and three lines expressed only normal Ha-ras. However, when grown subcutaneously in nude mice, seven of the nine lines expressed both mutant and normal Ha-ras, one line expressed normal Ha-ras, and one line did not grow subcutaneously. One papilloma line, P2/15, appeared to have an inducible mutant Ha-ras gene, as it was expressed only in vivo. These findings suggest that mutant Ha-ras genes may be lost in only a minor population of tumor lines during growth in culture. Finally, we found that mutant Ha-ras gene expression was strongly correlated with tumorigenicity in nude mice and that intercellular communication was strongly correlated with the derivation of the lines.
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Affiliation(s)
- J P Volpe
- University of Texas M. D. Anderson Cancer Center, Science Park-Research Division, Smithville, USA
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Abstract
Photostimulable phosphor computed radiography (CR) is a developing and increasingly widespread technology. The purpose of this pictorial essay is to familiarize readers with the appearance and cause of image artifacts that can occur in a third-generation computed radiographic system. Artifacts are described that relate to imaging plates, image readers, image processing, and film processing.
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Affiliation(s)
- J P Volpe
- Department of Radiology, University of California, San Francisco, 94143-0628, USA
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19
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Abstract
Xeroderma pigmentosum (XP) is a human repair-deficient disorder that is caused by mutations in any of eight genes (A-G, V). The genes for complementation groups A-G have been cloned fully or in part, but the gene for the XP variant (XPV) has yet to be cloned. The lack of progress with XPV is in large part due to the rarity of stably transformed cell lines. We have attempted to immortalize fibroblasts from several XPV patients to obtain cell lines with which to characterize this disease and clone the appropriate gene. We have found, as have other investigators, that this XP group is very difficult to immortalize. We used a variety of approaches, including transfection with pSV ori- (a plasmid containing the simian virus (SV) 40 large T antigen) followed by spontaneous transformation, which provided stable immortal lines from Cockayne syndrome A and B, but not from XPV; transfection with pSV ori- and exposure to 3 Gy of X-rays; transfection with pSV ori-, exposure to 2 Gy of X-rays, and treatment with 1 mM ethyl methanesulfonate; transfection with human papilloma virus-16; and infection with SV40. Even though we used as many as 2 x 10(8) cells in some experiments, we were able to immortalize only one of our lines, XP30RO. Because the biochemical defect in XPV cell lines involves the capacity to replicate damaged DNA templates, perhaps the XPV gene product could be a replication factor that interacts with SV40 T antigen, and whose absence from XPV cell lines presents difficulties for the immortalization process to proceed.
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Affiliation(s)
- J P Volpe
- Laboratory of Radiobiology and Environmental Health, University of California, San Francisco 94143-0750, USA
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Afzal V, Feeney L, Thomas GH, Volpe JP, Cleaver JE. Sister chromatid exchanges in cells defective in mismatch, post-replication and excision repair. Mutagenesis 1995; 10:457-62. [PMID: 8544762 DOI: 10.1093/mutage/10.5.457] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
Abstract
Three processes associated with DNA damage and genomic instability have been defined experimentally as operating during or soon after DNA replication: mismatch repair, post-replication repair and sister chromatid exchange. All these processes appear to operate on damage and/or errors in newly replicated DNA. Both mismatch repair and post-replication repair involve resynthesis of up to 1 kb of newly synthesized DNA: mismatch repair operates on single-base or slippage errors; post-replication repair operates on persistent gaps in newly synthesized DNA caused by damage on parental strands. Using colon cancer cells with different mismatch repair capacity, together with normal cells and excision-repair-defective and post-replication-repair-defective xeroderma pigmentosum (XP) cells, we analysed possible interactions between these processes. No evidence for overlap of mismatch repair with excision or post-replication repair was found. However, post-replication-repair-defective XP variant cells that were SV40 transformed showed higher UV-induced sister chromatid exchange frequencies than did untransformed cells. This suggests that sister chromatid exchanges in the XP variant are closely involved with UV-induced replication errors that are enhanced by transformation.
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Affiliation(s)
- V Afzal
- Laboratory of Radiobiology and Environmental Health, University of California, San Francisco 94143-0750, USA
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Volpe JP, Webb WR. A patient with a resectable left-upper-lobe lung cancer has an 8 mm contralateral noncalcified lung nodule. AJR Am J Roentgenol 1995; 165:479-80. [PMID: 7618581 DOI: 10.2214/ajr.165.2.7618581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- J P Volpe
- University of California San Francisco, USA
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Abstract
PURPOSE To assess the usefulness of standard and thin-section computed tomography (CT) in the examination of patients with possible bronchopleural fistulas (BPFs). MATERIALS AND METHODS Twenty patients with known or suspected BPFs underwent CT. Twelve had pleural air and fluid collections; eight had air leaks. Fourteen patients also underwent thin-section CT. RESULTS The BPF or its probable cause was visualized in all patients with air and fluid collections and in two of the patients with air leaks. BPFs due to bronchiectasis, necrotizing pneumonia, or alveolar cell carcinoma were identified in 10 patients. In four others, bronchiectasis was seen but the actual communication was not. In seven patients with postoperative air leaks, standard or thin-section CT demonstrated the air-leak source in only one. Thin-section CT was superior to standard CT in six of eight patients in whom the BPF or its probable cause was visible. CONCLUSION Standard and thin-section CT are useful in the diagnosis and management of peripheral BPFs.
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Affiliation(s)
- J L Westcott
- Department of Radiology, Hospital of Saint Raphael, New Haven, CT 06511, USA
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Abstract
In a study of fetal cells from a series of 12 pregnancies in ten families at risk for the ultraviolet light-sensitive, DNA repair-deficient diseases xeroderma pigmentosum (XP) and Cockayne syndrome (CS), we detected one XP and two CS homozygote fetuses. The diagnoses were confirmed by analysis of fetal skin fibroblasts or second amniotic samples after termination of the pregnancies. The measurement of ultraviolet light sensitivity and DNA repair depended on properties common to the seven excision repair-deficient XP complementation groups (A-G) and the two CS complementation groups (A, B). No XP variant families were included in the study, because the variant requires different testing techniques. Reliable and rapid diagnosis proved possible in all but one of the 12 pregnancies, supporting the use of these methods until the spectrum of mutations in the various XP and CS genes of the U.S. population is fully characterized and a DNA sequence-based diagnostic procedure becomes available.
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Affiliation(s)
- J E Cleaver
- Laboratory of Radiobiology and Environmental Health, University of California, San Francisco 94143-0750
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Warren BS, Naylor MF, Winberg LD, Yoshimi N, Volpe JP, Gimenez-Conti I, Slaga TJ. Induction and inhibition of tumor progression. Proc Soc Exp Biol Med 1993; 202:9-15. [PMID: 8093814 DOI: 10.3181/00379727-202-43511b] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- B S Warren
- Science Park/Research Division, University of Texas M.D. Anderson Cancer Center, Smithville 78957
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Abstract
Cancer is believed to be the result of a multistep process, beginning with a single alteration in a cell's genome. Here the hypothesis that a few cells may receive two or more hits after the application of a non-tumorigenic or higher dose of carcinogen is proposed. Preneoplastic lesions that arise from such doubly-hit cells may be few in number, but may more easily undergo tumor formation and tumor progression. This hypothesis augments the multihit model of carcinogenesis and explains much data that the single, first-hit assumption cannot.
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Affiliation(s)
- J P Volpe
- University of Texas, MD Anderson Cancer Center, Smithville 78957
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Volpe JP. The use of quantitative genetics for estimating the non-inherited and inherited contributions to metastasis formation. Clin Exp Metastasis 1992; 10:157-65. [PMID: 1582085 DOI: 10.1007/bf00132747] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
The contribution of both non-inherited (stochastic, random, environmental, and other non-inherited influences) and inherited factors (genetic and inherited epigenetic factors) to the variability of spontaneous lung metastasis formation in over 100 metastatic lines from each of three murine tumors was measured. The contribution of inherited and genetic sources of variability to metastasis formation was significantly greater than 0 in all cases, but only in the lines of sarcoma SANH was it the major influence on metastatic variability. In the sarcoma SA4020 and hepatocarcinoma HCA-1 lines, non-inherited factors accounted for the majority of the variation in spontaneous lung metastasis formation. A similar situation was also observed in the variability of the tumors with respect to the diameter doubling time. In conclusion, both non-inherited and genetic/inherited factors significantly influenced the formation of spontaneous metastases in the tumors examined. The significance of this finding for the cloning of metastatic genes is discussed.
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Affiliation(s)
- J P Volpe
- Department of Experimental Radiotherapy, University of Texas M.D. Anderson Cancer Center, Houston 77030
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Volpe JP, Milas L. Influence of tumor transplantation methods on tumor growth rate and metastatic potential of solitary tumors derived from metastases. Clin Exp Metastasis 1990; 8:381-9. [PMID: 2350921 DOI: 10.1007/bf01810682] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
This study was performed to determine whether the growth rate and metastatic potential of tumors generated by spontaneous lung metastases is influenced by transplantation methods. Three different tumors syngeneic to C3Hf/Kam mice were studied: the SA-NH and SA-4020 sarcomas and the hepatocarcinoma HCA-I. Solitary tumors in the legs of mice were generated by a single metastatic nodule taken at random from lung metastases, by a single metastatic nodule taken from each mouse with the highest number of metastases, by a mixture of cells from lung metastases taken randomly, or by a mixture of cells from primary leg tumors. These transplantation procedures were repeated for two to four isotransplant generations. Repeated isotransplants of primary tumors showed little if any change in the growth rate and metastatic spread. In contrast, primary tumors derived from spontaneous metastases frequently exhibited a decrease in their growth rate and an increase in metastatic potential. This was particularly frequent when tumors were established from single metastatic nodules taken randomly from the lung, or taken from lungs that contained the largest number of metastatic nodules. The magnitude of this change varied greatly among the three tumors studied. Increased metastatic formation in the lung was also frequently associated with slower growth of the primary tumors. Thus, transplantation methods used for establishing primary tumors have an important influence on the metastatic potential of tumor transplants.
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Affiliation(s)
- J P Volpe
- Department of Experimental Radiotherapy, University of Texas, M.D. Anderson Cancer Center, Houston 77030
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Abstract
The cell volume and DNA content were determined in 12 murine tumors and correlated with the ability of these tumors to metastasize spontaneously or to form lung nodules when injected i.v. The cell volume significantly correlated with spontaneous metastatic potential of investigated tumors (r = 0.683; 0.02 less than P less than 0.05) but not with the ability of tumor cells to form artificial metastasis. The DNA index significantly correlated with both spontaneous metastasis (r = 0.594; 0.02 less than P less than 0.05), and lung colonization (r = 0.631; 0.02 less than P less than 0.05). The DNA index barely correlated with the cell volume (r = 0.564; P = 0.10).
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Affiliation(s)
- J P Volpe
- Department of Experimental Radiotherapy, University of Texas M.D. Anderson Hospital and Tumor Institute, Houston 77030
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Abstract
It is theorized that tumors may be initiated by two methods: by an error affecting one or several oncogenes, or by an error affecting one or several of the genes controlling the stability of the genome. The majority of cells that misexpress an oncogene(s) and that later form a tumor probably form nonevolving benign tumors. A minority of these cells with an activated oncogene(s) (or one of the descendant cells) may also come to misexpress a stability gene(s). A normal cell that misexpresses only a stability gene(s) may form an evolving and genetically unstable cell line that may later misexpress an oncogene(s). A cell or cell line that misexpresses both an oncogene(s) and a stability gene(s) may form a genetically unstable tumor that creates diverse variants, allowing for extensive tumor cell evolution and the acquisition of malignant and metastatic properties.
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Affiliation(s)
- J P Volpe
- Department of Experimental Radiotherapy, University of Texas M. D. Anderson Hospital and Tumor Institute, Houston 77030
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Abstract
Fifteen metastatic lines derived in vivo from three syngeneic murine tumors, the sarcomas SA-NH and SA-4020 and the hepatic carcinoma HCA-I, were assessed for their stability of metastasis formation upon isotransplantation for several successive generations in syngeneic animals. Change in the metastatic phenotype was actively encouraged by a new procedure, the artificial selection for increased or decreased metastasis formation. Metastatic instability was dependent on tumor type, with five of six lines of tumor SA-NH, one of four lines of tumor SA-4020, and possibly one of five lines of HCA-I changing in lung metastasis formation. The instability of lung metastasis formation was also assessed by analyzing changes in the variance of the lines. Concomitant with a change in metastatic potential for lung metastasis, we observed a similar change for abdominal lymph node metastasis. We also report the selection of a less metastatic line. The variance of lung metastasis increased significantly only in the SA-NH lines. The instability of metastasis formation was attributed to genetic instability of metastatic cell lines.
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Affiliation(s)
- J P Volpe
- Department of Experimental Radiotherapy, University of Texas, M. D. Anderson Hospital and Tumor Institute, Houston 77030
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Milas L, Hunter N, Basic I, Volpe JP, Tofilon PJ. Effect of the radiosensitizer misonidazole and the radioprotector diethyldithiocarbamate on spontaneous metastasis formation of murine tumors. Int J Radiat Oncol Biol Phys 1986; 12:1071-4. [PMID: 3017903 DOI: 10.1016/0360-3016(86)90228-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
The effect of treatment with the hypoxic cell radiosensitizer misonidazole (MISO) and the radioprotector diethyldithiocarbamate (DDC) on the formation of spontaneous lung metastases of four different spontaneously metastasizing murine tumors was investigated. The tumors were mammary carcinoma MCA-K, hepatocarcinoma HCA-1, and sarcomas SA-4020 and SA-NH. Multiple daily treatments with MISO significantly enhanced the incidence of metastases only in MCA-K. Because only MCA-K, but not the three remaining tumors, is immunogenic, the treatment with MISO may be associated with the promotion of metastasis primarily in the immunogenic tumors. Treatment of mice with DDC had no influence on metastatic spread. However, when given prior to 1,3-bis(2-chloroethyl)-1-nitrosourea (BCNU), DDC reduced BCNU-induced enhancement of HCA-1 metastases.
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Volpe JP, Hunter N, Basic I, Milas L. Metastatic properties of murine sarcomas and carcinomas. I. Positive correlation with lung colonization and lack of correlation with s.c. tumor take. Clin Exp Metastasis 1985; 3:281-94. [PMID: 4075613 DOI: 10.1007/bf01585082] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
The spontaneous metastatic properties of six sarcomas and seven carcinomas syngeneic to C3Hf/Kam mice were investigated and the correlation between spontaneous metastasis, the lung colony forming efficiency (LCFE) of i.v. injected tumor cells, and s.c. tumor take was determined. The incidence and number of spontaneous metastases in the lung were determined in mice that had primary tumors in the leg removed 17 to 120 days earlier, depending on tumor type. There was a significant positive correlation between spontaneous metastasis and LCFE when all 13 tumors were compared, but the significance was lost when carcinomas and sarcomas were considered separately. No significant correlation between spontaneous metastasis and the s.c. tumor take was observed. Also, no correlation was found between LCFE and the s.c. tumor take of carcinomas, but there was a strong inverse relationship between these two properties of sarcomas. The number of cells shed from primary tumors was estimated and found to be more extensive in tumors with higher metastatic properties. Thus, in general, highly metastatic tumors were characterized by a high LCFE and a significant cell shedding. Furthermore, LCFE was greatly increased by treatment of animals with cyclophosphamide and by admixing heavily irradiated tumor cells to viable cells, implying that local environmental factors are important in determining the establishment of tumor cell clonogens into metastasis.
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