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Kollmann P, Hill ME, Allen RC, McNutt RL, Brown LE, Barnes NP, Delamere P, Clark G, Andrews GB, Salazar N, Westlake J, Romeo G, Vandegriff J, Kusterer M, Smith D, Nelson K, Jaskulek S, Decker RB, Cheng AF, Krimigis SM, Lisse CM, Mitchell DG, Weaver HA, Elliott HA, Fattig E, Gladstone GR, Valek PW, Weidner S, Kammer J, Bagenal F, Horanyi M, Kaufmann D, Harch A, Olkin CB, Piquette MR, Spencer JR, Young LA, Ennico K, Summers ME, Stern SA. Pluto's Interaction With Energetic Heliospheric Ions. J Geophys Res Space Phys 2019; 124:7413-7424. [PMID: 35860291 PMCID: PMC9285724 DOI: 10.1029/2019ja026830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/12/2019] [Revised: 07/08/2019] [Accepted: 07/10/2019] [Indexed: 06/15/2023]
Abstract
Pluto energies of a few kiloelectron volts and suprathermal ions with tens of kiloelectron volts and above. We measure this population using the Pluto Energetic Particle Spectrometer Science Investigation (PEPSSI) instrument on board the New Horizons spacecraft that flew by Pluto in 2015. Even though the measured ions have gyroradii larger than the size of Pluto and the cross section of its magnetosphere, we find that the boundary of the magnetosphere is depleting the energetic ion intensities by about an order of magnitude close to Pluto. The intensity is increasing exponentially with distance to Pluto and reaches nominal levels of the interplanetary medium at about 190R P distance. Inside the wake of Pluto, we observe oscillations of the ion intensities with a periodicity of about 0.2 hr. We show that these can be quantitatively explained by the electric field of an ultralow-frequency wave and discuss possible physical drivers for such a field. We find no evidence for the presence of plutogenic ions in the considered energy range.
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Hirsch B, Endris V, Lassmann S, Weichert W, Pfarr N, Schirmacher P, Kovaleva V, Werner M, Bonzheim I, Fend F, Sperveslage J, Kaulich K, Zacher A, Reifenberger G, Köhrer K, Stepanow S, Lerke S, Mayr T, Aust DE, Baretton G, Weidner S, Jung A, Kirchner T, Hansmann ML, Burbat L, von der Wall E, Dietel M, Hummel M. Multicenter validation of cancer gene panel-based next-generation sequencing for translational research and molecular diagnostics. Virchows Arch 2018; 472:557-565. [PMID: 29374318 PMCID: PMC5924673 DOI: 10.1007/s00428-017-2288-7] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2017] [Revised: 12/05/2017] [Accepted: 12/19/2017] [Indexed: 12/12/2022]
Abstract
The simultaneous detection of multiple somatic mutations in the context of molecular diagnostics of cancer is frequently performed by means of amplicon-based targeted next-generation sequencing (NGS). However, only few studies are available comparing multicenter testing of different NGS platforms and gene panels. Therefore, seven partner sites of the German Cancer Consortium (DKTK) performed a multicenter interlaboratory trial for targeted NGS using the same formalin-fixed, paraffin-embedded (FFPE) specimen of molecularly pre-characterized tumors (n = 15; each n = 5 cases of Breast, Lung, and Colon carcinoma) and a colorectal cancer cell line DNA dilution series. Detailed information regarding pre-characterized mutations was not disclosed to the partners. Commercially available and custom-designed cancer gene panels were used for library preparation and subsequent sequencing on several devices of two NGS different platforms. For every case, centrally extracted DNA and FFPE tissue sections for local processing were delivered to each partner site to be sequenced with the commercial gene panel and local bioinformatics. For cancer-specific panel-based sequencing, only centrally extracted DNA was analyzed at seven sequencing sites. Subsequently, local data were compiled and bioinformatics was performed centrally. We were able to demonstrate that all pre-characterized mutations were re-identified correctly, irrespective of NGS platform or gene panel used. However, locally processed FFPE tissue sections disclosed that the DNA extraction method can affect the detection of mutations with a trend in favor of magnetic bead-based DNA extraction methods. In conclusion, targeted NGS is a very robust method for simultaneous detection of various mutations in FFPE tissue specimens if certain pre-analytical conditions are carefully considered.
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Affiliation(s)
- B Hirsch
- Campus Mitte, Institute of Pathology, Charité-University Medicine Berlin, Virchowweg 15, 10117, Berlin, Germany. .,German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.
| | - V Endris
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Institute of Pathology, University Medicine Heidelberg, Im Neuenheimer Feld 224, 69120, Heidelberg, Germany
| | - S Lassmann
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Institute for Surgical Pathology, Medical Center, Faculty of Medicine, University of Freiburg, Breisacherstraße 115A, 79106, Freiburg, Germany
| | - W Weichert
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Institute of Pathology, Technical University Munich (TUM), Munich, Germany
| | - N Pfarr
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Institute of Pathology, Technical University Munich (TUM), Munich, Germany
| | - P Schirmacher
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Institute of Pathology, University Medicine Heidelberg, Im Neuenheimer Feld 224, 69120, Heidelberg, Germany
| | - V Kovaleva
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Institute for Surgical Pathology, Medical Center, Faculty of Medicine, University of Freiburg, Breisacherstraße 115A, 79106, Freiburg, Germany
| | - M Werner
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Institute for Surgical Pathology, Medical Center, Faculty of Medicine, University of Freiburg, Breisacherstraße 115A, 79106, Freiburg, Germany
| | - I Bonzheim
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Institute of Pathology and Neuropathology, University Hospital Tuebingen, Eberhard-Karls-University, Liebermeisterstraße 8, 72076, Tuebingen, Germany
| | - F Fend
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Institute of Pathology and Neuropathology, University Hospital Tuebingen, Eberhard-Karls-University, Liebermeisterstraße 8, 72076, Tuebingen, Germany
| | - J Sperveslage
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Institute of Pathology and Neuropathology, University Hospital Tuebingen, Eberhard-Karls-University, Liebermeisterstraße 8, 72076, Tuebingen, Germany
| | - K Kaulich
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Department of Neuropathology, Heinrich Heine University Duesseldorf and Biological and Medical Research Center (BMFZ), Genomics and Transcriptomics Laboratory, Heinrich Heine University Duesseldorf, 40225, Duesseldorf, Germany
| | - A Zacher
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Department of Neuropathology, Heinrich Heine University Duesseldorf and Biological and Medical Research Center (BMFZ), Genomics and Transcriptomics Laboratory, Heinrich Heine University Duesseldorf, 40225, Duesseldorf, Germany
| | - G Reifenberger
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Department of Neuropathology, Heinrich Heine University Duesseldorf and Biological and Medical Research Center (BMFZ), Genomics and Transcriptomics Laboratory, Heinrich Heine University Duesseldorf, 40225, Duesseldorf, Germany
| | - K Köhrer
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Department of Neuropathology, Heinrich Heine University Duesseldorf and Biological and Medical Research Center (BMFZ), Genomics and Transcriptomics Laboratory, Heinrich Heine University Duesseldorf, 40225, Duesseldorf, Germany
| | - S Stepanow
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Department of Neuropathology, Heinrich Heine University Duesseldorf and Biological and Medical Research Center (BMFZ), Genomics and Transcriptomics Laboratory, Heinrich Heine University Duesseldorf, 40225, Duesseldorf, Germany
| | - S Lerke
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Institute of Pathology, University Hospital Carl Gustav Carus, Fetscherstraße 74, 01307, Dresden, Germany
| | - T Mayr
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Institute of Pathology, University Hospital Carl Gustav Carus, Fetscherstraße 74, 01307, Dresden, Germany
| | - D E Aust
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Institute of Pathology, University Hospital Carl Gustav Carus, Fetscherstraße 74, 01307, Dresden, Germany
| | - G Baretton
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Institute of Pathology, University Hospital Carl Gustav Carus, Fetscherstraße 74, 01307, Dresden, Germany
| | - S Weidner
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Institute of Pathology, Ludwig-Maximilians University Munich, Thalkirchner Straße 36, 80337, Munich, Germany
| | - A Jung
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Institute of Pathology, Ludwig-Maximilians University Munich, Thalkirchner Straße 36, 80337, Munich, Germany
| | - T Kirchner
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Institute of Pathology, Ludwig-Maximilians University Munich, Thalkirchner Straße 36, 80337, Munich, Germany
| | - M L Hansmann
- German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.,Dr. Senckenberg Institute of Pathology, University Hospital, Goethe-University, Theodor-Stern-Kai 7, 60590, Frankfurt am Main, Germany
| | - L Burbat
- Campus Mitte, Institute of Pathology, Charité-University Medicine Berlin, Virchowweg 15, 10117, Berlin, Germany.,German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany
| | - E von der Wall
- Campus Mitte, Institute of Pathology, Charité-University Medicine Berlin, Virchowweg 15, 10117, Berlin, Germany.,German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany
| | - M Dietel
- Campus Mitte, Institute of Pathology, Charité-University Medicine Berlin, Virchowweg 15, 10117, Berlin, Germany.,German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany
| | - M Hummel
- Campus Mitte, Institute of Pathology, Charité-University Medicine Berlin, Virchowweg 15, 10117, Berlin, Germany.,German Cancer Consortium (DKTK) Partner Site, and German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany
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3
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Draghi WO, Del Papa MF, Hellweg C, Watt SA, Watt TF, Barsch A, Lozano MJ, Lagares A, Salas ME, López JL, Albicoro FJ, Nilsson JF, Torres Tejerizo GA, Luna MF, Pistorio M, Boiardi JL, Pühler A, Weidner S, Niehaus K, Lagares A. A consolidated analysis of the physiologic and molecular responses induced under acid stress in the legume-symbiont model-soil bacterium Sinorhizobium meliloti. Sci Rep 2016; 6:29278. [PMID: 27404346 PMCID: PMC4941405 DOI: 10.1038/srep29278] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2016] [Accepted: 06/14/2016] [Indexed: 01/30/2023] Open
Abstract
Abiotic stresses in general and extracellular acidity in particular disturb and limit nitrogen-fixing symbioses between rhizobia and their host legumes. Except for valuable molecular-biological studies on different rhizobia, no consolidated models have been formulated to describe the central physiologic changes that occur in acid-stressed bacteria. We present here an integrated analysis entailing the main cultural, metabolic, and molecular responses of the model bacterium Sinorhizobium meliloti growing under controlled acid stress in a chemostat. A stepwise extracellular acidification of the culture medium had indicated that S. meliloti stopped growing at ca. pH 6.0–6.1. Under such stress the rhizobia increased the O2 consumption per cell by more than 5-fold. This phenotype, together with an increase in the transcripts for several membrane cytochromes, entails a higher aerobic-respiration rate in the acid-stressed rhizobia. Multivariate analysis of global metabolome data served to unequivocally correlate specific-metabolite profiles with the extracellular pH, showing that at low pH the pentose-phosphate pathway exhibited increases in several transcripts, enzymes, and metabolites. Further analyses should be focused on the time course of the observed changes, its associated intracellular signaling, and on the comparison with the changes that operate during the sub lethal acid-adaptive response (ATR) in rhizobia.
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Affiliation(s)
- W O Draghi
- IBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina
| | - M F Del Papa
- IBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina
| | - C Hellweg
- CeBiTec - Centrum für Biotechnologie, Universität Bielefeld, Bielefeld, Germany
| | - S A Watt
- CeBiTec - Centrum für Biotechnologie, Universität Bielefeld, Bielefeld, Germany
| | - T F Watt
- CeBiTec - Centrum für Biotechnologie, Universität Bielefeld, Bielefeld, Germany
| | - A Barsch
- CeBiTec - Centrum für Biotechnologie, Universität Bielefeld, Bielefeld, Germany
| | - M J Lozano
- IBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina
| | - A Lagares
- Laboratorio de Bioquímica, Microbiología e Interacciones Biológicas en el Suelo, Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes, Roque Sáenz Peña 352, Bernal B1876BXD, Buenos Aires, Argentina
| | - M E Salas
- IBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina
| | - J L López
- IBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina
| | - F J Albicoro
- IBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina
| | - J F Nilsson
- IBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina
| | - G A Torres Tejerizo
- IBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina
| | - M F Luna
- CINDEFI - Centro de Investigación y Desarrollo en Fermentaciones Industriales, CONICET - Departamento de Química, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina
| | - M Pistorio
- IBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina
| | - J L Boiardi
- CINDEFI - Centro de Investigación y Desarrollo en Fermentaciones Industriales, CONICET - Departamento de Química, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina
| | - A Pühler
- CeBiTec - Centrum für Biotechnologie, Universität Bielefeld, Bielefeld, Germany
| | - S Weidner
- CeBiTec - Centrum für Biotechnologie, Universität Bielefeld, Bielefeld, Germany
| | - K Niehaus
- CeBiTec - Centrum für Biotechnologie, Universität Bielefeld, Bielefeld, Germany
| | - A Lagares
- IBBM - Instituto de Biotecnología y Biología Molecular, CONICET - Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, calles 47 y 115, 1900-La Plata, Argentina
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4
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Bagenal F, Horányi M, McComas DJ, McNutt RL, Elliott HA, Hill ME, Brown LE, Delamere PA, Kollmann P, Krimigis SM, Kusterer M, Lisse CM, Mitchell DG, Piquette M, Poppe AR, Strobel DF, Szalay JR, Valek P, Vandegriff J, Weidner S, Zirnstein EJ, Stern SA, Ennico K, Olkin CB, Weaver HA, Young LA. Pluto's interaction with its space environment: Solar wind, energetic particles, and dust. Science 2016; 351:aad9045. [PMID: 26989259 DOI: 10.1126/science.aad9045] [Citation(s) in RCA: 52] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
The New Horizons spacecraft carried three instruments that measured the space environment near Pluto as it flew by on 14 July 2015. The Solar Wind Around Pluto (SWAP) instrument revealed an interaction region confined sunward of Pluto to within about 6 Pluto radii. The region's surprisingly small size is consistent with a reduced atmospheric escape rate, as well as a particularly high solar wind flux. Observations from the Pluto Energetic Particle Spectrometer Science Investigation (PEPSSI) instrument suggest that ions are accelerated and/or deflected around Pluto. In the wake of the interaction region, PEPSSI observed suprathermal particle fluxes equal to about 1/10 of the flux in the interplanetary medium and increasing with distance downstream. The Venetia Burney Student Dust Counter, which measures grains with radii larger than 1.4 micrometers, detected one candidate impact in ±5 days around New Horizons' closest approach, indicating an upper limit of <4.6 kilometers(-3) for the dust density in the Pluto system.
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Affiliation(s)
- F Bagenal
- Laboratory of Atmospheric and Space Physics, University of Colorado, Boulder, CO 80600, USA.
| | - M Horányi
- Laboratory of Atmospheric and Space Physics, University of Colorado, Boulder, CO 80600, USA
| | - D J McComas
- Southwest Research Institute, San Antonio, TX 78228, USA. University of Texas at San Antonio, San Antonio, TX 78249, USA
| | - R L McNutt
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - H A Elliott
- Southwest Research Institute, San Antonio, TX 78228, USA
| | - M E Hill
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - L E Brown
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | | | - P Kollmann
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - S M Krimigis
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA. Academy of Athens, 28 Panapistimiou, 10679 Athens, Greece
| | - M Kusterer
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - C M Lisse
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - D G Mitchell
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - M Piquette
- Laboratory of Atmospheric and Space Physics, University of Colorado, Boulder, CO 80600, USA
| | - A R Poppe
- Space Sciences Laboratory, University of California, Berkeley, CA 94720, USA
| | - D F Strobel
- Johns Hopkins University, Baltimore, MD 21218, USA
| | - J R Szalay
- Laboratory of Atmospheric and Space Physics, University of Colorado, Boulder, CO 80600, USA. Southwest Research Institute, Boulder, CO 80302, USA
| | - P Valek
- Southwest Research Institute, San Antonio, TX 78228, USA
| | - J Vandegriff
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - S Weidner
- Southwest Research Institute, San Antonio, TX 78228, USA
| | - E J Zirnstein
- Southwest Research Institute, San Antonio, TX 78228, USA
| | - S A Stern
- Southwest Research Institute, Boulder, CO 80302, USA
| | - K Ennico
- NASA Ames Research Center, Moffett Field, CA 94035, USA
| | - C B Olkin
- Southwest Research Institute, Boulder, CO 80302, USA
| | - H A Weaver
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - L A Young
- Southwest Research Institute, Boulder, CO 80302, USA
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5
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Gladstone GR, Stern SA, Ennico K, Olkin CB, Weaver HA, Young LA, Summers ME, Strobel DF, Hinson DP, Kammer JA, Parker AH, Steffl AJ, Linscott IR, Parker JW, Cheng AF, Slater DC, Versteeg MH, Greathouse TK, Retherford KD, Throop H, Cunningham NJ, Woods WW, Singer KN, Tsang CCC, Schindhelm E, Lisse CM, Wong ML, Yung YL, Zhu X, Curdt W, Lavvas P, Young EF, Tyler GL, Bagenal F, Grundy WM, McKinnon WB, Moore JM, Spencer JR, Andert T, Andrews J, Banks M, Bauer B, Bauman J, Barnouin OS, Bedini P, Beisser K, Beyer RA, Bhaskaran S, Binzel RP, Birath E, Bird M, Bogan DJ, Bowman A, Bray VJ, Brozovic M, Bryan C, Buckley MR, Buie MW, Buratti BJ, Bushman SS, Calloway A, Carcich B, Conard S, Conrad CA, Cook JC, Cruikshank DP, Custodio OS, Ore CMD, Deboy C, Dischner ZJB, Dumont P, Earle AM, Elliott HA, Ercol J, Ernst CM, Finley T, Flanigan SH, Fountain G, Freeze MJ, Green JL, Guo Y, Hahn M, Hamilton DP, Hamilton SA, Hanley J, Harch A, Hart HM, Hersman CB, Hill A, Hill ME, Holdridge ME, Horanyi M, Howard AD, Howett CJA, Jackman C, Jacobson RA, Jennings DE, Kang HK, Kaufmann DE, Kollmann P, Krimigis SM, Kusnierkiewicz D, Lauer TR, Lee JE, Lindstrom KL, Lunsford AW, Mallder VA, Martin N, McComas DJ, McNutt RL, Mehoke D, Mehoke T, Melin ED, Mutchler M, Nelson D, Nimmo F, Nunez JI, Ocampo A, Owen WM, Paetzold M, Page B, Pelletier F, Peterson J, Pinkine N, Piquette M, Porter SB, Protopapa S, Redfern J, Reitsema HJ, Reuter DC, Roberts JH, Robbins SJ, Rogers G, Rose D, Runyon K, Ryschkewitsch MG, Schenk P, Sepan B, Showalter MR, Soluri M, Stanbridge D, Stryk T, Szalay JR, Tapley M, Taylor A, Taylor H, Umurhan OM, Verbiscer AJ, Versteeg MH, Vincent M, Webbert R, Weidner S, Weigle GE, White OL, Whittenburg K, Williams BG, Williams K, Williams S, Zangari AM, Zirnstein E. The atmosphere of Pluto as observed by New Horizons. Science 2016; 351:aad8866. [PMID: 26989258 DOI: 10.1126/science.aad8866] [Citation(s) in RCA: 179] [Impact Index Per Article: 22.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- G. Randall Gladstone
- Southwest Research Institute, San Antonio, TX 78238, USA
- University of Texas at San Antonio, San Antonio, TX 78249, USA
| | - S. Alan Stern
- Southwest Research Institute, Boulder, CO 80302, USA
| | - Kimberly Ennico
- National Aeronautics and Space Administration, Ames Research Center, Space Science Division, Moffett Field, CA 94035, USA
| | | | - Harold A. Weaver
- The Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | | | | | | | - David P. Hinson
- Search for Extraterrestrial Intelligence Institute, Mountain View, CA 94043, USA
| | | | | | | | | | | | - Andrew F. Cheng
- The Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | | | | | | | - Kurt D. Retherford
- Southwest Research Institute, San Antonio, TX 78238, USA
- University of Texas at San Antonio, San Antonio, TX 78249, USA
| | - Henry Throop
- The Johns Hopkins University, Baltimore, MD 21218, USA
| | | | | | | | | | | | - Carey M. Lisse
- The Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | | | - Yuk L. Yung
- California Institute of Technology, Pasadena, CA 91125, USA
| | - Xun Zhu
- The Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - Werner Curdt
- Max-Planck-Institut für Sonnensystemforschung, 37191 Katlenburg-Lindau, Germany
| | - Panayotis Lavvas
- Groupe de Spectroscopie Moléculaire et Atmosphérique, Université Reims Champagne-Ardenne, 51687 Reims, France
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Stern SA, Bagenal F, Ennico K, Gladstone GR, Grundy WM, McKinnon WB, Moore JM, Olkin CB, Spencer JR, Weaver HA, Young LA, Andert T, Andrews J, Banks M, Bauer B, Bauman J, Barnouin OS, Bedini P, Beisser K, Beyer RA, Bhaskaran S, Binzel RP, Birath E, Bird M, Bogan DJ, Bowman A, Bray VJ, Brozovic M, Bryan C, Buckley MR, Buie MW, Buratti BJ, Bushman SS, Calloway A, Carcich B, Cheng AF, Conard S, Conrad CA, Cook JC, Cruikshank DP, Custodio OS, Dalle Ore CM, Deboy C, Dischner ZJB, Dumont P, Earle AM, Elliott HA, Ercol J, Ernst CM, Finley T, Flanigan SH, Fountain G, Freeze MJ, Greathouse T, Green JL, Guo Y, Hahn M, Hamilton DP, Hamilton SA, Hanley J, Harch A, Hart HM, Hersman CB, Hill A, Hill ME, Hinson DP, Holdridge ME, Horanyi M, Howard AD, Howett CJA, Jackman C, Jacobson RA, Jennings DE, Kammer JA, Kang HK, Kaufmann DE, Kollmann P, Krimigis SM, Kusnierkiewicz D, Lauer TR, Lee JE, Lindstrom KL, Linscott IR, Lisse CM, Lunsford AW, Mallder VA, Martin N, McComas DJ, McNutt RL, Mehoke D, Mehoke T, Melin ED, Mutchler M, Nelson D, Nimmo F, Nunez JI, Ocampo A, Owen WM, Paetzold M, Page B, Parker AH, Parker JW, Pelletier F, Peterson J, Pinkine N, Piquette M, Porter SB, Protopapa S, Redfern J, Reitsema HJ, Reuter DC, Roberts JH, Robbins SJ, Rogers G, Rose D, Runyon K, Retherford KD, Ryschkewitsch MG, Schenk P, Schindhelm E, Sepan B, Showalter MR, Singer KN, Soluri M, Stanbridge D, Steffl AJ, Strobel DF, Stryk T, Summers ME, Szalay JR, Tapley M, Taylor A, Taylor H, Throop HB, Tsang CCC, Tyler GL, Umurhan OM, Verbiscer AJ, Versteeg MH, Vincent M, Webbert R, Weidner S, Weigle GE, White OL, Whittenburg K, Williams BG, Williams K, Williams S, Woods WW, Zangari AM, Zirnstein E. The Pluto system: Initial results from its exploration by New Horizons. Science 2015; 350:aad1815. [DOI: 10.1126/science.aad1815] [Citation(s) in RCA: 367] [Impact Index Per Article: 40.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Affiliation(s)
- S. A. Stern
- Southwest Research Institute, Boulder, CO 80302, USA
| | - F. Bagenal
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, CO 80303, USA
| | - K. Ennico
- National Aeronautics and Space Administration (NASA) Ames Research Center, Space Science Division, Moffett Field, CA 94035, USA
| | | | | | - W. B. McKinnon
- Department of Earth and Planetary Sciences, Washington University, St. Louis, MO 63130, USA
| | - J. M. Moore
- National Aeronautics and Space Administration (NASA) Ames Research Center, Space Science Division, Moffett Field, CA 94035, USA
| | - C. B. Olkin
- Southwest Research Institute, Boulder, CO 80302, USA
| | - J. R. Spencer
- Southwest Research Institute, Boulder, CO 80302, USA
| | - H. A. Weaver
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - L. A. Young
- Southwest Research Institute, Boulder, CO 80302, USA
| | - T. Andert
- Universität der Bundeswehr München, Neubiberg 85577, Germany
| | - J. Andrews
- Southwest Research Institute, Boulder, CO 80302, USA
| | - M. Banks
- Planetary Science Institute, Tucson, AZ 85719, USA
| | - B. Bauer
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - J. Bauman
- KinetX Aerospace, Tempe, AZ 85284, USA
| | - O. S. Barnouin
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - P. Bedini
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - K. Beisser
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - R. A. Beyer
- National Aeronautics and Space Administration (NASA) Ames Research Center, Space Science Division, Moffett Field, CA 94035, USA
| | - S. Bhaskaran
- NASA Jet Propulsion Laboratory, La Cañada Flintridge, CA 91011, USA
| | - R. P. Binzel
- Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - E. Birath
- Southwest Research Institute, Boulder, CO 80302, USA
| | - M. Bird
- University of Bonn, Bonn D-53113, Germany
| | - D. J. Bogan
- NASA Headquarters (retired), Washington, DC 20546, USA
| | - A. Bowman
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - V. J. Bray
- University of Arizona, Tucson, AZ 85721, USA
| | - M. Brozovic
- NASA Jet Propulsion Laboratory, La Cañada Flintridge, CA 91011, USA
| | - C. Bryan
- KinetX Aerospace, Tempe, AZ 85284, USA
| | - M. R. Buckley
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - M. W. Buie
- Southwest Research Institute, Boulder, CO 80302, USA
| | - B. J. Buratti
- NASA Jet Propulsion Laboratory, La Cañada Flintridge, CA 91011, USA
| | - S. S. Bushman
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - A. Calloway
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - B. Carcich
- Cornell University, Ithaca, NY 14853, USA
| | - A. F. Cheng
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - S. Conard
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - C. A. Conrad
- Southwest Research Institute, Boulder, CO 80302, USA
| | - J. C. Cook
- Southwest Research Institute, Boulder, CO 80302, USA
| | - D. P. Cruikshank
- National Aeronautics and Space Administration (NASA) Ames Research Center, Space Science Division, Moffett Field, CA 94035, USA
| | - O. S. Custodio
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - C. M. Dalle Ore
- National Aeronautics and Space Administration (NASA) Ames Research Center, Space Science Division, Moffett Field, CA 94035, USA
| | - C. Deboy
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | | | - P. Dumont
- KinetX Aerospace, Tempe, AZ 85284, USA
| | - A. M. Earle
- Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - H. A. Elliott
- Southwest Research Institute, San Antonio, TX 28510, USA
| | - J. Ercol
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - C. M. Ernst
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - T. Finley
- Southwest Research Institute, Boulder, CO 80302, USA
| | - S. H. Flanigan
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - G. Fountain
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - M. J. Freeze
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - T. Greathouse
- Southwest Research Institute, San Antonio, TX 28510, USA
| | - J. L. Green
- NASA Headquarters, Washington, DC 20546, USA
| | - Y. Guo
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - M. Hahn
- Rheinisches Institut für Umweltforschung an der Universität zu Köln, Cologne 50931, Germany
| | - D. P. Hamilton
- Department of Astronomy, University of Maryland, College Park, MD 20742, USA
| | - S. A. Hamilton
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - J. Hanley
- Southwest Research Institute, San Antonio, TX 28510, USA
| | - A. Harch
- Southwest Research Institute, Boulder, CO 80302, USA
| | - H. M. Hart
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - C. B. Hersman
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - A. Hill
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - M. E. Hill
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - D. P. Hinson
- Search for Extraterrestrial Intelligence Institute, Mountain View, CA 94043, USA
| | - M. E. Holdridge
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - M. Horanyi
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, CO 80303, USA
| | - A. D. Howard
- Department of Environmental Sciences, University of Virginia, Charlottesville, VA 22904, USA
| | | | | | - R. A. Jacobson
- NASA Jet Propulsion Laboratory, La Cañada Flintridge, CA 91011, USA
| | - D. E. Jennings
- NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA
| | - J. A. Kammer
- Southwest Research Institute, Boulder, CO 80302, USA
| | - H. K. Kang
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | | | - P. Kollmann
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - S. M. Krimigis
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - D. Kusnierkiewicz
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - T. R. Lauer
- National Optical Astronomy Observatory, Tucson, AZ 26732, USA
| | - J. E. Lee
- NASA Marshall Space Flight Center, Huntsville, AL 35812, USA
| | - K. L. Lindstrom
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | | | - C. M. Lisse
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - A. W. Lunsford
- NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA
| | - V. A. Mallder
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - N. Martin
- Southwest Research Institute, Boulder, CO 80302, USA
| | - D. J. McComas
- Southwest Research Institute, San Antonio, TX 28510, USA
| | - R. L. McNutt
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - D. Mehoke
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - T. Mehoke
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - E. D. Melin
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - M. Mutchler
- Space Telescope Science Institute, Baltimore, MD 21218, USA
| | - D. Nelson
- KinetX Aerospace, Tempe, AZ 85284, USA
| | - F. Nimmo
- University of California, Santa Cruz, CA 95064, USA
| | - J. I. Nunez
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - A. Ocampo
- NASA Headquarters, Washington, DC 20546, USA
| | - W. M. Owen
- NASA Jet Propulsion Laboratory, La Cañada Flintridge, CA 91011, USA
| | - M. Paetzold
- Rheinisches Institut für Umweltforschung an der Universität zu Köln, Cologne 50931, Germany
| | - B. Page
- KinetX Aerospace, Tempe, AZ 85284, USA
| | - A. H. Parker
- Southwest Research Institute, Boulder, CO 80302, USA
| | - J. W. Parker
- Southwest Research Institute, Boulder, CO 80302, USA
| | | | - J. Peterson
- Southwest Research Institute, Boulder, CO 80302, USA
| | - N. Pinkine
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - M. Piquette
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, CO 80303, USA
| | - S. B. Porter
- Southwest Research Institute, Boulder, CO 80302, USA
| | - S. Protopapa
- Department of Astronomy, University of Maryland, College Park, MD 20742, USA
| | - J. Redfern
- Southwest Research Institute, Boulder, CO 80302, USA
| | | | - D. C. Reuter
- NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA
| | - J. H. Roberts
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - S. J. Robbins
- Southwest Research Institute, Boulder, CO 80302, USA
| | - G. Rogers
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - D. Rose
- Southwest Research Institute, Boulder, CO 80302, USA
| | - K. Runyon
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | | | | | - P. Schenk
- Lunar and Planetary Institute, Houston, TX 77058, USA
| | - E. Schindhelm
- Southwest Research Institute, Boulder, CO 80302, USA
| | - B. Sepan
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - M. R. Showalter
- Search for Extraterrestrial Intelligence Institute, Mountain View, CA 94043, USA
| | - K. N. Singer
- Southwest Research Institute, Boulder, CO 80302, USA
| | - M. Soluri
- Michael Soluri Photography, New York, NY 10014, USA
| | | | - A. J. Steffl
- Southwest Research Institute, Boulder, CO 80302, USA
| | | | - T. Stryk
- Roane State Community College, Jamestown, TN 38556, USA
| | | | - J. R. Szalay
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, CO 80303, USA
| | - M. Tapley
- Southwest Research Institute, San Antonio, TX 28510, USA
| | - A. Taylor
- KinetX Aerospace, Tempe, AZ 85284, USA
| | - H. Taylor
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - H. B. Throop
- Planetary Science Institute, Tucson, AZ 85719, USA
| | | | - G. L. Tyler
- Stanford University, Stanford, CA 94305, USA
| | - O. M. Umurhan
- National Aeronautics and Space Administration (NASA) Ames Research Center, Space Science Division, Moffett Field, CA 94035, USA
| | - A. J. Verbiscer
- Department of Astronomy, University of Virginia, Charlottesville, VA 22904, USA
| | - M. H. Versteeg
- Southwest Research Institute, San Antonio, TX 28510, USA
| | - M. Vincent
- Southwest Research Institute, Boulder, CO 80302, USA
| | - R. Webbert
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - S. Weidner
- Southwest Research Institute, San Antonio, TX 28510, USA
| | - G. E. Weigle
- Southwest Research Institute, San Antonio, TX 28510, USA
| | - O. L. White
- National Aeronautics and Space Administration (NASA) Ames Research Center, Space Science Division, Moffett Field, CA 94035, USA
| | - K. Whittenburg
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | | | | | - S. Williams
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723, USA
| | - W. W. Woods
- Stanford University, Stanford, CA 94305, USA
| | - A. M. Zangari
- Southwest Research Institute, Boulder, CO 80302, USA
| | - E. Zirnstein
- Southwest Research Institute, San Antonio, TX 28510, USA
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Król A, Amarowicz R, Weidner S. The effects of cold stress on the phenolic compounds and antioxidant capacity of grapevine (Vitis vinifera L.) leaves. J Plant Physiol 2015; 189:97-104. [PMID: 26555272 DOI: 10.1016/j.jplph.2015.10.002] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2015] [Revised: 10/05/2015] [Accepted: 10/06/2015] [Indexed: 05/27/2023]
Abstract
According to some estimates, a 70% increase in crop yield could be achieved if the environmental conditions were close to the optimum ones for a given plant, which is why the identification and control of adverse environmental effects is a top priority in many countries worldwide. This paper contains a discussion of the changes in selected elements of the secondary metabolism in the leaves of two grapevine varieties (Vitis vinifera L.) with a different degree of tolerance to cold stress during prolonged and constant low temperature stress. The analyses have shown that the more-tolerant variety was characterized by a higher content of phenolic compounds, better radical-scavenging capacity and stronger reducing power. However, the cold stress caused a decrease in the concentration of the phenolics and decreased the scavenging capacity in the leaves of both varieties. Four phenolic acids have been identified in the extracts from the leaves of both grapevines: caffeic acid, p-coumaric acid, ferulic acid and a caffeic acid derivative. Caffeic acid appeared in the highest concentrations in all the leaf extracts. Additionally, it has been noted that in the leaves of the varieties susceptible and tolerant to cold stress, the prolonged exposure to low temperature caused a considerable reduction of the content of all identified phenolic acids. The results of the analyses have demonstrated large differences in the functioning of the secondary metabolism in response to the same stressor.
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Affiliation(s)
- A Król
- Department of Biology and Biotechnology, Chair of Biochemistry, University of Warmia and Mazury in Olsztyn, M. Oczapowskiego St. 1A, Kortowo, 10-957 Olsztyn, Poland.
| | - R Amarowicz
- Division of Food Science, Institute of Animal Reproduction and Food Research of the Polish Academy of Sciences, Tuwima Street 10, 10-748 Olsztyn, Poland
| | - S Weidner
- Department of Biology and Biotechnology, Chair of Biochemistry, University of Warmia and Mazury in Olsztyn, M. Oczapowskiego St. 1A, Kortowo, 10-957 Olsztyn, Poland
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Inazu T, Kawahara T, Endou H, Anzai N, Sebesta I, Stiburkova B, Ichida K, Hosoyamada M, Testa A, Testa A, Leonardis D, Catalano F, Pisano A, Mafrica A, Spoto B, Sanguedolce MC, Parlongo RM, Tripepi G, Postorino M, Enia G, Zoccali C, Mallamaci F, Working Group* M, Luque de Pablos A, Garcia-Nieto V, Lopez-Menchero JC, Ramos-Trujillo E, Gonzalez-Acosta H, Claverie-Martin F, Arsali M, Demosthenous P, Papazachariou L, Athanasiou Y, Voskarides K, Deltas C, Pierides A, Lee S, Jeong KH, Ihm C, Lee TW, Lee SH, Moon JY, Wi JG, Lee HJ, Kim EY, Rogacev K, Friedrich A, Hummel B, Berg J, Zawada A, Fliser D, Geisel J, Heine GH, Brabcova I, Brabcova I, Dusilova-Sulkova S, Dusilova-Sulkova S, Krejcik Z, Stranecky V, Lipar K, Marada T, Stepankova J, Viklicky O, Buraczynska M, Zukowski P, Zaluska W, Kuczmaszewska A, Ksiazek A, Gaggl M, Weidner S, Hofer M, Kleinert J, Fauler G, Wallner M, Kotanko P, Sunder-Plassmann G, Paschke E, Heguilen R, Heguilen R, Albarracin L, Politei J, Liste AA, Bernasconi A, Kusano E, Russo R, Pisani A, Messalli G, Imbriaco M, Prikhodina L, Ryzhkova O, Polyakov V, Lipkowska K, Ostalska-Nowicka D, Smiech M, Jaroniec M, Zaorska K, Szaflarski W, Nowicki M, Zachwieja J, Spoto B, Spoto B, Testa A, Sanguedolce MC, D'arrigo G, Parlongo RM, Pisano A, Tripepi G, Zoccali C, Mallamaci F, Moskowitz J, Piret S, Tashman A, Velez E, Lhotta K, Thakker R, Kotanko P, Cox J, Kingswood J, Mbundi J, Attard G, Patel U, Saggar A, Elmslie F, Doyle T, Jansen A, Jozwiak S, Belousova E, Frost M, Kuperman R, Bebin M, Korf B, Flamini R, Kohrman M, Sparagana S, Wu J, Ford J, Shah G, Franz D, Zonnenberg B, Cheung W, Urva S, Wang J, Frost M, Kingswood C, Budde K, Kofman T, Narjoz C, Raimbourg Q, Roland M, Loriot MA, Karras A, Hill GS, Jacquot C, Nochy D, Thervet E, Jagodzinski P, Mostowska M, Oko A, Nicolaou N, Kevelam S, Lilien M, Oosterveld M, Goldschmeding R, Van Eerde A, Pfundt R, Sonnenberg A, Ter Hal P, Knoers N, Renkema K, Storm T, Nielsen R, Christensen E, Frykholm C, Tranebjaerg L, Birn H, Verroust P, Neveus T, Sundelin B, Hertz JM, Holmstrom G, Ericson K, Fabris A, Cremasco D, Zambon A, Muraro E, Alessi M, D'angelo A, Anglani F, Del Prete D, Alkmim Teixeira A, Quinto BM, Jose Rodrigues C, Beltrame Ribeiro A, Batista M, Kerti A, Kerti A, Csohany R, Szabo A, Arkossy O, Sallai P, Moriniere V, Vega-Warner V, Lakatos O, Szabo T, Reusz G, Tory K, Addis M, Anglani F, Tosetto E, Meloni C, Ceol M, Cristofaro R, Melis MA, Vercelloni P, D'angelo A, Marra G, Kaniuka S, Nagel M, Wolyniec W, Obolonczyk L, Swiatkowska-Stodulska R, Sworczak K, Rutkowski B, Chen C, Jiang L, Chen L, Fang L, Mozes M. M, Boosi M, Rosivall L, Kokeny G, Diana R, Gross O, Johanna T, Rainer G, Ayse C, Henrik H, Gerhard-Anton M, Nabil M, Intissar E, Belge H, Belge H, Bloch J, Dahan K, Pirson Y, Vanhille P, Demoulin N. Genetic diseases. Nephrol Dial Transplant 2012. [DOI: 10.1093/ndt/gfs232] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Abstract
UNLABELLED This pilot study concerns cognitive rehabilitation of children with acquired brain injury (ABI). AIM The aim is threefold; to determine (1) whether the Amsterdam Memory and Attention Training for Children (AMAT-C) programme for children with ABI can be integrated in the child's school, (2) whether supervision in the school-setting maintains the child's motivation throughout the training programme and (3) whether positive changes in memory, attention and executive functions are found with this implementation of the training method. METHODS Seven children with memory and/or attention deficits after ABI were trained with AMAT-C. Measures used were programme evaluation questions, neuropsychological tests and a questionnaire concerning executive functions. RESULTS Overall, children, parents and trainers were satisfied with the programme and the children were motivated throughout the programme. The children showed significant improvements in neuropsychological subtests, primarily in tests of learning and memory. No overall change in executive functions was noted. CONCLUSION Provision of AMAT-C training and supervision at the child's school appears to ensure (1) satisfaction with the programme, (2) sustaining of motivation and (3) improvements in learning and memory.
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Affiliation(s)
- N Madsen Sjö
- Center for Rehabilitation of Brain Injury, University of Copenhagen, Copenhagen, Denmark.
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Weidner S, Schilling MB, Parks C. Costs and outcomes associated with hospitalizations for venous thromboembolic disease in patients with malignant neoplasm. J Clin Oncol 2009. [DOI: 10.1200/jco.2009.27.15_suppl.6590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
6590 Background: Venous thromboembolic disease (VTE), including deep vein thrombosis (DVT) and pulmonary embolism (PE) is a common occurrence in oncology, as patients with cancer have a greatly increased risk of VTE. Costs of VTE treatment are significant, including direct costs (expenditures for procedures, tests, medications, and services), indirect morbidity costs (lost income from work due to the condition or disability), and indirect mortality costs (lost income due to early mortality). Costs associated with VTE contribute to the overall cost of cancer care, however studies that examine the cost of care for oncology patients that develop VTEs are limited. Methods: A retrospective cohort study identified patients with cancer hospitalized during January 2006 through May 2008 using a large US healthcare database (>342 inpatient facilities across all US regions, ∼ 11 million patients and > 300 million charge- detail records). Patients with an ICD-9-CM code for malignant neoplasm (140.xx-208.xx) in combination with DVT or PE (415.11,415.19, 453.4,453.41,453.42) were included. Using Aspen's charge cost model, the hospital's clinical, utilization and billing, and cost accounting records healthcare cost, LOS, and mortality rates associated with these hospitalizations were calculated. Results: Data from 74 facilities with a mean bed size of 349 was utilized. A total of 77% of these facilities were not classified as teaching hospitals. Overall 1136 inpatients were identified with a diagnosis of malignant neoplasm and either DVT or PE. Table 1 shows the results. Conclusions: DVT/PE contributes to the cost of cancer treatment and is a considerable cost driver. Additionally, human costs are high. Aggressive practices to prevent these complications can result in a lower healthcare burden. In an era of restricted resources and value based purchasing, these data can be used to prioritize resource utilization. [Table: see text] [Table: see text]
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Affiliation(s)
- S. Weidner
- Eisai Inc, Woodcliff Lake, NJ; Aspen Healthcare Metrics, Centennial, CO
| | - M. B. Schilling
- Eisai Inc, Woodcliff Lake, NJ; Aspen Healthcare Metrics, Centennial, CO
| | - C. Parks
- Eisai Inc, Woodcliff Lake, NJ; Aspen Healthcare Metrics, Centennial, CO
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Fuechsel FG, Weidner S, Krause T. Focal pelvic uptake in 18F-FDG PET due to a contraceptive device; a potential pitfall easily unmasked by PET-CT. Nuklearmedizin 2006; 45:N42-3. [PMID: 16969953] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Affiliation(s)
- F G Fuechsel
- Department of Nuclear Medicine, Inselspital, University of Bern, 3010 Bern, Switzerland
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Just U, Weidner S, Kilz P, Hofe T. Polymer Reference Materials: Round-Robin Tests for the Determination of Molar Masses. International Journal of Polymer Analysis and Characterization 2005. [DOI: 10.1080/10236660500418039] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Weidner S, Kellner H. Rheuma und Sport. AKTUEL RHEUMATOL 2003. [DOI: 10.1055/s-2003-41641] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Capela D, Barloy-Hubler F, Gouzy J, Bothe G, Ampe F, Batut J, Boistard P, Becker A, Boutry M, Cadieu E, Dréano S, Gloux S, Godrie T, Goffeau A, Kahn D, Kiss E, Lelaure V, Masuy D, Pohl T, Portetelle D, Pühler A, Purnelle B, Ramsperger U, Renard C, Thébault P, Vandenbol M, Weidner S, Galibert F. Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021. Proc Natl Acad Sci U S A 2001; 98:9877-82. [PMID: 11481430 PMCID: PMC55546 DOI: 10.1073/pnas.161294398] [Citation(s) in RCA: 269] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Sinorhizobium meliloti is an alpha-proteobacterium that forms agronomically important N(2)-fixing root nodules in legumes. We report here the complete sequence of the largest constituent of its genome, a 62.7% GC-rich 3,654,135-bp circular chromosome. Annotation allowed assignment of a function to 59% of the 3,341 predicted protein-coding ORFs, the rest exhibiting partial, weak, or no similarity with any known sequence. Unexpectedly, the level of reiteration within this replicon is low, with only two genes duplicated with more than 90% nucleotide sequence identity, transposon elements accounting for 2.2% of the sequence, and a few hundred short repeated palindromic motifs (RIME1, RIME2, and C) widespread over the chromosome. Three regions with a significantly lower GC content are most likely of external origin. Detailed annotation revealed that this replicon contains all housekeeping genes except two essential genes that are located on pSymB. Amino acid/peptide transport and degradation and sugar metabolism appear as two major features of the S. meliloti chromosome. The presence in this replicon of a large number of nucleotide cyclases with a peculiar structure, as well as of genes homologous to virulence determinants of animal and plant pathogens, opens perspectives in the study of this bacterium both as a free-living soil microorganism and as a plant symbiont.
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Affiliation(s)
- D Capela
- Laboratoire de Biologie Moléculaire des Relations Plantes-Microorganismes, Unité Mixte de Recherche (UMR) 215 Centre National de la Recherche Scientifique (CNRS), Institut National de la Recherche Agronomique, Castanet Tolosan Cedex, France
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17
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Finan TM, Weidner S, Wong K, Buhrmester J, Chain P, Vorhölter FJ, Hernandez-Lucas I, Becker A, Cowie A, Gouzy J, Golding B, Pühler A. The complete sequence of the 1,683-kb pSymB megaplasmid from the N2-fixing endosymbiont Sinorhizobium meliloti. Proc Natl Acad Sci U S A 2001; 98:9889-94. [PMID: 11481431 PMCID: PMC55548 DOI: 10.1073/pnas.161294698] [Citation(s) in RCA: 249] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Analysis of the 1,683,333-nt sequence of the pSymB megaplasmid from the symbiotic N(2)-fixing bacterium Sinorhizobium meliloti revealed that the replicon has a high gene density with a total of 1,570 protein-coding regions, with few insertion elements and regions duplicated elsewhere in the genome. The only copies of an essential arg-tRNA gene and the minCDE genes are located on pSymB. Almost 20% of the pSymB sequence carries genes encoding solute uptake systems, most of which were of the ATP-binding cassette family. Many previously unsuspected genes involved in polysaccharide biosynthesis were identified and these, together with the two known distinct exopolysaccharide synthesis gene clusters, show that 14% of the pSymB sequence is dedicated to polysaccharide synthesis. Other recognizable gene clusters include many involved in catabolic activities such as protocatechuate utilization and phosphonate degradation. The functions of these genes are consistent with the notion that pSymB plays a major role in the saprophytic competence of the bacteria in the soil environment.
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Affiliation(s)
- T M Finan
- Department of Biology, McMaster University, Hamilton, ON, Canada.
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18
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Haider JM, Chavarot M, Weidner S, Sadler I, Williams RM, De Cola L, Pikramenou Z. Metallocyclodextrins as building blocks in noncovalent assemblies of photoactive units for the study of photoinduced intercomponent processes. Inorg Chem 2001; 40:3912-21. [PMID: 11466049 DOI: 10.1021/ic0100166] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Cyclodextrin cups have been employed to build supramolecular systems consisting of metal and organic photoactive/redox-active components; the photoinduced communication between redox-active units assembled in water via noncovalent interactions is established. The functionalization of a beta-cyclodextrin with a terpyridine unit, ttp-beta-CD, is achieved by protection of all but one of the hydroxyl groups by methylation and attachment of the ttp unit on the free primary hydroxyl group. The metalloreceptors [(beta-CD-ttp)Ru(ttp)][PF(6)](2), [(beta-CD-ttp)Ru(tpy)][PF(6)](2), and [Ru(beta-CD-ttp)(2)][PF(6)](2) are synthesized and fully characterized. The [(beta-CD-ttp)Ru(ttp)][PF(6)](2) metalloreceptor exhibits luminescence in water, centered at 640 nm, from the (3)MLCT state with a lifetime of 1.9 ns and a quantum yield of Phi = 4.1 x 10(-)(5). Addition of redox-active quinone guests AQS, AQC, and BQ to an aqueous solution of [(beta-CD-ttp)Ru(ttp)](2+) results in quenching of the luminescence up to 40%, 20%, and 25%, respectively. Measurement of the binding strength indicates that, in saturation conditions, 85% for AQS and 77% for AQC are bound. The luminescence quenching is attributed to an intercomponent electron transfer from the appended ruthenium center to the quinone guest inside the cavity. Control experiments demonstrate no bimolecular quenching at these conditions. A photoactive osmium metalloguest, [Os(biptpy)(tpy)][PF(6)], is designed with a biphenyl hydrophobic tail for insertion in the cyclodextrin cavity. The complex is luminescent at room temperature with an emission band maximum at 730 nm and a lifetime of 116 ns. The osmium(III) species are formed for the study of photoinduced electron transfer upon their assembly with the ruthenium cyclodextrin, [(beta-CD-ttp)Ru(ttp)](2+). Time-resolved spectroscopy studies show a short component of 10 ps, attributed to electron transfer from Ru(II) to Os(III) giving an electron transfer rate 9.5 x 10(9) s(-)(1).
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Affiliation(s)
- J M Haider
- School of Chemistry, The University of Birmingham, Edgbaston, Birmingham B15 2TT, U.K
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19
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Galibert F, Finan TM, Long SR, Puhler A, Abola P, Ampe F, Barloy-Hubler F, Barnett MJ, Becker A, Boistard P, Bothe G, Boutry M, Bowser L, Buhrmester J, Cadieu E, Capela D, Chain P, Cowie A, Davis RW, Dreano S, Federspiel NA, Fisher RF, Gloux S, Godrie T, Goffeau A, Golding B, Gouzy J, Gurjal M, Hernandez-Lucas I, Hong A, Huizar L, Hyman RW, Jones T, Kahn D, Kahn ML, Kalman S, Keating DH, Kiss E, Komp C, Lelaure V, Masuy D, Palm C, Peck MC, Pohl TM, Portetelle D, Purnelle B, Ramsperger U, Surzycki R, Thebault P, Vandenbol M, Vorholter FJ, Weidner S, Wells DH, Wong K, Yeh KC, Batut J. The composite genome of the legume symbiont Sinorhizobium meliloti. Science 2001; 293:668-72. [PMID: 11474104 DOI: 10.1126/science.1060966] [Citation(s) in RCA: 835] [Impact Index Per Article: 36.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
The scarcity of usable nitrogen frequently limits plant growth. A tight metabolic association with rhizobial bacteria allows legumes to obtain nitrogen compounds by bacterial reduction of dinitrogen (N2) to ammonium (NH4+). We present here the annotated DNA sequence of the alpha-proteobacterium Sinorhizobium meliloti, the symbiont of alfalfa. The tripartite 6.7-megabase (Mb) genome comprises a 3.65-Mb chromosome, and 1.35-Mb pSymA and 1.68-Mb pSymB megaplasmids. Genome sequence analysis indicates that all three elements contribute, in varying degrees, to symbiosis and reveals how this genome may have emerged during evolution. The genome sequence will be useful in understanding the dynamics of interkingdom associations and of life in soil environments.
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Affiliation(s)
- F Galibert
- UMR6061-CNRS, Laboratoire de Génétique et Développement, Faculté de Médecine, 2 avenue du Pr. Léon Bernard, F-35043 Rennes cedex, France
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20
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Abstract
OBJECTIVE Antineutrophil cytoplasmic antibodies (ANCA) are believed to play a pathogenetic role in necrotizing small-vessel vasculitis. While the involvement of neutrophils in this disease has been extensively studied in vitro, we undertook to analyze thoroughly the contribution of monocytes to tissue destruction in systemic vasculitis. METHODS Monocytes obtained from normal human individuals were stimulated by ANCA isolated from patients with active vasculitis. The formation of oxygen radicals was measured by a fluorometric assay using 2',7'-dichlorofluorescin diacetate. RESULTS ANCA induced monocytes to produce oxygen radicals, resulting in a mean 43% increase (range 21-84%) in oxygen radical formation compared with normal IgG. The formation of reactive oxygen species was time and concentration dependent and was also induced by ANCA F(ab')2 fragments. Normal nonspecific IgG or their corresponding F(ab')2 fragments induced no release or very little release of oxygen radicals. Preincubation of monocytes with the Fcy receptor type II-blocking monoclonal antibody IV.3 before addition of ANCA greatly reduced formation of oxygen radicals. Using ligand affinity chromatography with proteinase 3 (PR3) and myeloperoxidase (MPO), ANCA were further purified by depletion of patient IgG. The stimulation of monocytes with these pure PR3- and MPO-ANCA confirmed that cellular activation was specifically induced by ANCA. CONCLUSION These results show that ANCA induce the formation of reactive oxygen species in human monocytes. These findings support the notion that ANCA specifically activate monocytes by several mechanisms to participate in the inflammatory process of ANCA-associated vasculitis.
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Affiliation(s)
- S Weidner
- University of Erlangen-Nürnberg, Germany
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Hafezi-Rachti S, Riess R, Weidner S, Wonka A, Rupprecht HD. The patient with Wegener's granulomatosis and an intrasplenic mass of unknown origin. Nephrol Dial Transplant 2000; 15:906-8. [PMID: 10831652 DOI: 10.1093/ndt/15.6.906] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- S Hafezi-Rachti
- Department of Internal Medicine and Nephrology, Friedrich-Alexander-University, Erlangen-Nürnberg, Germany.
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Weidner S, Arnold W, Stackebrandt E, Pühler A. Phylogenetic Analysis of Bacterial Communities Associated with Leaves of the Seagrass Halophila stipulacea by a Culture-Independent Small-Subunit rRNA Gene Approach. Microb Ecol 2000; 39:22-31. [PMID: 10790514 DOI: 10.1007/s002489900194] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
The phylogenetic diversity of the bacterial community associated with leaves of the marine plant Halophila stipulacea in the northern Gulf of Elat was examined by 16S rRNA gene (rDNA) sequence analyses of a clone library. For 59 clones corresponding to 51 ARDRA (amplified rDNA restriction analysis) groups, the sequence of approximately 1 kb was determined, and the fraction of the corresponding ARDRA groups of the leaf library was calculated. The class Proteobacteria was represented by 62.6% of the clone sequences. Most sequences originated from members of the gamma-subclass (27.3%), affiliated with members of the genera Pseudomonas, Vibrio, Marinomonas, Oceanospirillum, and other marine groups. Affiliation to the alpha-subclass was determined for 24.2% of the sequences. They were related to the genera Hyphomonas, Roseobacter, Ruegeria, and Rhizobiaceae. Several alpha-proteobacterial sequences were distantly related to known sequences. Only 4% of the clone sequences were related to beta-Proteobacteria. Additionally, 7.1% of the sequences possibly belonged to the class Proteobacteria, but branched deeply from known subclasses. Several sequences were affiliated to members of the orders Verrucomicrobiales and Planctomycetales, the Holophaga/Acidobacterium phylum, and chloroplasts of marine diatoms. </hea
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Affiliation(s)
- S Weidner
- Universität Bielefeld, Fakultät für Biologie, Lehrstuhl für Genetik, Universitätsstr.25, D-33615 Bielefeld, Germany
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23
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Weidner S, Lukaszewicz D, Amarowicz R. Participation of the tightly-bound (putative cytoskeleton-bound) polysomes in translation during germination of dormant and non-dormant cereal caryopses. Z NATURFORSCH C 2000; 55:23-9. [PMID: 10739095 DOI: 10.1515/znc-2000-1-206] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Research was done on dormant and non-dormant barley cv. Ars caryopses and triticale cv. Grado caryopses treated and non-treated with abscisic acid (ABA). During germination higher participation of populations of so-called tightly-bound polysomes (TBP) in embryos of dormant barley caryopses was observed, as well as their high metabolic activity. In embryos of triticale caryopses of which dormancy was imposed in an artificial way by ABA (100 microM), the strongest incorporation of 14C-amino acids into nascent polypeptide chains in vivo was found in population of TBP, as well as the highest participation among three of the studied fractions (free polysomes, membrane-bound polysomes and tightly-bound polysomes). These results may indicate the significant role of TBP (putative cytoskeleton-bound polysomes--CBP) in maintaining dormancy during imbibition of cereal caryopses.
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Affiliation(s)
- S Weidner
- Department of Biochemistry, Faculty of Biology, Warmia and Masuria University in Olsztyn, Poland.
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24
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Weidner S, Kittelmann M, Goeke K, Ghisalba O, Zähner H. 3'-Demethoxy-3'-hydroxystaurosporine-O-methyltransferase from Streptomyces longisporoflavus catalyzing the last step in the biosynthesis of staurosporine. J Antibiot (Tokyo) 1998; 51:679-82. [PMID: 9727395 DOI: 10.7164/antibiotics.51.679] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Affiliation(s)
- S Weidner
- Core Technology Area, Expertise Bioreactions, Novartis Pharma Inc., Basle, Switzerland
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25
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Weidner S, Kuehn G, Werthmann B, Schroeder H, Just U, Borowski R, Decker R, Schwarz B, Schmuecking I, Seifert I. A new approach of characterizing the hydrolytic degradation of poly(ethylene terephthalate) by MALDI-MS. ACTA ACUST UNITED AC 1997. [DOI: 10.1002/(sici)1099-0518(199708)35:11<2183::aid-pola9>3.0.co;2-z] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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26
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Schlüter A, Patschkowski T, Quandt J, Selinger LB, Weidner S, Krämer M, Zhou L, Hynes MF, Priefer UB. Functional and regulatory analysis of the two copies of the fixNOQP operon of Rhizobium leguminosarum strain VF39. Mol Plant Microbe Interact 1997; 10:605-616. [PMID: 9204566 DOI: 10.1094/mpmi.1997.10.5.605] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
DNA corresponding to two copies of the Rhizobium leguminosarum bv. viciae strain VF39 fixNOQP operon coding for a putative symbiotic terminal oxidase of the heme-copper oxidase superfamily was cloned, sequenced, and genetically analyzed. The first copy is located upstream of the fixK-fixL region on plasmid pRleVF39c, whereas the second copy resides on the nodulation plasmid pRleVF39d. Insertional mutagenesis with antibiotic resistance cassettes confirmed that both copies were functional, and that the presence of at least one functional copy was required for nitrogen fixation. The deduced amino acid sequences of both fixN genes are highly similar (95% identity) and contain 15 putative transmembrane helices, suggesting that the fixN gene products are integral membrane proteins. Furthermore, six histidine residues predicted to be the ligands for a heme-copper binuclear center and a low-spin heme b are conserved in both R. leguminosarum fixN proteins. The deduced fixO and fixP gene products show characteristics of membrane-bound monoheme and diheme cytochrome c, respectively. Upstream of both fixN copies putative Fnr-consensus binding sites (anaeroboxes) were found that differ in certain base pairs. As R. leguminosarum VF39 possesses two members of the Fnr/FixK regulator family, FnrN and FixK, the possible differential regulation of both fixN copies was analyzed with fixN-gusA reporter gene fusions. Both fixN fusions were induced under free-living microaerobic conditions and in the symbiotic zone of the root nodule. Induction of the expression of fixNc and fixNd was highly reduced in a fnrN mutant background and in a fixL mutant background, whereas fixK was only marginally involved in fixN regulation. Residual expression of fixN was observed in an fnrN/fixK double mutant.
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Affiliation(s)
- A Schlüter
- Okologie des Bodens, Botanisches Institut, RWTH Aachen, Germany
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27
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Weidner S, Arnold W, Puhler A. Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes. Appl Environ Microbiol 1996; 62:766-71. [PMID: 8975607 PMCID: PMC167844 DOI: 10.1128/aem.62.3.766-771.1996] [Citation(s) in RCA: 132] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Abstract
The diversity of microorganisms associated with the leaves of the seagrass Halophila stipulacea in the northern Gulf of Elat was examined by culture-independent analysis. Microorganisms were harvested by a sonication treatment for total-community genomic DNA isolation. Oligonucleotides complementary to conserved regions in the 16S rRNA-encoding DNA (rDNA) of bacteria were used for PCR amplification. The 16S rDNA PCR products were subcloned and further characterized by a restriction fragment length analysis termed ARDRA (amplified rDNA restriction analysis). These analyses were carried out after reamplifying the cloned fragments with two primers binding symmetrically to the plasmid immediately on both sides of the cloned insert. Computer-aided clustering was performed after separate restriction analysis with enzymes HinfI and HpaII. By this method, 103 cloned 16S rDNA fragments were clustered into a total of 58 different groups. Sequence analysis of clones with an identical ARDRA pattern confirmed that members of an ARDRA group were closely related to each other. The sequenced clones were found to be affiliated with a marine snow-associated plastid-like rRNA clone and with a marine Hyphomonas strain, respectively. The method applied in this study could be useful for the routine study of other microbial communities of interest.
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Affiliation(s)
- S Weidner
- Fakultat fur Biologie, Lehrstuhl fur Genetik, Universitat Bielefeld, Germany
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Schlüter A, Rüberg S, Krämer M, Weidner S, Priefer UB. A homolog of the Rhizobium meliloti nitrogen fixation gene fixN is involved in the production of a microaerobically induced oxidase activity in the phytopathogenic bacterium Agrobacterium tumefaciens. Mol Gen Genet 1995; 247:206-15. [PMID: 7753030 DOI: 10.1007/bf00705651] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Hybridization analysis using the Rhizobium meliloti nitrogen fixation gene fixN as a probe revealed the presence of a homologous DNA region in the phytopathogenic bacterium Agrobacterium tumefaciens. Hybridization signals were also detected with total DNAs of Rhizobium leguminosarum bv. phaseoli, Rhodobacter capsulatus and Escherichia coli, but not those of Xanthomonas campestris pv. campestris and Pseudomonas putida. The hybridizing fragment from A. tumefaciens was cloned and sequenced. The predicted gene product of one of the two open reading frames identified on the sequenced fragment shows homology to FixN of different Rhizobiaceae as well as a low but significant similarity to subunit I of heme copper oxidases from various bacteria. The presence of five strictly conserved histidine residues previously implicated in forming ligands to heme and CuB in oxidases and the predicted membrane topology provide evidence that the A. tumefaciens fixN-like gene product is a component of the heme copper oxidase superfamily. The incomplete open reading frame starting only 8 nucleotides downstream of the fixN-like gene exhibits homology to Rhizobium fixO. Using an uidA (GUS) gene fusion it could be shown that the A. tumefaciens fixN-like gene is preferentially expressed under microaerobic conditions. Expression of the uidA fusion is abolished in R. meliloti fixJ and fixK mutants, indicating that an Fnr-like protein is involved in transcriptional regulation of the fixN-like gene in A. tumefaciens. The presence of an upstream DNA sequence motif identical to the Fnr-consensus binding site (anaerobox) further supports this hypothesis. A. tumefaciens mutated in the fixN-like gene shows decreased TMPD-specific oxidase activity under microaerobic conditions, indicating that the fixN-like gene or operon codes for proteins involved in respiration under reduced oxygen availability.
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Affiliation(s)
- A Schlüter
- Okologie des Bodens, Botanisches Institut, RWTH Aachen, Germany
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Weidner S, Kühn G, Just U. Characterization of oligomers in poly(ethylene terephthalate) by matrix-assisted laser desorption/ionization mass spectrometry. Rapid Commun Mass Spectrom 1995; 9:697-702. [PMID: 7647367 DOI: 10.1002/rcm.1290090813] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Matrix-assisted laser desorption/ionization mass spectrometry was used for the characterization of extracted and synthesized oligo(ethylene terephthalate)s. Generally, cyclic oligomers [GT]n could be found in technical yarns and tiles, whereas our synthesized model oligomers mainly consisted of linear chains H-[GT]n-G. In addition, some other distributions could be identified as H-[GH]n-OH and H-[GGT]1-[GT]n-7/-G linear oligomers and H-[GGT]1-[GT]n-1 cyclic oligomers, where G is an ethylene glycol unit, GG is a diethylene glycol unit, caused by impurities of ethylene glycol, and T is a terephthalic acid unit. NMR and IR investigations were carried out to verify these results.
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Affiliation(s)
- S Weidner
- Federal Institute of Materials Research and Testing (BAM), Berlin, Germany
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30
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Abstract
Whole lupins (Lupinus albus) were roasted with exit temperatures ranging from approximately 130 (moderate heat) to 175 degrees C (high heat). In situ N disappearance after 12 h of incubation in the rumen was 83% for raw lupins, 45% for lupins roasted at moderate temperatures, and 39% for lupins roasted at high temperatures. Lambs fed lupins roasted at moderate temperatures retained more N (P less than .01) than those fed soybean meal (SBM). However, growth rate and feed efficiency were similar among lambs fed diets containing SBM, raw lupins, or roasted lupins. Dehulled lupins commercially roasted at low, moderate, and high temperatures resulted in ruminal in situ N disappearances of 59, 47, and 43% for the respective temperatures. Dehulled lupins (Lupinus albus) were also roasted in a laboratory oven for 2, 4, and 6 h at 120, 140, and 160 degrees C. Simulation of roasting for 2 h had no effect (P greater than .10) on ruminal in situ N disappearance at any of the temperatures. In situ N disappearance was reduced (P less than .05) after roasting for 4 h at 160 degrees C, but acid detergent insoluble N was only moderately increased. Nitrogen retention in lambs fed raw, dehulled lupins was equal (P greater than .10) to that of lambs fed SBM. Whole lupins or dehulled lupins can replace SBM as the sole protein supplement for growing lambs. Although roasting lupins decreased ruminal in situ N disappearance, it had no effect on growth of lambs.
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Affiliation(s)
- L Kung
- University of Delaware, Newark 19717-1303
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31
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Huebner K, Linnenbach A, Weidner S, Glenn G, Croce CM. Deoxyribonuclease I sensitivity of plasmid genomes in teratocarcinoma-derived stem and differentiated cells. Proc Natl Acad Sci U S A 1981; 78:5071-5. [PMID: 6272288 PMCID: PMC320334 DOI: 10.1073/pnas.78.8.5071] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Abstract
The DNase I (EC 3.1.21.1) sensitivities of the simian virus 40 (SV40) genome, the pBR322 genome, and the herpes simplex virus type 1 thymidine kinase (HSV-1 tk) gene have been compared in teratocarcinoma-derived stem (12-1) and differentiated (12-1a) cell lines established by transfection of thymidine kinase (ATP:thymidine 5'-phosphotransferase, EC 2.7.1.21)-deficient F9 cells with DNA from a tripartite plasmid genome consisting of the pBR322 genome, the SV40 genome, and the HSV-1 tk gene. HSV-1 tk is present in both stem and differentiated cells; SV40 early proteins are present in differentiated cells but not in stem cells; the pBR322 genome is not expressed in either cell type. The SV40 and pBR322 genomes are more sensitive to DNase I digestion in stem cells than in differentiated cells, reflecting the DNase I-hypersensitivity of total stem-cell chromatin. The HSV-1 tk gene is the least sensitive to DNase I digestion in both cell types.
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Kozłowska H, Cwik J, Rutkowski A, Weidner S. Über Rapsschrote 22. Mitt. Veränderungen im Gehalt von Glucosinolatderivaten während der Silierung von Kartoffeln unter Zusatz von Rapsschrot. ACTA ACUST UNITED AC 1972. [DOI: 10.1002/food.19720160803] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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