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Li C, Zheng Y, Huang P. Molecular markers from the chloroplast genome of rose provide a complementary tool for variety discrimination and profiling. Sci Rep 2020; 10:12188. [PMID: 32699274 PMCID: PMC7376030 DOI: 10.1038/s41598-020-68092-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2019] [Accepted: 06/17/2020] [Indexed: 02/06/2023] Open
Abstract
The rose is one of the most important ornamental woody plants because of its extensive use and high economic value. Herein, we sequenced a complete chloroplast genome of the miniature rose variety Rosa 'Margo Koster' and performed comparative analyses with sequences previously published for other species in the Rosaceae family. The chloroplast genome of Rosa 'Margo Koster', with a size of 157,395 bp, has a circular quadripartite structure typical of angiosperm chloroplast genomes and contains a total of 81 protein-coding genes, 30 tRNA genes and 4 rRNA genes. Conjunction regions in the chloroplast genome of Rosa 'Margo Koster' were verified and manually corrected by Sanger sequencing. Comparative genome analysis showed that the IR contraction and expansion events resulted in rps19 and ycf1 pseudogenes. The phylogenetic analysis within the Rosa genus showed that Rosa 'Margo Koster' is closer to Rosa odorata than to other Rosa species. Additionally, we identified and screened highly divergent sequences and cpSSRs and compared their power to discriminate rose varieties by Sanger sequencing and capillary electrophoresis. The results showed that 15 cpSSRs are polymorphic, but their discriminating power is only moderate among a set of rose varieties. However, more than 150 single nucleotide variations (SNVs) were discovered in the flanking region of cpSSRs, and the results indicated that these SNVs have a higher divergence and stronger power for profiling rose varieties. These findings suggest that nucleotide mutations in the chloroplast genome may be an effective and powerful tool for rose variety discrimination and DNA profiling. These molecular markers in the chloroplast genome sequence of Rosa spp. will facilitate population and phylogenetic studies and other related studies of this species.
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Affiliation(s)
- Changhong Li
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Forest Silviculture and Tree Cultivation, State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, 100091, China
| | - Yongqi Zheng
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Forest Silviculture and Tree Cultivation, State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, 100091, China.
| | - Ping Huang
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Forest Silviculture and Tree Cultivation, State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, 100091, China.
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Han Y, Yu J, Zhao T, Cheng T, Wang J, Yang W, Pan H, Zhang Q. Dissecting the Genome-Wide Evolution and Function of R2R3-MYB Transcription Factor Family in Rosa chinensis. Genes (Basel) 2019; 10:E823. [PMID: 31635348 PMCID: PMC6826493 DOI: 10.3390/genes10100823] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2019] [Revised: 10/12/2019] [Accepted: 10/16/2019] [Indexed: 01/23/2023] Open
Abstract
Rosa chinensis, an important ancestor species of Rosa hybrida, the most popular ornamental plant species worldwide, produces flowers with diverse colors and fragrances. The R2R3-MYB transcription factor family controls a wide variety of plant-specific metabolic processes, especially phenylpropanoid metabolism. Despite their importance for the ornamental value of flowers, the evolution of R2R3-MYB genes in plants has not been comprehensively characterized. In this study, 121 predicted R2R3-MYB gene sequences were identified in the rose genome. Additionally, a phylogenomic synteny network (synnet) was applied for the R2R3-MYB gene families in 35 complete plant genomes. We also analyzed the R2R3-MYB genes regarding their genomic locations, Ka/Ks ratio, encoded conserved motifs, and spatiotemporal expression. Our results indicated that R2R3-MYBs have multiple synteny clusters. The RcMYB114a gene was included in the Rosaceae-specific Cluster 54, with independent evolutionary patterns. On the basis of these results and an analysis of RcMYB114a-overexpressing tobacco leaf samples, we predicted that RcMYB114a functions in the phenylpropanoid pathway. We clarified the relationship between R2R3-MYB gene evolution and function from a new perspective. Our study data may be relevant for elucidating the regulation of floral metabolism in roses at the transcript level.
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Affiliation(s)
- Yu Han
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing 100083, China.
| | - Jiayao Yu
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing 100083, China.
| | - Tao Zhao
- VIB-UGent Center for Plant Systems Biology, Technologiepark, Zwijnaarde 71, 9052 Ghent, Belgium.
| | - Tangren Cheng
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing 100083, China.
| | - Jia Wang
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing 100083, China.
| | - Weiru Yang
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing 100083, China.
| | - Huitang Pan
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing 100083, China.
| | - Qixiang Zhang
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing 100083, China.
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing 100083, China.
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Shameh S, Alirezalu A, Hosseini B, Maleki R. Fruit phytochemical composition and color parameters of 21 accessions of five Rosa species grown in North West Iran. J Sci Food Agric 2019; 99:5740-5751. [PMID: 31166009 DOI: 10.1002/jsfa.9842] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2019] [Revised: 05/28/2019] [Accepted: 05/30/2019] [Indexed: 05/25/2023]
Abstract
BACKGROUND The genus Rosa comprises economically important horticultural plants belonging to the family Rosaceae. Recently, the use of different Rosa species has increased owing to their multipurpose properties (ornamental, food and medicinal uses). In this study, 21 accessions of Rosa genotypes were compared for fruit phytochemical composition and color parameters. RESULTS The highest antioxidant activity (37.86 mg AAE g-1 FW) and total phenolic (8.17 mg GAE g-1 FW), total flavonoid (2.53 mg QUE g-1 FW), total carotenoid (20.21 mg g-1 FW) and ascorbic acid (84.27 mg g-1 FW) contents were observed in G20 (R. canina), G8 (R. canina), G9 (R. canina), G5 (R. damascena) and G10 (R. moschata) respectively. Chlorogenic acid and gallic acid were found as the main phenolic constituents of Rosa fruits. High amounts of apigenin, rutin, quercetin, p-coumaric acid, cinnamic acid, chlorogenic acid, caffeic acid and gallic acid were obtained in fruit extracts of G6, G14, G6, G8, G19, G9, G19 and G12 respectively. Moreover, the level of color parameters also varied among genotypes. The highest values of a*, b*, L* and chroma were obtained in G4 (R. canina). Based on hierarchical clustering analysis with heat-map, five groups of accessions were identified. CONCLUSION Different Rosa genotypes are rich in certain phytochemical compounds, with significant variations in their levels being observed. Hence evaluation of Rosa genetic resources can supply valuable data for screening accessions containing high levels of individual phenolics, antioxidants and other bioactive compounds for use in breeding programs and food and pharma industries. © 2019 Society of Chemical Industry.
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Affiliation(s)
- Shahla Shameh
- Department of Horticultural Sciences, Faculty of Agriculture, Urmia University, Urmia, Iran
| | - Abolfazl Alirezalu
- Department of Horticultural Sciences, Faculty of Agriculture, Urmia University, Urmia, Iran
| | - Bahman Hosseini
- Department of Horticultural Sciences, Faculty of Agriculture, Urmia University, Urmia, Iran
| | - Ramin Maleki
- Research Department of Chromatography, Iranian Academic Center for Education, Culture and Research (ACECR), Urmia, Iran
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Fougère-Danezan M, Joly S, Bruneau A, Gao XF, Zhang LB. Phylogeny and biogeography of wild roses with specific attention to polyploids. Ann Bot 2015; 115:275-91. [PMID: 25550144 PMCID: PMC4551085 DOI: 10.1093/aob/mcu245] [Citation(s) in RCA: 62] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2014] [Revised: 09/15/2014] [Accepted: 10/27/2014] [Indexed: 05/18/2023]
Abstract
BACKGROUND AND AIMS The genus Rosa (150-200 species) is widely distributed throughout temperate and sub-tropical habitats from the northern hemisphere to tropical Asia, with only one tropical African species. In order to better understand the evolution of roses, this study examines infrageneric relationships with respect to conventional taxonomy, considers the extent of allopolyploidization and infers macroevolutionary processes that have led to the current distribution of the genus. METHODS Phylogenetic relationships among 101 species of the genus Rosa were reconstructed using sequences from the plastid psbA-trnH spacer, trnL intron, trnL-F spacer, trnS-G spacer and trnG intron, as well as from nuclear glyceraldehyde 3-phosphate dehydrogenase (GAPDH), which was used to identify putative allopolyploids and infer their possible origins. Chloroplast phylogeny was used to estimate divergence times and reconstruct ancestral areas. KEY RESULTS Most subgenera and sections defined by traditional taxonomy are not monophyletic. However, several clades are partly consistent with currently recognized sections. Allopolyploidy seems to have played an important role in stabilizing intersectional hybrids. Biogeographic analyses suggest that Asia played a central role as a genetic reservoir in the evolution of the genus Rosa. CONCLUSIONS The ancestral area reconstruction suggests that despite an early presence on the American continent, most extant American species are the results of a later re-colonization from Asia, probably through the Bering Land Bridge. The results suggest more recent exchanges between Asia and western North America than with eastern North America. The current distribution of roses from the Synstylae lineage in Europe is probably the result of a migration from Asia approx. 30 million years ago, after the closure of the Turgai strait. Directions for a new sectional classification of the genus Rosa are proposed, and the analyses provide an evolutionary framework for future studies on this notoriously difficult genus.
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Affiliation(s)
- Marie Fougère-Danezan
- Chengdu Institute of Biology, Chinese Academy of Sciences, PO Box 416, Chengdu, Sichuan 610041, China, Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Mengla, Yunnan 666303, China, Institut de Recherche en Biologie Végétale (Département de Sciences biologiques), Université de Montréal, 4101 Sherbrooke Est, Montréal, Québec H1X 2B2, Canada, Montreal Botanical Garden, 4101 Sherbrooke Est, Montréal, Québec H1X 2B2, Canada and Missouri Botanical Garden, PO Box 299, St. Louis, MO 63166-0299, USA Chengdu Institute of Biology, Chinese Academy of Sciences, PO Box 416, Chengdu, Sichuan 610041, China, Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Mengla, Yunnan 666303, China, Institut de Recherche en Biologie Végétale (Département de Sciences biologiques), Université de Montréal, 4101 Sherbrooke Est, Montréal, Québec H1X 2B2, Canada, Montreal Botanical Garden, 4101 Sherbrooke Est, Montréal, Québec H1X 2B2, Canada and Missouri Botanical Garden, PO Box 299, St. Louis, MO 63166-0299, USA
| | - Simon Joly
- Chengdu Institute of Biology, Chinese Academy of Sciences, PO Box 416, Chengdu, Sichuan 610041, China, Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Mengla, Yunnan 666303, China, Institut de Recherche en Biologie Végétale (Département de Sciences biologiques), Université de Montréal, 4101 Sherbrooke Est, Montréal, Québec H1X 2B2, Canada, Montreal Botanical Garden, 4101 Sherbrooke Est, Montréal, Québec H1X 2B2, Canada and Missouri Botanical Garden, PO Box 299, St. Louis, MO 63166-0299, USA Chengdu Institute of Biology, Chinese Academy of Sciences, PO Box 416, Chengdu, Sichuan 610041, China, Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Mengla, Yunnan 666303, China, Institut de Recherche en Biologie Végétale (Département de Sciences biologiques), Université de Montréal, 4101 Sherbrooke Est, Montréal, Québec H1X 2B2, Canada, Montreal Botanical Garden, 4101 Sherbrooke Est, Montréal, Québec H1X 2B2, Canada and Missouri Botanical Garden, PO Box 299, St. Louis, MO 63166-0299, USA
| | - Anne Bruneau
- Chengdu Institute of Biology, Chinese Academy of Sciences, PO Box 416, Chengdu, Sichuan 610041, China, Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Mengla, Yunnan 666303, China, Institut de Recherche en Biologie Végétale (Département de Sciences biologiques), Université de Montréal, 4101 Sherbrooke Est, Montréal, Québec H1X 2B2, Canada, Montreal Botanical Garden, 4101 Sherbrooke Est, Montréal, Québec H1X 2B2, Canada and Missouri Botanical Garden, PO Box 299, St. Louis, MO 63166-0299, USA
| | - Xin-Fen Gao
- Chengdu Institute of Biology, Chinese Academy of Sciences, PO Box 416, Chengdu, Sichuan 610041, China, Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Mengla, Yunnan 666303, China, Institut de Recherche en Biologie Végétale (Département de Sciences biologiques), Université de Montréal, 4101 Sherbrooke Est, Montréal, Québec H1X 2B2, Canada, Montreal Botanical Garden, 4101 Sherbrooke Est, Montréal, Québec H1X 2B2, Canada and Missouri Botanical Garden, PO Box 299, St. Louis, MO 63166-0299, USA
| | - Li-Bing Zhang
- Chengdu Institute of Biology, Chinese Academy of Sciences, PO Box 416, Chengdu, Sichuan 610041, China, Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Mengla, Yunnan 666303, China, Institut de Recherche en Biologie Végétale (Département de Sciences biologiques), Université de Montréal, 4101 Sherbrooke Est, Montréal, Québec H1X 2B2, Canada, Montreal Botanical Garden, 4101 Sherbrooke Est, Montréal, Québec H1X 2B2, Canada and Missouri Botanical Garden, PO Box 299, St. Louis, MO 63166-0299, USA Chengdu Institute of Biology, Chinese Academy of Sciences, PO Box 416, Chengdu, Sichuan 610041, China, Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Mengla, Yunnan 666303, China, Institut de Recherche en Biologie Végétale (Département de Sciences biologiques), Université de Montréal, 4101 Sherbrooke Est, Montréal, Québec H1X 2B2, Canada, Montreal Botanical Garden, 4101 Sherbrooke Est, Montréal, Québec H1X 2B2, Canada and Missouri Botanical Garden, PO Box 299, St. Louis, MO 63166-0299, USA
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Andersson SC, Olsson ME, Gustavsson KE, Johansson E, Rumpunen K. Tocopherols in rose hips (Rosa spp.) during ripening. J Sci Food Agric 2012; 92:2116-2121. [PMID: 22311859 DOI: 10.1002/jsfa.5594] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2011] [Revised: 10/23/2011] [Accepted: 12/20/2011] [Indexed: 05/31/2023]
Abstract
BACKGROUND Rose hips are used as a food ingredient and in health products. They are rich in various bioactive compounds such as carotenoids and vitamin C, but data on their vitamin E content (tocopherols and tocotrienols) are limited. In this study, four different species of Rosa were analysed for tocopherol and tocotrienol content during ripening in three different years. RESULTS Only α- and γ-tocopherol were found in the fleshy parts of the rose hips, and the tocopherol content and vitamin E activity varied depending on date of harvesting, species and year. The amount of vitamin E activity differed between species of Rosa and years, whereas the changes during ripening were relatively small. CONCLUSION The choice of species must be considered if tocopherol content is to be optimised when rose hips are used as a food ingredient.
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Affiliation(s)
- Staffan C Andersson
- Department of Horticulture, Swedish University of Agricultural Sciences, PO Box 103, SE-230 53 Alnarp, Sweden.
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Jürgens AH, Seitz B, Kowarik I. Genetic differentiation of three endangered wild roses in northeastern Germany: Rosa inodora Fries, Rosa sherardii Davies and Rosa subcollina (H. Christ) Keller. Plant Biol (Stuttg) 2011; 13:524-33. [PMID: 21489104 DOI: 10.1111/j.1438-8677.2010.00406.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
Because of increased interest in the use of local provenances for restoration or landscaping projects, information about the genetic differentiation of plant species is required to delineate provenances for seed collection. To obtain information about population distinctiveness of endangered Rosa species occurring in Brandenburg (northeast Germany), we investigated the genetic differentiation of Rosa inodora, R. sherardii and R. subcollina using RAPD markers. All three species were uncommon in our study region. Φ-statistics, estimated by amova, revealed a low interpopulation differentiation for R. inodora (Φ(PT) = 0.19, P < 0.0001) and higher values for R. sherardii and R. subcollina (Φ(PT) = 0.29 and 0.30, P < 0.0001). UPGMA dendrograms and NMDS showed clear spatial differentiation for all species and a correlation between geographic and genetic distances. Due to predominantly high values of genetic differentiation and spatial patterns of ordination, we suggest small provenance regions for endangered Rosa species for seed collection.
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Affiliation(s)
- A H Jürgens
- Department of Ecology, Technische Universität Berlin, Berlin, Germany
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De Cock K, Vander Mijnsbrugge K, Breyne P, Van Bockstaele E, Van Slycken J. Morphological and AFLP-based differentiation within the taxonomical complex section Caninae (subgenus Rosa). Ann Bot 2008; 102:685-97. [PMID: 18723861 PMCID: PMC2712374 DOI: 10.1093/aob/mcn151] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
BACKGROUND AND AIMS The taxonomical structure of the polymorphic subgenus Rosa section Caninae is highly complex due to the combination of some unusual features: the unique polyploid chromosomal constitution, the heterogamic canina meiosis, the ability to hybridize interspecifically, and the predominantly matroclinal inheritance. Although most taxonomists agree on the subdivision of the section into three morphologically well-defined groups (Rubigineae, Vestitae, and Caninae), they disagree on the existence of smaller groups such as Tomentellae. The aim was to gain insight in the taxonomical structure and investigate the interpopulation differentiation of the polymorphic section Caninae by analysing morphological and AFLP-based characters of the seven most common Belgian dog-rose taxa. METHODS The intersubsectional and -specific relationships within the dog-roses were examined using morphological and molecular-genetic markers. AFLP data were analysed with basic descriptive genetic statistics because of the lack of Hardy-Weinberg equilibrium due to the polyploid genetic structure and heterogamic meiosis. KEY RESULTS Both the morphological and AFLP-based analyses supported the subdivision of the dog-roses in three well-defined though partly overlapping groups, Rubigineae, Vestitae and Caninae. However, it was not possible to distinguish between the morphologically well-defined taxa within the same subsection using AFLP-based data. In addition, the results suggested a high similarity of Rosa balsamica with subsection Caninae taxa. Small-scale geographical AFLP-based differentiation was observed within several dog-rose taxa. Surprisingly, individuals sampled at one locality and belonging to morphologically distinct dog-rose taxa displayed higher genetic similarities in comparison to their congeners sampled at different localities. CONCLUSIONS The hybridogenic character of the dog-roses was reflected in the vague boundaries between the subsections and on the species level within the subsections. Indications were found for current or historical hybridization on the genetic structure of the population. No morphological or AFLP-based evidence was obtained to support the existence of the separate subsection Tomentellae.
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Affiliation(s)
- Katrien De Cock
- Research Institute for Nature and Forest (INBO), Scientific Institute of the Flemish Government, Kliniekstraat 25, B-1070 Brussels, Belgium
| | - Kristine Vander Mijnsbrugge
- Research Institute for Nature and Forest (INBO), Scientific Institute of the Flemish Government, Kliniekstraat 25, B-1070 Brussels, Belgium
| | - Peter Breyne
- Research Institute for Nature and Forest (INBO), Scientific Institute of the Flemish Government, Kliniekstraat 25, B-1070 Brussels, Belgium
- For correspondence. E-mail
| | - Erik Van Bockstaele
- Institute for Agricultural and Fisheries Research (ILVO), Scientific Institute of the Flemish Government, Burg. Van Gansbergelaan 96 bus 1,B-9820 Merelbeke, Belgium
| | - Jos Van Slycken
- Research Institute for Nature and Forest (INBO), Scientific Institute of the Flemish Government, Kliniekstraat 25, B-1070 Brussels, Belgium
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Babaei A, Tabaei-Aghdaei SR, Khosh-Khui M, Omidbaigi R, Naghavi MR, Esselink GD, Smulders MJM. Microsatellite analysis of Damask rose (Rosa damascena Mill.) accessions from various regions in Iran reveals multiple genotypes. BMC Plant Biol 2007; 7:12. [PMID: 17346330 PMCID: PMC1832195 DOI: 10.1186/1471-2229-7-12] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/24/2006] [Accepted: 03/08/2007] [Indexed: 05/14/2023]
Abstract
BACKGROUND Damask roses (Rosa damascena Mill.) are mainly used for essential oil production. Previous studies have indicated that all production material in Bulgaria and Turkey consists of only one genotype. Nine polymorphic microsatellite markers were used to analyze the genetic diversity of 40 accessions of R. damascena collected across major and minor rose oil production areas in Iran. RESULTS All microsatellite markers showed a high level of polymorphism (5-15 alleles per microsatellite marker, with an average of 9.11 alleles per locus). Cluster analysis of genetic similarities revealed that these microsatellites identified a total of nine different genotypes. The genotype from Isfahan province, which is the major production area, was by far the most common genotype (27/40 accessions). It was identical to the Bulgarian genotype. Other genotypes (each represented by 1-4 accessions) were collected from minor production areas in several provinces, notably in the mountainous Northwest of Iran. CONCLUSION This is the first study that uncovered genetic diversity within Damask rose. Our results will guide new collection activities to establish larger collections and manage the Iranian Damask rose genetic resources. The genotypes identified here may be directly useful for breeding.
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Affiliation(s)
- Alireza Babaei
- Department of Horticultural Science, Faculty of Agriculture, Tarbiat Modares University, P.O. Box 14115-365, Tehran, Iran
| | - Seyed Reza Tabaei-Aghdaei
- Biotechnology Research Department of Natural Resources, Research Institute of Forests and Rangelands, P.O. Box 13185-116, Tehran, Iran
| | - Morteza Khosh-Khui
- Department of Horticultural Science, Faculty of Agriculture, Shiraz University, Shiraz, Iran
| | - Reza Omidbaigi
- Department of Horticultural Science, Faculty of Agriculture, Tarbiat Modares University, P.O. Box 14115-365, Tehran, Iran
| | - Mohammad Reza Naghavi
- Department of Plant Breeding, Faculty of Agriculture, University of Tehran, Tehran, Iran
| | - Gerhard D Esselink
- Plant Research International, Wageningen UR, P.O. Box 16, 6700 AA Wageningen, The Netherlands
| | - Marinus JM Smulders
- Plant Research International, Wageningen UR, P.O. Box 16, 6700 AA Wageningen, The Netherlands
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Abstract
An allopolyploid complex with high genomic integrity has been studied. Dogroses transmit only seven chromosomes (from seven bivalents) through the pollen, whereas 21, 28 or 35 chromosomes (from seven bivalents and 14, 21 or 28 univalents) come from the egg cells. Seedlings derived from two interspecific crosses were analysed with flow cytometry and molecular markers to determine ploidy level, mode of reproduction and genomic constitution. Evidence was obtained for the formation of unreduced male and female gametes, which can take part in fertilization (producing seedlings with higher ploidy than the parental plants) or in apomictic reproduction. Random amplified polymorphic DNA (RAPD) and microsatellite analyses indicated that three seedlings (5%) were derived through apomixis, whereas the other 49 were hybrids. Bivalent formation appears to involve chromosomes that consistently share the same microsatellite alleles. Allele-sharing between the maternally transmitted and highly conserved univalent-forming chromosomes reflected the taxonomic distance between different genotypes. The frequently recombining bivalent-forming chromosomes were taxonomically less informative.
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Affiliation(s)
- H Nybom
- Balsgård-Department of Crop Science, Swedish University of Agricultural Sciences, Fjälkestadsvägen, Kristianstad, Sweden.
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CAISSARD JEANCLAUDE, BERGOUGNOUX VÉRONIQUE, MARTIN MAGALI, MAURIAT MÉLANIE, BAUDINO SYLVIE. Chemical and histochemical analysis of 'Quatre Saisons Blanc Mousseux', a Moss Rose of the Rosa x damascena group. Ann Bot 2006; 97:231-8. [PMID: 16344264 PMCID: PMC2803356 DOI: 10.1093/aob/mcj034] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
BACKGROUND AND AIMS Moss roses are old garden roses covered with a mossy growth on flower pedicel and calyx. This moss releases a pine-scented oleoresin that is very sticky and odoriferous. Rosa x centifolia 'muscosa' was the first moss rose to be obtained by bud-mutation but, interestingly, R. x damascena 'Quatre Saisons Blanc Mousseux' was the first repeat-blooming cultivar, thus interesting breeders. In the present study, the anatomy of these sports (i.e. bud-mutations) is characterized and the volatile organic compounds (VOCs) produced by the moss versus the petals are identified. They are compared between the two lines and their respective parents. METHODS Anatomy of the moss is studied by environmental scanning electron microscopy and histochemical light microscopy. Sudan Red IV and Fluorol Yellow 088 are used to detect lipids, and 1-naphthol reaction with N,N-dimethyl-p-phenylenediamine to detect terpenes (Nadi reaction). Head-space or solid/liquid extraction followed by gas chromatography and mass spectrometry are used to identify VOCs in moss, trichomes and petals. KEY RESULTS Moss of the two cultivars has the same structure with trichomes on other trichomes but not exactly the same VOCs. These VOCs are specific to the moss, with lots of terpenes. An identical VOC composition is found in leaves but not in petals. They are nearly the same in the moss mutants and in the respective wild types. CONCLUSIONS Sepals of moss roses and their parents have a specific VOC pattern, different from that of the petals. The moss corresponds to a heterochronic mutation with trichomes developing on other trichomes. Such a mutation has probably appeared twice and independently in the two lines.
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Affiliation(s)
- JEAN-CLAUDE CAISSARD
- Laboratoire BVpam (Biotechnologies Végétales, plantes aromatiques et médicinales), EA 3061, Université Jean Monnet, 23, rue du Docteur Paul Michelon, 42023 Saint-Etienne cedex 2, France and Laboratoire GEPS (Génome et Evolution des Plantes Supérieures), EA 3731, Bâtiment F.A. Forel, Université Claude Bernard Lyon 1, 43 boulevard du 11 novembre 1918, 69622 Villeurbane cedex, France
| | - VÉRONIQUE BERGOUGNOUX
- Laboratoire BVpam (Biotechnologies Végétales, plantes aromatiques et médicinales), EA 3061, Université Jean Monnet, 23, rue du Docteur Paul Michelon, 42023 Saint-Etienne cedex 2, France and Laboratoire GEPS (Génome et Evolution des Plantes Supérieures), EA 3731, Bâtiment F.A. Forel, Université Claude Bernard Lyon 1, 43 boulevard du 11 novembre 1918, 69622 Villeurbane cedex, France
| | - MAGALI MARTIN
- Laboratoire BVpam (Biotechnologies Végétales, plantes aromatiques et médicinales), EA 3061, Université Jean Monnet, 23, rue du Docteur Paul Michelon, 42023 Saint-Etienne cedex 2, France and Laboratoire GEPS (Génome et Evolution des Plantes Supérieures), EA 3731, Bâtiment F.A. Forel, Université Claude Bernard Lyon 1, 43 boulevard du 11 novembre 1918, 69622 Villeurbane cedex, France
| | - MÉLANIE MAURIAT
- Laboratoire BVpam (Biotechnologies Végétales, plantes aromatiques et médicinales), EA 3061, Université Jean Monnet, 23, rue du Docteur Paul Michelon, 42023 Saint-Etienne cedex 2, France and Laboratoire GEPS (Génome et Evolution des Plantes Supérieures), EA 3731, Bâtiment F.A. Forel, Université Claude Bernard Lyon 1, 43 boulevard du 11 novembre 1918, 69622 Villeurbane cedex, France
| | - SYLVIE BAUDINO
- Laboratoire BVpam (Biotechnologies Végétales, plantes aromatiques et médicinales), EA 3061, Université Jean Monnet, 23, rue du Docteur Paul Michelon, 42023 Saint-Etienne cedex 2, France and Laboratoire GEPS (Génome et Evolution des Plantes Supérieures), EA 3731, Bâtiment F.A. Forel, Université Claude Bernard Lyon 1, 43 boulevard du 11 novembre 1918, 69622 Villeurbane cedex, France
- For correspondence. E-mail
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Abstract
Identified germplasm is an important component for efficient and effective management of plant genetic resources. Traditionally, cultivars or species identification has relied on morphological characters like growth habit or floral morphology like flower colour and other characteristics of the plant. Studies were undertaken for identification and analysis of genetic variation within 34 rose cultivars through random amplified polymorphic DNA (RAPD) markers. Analysis was made by using twenty five decamer primers. Out of twenty five, ten primers were selected and used for identification and analysis of genetic relationships among 34 rose cultivars. A total of 162 distinct DNA fragments ranging from 0.1 to 3.4 kb was amplified by using 10 selected random decamer primers. The genetic similarity was evaluated on the basis of presence or absence of bands. The cluster analysis indicated that the 34 rose cultivars form 9 clusters. The first cluster consists of eight hybrid cultivars, three clusters having five cultivars each, one cluster having four cultivars, two clusters having three cultivars each and two clusters having one cultivar each. The genetic distance was very close within the cultivars. Thus, these RAPD markers have the potential for identification of clusters and characterization of genetic variation within the cultivars. This is also helpful in rose breeding programs and provides a major input into conservation biology.
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Affiliation(s)
- Anuradha Mohapatra
- Plant Biotechnology Division, Regional Plant Resource Centre, Bhubaneswar-751015, Orissa, India
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Pavlov A, Popov S, Kovacheva E, Georgiev M, Ilieva M. Volatile and polar compounds in Rosa damascena Mill 1803 cell suspension. J Biotechnol 2005; 118:89-97. [PMID: 15899533 DOI: 10.1016/j.jbiotec.2005.03.005] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2004] [Revised: 03/01/2005] [Accepted: 03/07/2005] [Indexed: 11/17/2022]
Abstract
Studies were conducted on low molecular metabolites (volatiles and polar compounds) produced by Rosa damascena Mill 1803 cell suspension culture, cultivated under different regimes: as a free suspension (in flasks and in bioreactor) and in a two-phase system (in the presence of Amberlite XAD-4 as a second phase). It was established that the main groups of volatiles were hydrocarbons and free acids and their esters and only traces of terpenoids were found. The main components of polar fraction were free acids, especially amino acids and oxidized acids. Depending on the culture conditions, significant differences were established in the amounts of all compounds under study in biomasses, culture media and adsorbed on the second phase (Amberlite XAD-4).
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Affiliation(s)
- Atanas Pavlov
- Institute of Microbiology, Bulgarian Academy of Sciences, Department of Microbial Biosynthesis and Biotechnologies, Laboratory in Plovdiv, Maritza 26 Blvd., Plovdiv 4002, Bulgaria
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13
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Baydar NG, Baydar H, Debener T. Analysis of genetic relationships among Rosa damascena plants grown in Turkey by using AFLP and microsatellite markers. J Biotechnol 2004; 111:263-7. [PMID: 15246662 DOI: 10.1016/j.jbiotec.2004.04.014] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2003] [Revised: 04/26/2004] [Accepted: 04/30/2004] [Indexed: 11/26/2022]
Abstract
Rosa damascena Mill. is the most important rose species for rose oil production. The main rose oil producers in the world are Turkey and Bulgaria and they obtain the rose oil almost exclusively from R. damascena. In spite of coming from the same original populations, R. damascena plants grown in Turkey show some morphological differences. In this study, it was aimed to investigate the genetic relationships among R. damascena plants grown in Turkey by using microsatellite and AFLP markers. Twenty three AFLP and nine microsatellite primer pairs were used for this aim. No polymorphism could be detected among the plants, as the marker patterns obtained from different plants are identical. The conclusion from these data is that all R. damascena plants under study are derived from the same original genotype by vegetative propagation. Furthermore, the observed morphological differences originate from point mutations not detectable by molecular markers. Therefore, they are equivalent to sport mutations frequently observed in cut and garden rose varieties.
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Affiliation(s)
- Nilgün Göktürk Baydar
- Department of Horticulture, Faculty of Agriculture, University of Süleyman Demirel, 32260 Isparta, Turkey.
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14
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Wang KC, Tang XQ, Sheng ML, Xu XL, Fang Z. [Comparison of the botanic morphology and blooming characteristics of four cultivars of rose]. Zhongguo Zhong Yao Za Zhi 2004; 29:405-8. [PMID: 15706887] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/01/2023]
Abstract
OBJECTIVE To establish identifying method for further development and utilization by studying botanic morphology and blooming characteristics of four varieties of roses in Jiangsu province. METHOD Flower-bud and flower-form were observed by dissection and plant modality and blooming process were investigated. RESULT AND CONCLUSION The flower form and plant modality was obviously different among the 4 varieties of roses. The process of differentiation of flower-bud could be divided into five stages: the transformation of nutritive growth cone, the occurrence and development of sepal, formation of petal primordium, formation of pistil and stamen. The blooming process was made up of flower-bud period, display-petal period, initiating blooming period, blooming period, withering period and corresponding biological marks.
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Affiliation(s)
- Kang-cai Wang
- Nanjing Agriculture University, Nanjing 210095 China.
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15
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Wang D, Fan J, Ranu RS. Cloning and expression of 1-aminocyclopropane-1-carboxylate synthase cDNA from rosa (Rosa x hybrida). Plant Cell Rep 2004; 22:422-429. [PMID: 14579075 DOI: 10.1007/s00299-003-0721-7] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2003] [Revised: 09/05/2003] [Accepted: 09/08/2003] [Indexed: 05/24/2023]
Abstract
The role of 1-aminocyclopropane-1-carboxylate (ACC) synthase in rose flower petal senescence was investigated. A cDNA library from senescing petals of rose ( Rosa x hybrid cv. Kardinal) prepared in lambdacDNA ZAP Express Vector was probed with a rose-specific 400-bp probe, and seven putative positive ACC synthase clones were isolated. Except for differences in length, the sequences of these clones were identical. A full-length clone, RKacc7, 1,750 bp long, coded for an open reading frame of 480 amino acids that contained the 11 conserved amino acid residues, the substrate and pyridoxal 5'-phosphate binding sites, all of which are characteristic of all ACC synthases. The transcripts prepared in vitro from the full-length clone when translated in rabbit reticulocyte lysates exhibited a 55-KDa polypeptide that comigrated with a polypeptide synthesized from a mRNA fraction isolated from senescing petals, and both were immunoselected by anti-ACC synthase antibodies. Reverse transcriptase-PCR-based studies showed that in planta RKacc7 is specifically expressed in rose petals, ovary and sepals. The expression of ACC synthase increased dramatically as the flower matured to senescence and also correlated positively with ethylene levels. The results of genomic Southern blots probed with RKacc7 are consistent with a pattern expected from a multigene family.
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Affiliation(s)
- D Wang
- Laboratory of Plant Molecular Biology/Biotechnology, Department of Bioagricultural Sciences and Pest Management, Colorado State University, Fort Collins, CO 80523-1177, USA
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