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Nguyen HTM, Chu L, Liebhold AM, Epanchin-Niell R, Kean JM, Kompas T, Robinson AP, Brockerhoff EG, Moore JL. Optimal allocation of resources among general and species-specific tools for plant pest biosecurity surveillance. Ecol Appl 2024; 34:e2955. [PMID: 38379349 DOI: 10.1002/eap.2955] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Revised: 09/21/2023] [Accepted: 11/16/2023] [Indexed: 02/22/2024]
Abstract
This paper proposes a surveillance model for plant pests that can optimally allocate resources among survey tools with varying properties. While some survey tools are highly specific for the detection of a single pest species, others are more generalized. There is considerable variation in the cost and sensitivity of these tools, but there are no guidelines or frameworks for identifying which tools are most cost-effective when used in surveillance programs that target the detection of newly invaded populations. To address this gap, we applied our model to design a trapping surveillance program in New Zealand for bark- and wood-boring insects, some of the most serious forest pests worldwide. Our findings show that exclusively utilizing generalized traps (GTs) proves to be highly cost-effective across a wide range of scenarios, particularly when they are capable of capturing all pest species. Implementing surveillance programs that only employ specialized traps (ST) is cost-effective only when these traps can detect highly damaging pests. However, even in such cases, they significantly lag in cost-effectiveness compared to GT-only programs due to their restricted coverage. When both GTs and STs are used in an integrated surveillance program, the total expected cost (TEC) generally diminishes when compared to programs relying on a single type of trap. However, this relative reduction in TEC is only marginally larger than that achieved with GT-only programs, as long as highly damaging species can be detected by GTs. The proportion of STs among the optimal required traps fluctuates based on several factors, including the relative pricing of GTs and STs, pest arrival rates, potential damage, and, more prominently, the coverage capacity of GTs. Our analysis suggests that deploying GTs extensively across landscapes appears to be more cost-effective in areas with either very high or very low levels of relative risk density, potential damage, and arrival rate. Finally, STs are less likely to be required when the pests that are detected by those tools have a higher likelihood of successful eradication because delaying detection becomes less costly for these species.
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Affiliation(s)
- Hoa-Thi-Minh Nguyen
- Crawford School of Public Policy, Australian National University, Canberra, Australian Capital Territory, Australia
| | - Long Chu
- Crawford School of Public Policy, Australian National University, Canberra, Australian Capital Territory, Australia
| | - Andrew M Liebhold
- USDA Forest Service Northern Research Station, Morgantown, West Virginia, USA
- Czech University of Life Sciences, Faculty of Forestry and Wood Sciences, Prague, Czech Republic
| | - Rebecca Epanchin-Niell
- Department of Agricultural and Resource Economics, University of Maryland, College Park, Maryland, USA
| | - John M Kean
- AgResearch Limited, Ruakura Science Centre, Hamilton, New Zealand
| | - Tom Kompas
- Centre of Excellence for Biosecurity Risk Analysis, School of Biosciences and School of Ecosystem and Forest Sciences, University of Melbourne, Melbourne, Victoria, Australia
| | - Andrew P Robinson
- Centre of Excellence for Biosecurity Risk Analysis, Schools of Biosciences and Mathematics and Statistics, University of Melbourne, Melbourne, Victoria, Australia
| | - Eckehard G Brockerhoff
- Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Birmensdorf, Switzerland
| | - Joslin L Moore
- Arthur Rylah Institute for Environmental Research, Department of Energy, Environment and Climate Action, Heidelberg, Victoria, Australia
- School of Biological Sciences, Monash University, Clayton, Victoria, Australia
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Lyman KA, Han Y, Robinson AP, Weinberg SE, Fisher DW, Heuermann RJ, Lyman RE, Kim DK, Ludwig A, Chandel NS, Does MD, Miller SD, Chetkovich DM. Characterization of hyperpolarization-activated cyclic nucleotide-gated channels in oligodendrocytes. Front Cell Neurosci 2024; 18:1321682. [PMID: 38469353 PMCID: PMC10925711 DOI: 10.3389/fncel.2024.1321682] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2023] [Accepted: 02/08/2024] [Indexed: 03/13/2024] Open
Abstract
Mature oligodendrocytes (OLG) are the myelin-forming cells of the central nervous system. Recent work has shown a dynamic role for these cells in the plasticity of neural circuits, leading to a renewed interest in voltage-sensitive currents in OLG. Hyperpolarization-activated cyclic nucleotide-gated (HCN) channels and their respective current (Ih) were recently identified in mature OLG and shown to play a role in regulating myelin length. Here we provide a biochemical and electrophysiological characterization of HCN channels in cells of the oligodendrocyte lineage. We observed that mice with a nonsense mutation in the Hcn2 gene (Hcn2ap/ap) have less white matter than their wild type counterparts with fewer OLG and fewer oligodendrocyte progenitor cells (OPCs). Hcn2ap/ap mice have severe motor impairments, although these deficits were not observed in mice with HCN2 conditionally eliminated only in oligodendrocytes (Cnpcre/+; Hcn2F/F). However, Cnpcre/+; Hcn2F/F mice develop motor impairments more rapidly in response to experimental autoimmune encephalomyelitis (EAE). We conclude that HCN2 channels in OLG may play a role in regulating metabolism.
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Affiliation(s)
- Kyle A. Lyman
- Department of Neurology, Massachusetts General Hospital, Boston, MA, United States
| | - Ye Han
- Department of Neurology, Vanderbilt University Medical Center, Nashville, TN, United States
| | - Andrew P. Robinson
- Department of Microbiology-Immunology and Interdepartmental Immunobiology Center, Northwestern University, Chicago, IL, United States
| | - Samuel E. Weinberg
- Department of Medicine, Northwestern University, Chicago, IL, United States
| | - Daniel W. Fisher
- Department of Psychiatry, University of Washington, Seattle, WA, United States
| | - Robert J. Heuermann
- Department of Neurology, Washington University, St. Louis, MO, United States
| | - Reagan E. Lyman
- Heritage College of Osteopathic Medicine, Ohio University, Dublin, OH, United States
| | - Dong Kyu Kim
- Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, United States
- Vanderbilt University Institute of Imaging Science, Vanderbilt University, Nashville, TN, United States
- Department of Radiology and Radiological Sciences, Vanderbilt University School of Medicine, Nashville, TN, United States
- Department of Electrical Engineering, Vanderbilt University, Nashville, TN, United States
| | - Andreas Ludwig
- Institut fur Experimentelle und Klinische Pharmakologie und Toxikologie, Friedrich-Alexander-Universitat Erlangen-Nurnberg, Erlangen, Germany
| | - Navdeep S. Chandel
- Department of Medicine, Northwestern University, Chicago, IL, United States
| | - Mark D. Does
- Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, United States
- Vanderbilt University Institute of Imaging Science, Vanderbilt University, Nashville, TN, United States
- Department of Radiology and Radiological Sciences, Vanderbilt University School of Medicine, Nashville, TN, United States
- Department of Electrical Engineering, Vanderbilt University, Nashville, TN, United States
| | - Stephen D. Miller
- Department of Microbiology-Immunology and Interdepartmental Immunobiology Center, Northwestern University, Chicago, IL, United States
| | - Dane M. Chetkovich
- Department of Neurology, Vanderbilt University Medical Center, Nashville, TN, United States
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Trouvé R, Robinson AP. Efficient border biosecurity inspection leverages superspreading to reduce biological invasion risk. Risk Anal 2024. [PMID: 38331570 DOI: 10.1111/risa.14277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Subscribe] [Scholar Register] [Indexed: 02/10/2024]
Abstract
Biological invasions are a growing threat to biodiversity, food security, and economies. Rising pressure from increased global trade requires improving border inspection efficiency. Here, we depart from the conventional consignment-by-consignment approach advocated in current inspection standards. Instead, we suggest a broader perspective: evaluating border inspection regimes based on their ability to reduce propagule pressure across entire pathways. Additionally, we demonstrate that most biosecurity pathways exhibit superspreading behavior, that is, consignments from the same pathway have varying infestation rates and contain rare right-tail events (also called overdispersion). We show that greater overdispersion leads to more pronounced diminishing returns, with consequences on the optimal allocation of sampling effort. We leverage these two insights to develop a simple and efficient border inspection regime that can significantly reduce propagule pressure compared to current standards. Our analysis revealed that consignment size is a key driver of biosecurity risk and that sampling proportional to the square root of consignment size is near optimal. In testing, our framework reduced propagule pressure by 31 to 38% compared to current standards. We also identified opportunities to further improve inspection efficiency by considering additional pathway characteristics (i.e., overdispersion parameters, zero inflation, relative risk, sampling cost, detectability) and developed solutions for these more complex scenarios. We anticipate our result will mitigate biological invasion risk with significant implications for biodiversity conservation, food security, and economies worldwide.
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Affiliation(s)
- Raphaël Trouvé
- Centre of Excellence for Biosecurity Risk Analysis (CEBRA), The University of Melbourne, Parkville, Australia
- School of Agriculture, Food and Ecosystem Sciences, The University of Melbourne, Parkville, Australia
| | - Andrew P Robinson
- Centre of Excellence for Biosecurity Risk Analysis (CEBRA), The University of Melbourne, Parkville, Australia
- School of Mathematics and Statistics, The University of Melbourne, Parkville, Australia
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Yasen Z, Robinson AP, Woffenden H. Advanced Preoperative Planning Techniques in the Management of Complex Proximal Humerus Fractures. Cureus 2024; 16:e51551. [PMID: 38313919 PMCID: PMC10835086 DOI: 10.7759/cureus.51551] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/02/2024] [Indexed: 02/06/2024] Open
Abstract
This review evaluates the current literature on the recent advances of preoperative planning in the management of complex proximal humerus fractures (PHF). PHFs can pose a considerable challenge for orthopaedic surgeons due to their diversity in presentation and complexity. Poor preoperative planning can lead to prolonged operations, increased blood loss, higher risk of complications, and increased stress on the surgical team. Recent advances have seen the evolution of preoperative planning from conventional methods to computer-assisted virtual surgical technology (CAVST) and three-dimensional (3D) printing, which have been highlighted as transformative tools for improving preoperative planning and postoperative outcomes. CAVST allows the creation of 3D renderings of patient-specific anatomy, clearly demonstrating fracture patterns and facilitating detailed planning for arthroplasty or surgical fixation. The early studies show promising outcomes however the literature calls for more high-quality randomised controlled trials. Using 3D printing for high-fidelity simulation involving patient-specific physical models offers an immersive experience for surgical planning. Preoperative planning with 3D printing reduces operative time, blood loss and use of fluoroscopy. The technology's potential to produce customisable surgical implants further improves its versatility. There is a need for a cost analysis for the use of these technologies within the orthopaedic field, particularly considering the high expense of 3D printing materials and extended hospital stays until the printed models are available. CAVST and 3D printing also show promising applications within high-fidelity simulation surgical training, with CAVST offering possibilities in virtual reality and haptic-enhanced simulations and 3D printing providing physical models for trainee surgeons to hone their skills. Moving forward, a reduction in the cost of 3D printing and the advancement of CAVST using artificial intelligence would lead to future improvement. In conclusion, preoperative planning supported by these innovative technologies will play a pivotal role in improving surgical outcomes and training for complex PHF cases.
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Affiliation(s)
- Zaid Yasen
- Trauma and Orthopaedics, Royal Free London NHS Foundation Trust, London, GBR
| | - Andrew P Robinson
- Trauma and Orthopaedics, Lewisham and Greenwich NHS Trust, London, GBR
| | - Hugo Woffenden
- General Surgery, HMS Nelson Medical Centre, Ministry of Defence, London, GBR
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Leek F, Anderson C, Robinson AP, Moss RM, Porter JC, Garthwaite HS, Groves AM, Hutton BF, Thielemans K. Optimisation of the air fraction correction for lung PET/CT: addressing resolution mismatch. EJNMMI Phys 2023; 10:77. [PMID: 38049611 PMCID: PMC10695904 DOI: 10.1186/s40658-023-00595-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Accepted: 11/20/2023] [Indexed: 12/06/2023] Open
Abstract
BACKGROUND Increased pulmonary [Formula: see text]F-FDG metabolism in patients with idiopathic pulmonary fibrosis, and other forms of diffuse parenchymal lung disease, can predict measurements of health and lung physiology. To improve PET quantification, voxel-wise air fractions (AF) determined from CT can be used to correct for variable air content in lung PET/CT. However, resolution mismatches between PET and CT can cause artefacts in the AF-corrected image. METHODS Three methodologies for determining the optimal kernel to smooth the CT are compared with noiseless simulations and non-TOF MLEM reconstructions of a patient-realistic digital phantom: (i) the point source insertion-and-subtraction method, [Formula: see text]; (ii) AF-correcting with varyingly smoothed CT to achieve the lowest RMSE with respect to the ground truth (GT) AF-corrected volume of interest (VOI), [Formula: see text]; iii) smoothing the GT image to match the reconstruction within the VOI, [Formula: see text]. The methods were evaluated both using VOI-specific kernels, and a single global kernel optimised for the six VOIs combined. Furthermore, [Formula: see text] was implemented on thorax phantom data measured on two clinical PET/CT scanners with various reconstruction protocols. RESULTS The simulations demonstrated that at [Formula: see text] iterations (200 i), the kernel width was dependent on iteration number and VOI position in the lung. The [Formula: see text] method estimated a lower, more uniform, kernel width in all parts of the lung investigated. However, all three methods resulted in approximately equivalent AF-corrected VOI RMSEs (<10%) at [Formula: see text]200i. The insensitivity of AF-corrected quantification to kernel width suggests that a single global kernel could be used. For all three methodologies, the computed global kernel resulted in an AF-corrected lung RMSE <10% at [Formula: see text]200i, while larger lung RMSEs were observed for the VOI-specific kernels. The global kernel approach was then employed with the [Formula: see text] method on measured data. The optimally smoothed GT emission matched the reconstructed image well, both within the VOI and the lung background. VOI RMSE was <10%, pre-AFC, for all reconstructions investigated. CONCLUSIONS Simulations for non-TOF PET indicated that around 200i were needed to approach image resolution stability in the lung. In addition, at this iteration number, a single global kernel, determined from several VOIs, for AFC, performed well over the whole lung. The [Formula: see text] method has the potential to be used to determine the kernel for AFC from scans of phantoms on clinical scanners.
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Affiliation(s)
- Francesca Leek
- Institute of Nuclear Medicine, University College London Hospitals NHS Trust, London, UK.
- Nuclear Medicine Metrology, National Physical Laboratory, Teddington, UK.
| | - Cameron Anderson
- Institute of Nuclear Medicine, University College London Hospitals NHS Trust, London, UK
| | - Andrew P Robinson
- Nuclear Medicine Metrology, National Physical Laboratory, Teddington, UK
- Christie Medical Physics and Engineering, The Christie NHS Foundation Trust, Manchester, UK
- Schuster Laboratory, School of Physics and Astronomy, University of Manchester, Manchester, UK
| | - Robert M Moss
- Department of Medical Physics and Biomedical Engineering, University College London, London, UK
| | - Joanna C Porter
- UCL Respiratory, University College London and Interstitial Lung Disease Service, University College London Hospitals NHS Trust, London, UK
| | - Helen S Garthwaite
- UCL Respiratory, University College London and Interstitial Lung Disease Service, University College London Hospitals NHS Trust, London, UK
| | - Ashley M Groves
- Institute of Nuclear Medicine, University College London Hospitals NHS Trust, London, UK
| | - Brian F Hutton
- Institute of Nuclear Medicine, University College London Hospitals NHS Trust, London, UK
| | - Kris Thielemans
- Institute of Nuclear Medicine, University College London Hospitals NHS Trust, London, UK
- Centre for Medical Image Computing, University College London, London, UK
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Yasen Z, Woffenden H, Robinson AP. Robotic-Assisted Knee Arthroplasty: Insights and Implications From Current Literature. Cureus 2023; 15:e50852. [PMID: 38249205 PMCID: PMC10798799 DOI: 10.7759/cureus.50852] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/20/2023] [Indexed: 01/23/2024] Open
Abstract
Robotic-assisted knee arthroplasty has emerged as a promising development, aiming to enhance surgical precision and patient outcomes. This literature review examines the clinical efficacy, cost implications, environmental impact, and potential of telesurgery in robotic-assisted total knee arthroplasty (RATKA) and robotic-assisted unicompartmental knee arthroplasty (RAUKA) relative to conventional techniques. A thorough literature search was conducted across medical databases. Clinical and radiological outcomes of RATKA and RAUKA were extracted and analyzed. Direct costs, operating time, surgeon learning curve, environmental implications, and the futuristic concept of telesurgery were also considered. Subjective patient assessments such as WOMAC, Oxford Knee Score, and SF-36, alongside objective measures like HSS score and KSS, were commonly used. Radiological parameters like hip-knee-ankle (HKA) and femorotibial angle provided insights into post-operative alignment. Evidence indicated sporadic high-level design studies, often with limited samples. Cost remains a major constraint with robotic systems, though high-volume cases might offset expenses. Environmental assessments revealed robotic surgeries generate a higher carbon footprint. Telesurgery, an evolving field, could transcend geographical boundaries but is not without challenges, including high costs, latency issues, and cyber threats. While robotic-assisted surgeries may hold promise in the future, substantial barriers, including acquisition costs, potential surgeon deskilling, and environmental concerns, need addressing. Greater robot utilization may drive costs down with more competitors entering the market. Continued research, especially multi-center RCTs, is pivotal to solidifying the role of robotic systems in knee arthroplasty.
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Affiliation(s)
- Zaid Yasen
- Trauma and Orthopedics, Royal Free Hospital, London, GBR
- Surgery and Cancer, Imperial College London, London, GBR
| | - Hugo Woffenden
- Trauma and Orthopedics, Ministry of Defence, Portsmouth, GBR
| | - Andrew P Robinson
- Trauma and Orthopedics, Lewisham and Greenwich NHS Trust, London, GBR
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Collins SM, Köster U, Robinson AP, Ivanov P, Cocolios TE, Russell B, Fenwick AJ, Bernerd C, Stegemann S, Johnston K, Gerami AM, Chrysalidis K, Mohamud H, Ramirez N, Bhaisare A, Mewburn-Crook J, Cullen DM, Pietras B, Pells S, Dockx K, Stucki N, Regan PH. Determination of the Terbium-152 half-life from mass-separated samples from CERN-ISOLDE and assessment of the radionuclide purity. Appl Radiat Isot 2023; 202:111044. [PMID: 37797447 DOI: 10.1016/j.apradiso.2023.111044] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Revised: 09/15/2023] [Accepted: 09/22/2023] [Indexed: 10/07/2023]
Abstract
Terbium-152 is one of four terbium radioisotopes that together form a potential theranostic toolbox for the personalised treatment of tumours. As 152 Tb decay by positron emission it can be utilised for diagnostics by positron emission tomography. For use in radiopharmaceuticals and for activity measurements by an activity calibrator a high radionuclide purity of the material and an accurate and precise knowledge of the half-life is required. Mass-separation and radiochemical purification provide a production route of high purity 152Tb. In the current work, two mass-separated samples from the CERN-ISOLDE facility have been assayed at the National Physical Laboratory to investigate the radionuclide purity. These samples have been used to perform four measurements of the half-life by three independent techniques: high-purity germanium gamma-ray spectrometry, ionisation chamber measurements and liquid scintillation counting. From the four measurement campaigns a half-life of 17.8784(95) h has been determined. The reported half-life shows a significant difference to the currently evaluated half-life (ζ-score = 3.77), with a relative difference of 2.2 % and an order of magnitude improvement in the precision. This work also shows that under controlled conditions the combination of mass-separation and radiochemical separation can provide high-purity 152Tb.
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Affiliation(s)
- S M Collins
- National Physical Laboratory, Hampton Road, Teddington, TW11 0LW, UK; School of Mathematics and Physics, University of Surrey, Guildford, GU2 7XH, UK.
| | - U Köster
- Institut Laue-Langevin, 38042, Grenoble, France
| | - A P Robinson
- National Physical Laboratory, Hampton Road, Teddington, TW11 0LW, UK; Christie Medical Physics and Engineering (CMPE), The Christie NHS Foundation Trust, Manchester, M20 4BX, UK; The University of Manchester, Manchester, M13 9PL, UK
| | - P Ivanov
- National Physical Laboratory, Hampton Road, Teddington, TW11 0LW, UK
| | - T E Cocolios
- KU Leuven, Institute for Nuclear and Radiation Physics, Celestijnenlaan 200D, 3001, Leuven, Belgium
| | - B Russell
- National Physical Laboratory, Hampton Road, Teddington, TW11 0LW, UK
| | - A J Fenwick
- National Physical Laboratory, Hampton Road, Teddington, TW11 0LW, UK
| | - C Bernerd
- KU Leuven, Institute for Nuclear and Radiation Physics, Celestijnenlaan 200D, 3001, Leuven, Belgium; CERN - European Organization for Nuclear Research, Esplanade des Particules 1, 1217, Meyrin, Switzerland
| | - S Stegemann
- KU Leuven, Institute for Nuclear and Radiation Physics, Celestijnenlaan 200D, 3001, Leuven, Belgium
| | - K Johnston
- CERN - European Organization for Nuclear Research, Esplanade des Particules 1, 1217, Meyrin, Switzerland
| | - A M Gerami
- CERN - European Organization for Nuclear Research, Esplanade des Particules 1, 1217, Meyrin, Switzerland
| | - K Chrysalidis
- CERN - European Organization for Nuclear Research, Esplanade des Particules 1, 1217, Meyrin, Switzerland
| | - H Mohamud
- National Physical Laboratory, Hampton Road, Teddington, TW11 0LW, UK
| | - N Ramirez
- National Physical Laboratory, Hampton Road, Teddington, TW11 0LW, UK
| | - A Bhaisare
- National Physical Laboratory, Hampton Road, Teddington, TW11 0LW, UK
| | - J Mewburn-Crook
- National Physical Laboratory, Hampton Road, Teddington, TW11 0LW, UK
| | - D M Cullen
- The University of Manchester, Manchester, M13 9PL, UK
| | - B Pietras
- The University of Manchester, Manchester, M13 9PL, UK
| | - S Pells
- The University of Manchester, Manchester, M13 9PL, UK
| | - K Dockx
- KU Leuven, Institute for Nuclear and Radiation Physics, Celestijnenlaan 200D, 3001, Leuven, Belgium
| | - N Stucki
- HEPIA, HES-SO, University of Applied Sciences and Arts Western Switzerland, Rue de la Prairie 4, 1202, Geneva, Switzerland
| | - P H Regan
- National Physical Laboratory, Hampton Road, Teddington, TW11 0LW, UK; School of Mathematics and Physics, University of Surrey, Guildford, GU2 7XH, UK
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Tran-Gia J, Denis-Bacelar AM, Ferreira KM, Robinson AP, Bobin C, Bonney LM, Calvert N, Collins SM, Fenwick AJ, Finocchiaro D, Fioroni F, Giannopoulou K, Grassi E, Heetun W, Jewitt SJ, Kotzasarlidou M, Ljungberg M, Lourenço V, McGowan DR, Mewburn-Crook J, Sabot B, Scuffham J, Sjögreen Gleisner K, Solc J, Thiam C, Tipping J, Wevrett J, Lassmann M. On the use of solid 133Ba sources as surrogate for liquid 131I in SPECT/CT calibration: a European multi-centre evaluation. EJNMMI Phys 2023; 10:73. [PMID: 37993667 PMCID: PMC10665282 DOI: 10.1186/s40658-023-00582-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Accepted: 09/25/2023] [Indexed: 11/24/2023] Open
Abstract
INTRODUCTION Commissioning, calibration, and quality control procedures for nuclear medicine imaging systems are typically performed using hollow containers filled with radionuclide solutions. This leads to multiple sources of uncertainty, many of which can be overcome by using traceable, sealed, long-lived surrogate sources containing a radionuclide of comparable energies and emission probabilities. This study presents the results of a quantitative SPECT/CT imaging comparison exercise performed within the MRTDosimetry consortium to assess the feasibility of using 133Ba as a surrogate for 131I imaging. MATERIALS AND METHODS Two sets of four traceable 133Ba sources were produced at two National Metrology Institutes and encapsulated in 3D-printed cylinders (volume range 1.68-107.4 mL). Corresponding hollow cylinders to be filled with liquid 131I and a mounting baseplate for repeatable positioning within a Jaszczak phantom were also produced. A quantitative SPECT/CT imaging comparison exercise was conducted between seven members of the consortium (eight SPECT/CT systems from two major vendors) based on a standardised protocol. Each site had to perform three measurements with the two sets of 133Ba sources and liquid 131I. RESULTS As anticipated, the 131I pseudo-image calibration factors (cps/MBq) were higher than those for 133Ba for all reconstructions and systems. A site-specific cross-calibration reduced the performance differences between both radionuclides with respect to a cross-calibration based on the ratio of emission probabilities from a median of 12-1.5%. The site-specific cross-calibration method also showed agreement between 133Ba and 131I for all cylinder volumes, which highlights the potential use of 133Ba sources to calculate recovery coefficients for partial volume correction. CONCLUSION This comparison exercise demonstrated that traceable solid 133Ba sources can be used as surrogate for liquid 131I imaging. The use of solid surrogate sources could solve the radiation protection problem inherent in the preparation of phantoms with 131I liquid activity solutions as well as reduce the measurement uncertainties in the activity. This is particularly relevant for stability measurements, which have to be carried out at regular intervals.
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Affiliation(s)
- Johannes Tran-Gia
- Department of Nuclear Medicine, University Hospital Würzburg, Oberdürrbacher Str. 6, 97080, Würzburg, Germany.
| | | | | | | | - Christophe Bobin
- Université Paris-Saclay, CEA, List, Laboratoire National Henri Becquerel (LNE-LNHB), 91120, Palaiseau, France
| | - Lara M Bonney
- Department of Medical Physics and Clinical Engineering, Churchill Hospital, Oxford University Hospitals NHS Foundation Trust, Oxford, UK
| | - Nicholas Calvert
- Christie Medical Physics and Engineering (CMPE), The Christie NHS Foundation Trust, Manchester, UK
| | - Sean M Collins
- National Physical Laboratory, Hampton Road, Teddington, UK
- School of Mathematics and Physics, University of Surrey, Guildford, UK
| | | | - Domenico Finocchiaro
- Medical Physics Unit, Azienda Ospedaliero-Universitaria Policlinico di Modena, Modena, Italy
| | - Federica Fioroni
- Medical Physics Unit, Azienda USL-IRCCS Di Reggio Emilia, Reggio Emilia, Italy
| | | | - Elisa Grassi
- Medical Physics Unit, Azienda USL-IRCCS Di Reggio Emilia, Reggio Emilia, Italy
| | - Warda Heetun
- National Physical Laboratory, Hampton Road, Teddington, UK
| | - Stephanie J Jewitt
- Department of Medical Physics and Clinical Engineering, Churchill Hospital, Oxford University Hospitals NHS Foundation Trust, Oxford, UK
| | - Maria Kotzasarlidou
- Nuclear Medicine Department, "THEAGENIO" Anticancer Hospital, Thessaloniki, Greece
| | | | - Valérie Lourenço
- Université Paris-Saclay, CEA, List, Laboratoire National Henri Becquerel (LNE-LNHB), 91120, Palaiseau, France
| | - Daniel R McGowan
- Department of Medical Physics and Clinical Engineering, Churchill Hospital, Oxford University Hospitals NHS Foundation Trust, Oxford, UK
- Department of Oncology, University of Oxford, Oxford, UK
| | | | - Benoit Sabot
- Université Paris-Saclay, CEA, List, Laboratoire National Henri Becquerel (LNE-LNHB), 91120, Palaiseau, France
| | - James Scuffham
- Royal Surrey County Hospital, Royal Surrey NHS Foundation Trust, Guildford, UK
| | | | - Jaroslav Solc
- Czech Metrology Institute, Okruzni 31, 638 00, Brno, Czech Republic
| | - Cheick Thiam
- Université Paris-Saclay, CEA, List, Laboratoire National Henri Becquerel (LNE-LNHB), 91120, Palaiseau, France
| | - Jill Tipping
- Department of Medical Physics and Clinical Engineering, Churchill Hospital, Oxford University Hospitals NHS Foundation Trust, Oxford, UK
| | - Jill Wevrett
- Royal Surrey County Hospital, Royal Surrey NHS Foundation Trust, Guildford, UK
| | - Michael Lassmann
- Department of Nuclear Medicine, University Hospital Würzburg, Oberdürrbacher Str. 6, 97080, Würzburg, Germany
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Pells S, Cullen DM, Deidda D, Denis-Bacelar AM, Fenwick A, Ferreira KM, Hamilton D, Heetun W, Julyan P, Needham G, Pietras B, Price E, Scuffham J, Tipping J, Robinson AP. Quantitative validation of Monte Carlo SPECT simulation: application to a Mediso AnyScan GATE simulation. EJNMMI Phys 2023; 10:60. [PMID: 37777689 PMCID: PMC10542438 DOI: 10.1186/s40658-023-00581-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Accepted: 09/15/2023] [Indexed: 10/02/2023] Open
Abstract
BACKGROUND Monte Carlo (MC) simulations are used in nuclear medicine imaging as they provide unparalleled insight into processes that are not directly experimentally measurable, such as scatter and attenuation in an acquisition. Whilst MC is often used to provide a 'ground-truth', this is only the case if the simulation is fully validated against experimental data. This work presents a quantitative validation for a MC simulation of a single-photon emission computed tomography (SPECT) system. METHODS An MC simulation model of the Mediso AnyScan SCP SPECT system installed at the UK National Physical Laboratory was developed in the GATE (Geant4 Application for Tomographic Emission) toolkit. Components of the detector head and two collimator configurations were modelled according to technical specifications and physical measurements. Experimental detection efficiency measurements were collected for a range of energies, permitting an energy-dependent intrinsic camera efficiency correction function to be determined and applied to the simulation on an event-by-event basis. Experimental data were collected in a range of geometries with [Formula: see text]Tc for comparison to simulation. The procedure was then repeated with [Formula: see text]Lu to determine how the validation extended to another isotope and set of collimators. RESULTS The simulation's spatial resolution, sensitivity, energy spectra and the projection images were compared with experimental measurements. The simulation and experimental uncertainties were determined and propagated to all calculations, permitting the quantitative agreement between simulated and experimental SPECT acquisitions to be determined. Statistical agreement was seen in sinograms and projection images of both [Formula: see text]Tc and [Formula: see text]Lu data. Average simulated and experimental sensitivity ratios of ([Formula: see text]) were seen for emission and scatter windows of [Formula: see text]Tc, and ([Formula: see text]) and ([Formula: see text]) for the 113 and 208 keV emissions of [Formula: see text]Lu, respectively. CONCLUSIONS MC simulations will always be an approximation of a physical system and the level of agreement should be assessed. A validation method is presented to quantify the level of agreement between a simulation model and a physical SPECT system.
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Affiliation(s)
- Sophia Pells
- Department of Physics and Astronomy, The University of Manchester, Manchester, UK.
- National Physical Laboratory, Teddington, UK.
- Department of Radiology, UMass Chan Medical School, Worcester, MA, USA.
| | - David M Cullen
- Department of Physics and Astronomy, The University of Manchester, Manchester, UK
| | | | | | | | | | | | | | - Peter Julyan
- The Christie NHS Foundation Trust, Manchester, UK
| | - George Needham
- Department of Physics and Astronomy, The University of Manchester, Manchester, UK
- The Christie NHS Foundation Trust, Manchester, UK
| | - Ben Pietras
- Department of Physics and Astronomy, The University of Manchester, Manchester, UK
| | - Emlyn Price
- Department of Physics and Astronomy, The University of Manchester, Manchester, UK
| | - James Scuffham
- National Physical Laboratory, Teddington, UK
- Royal Surrey County Hospital, Guildford, UK
| | - Jill Tipping
- The Christie NHS Foundation Trust, Manchester, UK
| | - Andrew P Robinson
- Department of Physics and Astronomy, The University of Manchester, Manchester, UK
- National Physical Laboratory, Teddington, UK
- The Christie NHS Foundation Trust, Manchester, UK
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10
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Deidda D, Denis-Bacelar AM, Fenwick AJ, Ferreira KM, Heetun W, Hutton BF, McGowan DR, Robinson AP, Scuffham J, Thielemans K, Twyman R. Triple modality image reconstruction of PET data using SPECT, PET, CT information increases lesion uptake in images of patients treated with radioembolization with [Formula: see text] micro-spheres. EJNMMI Phys 2023; 10:30. [PMID: 37133766 PMCID: PMC10156904 DOI: 10.1186/s40658-023-00549-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Accepted: 04/13/2023] [Indexed: 05/04/2023] Open
Abstract
PURPOSE Nuclear medicine imaging modalities like computed tomography (CT), single photon emission CT (SPECT) and positron emission tomography (PET) are employed in the field of theranostics to estimate and plan the dose delivered to tumors and the surrounding tissues and to monitor the effect of the therapy. However, therapeutic radionuclides often provide poor images, which translate to inaccurate treatment planning and inadequate monitoring images. Multimodality information can be exploited in the reconstruction to enhance image quality. Triple modality PET/SPECT/CT scanners are particularly useful in this context due to the easier registration process between images. In this study, we propose to include PET, SPECT and CT information in the reconstruction of PET data. The method is applied to Yttrium-90 ([Formula: see text]Y) data. METHODS Data from a NEMA phantom filled with [Formula: see text]Y were used for validation. PET, SPECT and CT data from 10 patients treated with Selective Internal Radiation Therapy (SIRT) were used. Different combinations of prior images using the Hybrid kernelized expectation maximization were investigated in terms of VOI activity and noise suppression. RESULTS Our results show that triple modality PET reconstruction provides significantly higher uptake when compared to the method used as standard in the hospital and OSEM. In particular, using CT-guided SPECT images, as guiding information in the PET reconstruction significantly increases uptake quantification on tumoral lesions. CONCLUSION This work proposes the first triple modality reconstruction method and demonstrates up to 69% lesion uptake increase over standard methods with SIRT [Formula: see text]Y patient data. Promising results are expected for other radionuclide combination used in theranostic applications using PET and SPECT.
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Affiliation(s)
- Daniel Deidda
- National Physical Laboratory, Teddington, UK
- Nuclear Medicine Institute, University College London, London, UK
| | | | | | | | | | - Brian F. Hutton
- Nuclear Medicine Institute, University College London, London, UK
| | - Daniel R. McGowan
- Oxford University Hospitals NHS Foundation Trust, Oxford, UK
- University of Oxford, Oxford, UK
| | | | | | - Kris Thielemans
- Nuclear Medicine Institute, University College London, London, UK
- Centre for Medical Image Computing, University College London, London, UK
| | - Robert Twyman
- Nuclear Medicine Institute, University College London, London, UK
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11
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Robinson AP, Calvert N, Tipping J, Denis-Bacelar AM, Ferreira KM, Lassmann M, Tran-Gia J. Development of a validation imaging dataset for Molecular Radiotherapy dosimetry multicenter intercomparison exercises based on anthropomorphic phantoms. Phys Med 2023; 109:102583. [PMID: 37062101 PMCID: PMC10165308 DOI: 10.1016/j.ejmp.2023.102583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Revised: 03/23/2023] [Accepted: 04/06/2023] [Indexed: 04/18/2023] Open
Abstract
Validation of a Molecular Radiotherapy (MRT) dosimetry system requires imaging data for which an accompanying "ground truth" pharmacokinetic model and absorbed dose calculation are known. METHODS We present a methodology for production of a validation dataset for image based 177Lu dotatate dosimetry calculations. A pharmacokinetic model is presented with activity concentrations corresponding to common imaging timepoints. Anthropomorphic 3D printed phantoms, corresponding to the organs at risk, have been developed to provide SPECT/CT and Whole Body imaging with known organ activities corresponding to common clinical timepoints. RESULTS Results for the accuracy of phantom filling reproduce the activity concentrations from the pharmacokinetic model for all timepoints and organs within measurement uncertainties, with a mean deviation of 0.6(8)%. The imaging dataset, ancillary data and phantoms designs are provided as a source of well characterized input data for the validation of clinical MRT dosimetry systems. CONCLUSIONS The combination of pharmacokinetic modelling with the use of anthropomorphic 3D printed phantoms are a promising procedure to provide data for the validation of Molecular Radiotherapy Dosimetry systems, allowing multicentre comparisons.
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Affiliation(s)
- Andrew P Robinson
- National Physical Laboratory, Teddington, TW11 0LW, United Kingdom; Christie Medical Physics and Engineering (CMPE), The Christie NHS Foundation Trust, Wilmslow Road, Manchester M20 4BX, United Kingdom; Schuster Laboratory, School of Physics and Astronomy, The University of Manchester, Manchester M13 9PL, United Kingdom.
| | - Nick Calvert
- Christie Medical Physics and Engineering (CMPE), The Christie NHS Foundation Trust, Wilmslow Road, Manchester M20 4BX, United Kingdom
| | - Jill Tipping
- Christie Medical Physics and Engineering (CMPE), The Christie NHS Foundation Trust, Wilmslow Road, Manchester M20 4BX, United Kingdom
| | | | | | - Michael Lassmann
- Department of Nuclear Medicine, University Hospital Würzburg, Oberdürrbacher Str. 6, 97080 Würzburg, Germany
| | - Johannes Tran-Gia
- Department of Nuclear Medicine, University Hospital Würzburg, Oberdürrbacher Str. 6, 97080 Würzburg, Germany
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12
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Titus HE, Xu H, Robinson AP, Patel PA, Chen Y, Fantini D, Eaton V, Karl M, Garrison ED, Rose IVL, Chiang MY, Podojil JR, Balabanov R, Liddelow SA, Miller RH, Popko B, Miller SD. Repurposing the cardiac glycoside digoxin to stimulate myelin regeneration in chemically-induced and immune-mediated mouse models of multiple sclerosis. Glia 2022; 70:1950-1970. [PMID: 35809238 PMCID: PMC9378523 DOI: 10.1002/glia.24231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Revised: 06/07/2022] [Accepted: 06/14/2022] [Indexed: 11/24/2022]
Abstract
Multiple sclerosis (MS) is a central nervous system (CNS) autoimmune disease characterized by inflammation, demyelination, and neurodegeneration. The ideal MS therapy would both specifically inhibit the underlying autoimmune response and promote repair/regeneration of myelin as well as maintenance of axonal integrity. Currently approved MS therapies consist of non-specific immunosuppressive molecules/antibodies which block activation or CNS homing of autoreactive T cells, but there are no approved therapies for stimulation of remyelination nor maintenance of axonal integrity. In an effort to repurpose an FDA-approved medication for myelin repair, we chose to examine the effectiveness of digoxin, a cardiac glycoside (Na+ /K+ ATPase inhibitor), originally identified as pro-myelinating in an in vitro screen. We found that digoxin regulated multiple genes in oligodendrocyte progenitor cells (OPCs) essential for oligodendrocyte (OL) differentiation in vitro, promoted OL differentiation both in vitro and in vivo in female naïve C57BL/6J (B6) mice, and stimulated recovery of myelinated axons in B6 mice following demyelination in the corpus callosum induced by cuprizone and spinal cord demyelination induced by lysophosphatidylcholine (LPC), respectively. More relevant to treatment of MS, we show that digoxin treatment of mice with established MOG35-55 -induced Th1/Th17-mediated chronic EAE combined with tolerance induced by the i.v. infusion of biodegradable poly(lactide-co-glycolide) nanoparticles coupled with MOG35-55 (PLG-MOG35-55 ) completely ameliorated clinical disease symptoms and stimulated recovery of OL lineage cell numbers. These findings provide critical pre-clinical evidence supporting future clinical trials of myelin-specific tolerance with myelin repair/regeneration drugs, such as digoxin, in MS patients.
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Affiliation(s)
- Haley E. Titus
- Department of Microbiology‐Immunology and the Interdepartmental Immunobiology CenterNorthwestern University Feinberg School of MedicineChicagoIllinoisUSA
| | - Huan Xu
- NeurologyNorthwestern University Feinberg School of MedicineChicagoIllinoisUSA
| | - Andrew P. Robinson
- Department of Microbiology‐Immunology and the Interdepartmental Immunobiology CenterNorthwestern University Feinberg School of MedicineChicagoIllinoisUSA
| | - Priyam A. Patel
- Quantitative Data Science Core Center for Genetic MedicineNorthwestern University Feinberg School of MedicineChicagoIllinoisUSA
| | - Yanan Chen
- NeurologyNorthwestern University Feinberg School of MedicineChicagoIllinoisUSA
| | - Damiano Fantini
- UrologyNorthwestern University Feinberg School of MedicineChicagoIllinoisUSA
| | - Valerie Eaton
- Department of Microbiology‐Immunology and the Interdepartmental Immunobiology CenterNorthwestern University Feinberg School of MedicineChicagoIllinoisUSA
| | - Molly Karl
- Department of Anatomy and Cell BiologyThe George Washington University School of Medicine and Health SciencesWashingtonDistrict of ColumbiaUSA
| | - Eric D. Garrison
- Department of Anatomy and Cell BiologyThe George Washington University School of Medicine and Health SciencesWashingtonDistrict of ColumbiaUSA
| | - Indigo V. L. Rose
- Neuroscience Institute and Departments of Neuroscience, & Physiology, and OphthalmologyNew York University Grossman School of MedicineNew YorkNew YorkUSA
| | - Ming Yi Chiang
- Department of Microbiology‐Immunology and the Interdepartmental Immunobiology CenterNorthwestern University Feinberg School of MedicineChicagoIllinoisUSA
| | - Joseph R. Podojil
- Department of Microbiology‐Immunology and the Interdepartmental Immunobiology CenterNorthwestern University Feinberg School of MedicineChicagoIllinoisUSA
- Cour Pharmaceutical Development CompanyNorthbrookIllinoisUSA
| | - Roumen Balabanov
- NeurologyNorthwestern University Feinberg School of MedicineChicagoIllinoisUSA
| | - Shane A. Liddelow
- Neuroscience Institute and Departments of Neuroscience, & Physiology, and OphthalmologyNew York University Grossman School of MedicineNew YorkNew YorkUSA
| | - Robert H. Miller
- Department of Anatomy and Cell BiologyThe George Washington University School of Medicine and Health SciencesWashingtonDistrict of ColumbiaUSA
| | - Brian Popko
- NeurologyNorthwestern University Feinberg School of MedicineChicagoIllinoisUSA
| | - Stephen D. Miller
- Department of Microbiology‐Immunology and the Interdepartmental Immunobiology CenterNorthwestern University Feinberg School of MedicineChicagoIllinoisUSA
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13
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Trouvé R, Arthur AD, Robinson AP. Assessing the quality of offshore Binomial sampling biosecurity inspections using onshore inspections. Ecol Appl 2022; 32:e2595. [PMID: 35344236 DOI: 10.1002/eap.2595] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Revised: 10/24/2021] [Accepted: 11/23/2021] [Indexed: 06/14/2023]
Abstract
Introduction of pests and diseases through trade is one of the main socio-ecological challenges worldwide. Although Binomial sampling inspection at the border can reduce pest entry risk, it is common for consignments to fail inspection, wasting resources for both exporter and importer. Outsourcing the inspection to the exporting country could reduce the cost of inspection for both parties. However, there is then a need to assess the quality of the offshore inspection. In this paper, we develop an inverse method combining past inspection data on the pathway, an onshore inspection sample, and the Beta-Binomial model to infer the sample size of the offshore inspection. We illustrate the method on two case studies: the importation of live plants through germplasm into Australia and the importation of pelleted seeds in New Zealand. In these case studies, we found that detecting four to five infested units in a single onshore inspection was typically sufficient to significantly doubt the presence of a compliant offshore inspection. We also ran a simulation experiment to quantify the statistical power to reject or accept the presence of compliant offshore inspection in practice: In highly infested pathways, we could detect the absence of offshore inspections after inspecting five consignments onshore. Less infested pathways required inspecting 20 to 60 consignments onshore. Our study demonstrates that Binomial sampling onshore can be used to assess the quality of offshore inspections.
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Affiliation(s)
- Raphaël Trouvé
- CEBRA & School of Ecosystem and Forest Sciences, The University of Melbourne, Parkville, Victoria, Australia
| | - Anthony D Arthur
- Australian Bureau of Agricultural and Resource Economics and Sciences, Canberra, Australian Capital Territory, Australia
| | - Andrew P Robinson
- CEBRA & School of Mathematics and Statistics, The University of Melbourne, Parkville, Victoria, Australia
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14
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Hanea AM, Hilton Z, Knight B, P. Robinson A. Co-designing and building an expert-elicited non-parametric Bayesian network model: demonstrating a methodology using a Bonamia Ostreae spread risk case study. Risk Anal 2022; 42:1235-1254. [PMID: 35187670 PMCID: PMC9303608 DOI: 10.1111/risa.13904] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The development and use of probabilistic models, particularly Bayesian networks (BN), to support risk-based decision making is well established. Striking an efficient balance between satisfying model complexity and ease of development requires continuous compromise. Codesign, wherein the structural content of the model is developed hand-in-hand with the experts who will be accountable for the parameter estimates, shows promise, as do so-called nonparametric Bayesian networks (NPBNs), which provide a light-touch approach to capturing complex relationships among nodes. We describe and demonstrate the process of codesigning, building, quantifying, and validating an NPBN model for emerging risks and the consequences of potential management decisions using structured expert judgment (SEJ). We develop a case study of the local spread of a marine pathogen, namely, Bonamia ostreae. The BN was developed through a series of semistructured workshops that incorporated extensive feedback from many experts. The model was then quantified with a combination of field and expert-elicited data. The IDEA protocol for SEJ was used in its hybrid (remote and face-to-face) form to elicit information about more than 100 parameters. This article focuses on the modeling and quantification process, the methodological challenges, and the way these were addressed.
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Affiliation(s)
- Anca M. Hanea
- Centre of Excellence for Biosecurity Risk AnalysisUniversity of MelbourneParkvilleVictoriaAustralia
| | | | | | - Andrew P. Robinson
- Centre of Excellence for Biosecurity Risk AnalysisUniversity of MelbourneParkvilleVictoriaAustralia
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15
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Hauser CE, Giljohann KM, McCarthy MA, Garrard GE, Robinson AP, Williams NSG, Moore JL. A field experiment characterizing variable detection rates during plant surveys. Conserv Biol 2022; 36:e13888. [PMID: 35098569 PMCID: PMC9303269 DOI: 10.1111/cobi.13888] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/20/2021] [Revised: 11/10/2021] [Accepted: 11/12/2021] [Indexed: 06/14/2023]
Abstract
Surveys aimed at finding threatened and invasive species can be challenging due to individual rarity and low and variable individual detection rates. Detection rate in plant surveys typically varies due to differences among observers, among the individual plants being surveyed (targets), and across background environments. Interactions among these 3 components may occur but are rarely estimated due to limited replication and control during data collection. We conducted an experiment to investigate sources of variation in detection of 2 Pilosella species that are invasive and sparsely distributed in the Alpine National Park, Australia. These species are superficially similar in appearance to other yellow-flowered plants occurring in this landscape. We controlled the presence and color of flowers on target Pilosella plants and controlled their placement in plots, which were selected for their variation in cover of non-target yellow flowers and dominant vegetation type. Observers mimicked Pilosella surveys in the plots and reported 1 categorical and 4 quantitative indicators of their survey experience level. We applied survival analysis to detection data to model the influence of both controlled and uncontrolled variables on detection rate. Orange- and yellow-flowering Pilosella in grass- and heath-dominated vegetation were detected at a higher rate than nonflowering Pilosella. However, this detection gain diminished as the cover of other co-occurring yellow-flowering species increased. Recent experience with Pilosella surveys improved detection rate. Detection experiments are a direct and accessible means of understanding detection processes and interpreting survey data for threatened and invasive species. Our detection findings have been used for survey planning and can inform progress toward eradication. Interaction of target and background characteristics determined detection rate, which enhanced predictions in the Pilosella eradication program and demonstrated the difficulty of transferring detection findings into untested environments.
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Affiliation(s)
- Cindy E. Hauser
- School of BioSciencesUniversity of MelbourneParkvilleVictoriaAustralia
- Arthur Rylah InstituteDepartment of Environment, Land, Water and PlanningHeidelbergVictoriaAustralia
| | | | | | - Georgia E. Garrard
- School of Ecosystem and Forest SciencesUniversity of MelbourneParkvilleVictoriaAustralia
| | - Andrew P. Robinson
- Centre of Excellence for Biosecurity Risk AnalysisUniversity of MelbourneParkvilleVictoriaAustralia
| | | | - Joslin L. Moore
- School of Biological SciencesMonash UniversityClaytonVictoriaAustralia
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16
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Hatami R, Inglis G, Lane SE, Growcott A, Kluza D, Lubarsky C, Jones-Todd C, Seaward K, Robinson AP. Modelling the likelihood of entry of marine non-indigenous species from internationally arriving vessels to maritime ports: a case study using New Zealand data. NB 2022. [DOI: 10.3897/neobiota.72.77266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
The establishment of marine non-indigenous species (NIS) in new locations can degrade environmental, socio-cultural, and economic values. Vessels arriving from international waters are the main pathway for the entry of marine NIS, via exposure due to ballast water discharge (hereafter, ballast discharge) and biofouling. We developed a systematic statistical likelihood-based methodology to investigate port-level marine NIS propagule pressure from ballast discharge and biofouling exposure using a combination of techniques, namely k-Nearest-Neighbour and random forest algorithms. Vessel characteristics and travel patterns were assessed as candidate predictors. For the ballast discharge analysis, the predictors used for model building were vessel type, dead weight tonnage, and the port of first arrival; the predictors used for the biofouling analysis were days since last antifouling paint, mean vessel speed, dead weight tonnage, and hull niche area. Propagule pressure for both pathways was calculated at a voyage, port and annual level, which were used to establish the relative entry score for each port. The model was applied to a case study for New Zealand. Biosecurity New Zealand has commissioned targeted marine surveillance at selected ports since 2002 to enable early detection of newly arrived marine NIS (Marine High-Risk Site Surveillance, MHRSS). The reported methodology was used to compare contemporary entry likelihoods between New Zealand ports. The results suggested that Tauranga now receives the highest volume of discharged ballast water and has the second most biofouling exposure compared to all other New Zealand ports. Auckland was predicted to receive the highest biofouling mass and was ranked tenth for ballast discharge exposure. Lyttelton, Napier, and New Plymouth also had a high relative ranking for these two pathways. The outputs from this study will inform the refinement of the MHRSS programme, facilitating continued early detection and cost-effective management to support New Zealand’s wider marine biosecurity system. More generally, this paper develops an approach for using statistical models to estimate relative likelihoods of entry of marine NIS.
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17
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Deidda D, Denis-Bacelar AM, Fenwick AJ, Ferreira KM, Heetun W, Hutton BF, Robinson AP, Scuffham J, Thielemans K. Hybrid kernelised expectation maximisation for Bremsstrahlung SPECT reconstruction in SIRT with 90Y micro-spheres. EJNMMI Phys 2022; 9:25. [PMID: 35377085 PMCID: PMC8980141 DOI: 10.1186/s40658-022-00452-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2021] [Accepted: 03/16/2022] [Indexed: 11/16/2022] Open
Abstract
Background Selective internal radiation therapy with Yttrium-90 microspheres is an effective therapy for liver cancer and liver metastases. Yttrium-90 is mainly a high-energy beta particle emitter. These beta particles emit Bremsstrahlung radiation during their interaction with tissue making post-therapy imaging of the radioactivity distribution feasible. Nevertheless, image quality and quantification is difficult due to the continuous energy spectrum which makes resolution modelling, attenuation and scatter estimation challenging and therefore the dosimetry quantification is inaccurate. As a consequence a reconstruction algorithm able to improve resolution could be beneficial. Methods In this study, the hybrid kernelised expectation maximisation (HKEM) is used to improve resolution and contrast and reduce noise, in addition a modified HKEM called frozen HKEM (FHKEM) is investigated to further reduce noise. The iterative part of the FHKEM kernel was frozen at the 72nd sub-iteration. When using ordered subsets algorithms the data is divided in smaller subsets and the smallest algorithm iterative step is called sub-iteration. A NEMA phantom with spherical inserts was used for the optimisation and validation of the algorithm, and data from 5 patients treated with Selective internal radiation therapy were used as proof of clinical relevance of the method. Results The results suggest a maximum improvement of 56% for region of interest mean recovery coefficient at fixed coefficient of variation and better identification of the hot volumes in the NEMA phantom. Similar improvements were achieved with patient data, showing 47% mean value improvement over the gold standard used in hospitals. Conclusions Such quantitative improvements could facilitate improved dosimetry calculations with SPECT when treating patients with Selective internal radiation therapy, as well as provide a more visible position of the cancerous lesions in the liver.
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Affiliation(s)
- Daniel Deidda
- National Physical Laboratory, Teddington, UK. .,Institute of Nuclear Medicine, University College London, London, UK.
| | | | | | | | | | - Brian F Hutton
- Institute of Nuclear Medicine, University College London, London, UK
| | - Andrew P Robinson
- National Physical Laboratory, Teddington, UK.,Christie Medical Physics and Engineering (CMPE), The Christie NHS Foundation Trust, Manchester, UK.,The University of Manchester, Manchester, UK
| | - James Scuffham
- National Physical Laboratory, Teddington, UK.,Department of Medical Physics, Royal Surrey NHS Foundation Trust, Guildford, UK
| | - Kris Thielemans
- Institute of Nuclear Medicine, University College London, London, UK
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18
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Saccaggi DL, Wilson JRU, Robinson AP, Terblanche JS. Arthropods on imported plant products: Volumes predict general trends while contextual details enhance predictive power. Ecol Appl 2022; 32:e2554. [PMID: 35114041 DOI: 10.1002/eap.2554] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2021] [Revised: 10/20/2021] [Accepted: 10/27/2021] [Indexed: 06/14/2023]
Abstract
Agricultural biosecurity interventions are aimed at minimizing introductions of harmful non-native organisms to new areas via agricultural trade. To prioritize such interventions, historical data on interceptions have been used to elucidate which factors determine the likelihood that a particular import is carrying a harmful organism. Here we use an interception data set of arthropod contaminants recorded on plant imports arriving in South Africa from 2005 to 2019, comprising 13,566 samples inspected for arthropod contaminants, of which 4902 were positive for the presence of at least one arthropod. We tested 29 predictor variables that have previously been used to explain variation in rates of detection and three variables describing possible sources of additional variation and grouped these into six mutually exclusive "factor classes." We used boosted regression trees as a non-parametric stochastic machine-learning method to build models for each factor class and interactions between them. We explored the influence of these variables with data split either randomly or chronologically. While we identified some specific patterns that could be explained post-hoc by historical events, only inspected volumes were reliably correlated with detection of arthropod contaminants across the whole data set. However, inspected volumes could not predict future interceptions of arthropods, which instead relied on contextual factors such as country, crop or year of import. This suggests that, although certain factors may be important in certain circumstances or for particular crops or commodities, there is little general predictive power in the current data. Instead, an idiographic approach would be most beneficial in biosecurity to ascertain the details of why a particular pest arrived on a particular pathway and how it might move (and be stopped) in future.
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Affiliation(s)
- Davina L Saccaggi
- Department of Agriculture, Land Reform and Rural Development, Plant Health Diagnostic Services, Stellenbosch, South Africa
- Centre for Invasion Biology, Department of Conservation Ecology and Entomology, Faculty of AgriSciences, Stellenbosch University, Stellenbosch, South Africa
| | - John R U Wilson
- Centre for Invasion Biology, Department of Botany and Zoology, Stellenbosch University, Stellenbosch, South Africa
- South African National Biodiversity Institute, Kirstenbosch Research Centre, Cape Town, South Africa
| | - Andrew P Robinson
- Centre of Excellence for Biosecurity Risk Analysis, School of BioSciences, The University of Melbourne, Parkville, Victoria, Australia
| | - John S Terblanche
- Centre for Invasion Biology, Department of Conservation Ecology and Entomology, Faculty of AgriSciences, Stellenbosch University, Stellenbosch, South Africa
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19
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Robinson AP, McNeill MR. Biosecurity and post-arrival pathways in New Zealand: relating alien organism detections to tourism indicators. NB 2022. [DOI: 10.3897/neobiota.71.64618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Between-country tourism is established as a facilitator of the spread of invasive alien species; however, little attention has been paid to the question of whether tourism contributes to the arrival and subsequent dispersal of exotic organisms within national borders. To assess the strength of evidence that tourism is a driver for the accidental introducing and dispersal of exotic organisms, we sourced three national databases covering the years 2011 to 2017, namely international and domestic hotel guest nights and national population counts, along with records of exotic organism detections collected by the Ministry for Primary Industries, New Zealand’s government agency that oversees biosecurity. We fitted statistical models to assess the strength of the relationship between monthly exotic organism interception rate, guest nights and population, the latter as a baseline. The analysis showed that levels of incursion detection were significantly related to tourism records reflecting the travel of both international and domestic tourists, even when population was taken into account. There was also a significant positive statistical correlation between the levels of detection of exotic organisms and human population. The core take-home message is that a key indicator of within-country human population movement, namely the number of nights duration spent in specific accommodation, is statistically significantly correlated to the contemporaneous detection of exotic pests. We were unable to distinguish between the effects of international as opposed to domestic tourists. We conclude that this study provides evidence of impact of within-country movement upon the internal spread of exotic species, although important caveats need to be considered.
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Baker CM, Chades I, McVernon J, Robinson AP, Bondell H. Optimal allocation of PCR tests to minimise disease transmission through contact tracing and quarantine. Epidemics 2021; 37:100503. [PMID: 34610549 PMCID: PMC8463101 DOI: 10.1016/j.epidem.2021.100503] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Revised: 08/13/2021] [Accepted: 09/22/2021] [Indexed: 11/24/2022] Open
Abstract
PCR testing is a crucial capability for managing disease outbreaks, but it is also a limited resource and must be used carefully to ensure the information gain from testing is valuable. Testing has two broad uses for informing public health policy, namely to track epidemic dynamics and to reduce transmission by identifying and managing cases. In this work we develop a modelling framework to examine the effects of test allocation in an epidemic, with a focus on using testing to minimise transmission. Using the COVID-19 pandemic as an example, we examine how the number of tests conducted per day relates to reduction in disease transmission, in the context of logistical constraints on the testing system. We show that if daily testing is above the routine capacity of a testing system, which can cause delays, then those delays can undermine efforts to reduce transmission through contact tracing and quarantine. This work highlights that the two goals of aiming to reduce transmission and aiming to identify all cases are different, and it is possible that focusing on one may undermine achieving the other. To develop an effective strategy, the goals must be clear and performance metrics must match the goals of the testing strategy. If metrics do not match the objectives of the strategy, then those metrics may incentivise actions that undermine achieving the objectives.
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Affiliation(s)
- Christopher M Baker
- School of Mathematics and Statistics, The University of Melbourne, Melbourne, Australia; Melbourne Centre for Data Science, The University of Melbourne, Melbourne, Australia; Centre of Excellence for Biosecurity Risk Analysis, The University of Melbourne, Melbourne, Australia.
| | - Iadine Chades
- Land and Water, CSIRO, Ecosciences Precinct, Dutton Park, Queensland 4102, Australia
| | - Jodie McVernon
- Peter Doherty Institute for Infection and Immunity, The Royal Melbourne Hospital and The University of Melbourne, Australia; Melbourne School of Population and Global Health, University of Melbourne, Parkville, Victoria 3010, Australia; Murdoch Children's Research Institute, The Royal Children's Hospital, Melbourne, Australia
| | - Andrew P Robinson
- Centre of Excellence for Biosecurity Risk Analysis, The University of Melbourne, Melbourne, Australia
| | - Howard Bondell
- School of Mathematics and Statistics, The University of Melbourne, Melbourne, Australia; Melbourne Centre for Data Science, The University of Melbourne, Melbourne, Australia
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21
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Tran-Gia J, Denis-Bacelar AM, Ferreira KM, Robinson AP, Calvert N, Fenwick AJ, Finocchiaro D, Fioroni F, Grassi E, Heetun W, Jewitt SJ, Kotzassarlidou M, Ljungberg M, McGowan DR, Scott N, Scuffham J, Gleisner KS, Tipping J, Wevrett J, Lassmann M. A multicentre and multi-national evaluation of the accuracy of quantitative Lu-177 SPECT/CT imaging performed within the MRTDosimetry project. EJNMMI Phys 2021; 8:55. [PMID: 34297218 PMCID: PMC8302709 DOI: 10.1186/s40658-021-00397-0] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Accepted: 06/21/2021] [Indexed: 11/10/2022] Open
Abstract
PURPOSE Patient-specific dosimetry is required to ensure the safety of molecular radiotherapy and to predict response. Dosimetry involves several steps, the first of which is the determination of the activity of the radiopharmaceutical taken up by an organ/lesion over time. As uncertainties propagate along each of the subsequent steps (integration of the time-activity curve, absorbed dose calculation), establishing a reliable activity quantification is essential. The MRTDosimetry project was a European initiative to bring together expertise in metrology and nuclear medicine research, with one main goal of standardizing quantitative 177Lu SPECT/CT imaging based on a calibration protocol developed and tested in a multicentre inter-comparison. This study presents the setup and results of this comparison exercise. METHODS The inter-comparison included nine SPECT/CT systems. Each site performed a set of three measurements with the same setup (system, acquisition and reconstruction): (1) Determination of an image calibration for conversion from counts to activity concentration (large cylinder phantom), (2) determination of recovery coefficients for partial volume correction (IEC NEMA PET body phantom with sphere inserts), (3) validation of the established quantitative imaging setup using a 3D printed two-organ phantom (ICRP110-based kidney and spleen). In contrast to previous efforts, traceability of the activity measurement was required for each participant, and all participants were asked to calculate uncertainties for their SPECT-based activities. RESULTS Similar combinations of imaging system and reconstruction lead to similar image calibration factors. The activity ratio results of the anthropomorphic phantom validation demonstrate significant harmonization of quantitative imaging performance between the sites with all sites falling within one standard deviation of the mean values for all inserts. Activity recovery was underestimated for total kidney, spleen, and kidney cortex, while it was overestimated for the medulla. CONCLUSION This international comparison exercise demonstrates that harmonization of quantitative SPECT/CT is feasible when following very specific instructions of a dedicated calibration protocol, as developed within the MRTDosimetry project. While quantitative imaging performance demonstrates significant harmonization, an over- and underestimation of the activity recovery highlights the limitations of any partial volume correction in the presence of spill-in and spill-out between two adjacent volumes of interests.
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Affiliation(s)
- Johannes Tran-Gia
- Department of Nuclear Medicine, University of Würzburg, Oberdürrbacher Str. 6, 97080, Würzburg, Germany.
| | | | | | - Andrew P Robinson
- National Physical Laboratory, Teddington, UK
- Christie Medical Physics and Engineering (CMPE), The Christie NHS Foundation Trust, Manchester, UK
- The University of Manchester, Manchester, UK
| | - Nicholas Calvert
- Christie Medical Physics and Engineering (CMPE), The Christie NHS Foundation Trust, Manchester, UK
| | - Andrew J Fenwick
- National Physical Laboratory, Teddington, UK
- Cardiff University, Cardiff, UK
| | - Domenico Finocchiaro
- Medical Physics Unit, Azienda Unità Sanitaria Locale di Reggio Emilia-IRCCS, Reggio Emilia, Italy
- Department of Physics and Astronomy, University of Bologna, Bologna, Italy
| | - Federica Fioroni
- Medical Physics Unit, Azienda Unità Sanitaria Locale di Reggio Emilia-IRCCS, Reggio Emilia, Italy
| | - Elisa Grassi
- Medical Physics Unit, Azienda Unità Sanitaria Locale di Reggio Emilia-IRCCS, Reggio Emilia, Italy
| | | | - Stephanie J Jewitt
- Radiation Physics and Protection, Churchill Hospital, Oxford University Hospitals NHS Foundation Trust, Oxford, UK
| | - Maria Kotzassarlidou
- Nuclear Medicine Department, "THEAGENIO" Anticancer Hospital, Thessaloniki, Greece
| | | | - Daniel R McGowan
- Radiation Physics and Protection, Churchill Hospital, Oxford University Hospitals NHS Foundation Trust, Oxford, UK
- Department of Oncology, University of Oxford, Oxford, UK
| | - Nathaniel Scott
- Radiation Physics and Protection, Churchill Hospital, Oxford University Hospitals NHS Foundation Trust, Oxford, UK
| | - James Scuffham
- National Physical Laboratory, Teddington, UK
- Royal Surrey County Hospital, Guildford, UK
- Department of Physics, University of Surrey, Guildford, UK
| | | | - Jill Tipping
- Christie Medical Physics and Engineering (CMPE), The Christie NHS Foundation Trust, Manchester, UK
| | - Jill Wevrett
- National Physical Laboratory, Teddington, UK
- Royal Surrey County Hospital, Guildford, UK
- Department of Physics, University of Surrey, Guildford, UK
| | - Michael Lassmann
- Department of Nuclear Medicine, University of Würzburg, Oberdürrbacher Str. 6, 97080, Würzburg, Germany
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22
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Welsh MJ, Turner JA, Epanchin‐Niell RS, Monge JJ, Soliman T, Robinson AP, Kean JM, Phillips C, Stringer LD, Vereijssen J, Liebhold AM, Kompas T, Ormsby M, Brockerhoff EG. Approaches for estimating benefits and costs of interventions in plant biosecurity across invasion phases. Ecol Appl 2021; 31:e02319. [PMID: 33665918 PMCID: PMC8365635 DOI: 10.1002/eap.2319] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Revised: 10/14/2020] [Accepted: 12/06/2020] [Indexed: 06/12/2023]
Abstract
Nonnative plant pests cause billions of dollars in damages. It is critical to prevent or reduce these losses by intervening at various stages of the invasion process, including pathway risk management (to prevent pest arrival), surveillance and eradication (to counter establishment), and management of established pests (to limit damages). Quantifying benefits and costs of these interventions is important to justify and prioritize investments and to inform biosecurity policy. However, approaches for these estimations differ in (1) the assumed relationship between supply, demand, and prices, and (2) the ability to assess different types of direct and indirect costs at invasion stages, for a given arrival or establishment probability. Here we review economic approaches available to estimate benefits and costs of biosecurity interventions to inform the appropriate selection of approaches. In doing so, we complement previous studies and reviews on estimates of damages from invasive species by considering the influence of economic and methodological assumptions. Cost accounting is suitable for rapid decisions, specific impacts, and simple methodological assumptions but fails to account for feedbacks, such as market adjustments, and may overestimate long-term economic impacts. Partial equilibrium models consider changes in consumer and producer surplus due to pest impacts or interventions and can account for feedbacks in affected sectors but require specialized economic models, comprehensive data sets, and estimates of commodity supply and demand curves. More intensive computable general equilibrium models can account for feedbacks across entire economies, including capital and labor, and linkages among these. The two major considerations in choosing an approach are (1) the goals of the analysis (e.g., consideration of a single pest or intervention with a limited range of impacts vs. multiple interventions, pests or sectors), and (2) the resources available for analysis such as knowledge, budget and time.
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Affiliation(s)
- Melissa J. Welsh
- Scion (NZ Forest Research Institute)P.O. Box 29237Christchurch8540New Zealand
- Better Border BiosecurityPrivate Bag 4704Christchurch8140New Zealand
| | | | | | - Juan J. Monge
- Market Economics Ltd. Digital Basecamp1132 Hinemoa StreetRotorua3010New Zealand
| | - Tarek Soliman
- Manaaki Whenua – Landcare ResearchPrivate Bag 92170Auckland1142New Zealand
| | - Andrew P. Robinson
- Centre of Excellence for Biosecurity Risk AnalysisSchool of BioSciencesUniversity of MelbourneMelbourneVictoria3010Australia
| | - John M. Kean
- Better Border BiosecurityPrivate Bag 4704Christchurch8140New Zealand
- AgResearch, Ruakura10 Bisley RoadHamiltonNew Zealand
| | - Craig Phillips
- Better Border BiosecurityPrivate Bag 4704Christchurch8140New Zealand
- AgResearchPrivate Bag 4749Christchurch8140New Zealand
| | - Lloyd D. Stringer
- Better Border BiosecurityPrivate Bag 4704Christchurch8140New Zealand
- NZ Institute for Plant and Food ResearchPrivate Bag 4704Christchurch8140New Zealand
| | - Jessica Vereijssen
- Better Border BiosecurityPrivate Bag 4704Christchurch8140New Zealand
- NZ Institute for Plant and Food ResearchPrivate Bag 4704Christchurch8140New Zealand
| | - Andrew M. Liebhold
- USDA Forest Service Northern Research StationMorgantownWest Virginia26505USA
- Faculty of Forestry and Wood SciencesCzech University of Life SciencesPraha 6 – SuchdolCZ 165 21Czech Republic
| | - Tom Kompas
- Centre of Excellence for Biosecurity Risk AnalysisSchool of BioSciencesUniversity of MelbourneMelbourneVictoria3010Australia
- School of Ecosystem and Forest SciencesUniversity of MelbourneMelbourneVictoria3010Australia
| | - Michael Ormsby
- Ministry for Primary Industries147 Lambton QuayWellington6011New Zealand
| | - Eckehard G. Brockerhoff
- Scion (NZ Forest Research Institute)P.O. Box 29237Christchurch8540New Zealand
- Better Border BiosecurityPrivate Bag 4704Christchurch8140New Zealand
- Swiss Federal Research Institute WSLZürcherstrasse 111Birmensdorf8903Switzerland
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23
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Trouvé R, Robinson AP. Estimating Consignment-Level Infestation Rates from the Proportion of Consignment that Failed Border Inspection: Possibilities and Limitations in the Presence of Overdispersed Data. Risk Anal 2021; 41:992-1003. [PMID: 32940394 DOI: 10.1111/risa.13592] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Revised: 08/18/2020] [Accepted: 08/28/2020] [Indexed: 06/11/2023]
Abstract
Introduction of pests and diseases through trade is one of the main socioecological challenges worldwide. Targeted sampling at border security can efficiently provide information about biosecurity threats and also reduce pest entry risk. Prioritizing sampling effort requires knowing which pathways are most infested. However, border security inspection data are often right-censored, as inspection agencies often only report that a consignment has failed inspection (i.e., there was at least one unit infested), not how many infested units were found. A method has been proposed to estimate the mean infestation rate of a pathway from such right-censored data (Chen et al.). Using simulations and case study data from imported germplasm consignments inspected at the border, we show that the proposed method results in negatively biased estimates of the pathway infestation rate when the inspection data exhibit overdispersion (i.e., varying infestation rates among different consignments of the same pathway). The case study data also show that overdispersion is prevalent in real data sets. We demonstrate that the method proposed by Chen et al. recovers the median infestation rate of the pathway, rather than its mean. Therefore, it underpredicts the infestation rate when the data are overdispersed (in right-skewed distributions, the mean is above the median). To allow better monitoring and optimizing sampling effort at the border, we recommend that border protection agencies report all the data (the number of infested units found together with the sample size of the inspection) instead of only that the consignment failed inspection.
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Affiliation(s)
- Raphaël Trouvé
- CEBRA & School of Ecosystem and Forest Sciences, The University of Melbourne, Parkville, Victoria, Australia
| | - Andrew P Robinson
- CEBRA & School of Mathematics and Statistics, The University of Melbourne, Parkville, Victoria, Australia
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24
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Bloomfield NJ, Wei S, A Woodham B, Wilkinson P, Robinson AP. Automating the assessment of biofouling in images using expert agreement as a gold standard. Sci Rep 2021; 11:2739. [PMID: 33531525 PMCID: PMC7854599 DOI: 10.1038/s41598-021-81011-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2020] [Accepted: 12/23/2020] [Indexed: 11/30/2022] Open
Abstract
Biofouling is the accumulation of organisms on surfaces immersed in water. It is of particular concern to the international shipping industry because it increases fuel costs and presents a biosecurity risk by providing a pathway for non-indigenous marine species to establish in new areas. There is growing interest within jurisdictions to strengthen biofouling risk-management regulations, but it is expensive to conduct in-water inspections and assess the collected data to determine the biofouling state of vessel hulls. Machine learning is well suited to tackle the latter challenge, and here we apply deep learning to automate the classification of images from in-water inspections to identify the presence and severity of fouling. We combined several datasets to obtain over 10,000 images collected from in-water surveys which were annotated by a group biofouling experts. We compared the annotations from three experts on a 120-sample subset of these images, and found that they showed 89% agreement (95% CI: 87–92%). Subsequent labelling of the whole dataset by one of these experts achieved similar levels of agreement with this group of experts, which we defined as performing at most 5% worse (p \documentclass[12pt]{minimal}
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\begin{document}$$=$$\end{document}= 0.009–0.054). Using these expert labels, we were able to train a deep learning model that also agreed similarly with the group of experts (p \documentclass[12pt]{minimal}
\usepackage{amsmath}
\usepackage{wasysym}
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\begin{document}$$=$$\end{document}= 0.001–0.014), demonstrating that automated analysis of biofouling in images is feasible and effective using this method.
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Affiliation(s)
- Nathaniel J Bloomfield
- Centre of Excellence for Biosecurity Risk Analysis, The University of Melbourne, Melbourne, Australia.
| | - Susan Wei
- School of Mathematics and Statistics, The University of Melbourne, Melbourne, Australia
| | - Bartholomew A Woodham
- Biosecurity Animal Division, Department of Agriculture, Water and the Environment, Canberra, Australia
| | - Peter Wilkinson
- Biosecurity Animal Division, Department of Agriculture, Water and the Environment, Canberra, Australia
| | - Andrew P Robinson
- Centre of Excellence for Biosecurity Risk Analysis, The University of Melbourne, Melbourne, Australia
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25
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Titus HE, Chen Y, Podojil JR, Robinson AP, Balabanov R, Popko B, Miller SD. Pre-clinical and Clinical Implications of "Inside-Out" vs. "Outside-In" Paradigms in Multiple Sclerosis Etiopathogenesis. Front Cell Neurosci 2020; 14:599717. [PMID: 33192332 PMCID: PMC7654287 DOI: 10.3389/fncel.2020.599717] [Citation(s) in RCA: 41] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2020] [Accepted: 10/06/2020] [Indexed: 12/15/2022] Open
Abstract
Multiple Sclerosis (MS) is an immune-mediated neurological disorder, characterized by central nervous system (CNS) inflammation, oligodendrocyte loss, demyelination, and axonal degeneration. Although autoimmunity, inflammatory demyelination and neurodegeneration underlie MS, the initiating event has yet to be clarified. Effective disease modifying therapies need to both regulate the immune system and promote restoration of neuronal function, including remyelination. The challenge in developing an effective long-lived therapy for MS requires that three disease-associated targets be addressed: (1) self-tolerance must be re-established to specifically inhibit the underlying myelin-directed autoimmune pathogenic mechanisms; (2) neurons must be protected from inflammatory injury and degeneration; (3) myelin repair must be engendered by stimulating oligodendrocyte progenitors to remyelinate CNS neuronal axons. The combined use of chronic and relapsing remitting experimental autoimmune encephalomyelitis (C-EAE, R-EAE) (“outside-in”) as well as progressive diphtheria toxin A chain (DTA) and cuprizone autoimmune encephalitis (CAE) (“inside-out”) mouse models allow for the investigation and specific targeting of all three of these MS-associated disease parameters. The “outside-in” EAE models initiated by myelin-specific autoreactive CD4+ T cells allow for the evaluation of both myelin-specific tolerance in the absence or presence of neuroprotective and/or remyelinating agents. The “inside-out” mouse models of secondary inflammatory demyelination are triggered by toxin-induced oligodendrocyte loss or subtle myelin damage, which allows evaluation of novel therapeutics that could promote remyelination and neuroprotection in the CNS. Overall, utilizing these complementary pre-clinical MS models will open new avenues for developing therapeutic interventions, tackling MS from the “outside-in” and/or “inside-out”.
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Affiliation(s)
- Haley E Titus
- Department of Microbiology-Immunology, Northwestern University Feinberg School of Medicine, Chicago, IL, United States
| | - Yanan Chen
- Department of Neurology, Northwestern University Feinberg School of Medicine, Chicago, IL, United States
| | - Joseph R Podojil
- Department of Microbiology-Immunology, Northwestern University Feinberg School of Medicine, Chicago, IL, United States.,Cour Pharmaceutical Development Company, Inc., Northbrook, IL, United States
| | - Andrew P Robinson
- Department of Microbiology-Immunology, Northwestern University Feinberg School of Medicine, Chicago, IL, United States
| | - Roumen Balabanov
- Department of Neurology, Northwestern University Feinberg School of Medicine, Chicago, IL, United States
| | - Brian Popko
- Department of Neurology, Northwestern University Feinberg School of Medicine, Chicago, IL, United States
| | - Stephen D Miller
- Department of Microbiology-Immunology, Northwestern University Feinberg School of Medicine, Chicago, IL, United States.,Cour Pharmaceutical Development Company, Inc., Northbrook, IL, United States.,Interdepartmental Immunobiology Center, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States
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26
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Fenwick AJ, Collins SM, Evans WD, Ferreira KM, Paisey SJ, Robinson AP, Marshall C. Absolute standardisation and determination of the half-life and gamma emission intensities of 89Zr. Appl Radiat Isot 2020; 166:109294. [PMID: 32977243 DOI: 10.1016/j.apradiso.2020.109294] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2019] [Revised: 02/17/2020] [Accepted: 06/11/2020] [Indexed: 11/30/2022]
Abstract
An absolute standardisation of 89Zr was performed alongside determination of gamma emission intensities and half-life. The collected data were evaluated alongside complementary works from previous publications and new recommended nuclear data values are presented including a new evaluated T1/2 = 78.361(25) h and new absolute intensities for gamma transitions resulting from its decay to 89Y. Dial settings for commercially available radionuclide calibrators are also presented and show a relative difference of approximately 3% compared to previously published values.
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Affiliation(s)
- Andrew J Fenwick
- National Physical Laboratory, Hampton Road, Teddington, UK; Cardiff University, Cardiff, UK.
| | - Sean M Collins
- National Physical Laboratory, Hampton Road, Teddington, UK; The University of Surrey, Guildford, UK
| | - William D Evans
- Cardiff University, Cardiff, UK; Wales Research and Diagnostic Positron Emission Tomography Imaging Centre, School of Medicine, Cardiff University, Cardiff, UK
| | | | - Stephen J Paisey
- Cardiff University, Cardiff, UK; Wales Research and Diagnostic Positron Emission Tomography Imaging Centre, School of Medicine, Cardiff University, Cardiff, UK
| | - Andrew P Robinson
- National Physical Laboratory, Hampton Road, Teddington, UK; The University of Manchester, Manchester, UK; The Christie NHS Foundation Trust, Manchester, UK
| | - Christopher Marshall
- Cardiff University, Cardiff, UK; Wales Research and Diagnostic Positron Emission Tomography Imaging Centre, School of Medicine, Cardiff University, Cardiff, UK
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27
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Chauvin M, Borys D, Botta F, Bzowski P, Dabin J, Denis-Bacelar AM, Desbrée A, Falzone N, Lee BQ, Mairani A, Malaroda A, Mathieu G, McKay E, Mora-Ramirez E, Robinson AP, Sarrut D, Struelens L, Gil AV, Bardiès M. OpenDose: Open-Access Resource for Nuclear Medicine Dosimetry. J Nucl Med 2020; 61:1514-1519. [PMID: 32169912 DOI: 10.2967/jnumed.119.240366] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2019] [Accepted: 02/26/2020] [Indexed: 11/16/2022] Open
Abstract
Radiopharmaceutical dosimetry depends on the localization in space and time of radioactive sources and requires the estimation of the amount of energy emitted by the sources deposited within targets. In particular, when computing resources are not accessible, this task can be performed using precomputed tables of specific absorbed fractions (SAFs) or S values based on dosimetric models. The aim of the OpenDose collaboration is to generate and make freely available a range of dosimetric data and tools. Methods: OpenDose brings together resources and expertise from 18 international teams to produce and compare traceable dosimetric data using 6 of the most popular Monte Carlo codes in radiation transport (EGSnrc/EGS++, FLUKA, GATE, Geant4, MCNP/MCNPX, and PENELOPE). SAFs are uploaded, together with their associated statistical uncertainties, in a relational database. S values are then calculated from monoenergetic SAFs on the basis of the radioisotope decay data presented in International Commission on Radiological Protection Publication 107. Results: The OpenDose collaboration produced SAFs for all source region and target combinations of the 2 International Commission on Radiological Protection Publication 110 adult reference models. SAFs computed from the different Monte Carlo codes were in good agreement at all energies, with SDs below individual statistical uncertainties. Calculated S values were in good agreement with OLINDA/EXM 2.0 (commercial) and IDAC-Dose 2.1 (free) software. A dedicated website (www.opendose.org) has been developed to provide easy and open access to all data. Conclusion: The OpenDose website allows the display and downloading of SAFs and the corresponding S values for 1,252 radionuclides. The OpenDose collaboration, open to new research teams, will extend data production to other dosimetric models and implement new free features, such as online dosimetric tools and patient-specific absorbed dose calculation software, together with educational resources.
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Affiliation(s)
- Maxime Chauvin
- CRCT, UMR 1037, Inserm, Université Toulouse III Paul Sabatier, Toulouse, France
| | - Damian Borys
- Department of Systems Biology and Engineering, Silesian University of Technology, Gliwice, Poland
| | - Francesca Botta
- Medical Physics Unit, IEO, European Institute of Oncology IRCCS, Milan, Italy
| | - Pawel Bzowski
- Department of Systems Biology and Engineering, Silesian University of Technology, Gliwice, Poland
| | - Jérémie Dabin
- SCK-CEN, Belgian Nuclear Research Centre, Mol, Belgium
| | | | - Aurélie Desbrée
- Institut de Radioprotection et de Sûreté Nucléaire (IRSN), Fontenay-aux-Roses, France
| | - Nadia Falzone
- MRC Oxford Institute for Radiation Oncology, University of Oxford, Oxford, United, Kingdom.,GenesisCare, Sydney, New South Wales, Australia
| | - Boon Quan Lee
- MRC Oxford Institute for Radiation Oncology, University of Oxford, Oxford, United, Kingdom.,GenesisCare, Sydney, New South Wales, Australia
| | - Andrea Mairani
- Heidelberg Ion-Beam Therapy Center (HIT), Department of Radiation Oncology, Heidelberg University Hospital, Heidelberg, Germany.,Medical Physics, National Centre of Oncological Hadrontherapy (CNAO), Pavia, Italy
| | - Alessandra Malaroda
- School of Physics and CMRP, University of Wollongong, Wollongong, New South Wales, Australia.,Theranostic and Nuclear Medicine Department, St. Vincent's Public Hospital, Sydney, New South Wales, Australia
| | - Gilles Mathieu
- Département du Système d'Information, Inserm, Paris, France
| | - Erin McKay
- St. George Hospital, Sydney, New South Wales, Australia
| | - Erick Mora-Ramirez
- CRCT, UMR 1037, Inserm, Université Toulouse III Paul Sabatier, Toulouse, France.,CICANUM, Escuela de Física, Universidad de Costa Rica, San Jose, Costa Rica
| | - Andrew P Robinson
- National Physical Laboratory, Teddington, United Kingdom.,Schuster Laboratory, School of Physics and Astronomy, University of Manchester, Manchester, United Kingdom; and.,The Christie NHS Foundation Trust, Manchester, United Kingdom
| | | | | | - Alex Vergara Gil
- CRCT, UMR 1037, Inserm, Université Toulouse III Paul Sabatier, Toulouse, France
| | - Manuel Bardiès
- CRCT, UMR 1037, Inserm, Université Toulouse III Paul Sabatier, Toulouse, France
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Bobin C, Bouchard J, Chisté V, Collins SM, Dryák P, Fenwick A, Keightley J, Lépy MC, Lourenço V, Robinson AP, Sochorová J, Šolc J, Thiam C. Activity measurements and determination of nuclear decay data of 166Ho in the MRTDosimetry project. Appl Radiat Isot 2019; 153:108826. [PMID: 31525708 DOI: 10.1016/j.apradiso.2019.108826] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2019] [Revised: 07/23/2019] [Accepted: 07/26/2019] [Indexed: 11/19/2022]
Abstract
Holmium-166 is a high-energy β--emitter radionuclide (~ 1.8 MeV) with a short half-life (~26.8h) that offers great potential as an alternative to 90Y for the treatment of liver cancer based on radioembolization. The possibility of quantitative Single Photon Emission Computed Tomography (SPECT) imaging of the main γ-ray emission at 80.6 keV, in addition to strong paramagnetic properties suitable for Magnetic Resonance Imaging (MRI), complement this therapeutic potential. The present paper describes the measurements carried out in three European radionuclide metrology laboratories for primary standardization of 166Ho and new determinations of X- and γ-ray photon-emission intensities in the framework of the European EMPIR project MRTDosimetry. New half-life measurements were also performed.
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Affiliation(s)
- C Bobin
- CEA, LIST, Laboratoire National Henri Becquerel, (LNE-LNHB), 91191, Gif-sur-Yvette Cedex, France.
| | - J Bouchard
- CEA, LIST, Laboratoire National Henri Becquerel, (LNE-LNHB), 91191, Gif-sur-Yvette Cedex, France
| | - V Chisté
- CEA, LIST, Laboratoire National Henri Becquerel, (LNE-LNHB), 91191, Gif-sur-Yvette Cedex, France
| | - S M Collins
- National Physical Laboratory, Hampton Road, Teddington, Middlesex, TW11 0LW, United Kingdom
| | - P Dryák
- Czech Metrology Institute, Okruzni 31, 638 00, Brno, Czech Republic
| | - A Fenwick
- National Physical Laboratory, Hampton Road, Teddington, Middlesex, TW11 0LW, United Kingdom
| | - J Keightley
- National Physical Laboratory, Hampton Road, Teddington, Middlesex, TW11 0LW, United Kingdom
| | - M-C Lépy
- CEA, LIST, Laboratoire National Henri Becquerel, (LNE-LNHB), 91191, Gif-sur-Yvette Cedex, France
| | - V Lourenço
- CEA, LIST, Laboratoire National Henri Becquerel, (LNE-LNHB), 91191, Gif-sur-Yvette Cedex, France
| | - A P Robinson
- National Physical Laboratory, Hampton Road, Teddington, Middlesex, TW11 0LW, United Kingdom; University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom; Christie Medical Physics and Engineering (CMPE), The Christie NHS Foundation Trust, Wilmslow Road, M20 4BX, Manchester, United Kingdom
| | - J Sochorová
- Czech Metrology Institute, Okruzni 31, 638 00, Brno, Czech Republic
| | - J Šolc
- Czech Metrology Institute, Okruzni 31, 638 00, Brno, Czech Republic
| | - C Thiam
- CEA, LIST, Laboratoire National Henri Becquerel, (LNE-LNHB), 91191, Gif-sur-Yvette Cedex, France
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Johnson SJ, Hick PM, Robinson AP, Rimmer AE, Tweedie A, Becker JA. The impact of pooling samples on surveillance sensitivity for the megalocytivirus Infectious spleen and kidney necrosis virus. Transbound Emerg Dis 2019; 66:2318-2328. [PMID: 31286667 DOI: 10.1111/tbed.13288] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2019] [Revised: 05/25/2019] [Accepted: 06/27/2019] [Indexed: 01/16/2023]
Abstract
Movements of large volumes and species varieties make the ornamental fish industry a high-risk pathway for the transfer of aquatic pathogens to new geographical regions and naïve hosts, potentially resulting in emergency disease events. Infectious spleen and kidney necrosis virus (genus Megalocytivirus) is considered exotic to Australia despite documented incursions since 2003. There are current import controls requiring freedom from infection for entry to Australia. The objective was to evaluate the effect of tissue pooling strategies for qPCR testing using a SYBR® assay for freedom from ISKNV at 2% expected prevalence with 95% confidence. Tissue homogenates from apparently healthy imported ornamental fish were tested as individuals and in pools of 5 and 10. Analytical sensitivity of the qPCR assay was reduced by two orders of magnitude when the nucleic acid extraction process was accounted for by spiking the plasmid in fish tissues and compared with molecular grade water. Diagnostic sensitivity of the assay was substantially reduced when testing tissues in pools compared with individual testing. For Population 1 (66% positive for ISKNV with moderate viral loads), surveillance sensitivity was only achieved using individual testing. For Population 2 (100% positive ISKNV with high viral loads), surveillance sensitivity was achieved using 260 fish in pools of 10 for a total of 26 tests or 200 fish in pools of 5 for 40 tests. Surveillance sensitivity could be maximized even when there was a reduction in pooled diagnostic sensitivity compared with diagnostic sensitivity for individual fish by increasing the sample size. Pooled sensitivity was influenced by the prevalence and variable virus load among fish with subclinical infections. Pooled testing is highly effective when the prevalence is >10% which should be informed by prior knowledge or pooling can be used for a screening test to rapidly identify populations with high prevalence.
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Affiliation(s)
- Sophia J Johnson
- Faculty of Science, Sydney School of Veterinary Science, The University of Sydney, Camden, New South Wales, Australia
| | - Paul M Hick
- Faculty of Science, Sydney School of Veterinary Science, The University of Sydney, Camden, New South Wales, Australia
| | - Andrew P Robinson
- Centre of Excellence for Biosecurity Risk Analysis, School of BioSciences, University of Melbourne, Parkville, Victoria, Australia
| | - Anneke E Rimmer
- Faculty of Science, Sydney School of Veterinary Science, The University of Sydney, Camden, New South Wales, Australia
| | - Alison Tweedie
- Faculty of Science, Sydney School of Veterinary Science, The University of Sydney, Camden, New South Wales, Australia
| | - Joy A Becker
- Faculty of Science, Sydney School of Veterinary Science, The University of Sydney, Camden, New South Wales, Australia
- Faculty of Science, School of Life and Environmental Sciences, The University of Sydney, Camden, New South Wales, Australia
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Abstract
The identification of a lot, and the size of the random sample taken for plant products, is justified by appeal to International Standards for Phytosanitary Measures No. 31, “Methodologies for Sampling of Consignments”. ISPM 31 notes that “A lot to be sampled should be a number of units of a single commodity identifiable by its homogeneity [...]” and “Treating multiple commodities as a single lot for convenience may mean that statistical inferences cannot be drawn from the results of the sampling.”
However, consignments are frequently heterogeneous, either because the same commodities have multiple sources or because there are several different commodities. The ISPM 31 prescription creates a substantial burden on border inspection because it suggests that heterogeneous populations must be split into homogeneous sub-populations from which separate samples of nominal size must be taken.
We demonstrate that if consignments with known heterogeneity are treated as stratified populations and the random sample of units is allocated proportionally based on the number of units in each stratum, then the nominal sensitivity at the consignment level is achieved if our concern is the level of contamination in the entire consignment taken as a whole. We argue that unknown heterogeneity is no impediment to appropriate statistical inference. We conclude that the international standard is unnecessarily restrictive.
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31
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Price E, Robinson AP, Cullen DM, Tipping J, Calvert N, Hamilton D, Oldfield C, Page E, Pietras B, Smith A. Improving molecular radiotherapy dosimetry using anthropomorphic calibration. Phys Med 2019; 58:40-46. [PMID: 30824148 DOI: 10.1016/j.ejmp.2019.01.013] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/11/2018] [Revised: 12/10/2018] [Accepted: 01/17/2019] [Indexed: 11/17/2022] Open
Abstract
The optimised delivery of Molecular Radiotherapy requires individualised calculation of absorbed dose to both targeted lesions and neighbouring healthy tissue. To achieve this, accurate quantification of the activity distribution in the patient by external detection is vital. METHODS This work extends specific anatomy-related calibration to true organ shapes. A set of patient-specific 3D printed organ inserts based on a diagnostic CT scan was produced, comprising the liver, spleen and both kidneys. The inserts were used to calculate patient-specific calibration factors for 177Lu. These calibration factors were compared with previously reported calibration factors for corresponding organ models based on the Cristy and Eckerman phantom series and for a comparably sized sphere. Monte Carlo calculations of the patient-specific radiation dose were performed for comparison with current clinical dosimetry methods for these data. RESULTS Patient-specific calibration factors are shown to be dependent on the volume, shape and position of the organ containing activity with a corresponding impact on the calculation of the dose to the patient. The impact of organ morphology on calculated dose is reduced when the dominant contributor to dose is beta particles. This is due to the small range of beta particles in tissue. Overestimations of recovered activity and hence dose of up to 135% are observed. CONCLUSION For accurate quantification to be performed calibration factors accounting for organ size, shape and position must be used. Such quantification is vital if accurate, patient-specific dosimetry is to be achieved.
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Affiliation(s)
- Emlyn Price
- Schuster Laboratory, School of Physics and Astronomy, The University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom; Christie Medical Physics and Engineering (CMPE), The Christie NHS Foundation Trust, Wilmslow Road, Manchester M20 4BX, United Kingdom.
| | - Andrew P Robinson
- Schuster Laboratory, School of Physics and Astronomy, The University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom; National Physical Laboratory, Hampton Road, Teddington, Middlesex TW11 0LW, United Kingdom
| | - David M Cullen
- Schuster Laboratory, School of Physics and Astronomy, The University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Jill Tipping
- Christie Medical Physics and Engineering (CMPE), The Christie NHS Foundation Trust, Wilmslow Road, Manchester M20 4BX, United Kingdom
| | - Nick Calvert
- Christie Medical Physics and Engineering (CMPE), The Christie NHS Foundation Trust, Wilmslow Road, Manchester M20 4BX, United Kingdom
| | - David Hamilton
- Christie Medical Physics and Engineering (CMPE), The Christie NHS Foundation Trust, Wilmslow Road, Manchester M20 4BX, United Kingdom
| | - Christopher Oldfield
- Schuster Laboratory, School of Physics and Astronomy, The University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Emma Page
- Christie Medical Physics and Engineering (CMPE), The Christie NHS Foundation Trust, Wilmslow Road, Manchester M20 4BX, United Kingdom; Schuster Laboratory, School of Physics and Astronomy, The University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Ben Pietras
- Schuster Laboratory, School of Physics and Astronomy, The University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Andrew Smith
- Schuster Laboratory, School of Physics and Astronomy, The University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
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32
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Lane SE, Hollings T, Hayes KR, McEnnulty FR, Green M, Georgiades E, Robinson AP. Risk factors for fouling biomass: evidence from small vessels in Australia. Biofouling 2018; 34:1032-1045. [PMID: 30656979 DOI: 10.1080/08927014.2018.1536202] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Revised: 10/08/2018] [Accepted: 10/09/2018] [Indexed: 06/09/2023]
Abstract
Invasive non-indigenous species (NIS) are a threat to marine biodiversity and marine reliant industries. Recreational vessels are recognised as an important vector of NIS translocation, particularly domestically. This paper reports on a novel application of multilevel modelling and multiple imputation in order to quantify the relationship between biofouling biomass (wet weight) and the vessel-level characteristics of recreational and fishing vessels. It was found that the number of days since the vessel was last cleaned strongly related to the biofouling biomass, yet differed dependent on vessel type. Similarly, the median number of trips undertaken was related to the biofouling biomass, and varied according to the type of antifouling paint (AF) used. No relationship was found between vessel size and biofouling biomass per sample unit. To reduce the spread of NIS, vessel owners should use an AF paint suitable to their vessel's operational profile, and follow a maintenance schedule according to the paint manufacturer's specifications.
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Affiliation(s)
- Stephen E Lane
- a Centre of Excellence for Biosecurity Risk Analysis , The University of Melbourne , Parkville , Australia
| | - Tracey Hollings
- a Centre of Excellence for Biosecurity Risk Analysis , The University of Melbourne , Parkville , Australia
| | - Keith R Hayes
- b Data61 , Commonwealth Scientific and Industrial Research Organisation , Hobart , Australia
| | - Felicity R McEnnulty
- c Oceans and Atmosphere , Commonwealth Scientific and Industrial Research Organisation , Hobart , Australia
| | - Mark Green
- c Oceans and Atmosphere , Commonwealth Scientific and Industrial Research Organisation , Hobart , Australia
| | - Eugene Georgiades
- d Science and Risk Assessment Directorate, Ministry for Primary Industries , Wellington, New Zealand
| | - Andrew P Robinson
- a Centre of Excellence for Biosecurity Risk Analysis , The University of Melbourne , Parkville , Australia
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33
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Lane SE, Arthur AD, Aston C, Zhao S, Robinson AP. When Does Poor Governance Presage Biosecurity Risk? Risk Anal 2018; 38:653-665. [PMID: 28799660 DOI: 10.1111/risa.12873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Border inspection, and the challenge of deciding which of the tens of millions of consignments that arrive should be inspected, is a perennial problem for regulatory authorities. The objective of these inspections is to minimize the risk of contraband entering the country. As an example, for regulatory authorities in charge of biosecurity material, consignments of goods are classified before arrival according to their economic tariff number. This classification, perhaps along with other information, is used as a screening step to determine whether further biosecurity intervention, such as inspection, is necessary. Other information associated with consignments includes details such as the country of origin, supplier, and importer, for example. The choice of which consignments to inspect has typically been informed by historical records of intercepted material. Fortunately for regulators, interception is a rare event; however, this sparsity undermines the utility of historical records for deciding which containers to inspect. In this article, we report on an analysis that uses more detailed information to inform inspection. Using quarantine biosecurity as a case study, we create statistical profiles using generalized linear mixed models and compare different model specifications with historical information alone, demonstrating the utility of a statistical modeling approach. We also demonstrate some graphical model summaries that provide managers with insight into pathway governance.
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Affiliation(s)
- Stephen E Lane
- Centre of Excellence for Biosecurity Risk Analysis, University of Melbourne, Parkville, Victoria, Australia
| | - Anthony D Arthur
- Department of Agriculture and Water Resources, Canberra, Australian Capital Territory, Australia
| | - Christina Aston
- Department of Agriculture and Water Resources, Canberra, Australian Capital Territory, Australia
| | - Sam Zhao
- Department of Agriculture and Water Resources, Canberra, Australian Capital Territory, Australia
| | - Andrew P Robinson
- Department of Agriculture and Water Resources, Canberra, Australian Capital Territory, Australia
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34
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Xu D, Robinson AP, Ishii T, Duncan DS, Alden TD, Goings GE, Ifergan I, Podojil JR, Penaloza-MacMaster P, Kearney JA, Swanson GT, Miller SD, Koh S. Peripherally derived T regulatory and γδ T cells have opposing roles in the pathogenesis of intractable pediatric epilepsy. J Exp Med 2018; 215:1169-1186. [PMID: 29487082 PMCID: PMC5881465 DOI: 10.1084/jem.20171285] [Citation(s) in RCA: 66] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2017] [Revised: 11/08/2017] [Accepted: 01/26/2018] [Indexed: 12/14/2022] Open
Abstract
Xu et al. provide the first study in patients with intractable epilepsy showing a direct correlation between the phenotype, activation state, cytokine profiles, and ability to cause neuronal apoptosis of brain-infiltrating peripherally derived immune cells with seizure severity using an unbiased flow cytometric approach. The pathophysiology of drug-resistant pediatric epilepsy is unknown. Flow cytometric analysis of inflammatory leukocytes in resected brain tissues from 29 pediatric patients with genetic (focal cortical dysplasia) or acquired (encephalomalacia) epilepsy demonstrated significant brain infiltration of blood-borne inflammatory myeloid cells and memory CD4+ and CD8+ T cells. Significantly, proinflammatory (IL-17– and GM-CSF–producing) γδ T cells were concentrated in epileptogenic lesions, and their numbers positively correlated with disease severity. Conversely, numbers of regulatory T (T reg) cells inversely correlated with disease severity. Correspondingly, using the kainic acid model of status epilepticus, we show ameliorated seizure activity in both γδ T cell– and IL-17RA–deficient mice and in recipients of T reg cells, whereas T reg cell depletion heightened seizure severity. Moreover, both IL-17 and GM-CSF induced neuronal hyperexcitability in brain slice cultures. These studies support a major pathological role for peripherally derived innate and adaptive proinflammatory immune responses in the pathogenesis of intractable epilepsy and suggest testing of immunomodulatory therapies.
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Affiliation(s)
- Dan Xu
- Department of Microbiology-Immunology, Feinberg School of Medicine, Northwestern University, Chicago, IL.,Department of Interdepartmental Immunobiology Center, Feinberg School of Medicine, Northwestern University, Chicago, IL
| | - Andrew P Robinson
- Department of Microbiology-Immunology, Feinberg School of Medicine, Northwestern University, Chicago, IL.,Department of Interdepartmental Immunobiology Center, Feinberg School of Medicine, Northwestern University, Chicago, IL
| | - Toshiyuki Ishii
- Department of Pharmacology, Feinberg School of Medicine, Northwestern University, Chicago, IL.,Department of Physiology, Nippon Medical School, Tokyo, Japan
| | - D'Anne S Duncan
- Department of Microbiology-Immunology, Feinberg School of Medicine, Northwestern University, Chicago, IL.,Department of Interdepartmental Immunobiology Center, Feinberg School of Medicine, Northwestern University, Chicago, IL
| | - Tord D Alden
- Department of Pediatrics, Feinberg School of Medicine, Northwestern University, Chicago, IL
| | - Gwendolyn E Goings
- Department of Microbiology-Immunology, Feinberg School of Medicine, Northwestern University, Chicago, IL.,Department of Interdepartmental Immunobiology Center, Feinberg School of Medicine, Northwestern University, Chicago, IL
| | - Igal Ifergan
- Department of Microbiology-Immunology, Feinberg School of Medicine, Northwestern University, Chicago, IL.,Department of Interdepartmental Immunobiology Center, Feinberg School of Medicine, Northwestern University, Chicago, IL
| | - Joseph R Podojil
- Department of Microbiology-Immunology, Feinberg School of Medicine, Northwestern University, Chicago, IL.,Department of Interdepartmental Immunobiology Center, Feinberg School of Medicine, Northwestern University, Chicago, IL
| | - Pablo Penaloza-MacMaster
- Department of Microbiology-Immunology, Feinberg School of Medicine, Northwestern University, Chicago, IL.,Department of Interdepartmental Immunobiology Center, Feinberg School of Medicine, Northwestern University, Chicago, IL
| | - Jennifer A Kearney
- Department of Pharmacology, Feinberg School of Medicine, Northwestern University, Chicago, IL
| | - Geoffrey T Swanson
- Department of Pharmacology, Feinberg School of Medicine, Northwestern University, Chicago, IL
| | - Stephen D Miller
- Department of Microbiology-Immunology, Feinberg School of Medicine, Northwestern University, Chicago, IL .,Department of Interdepartmental Immunobiology Center, Feinberg School of Medicine, Northwestern University, Chicago, IL
| | - Sookyong Koh
- Department of Pediatrics, Feinberg School of Medicine, Northwestern University, Chicago, IL
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35
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Fenwick AJ, Wevrett JL, Ferreira KM, Denis-Bacelar AM, Robinson AP. Quantitative imaging, dosimetry and metrology; Where do National Metrology Institutes fit in? Appl Radiat Isot 2017; 134:74-78. [PMID: 29158037 DOI: 10.1016/j.apradiso.2017.11.014] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2017] [Revised: 11/09/2017] [Accepted: 11/10/2017] [Indexed: 12/17/2022]
Abstract
In External Beam Radiotherapy, National Metrology Institutes (NMIs) play a critical role in the delivery of accurate absorbed doses to patients undergoing treatment. In contrast for nuclear medicine the role of the NMI is less clear and although significant work has been done in order to establish links for activity measurement, the calculation of administered absorbed doses is not traceable in the same manner as EBRT. Over recent decades the use of novel radiolabelled pharmaceuticals has increased dramatically. The limitation of secondary complications due to radiation damage to non-target tissue has historically been achieved by the use of activity escalation studies during clinical trials and this in turn has led to a chronic under dosing of the majority of patients. This paper looks to address the difficulties in combining clinical everyday practice with the grand challenges laid out by national metrology institutes to improve measurement capability in all walks of life. In the life sciences it can often be difficult to find the correct balance between pure research and practical solutions to measurement problems, and this paper is a discussion regarding these difficulties and how some NMIs have chosen to tackle these issues. The necessity of establishing strong links to underlying standards in the field of quantitative nuclear medicine imaging is highlighted. The difficulties and successes of current methods for providing traceability in nuclear medicine are discussed.
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Affiliation(s)
- A J Fenwick
- National Physical Laboratory, Hampton Road, Teddington, UK; Cardiff University, Cardiff, UK.
| | - J L Wevrett
- National Physical Laboratory, Hampton Road, Teddington, UK; University of Surrey, Guildford, UK; Royal Surrey County Hospital, Guildford, UK
| | - K M Ferreira
- National Physical Laboratory, Hampton Road, Teddington, UK
| | | | - A P Robinson
- National Physical Laboratory, Hampton Road, Teddington, UK; The University of Manchester, Manchester, UK; The Christie NHS Foundation Trust, Manchester, UK
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36
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Chauvin M, Borys D, Botta F, Bzowski P, Coca Pérez MA, Cremonesi M, Dabin J, Denis-Bacelar AM, Desbrée A, Bitar ZE, Falzone N, Ferrer L, Franck D, Lanconelli N, Mairani A, Malaroda A, Matusik K, McKay E, Pacilio M, Pieter J, Robinson AP, Rodríguez JL, Struelens L, Torres Aroches LA, Gil AV, Bardiès M. Abstract ID: 155 OpenDose: A collaborative effort to produce reference dosimetric data with Monte Carlo simulation software. Phys Med 2017. [DOI: 10.1016/j.ejmp.2017.09.081] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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37
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McNeill MR, Phillips CB, Robinson AP, Aalders L, Richards N, Young S, Dowsett C, James T, Bell N. Defining the biosecurity risk posed by transported soil: Effects of storage time and environmental exposure on survival of soil biota. NB 2017. [DOI: 10.3897/neobiota.32.9784] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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38
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Robinson AP, Tipping J, Cullen DM, Hamilton D, Brown R, Flynn A, Oldfield C, Page E, Price E, Smith A, Snee R. Organ-specific SPECT activity calibration using 3D printed phantoms for molecular radiotherapy dosimetry. EJNMMI Phys 2016; 3:12. [PMID: 27411356 PMCID: PMC4943909 DOI: 10.1186/s40658-016-0148-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2015] [Accepted: 06/28/2016] [Indexed: 01/09/2023] Open
Abstract
Background Patient-specific absorbed dose calculations for molecular radiotherapy require accurate activity quantification. This is commonly derived from Single-Photon Emission Computed Tomography (SPECT) imaging using a calibration factor relating detected counts to known activity in a phantom insert. Methods A series of phantom inserts, based on the mathematical models underlying many clinical dosimetry calculations, have been produced using 3D printing techniques. SPECT/CT data for the phantom inserts has been used to calculate new organ-specific calibration factors for 99mTc and 177Lu. The measured calibration factors are compared to predicted values from calculations using a Gaussian kernel. Results Measured SPECT calibration factors for 3D printed organs display a clear dependence on organ shape for 99mTc and 177Lu. The observed variation in calibration factor is reproduced using Gaussian kernel-based calculation over two orders of magnitude change in insert volume for 99mTc and 177Lu. These new organ-specific calibration factors show a 24, 11 and 8 % reduction in absorbed dose for the liver, spleen and kidneys, respectively. Conclusions Non-spherical calibration factors from 3D printed phantom inserts can significantly improve the accuracy of whole organ activity quantification for molecular radiotherapy, providing a crucial step towards individualised activity quantification and patient-specific dosimetry. 3D printed inserts are found to provide a cost effective and efficient way for clinical centres to access more realistic phantom data.
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Affiliation(s)
- Andrew P Robinson
- Schuster Laboratory, School of Physics and Astronomy, The University of Manchester, Manchester, M13 9PL, UK.
| | - Jill Tipping
- Christie Medical Physics and Engineering (CMPE), The Christie NHS Foundation Trust, Wilmslow Road, Manchester, M20 4BX, UK
| | - David M Cullen
- Schuster Laboratory, School of Physics and Astronomy, The University of Manchester, Manchester, M13 9PL, UK
| | - David Hamilton
- Christie Medical Physics and Engineering (CMPE), The Christie NHS Foundation Trust, Wilmslow Road, Manchester, M20 4BX, UK
| | - Richard Brown
- Schuster Laboratory, School of Physics and Astronomy, The University of Manchester, Manchester, M13 9PL, UK
| | - Alex Flynn
- Schuster Laboratory, School of Physics and Astronomy, The University of Manchester, Manchester, M13 9PL, UK
| | - Christopher Oldfield
- Schuster Laboratory, School of Physics and Astronomy, The University of Manchester, Manchester, M13 9PL, UK
| | - Emma Page
- Schuster Laboratory, School of Physics and Astronomy, The University of Manchester, Manchester, M13 9PL, UK.,Christie Medical Physics and Engineering (CMPE), The Christie NHS Foundation Trust, Wilmslow Road, Manchester, M20 4BX, UK
| | - Emlyn Price
- Schuster Laboratory, School of Physics and Astronomy, The University of Manchester, Manchester, M13 9PL, UK
| | - Andrew Smith
- Schuster Laboratory, School of Physics and Astronomy, The University of Manchester, Manchester, M13 9PL, UK
| | - Richard Snee
- Schuster Laboratory, School of Physics and Astronomy, The University of Manchester, Manchester, M13 9PL, UK
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39
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Robinson AP, Tipping J, Cullen DM, Hamilton D. The influence of triple energy window scatter correction on activity quantification for1 7 7Lu molecular radiotherapy. Phys Med Biol 2016; 61:5107-27. [DOI: 10.1088/0031-9155/61/14/5107] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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40
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Ashdown ML, Robinson AP, Yatomi-Clarke SL, Ashdown ML, Allison A, Abbott D, Markovic SN, Coventry BJ. Chemotherapy for Late-Stage Cancer Patients: Meta-Analysis of Complete Response Rates. F1000Res 2015; 4:232. [PMID: 26834979 PMCID: PMC4706056 DOI: 10.12688/f1000research.6760.1] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 07/07/2015] [Indexed: 12/15/2022] Open
Abstract
Complete response (CR) rates reported for cytotoxic chemotherapy for late-stage cancer patients are generally low, with few exceptions, regardless of the solid cancer type or drug regimen. We investigated CR rates reported in the literature for clinical trials using chemotherapy alone, across a wide range of tumour types and chemotherapeutic regimens, to determine an overall CR rate for late-stage cancers. A total of 141 reports were located using the PubMed database. A meta-analysis was performed of reported CR from 68 chemotherapy trials (total 2732 patients) using standard agents across late-stage solid cancers—a binomial model with random effects was adopted. Mean CR rates were compared for different cancer types, and for chemotherapeutic agents with different mechanisms of action, using a logistic regression. Our results showed that the CR rates for chemotherapy treatment of late-stage cancer were generally low at 7.4%, regardless of the cancer type or drug regimen used. We found no evidence that CR rates differed between different chemotherapy drug types, but amongst different cancer types small CR differences were evident, although none exceeded a mean CR rate of 11%. This remarkable concordance of CR rates regardless of cancer or therapy type remains currently unexplained, and motivates further investigation.
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Affiliation(s)
- Martin L Ashdown
- Faculty of Medicine, University of Melbourne, Parkville, Victoria, Australia
| | - Andrew P Robinson
- Department of Mathematics and Statistics, University of Melbourne, Parkville, Victoria, Australia
| | | | | | - Andrew Allison
- Centre for Biomedical Engineering (CBME), University of Adelaide, South Australia, Australia; School of Electrical & Electronic Engineering, University of Adelaide, South Australia, Australia
| | - Derek Abbott
- Centre for Biomedical Engineering (CBME), University of Adelaide, South Australia, Australia; School of Electrical & Electronic Engineering, University of Adelaide, South Australia, Australia
| | | | - Brendon J Coventry
- Department of Surgery & Tumour Immunology Laboratory, University of Adelaide, South Australia, Australia; Breast, Endocrine & Surgical Oncology Unit, Royal Adelaide Hospital, South Australia, Australia
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Najm FJ, Madhavan M, Zaremba A, Shick E, Karl RT, Factor DC, Miller TE, Nevin ZS, Kantor C, Sargent A, Quick KL, Schlatzer DM, Tang H, Papoian R, Brimacombe KR, Shen M, Boxer MB, Jadhav A, Robinson AP, Podojil JR, Miller SD, Miller RH, Tesar PJ. Drug-based modulation of endogenous stem cells promotes functional remyelination in vivo. Nature 2015; 522:216-20. [PMID: 25896324 PMCID: PMC4528969 DOI: 10.1038/nature14335] [Citation(s) in RCA: 294] [Impact Index Per Article: 32.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2014] [Accepted: 02/18/2015] [Indexed: 12/18/2022]
Abstract
Multiple sclerosis (MS) involves an aberrant autoimmune response and progressive failure of remyelination in the central nervous system (CNS). Prevention of neural degeneration and subsequent disability requires remyelination through the generation of new oligodendrocytes, but current treatments exclusively target the immune system. Oligodendrocyte progenitor cells (OPCs) are stem cells in the CNS and the principal source of myelinating oligodendrocytes1. OPCs are abundant in demyelinated regions of MS patients, yet fail to differentiate, thereby representing a cellular target for pharmacological intervention2. To discover therapeutic compounds for enhancing myelination from endogenous OPCs, we screened a library of bioactive small molecules on mouse pluripotent epiblast stem cell (EpiSC)-derived OPCs3–5. We identified seven drugs that functioned at nanomolar doses to selectively enhance the generation of mature oligodendrocytes from OPCs in vitro. Two drugs, miconazole and clobetasol, were effective in promoting precocious myelination in organotypic cerebellar slice cultures, and in vivo in early postnatal mouse pups. Systemic delivery of each of the two drugs significantly increased the number of new oligodendrocytes and enhanced remyelination in a lysolecithin-induced mouse model of focal demyelination. Administering each of the two drugs at the peak of disease in the experimental autoimmune encephalomyelitis (EAE) mouse model of chronic progressive MS resulted in striking reversal of disease severity. Immune response assays showed that miconazole functioned directly as a remyelinating drug with no effect on the immune system, whereas clobetasol was a potent immunosuppressant as well as a remyelinating agent. Mechanistic studies showed that miconazole and clobetasol functioned in OPCs through mitogen-activated protein kinase (MAPK) and glucocorticoid receptor (GR) signaling, respectively. Furthermore, both drugs enhanced the generation of human oligodendrocytes from human OPCs in vitro. Collectively, our results provide a rationale for testing miconazole and clobetasol, or structurally-modified derivatives, to enhance remyelination in patients.
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Affiliation(s)
- Fadi J Najm
- Department of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106, USA
| | - Mayur Madhavan
- Department of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106, USA
| | - Anita Zaremba
- Department of Neurosciences, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106, USA
| | - Elizabeth Shick
- Department of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106, USA
| | - Robert T Karl
- Department of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106, USA
| | - Daniel C Factor
- Department of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106, USA
| | - Tyler E Miller
- 1] Department of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106, USA [2] Department of Pathology, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106, USA [3] Department of Stem Cell Biology and Regenerative Medicine, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio 44195, USA
| | - Zachary S Nevin
- Department of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106, USA
| | - Christopher Kantor
- Department of Neurosciences, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106, USA
| | - Alex Sargent
- Department of Neurosciences, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106, USA
| | - Kevin L Quick
- PerkinElmer, 940 Winter Street, Waltham, Massachusetts 02451, USA
| | - Daniela M Schlatzer
- Center for Proteomics and Bioinformatics, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106, USA
| | - Hong Tang
- Drug Discovery Center, University of Cincinnati College of Medicine, Cincinnati, Ohio 45237, USA
| | - Ruben Papoian
- Drug Discovery Center, University of Cincinnati College of Medicine, Cincinnati, Ohio 45237, USA
| | - Kyle R Brimacombe
- National Center for Advancing Translational Sciences, National Institutes of Health, 9800 Medical Center Drive, Rockville, Maryland 20850, USA
| | - Min Shen
- National Center for Advancing Translational Sciences, National Institutes of Health, 9800 Medical Center Drive, Rockville, Maryland 20850, USA
| | - Matthew B Boxer
- National Center for Advancing Translational Sciences, National Institutes of Health, 9800 Medical Center Drive, Rockville, Maryland 20850, USA
| | - Ajit Jadhav
- National Center for Advancing Translational Sciences, National Institutes of Health, 9800 Medical Center Drive, Rockville, Maryland 20850, USA
| | - Andrew P Robinson
- Department of Microbiology-Immunology and Interdepartmental Immunobiology Center, Feinberg School of Medicine, Northwestern University, 303 E. Chicago Avenue, Chicago, Illinois 60611, USA
| | - Joseph R Podojil
- Department of Microbiology-Immunology and Interdepartmental Immunobiology Center, Feinberg School of Medicine, Northwestern University, 303 E. Chicago Avenue, Chicago, Illinois 60611, USA
| | - Stephen D Miller
- Department of Microbiology-Immunology and Interdepartmental Immunobiology Center, Feinberg School of Medicine, Northwestern University, 303 E. Chicago Avenue, Chicago, Illinois 60611, USA
| | - Robert H Miller
- Department of Neurosciences, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106, USA
| | - Paul J Tesar
- 1] Department of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106, USA [2] Department of Neurosciences, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106, USA
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Rodgers JM, Robinson AP, Rosler ES, Lariosa-Willingham K, Persons RE, Dugas JC, Miller SD. IL-17A activates ERK1/2 and enhances differentiation of oligodendrocyte progenitor cells. Glia 2014; 63:768-79. [PMID: 25557204 DOI: 10.1002/glia.22783] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2014] [Accepted: 12/15/2014] [Indexed: 01/05/2023]
Abstract
Inflammatory signals present in demyelinated multiple sclerosis lesions affect the reparative remyelination process conducted by oligodendrocyte progenitor cells (OPCs). Interferon-γ (IFN-γ), tumor necrosis factor-α (TNF-α), and interleukin (IL)-6 have differing effects on the viability and growth of OPCs, however the effects of IL-17A are largely unknown. Primary murine OPCs were stimulated with IL-17A and their viability, proliferation, and maturation were assessed in culture. IL-17A-stimulated OPCs exited the cell cycle and differentiated with no loss in viability. Expression of the myelin-specific protein, proteolipid protein, increased in a cerebellar slice culture assay in the presence of IL-17A. Downstream, IL-17A activated ERK1/2 within 15 min and induced chemokine expression in 2 days. These results demonstrate that IL-17A exposure stimulates OPCs to mature and participate in the inflammatory response.
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Affiliation(s)
- Jane M Rodgers
- Department of Microbiology-Immunology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, 60611; Interdepartmental Immunobiology Center, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, 60611
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Robinson AP, Rodgers JM, Goings GE, Miller SD. Characterizing oligodendrocyte lineage cell function by flow cytometry in animal models of demyelination. J Neuroimmunol 2014. [DOI: 10.1016/j.jneuroim.2014.08.505] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Robinson AP, Rodgers JM, Goings GE, Miller SD. Characterization of oligodendroglial populations in mouse demyelinating disease using flow cytometry: clues for MS pathogenesis. PLoS One 2014; 9:e107649. [PMID: 25247590 PMCID: PMC4172589 DOI: 10.1371/journal.pone.0107649] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2014] [Accepted: 08/22/2014] [Indexed: 11/24/2022] Open
Abstract
Characterizing and enumerating cells of the oligodendrocyte lineage (OLCs) is crucial for understanding demyelination and therapeutic benefit in models of demyelinating disease in the central nervous system. Here we describe a novel method for the rapid, unbiased analysis of mouse OLCs using flow cytometry. The assay was optimized to maximize viable yield of OLCs and maintain OLC antigen integrity. Panels of antibodies were assembled for simultaneous analysis of seven antigens on individual cells allowing for characterization of oligodendroglial cells throughout the lineage. We verified the utility of the assay with cultured OLCs and through a time course of developmental myelination. Next we employed the assay to characterize OLC populations in two well-characterized models of demyelination: cuprizone-induced demyelination and experimental autoimmune encephalomyelitis (EAE). In EAE we observed a dramatic loss of mature oligodendrocytes coincident with a dramatic expansion of oligodendrocyte progenitors cells (OPCs) at the onset of disease suggesting an attempt of the host to repair myelin. This expanded OPC pool was maintained through remission and relapse suggesting an arrest in differentiation in the face of the chronic autoimmune T cell-mediated inflammatory response. These robust, reproducible changes in OLCs through disease provide a rapid quantitative global analysis of myelin-producing cells in the adult mouse brain and important information regarding effects of disease on oligodendroglial proliferation/differentiation which is useful for defining the pathogenesis and therapy of MS.
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Affiliation(s)
- Andrew P. Robinson
- Department of Microbiology-Immunology, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States of America
- Interdepartmental Immunobiology Center, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States of America
| | - Jane M. Rodgers
- Department of Microbiology-Immunology, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States of America
- Interdepartmental Immunobiology Center, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States of America
| | - Gwendolyn E. Goings
- Department of Microbiology-Immunology, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States of America
- Interdepartmental Immunobiology Center, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States of America
| | - Stephen D. Miller
- Department of Microbiology-Immunology, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States of America
- Interdepartmental Immunobiology Center, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States of America
- * E-mail:
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Bree N, Wrzosek-Lipska K, Petts A, Andreyev A, Bastin B, Bender M, Blazhev A, Bruyneel B, Butler PA, Butterworth J, Carpenter MP, Cederkäll J, Clément E, Cocolios TE, Deacon A, Diriken J, Ekström A, Fitzpatrick C, Fraile LM, Fransen C, Freeman SJ, Gaffney LP, García-Ramos JE, Geibel K, Gernhäuser R, Grahn T, Guttormsen M, Hadinia B, Hadyńska-Kle K K, Hass M, Heenen PH, Herzberg RD, Hess H, Heyde K, Huyse M, Ivanov O, Jenkins DG, Julin R, Kesteloot N, Kröll T, Krücken R, Larsen AC, Lutter R, Marley P, Napiorkowski PJ, Orlandi R, Page RD, Pakarinen J, Patronis N, Peura PJ, Piselli E, Rahkila P, Rapisarda E, Reiter P, Robinson AP, Scheck M, Siem S, Singh Chakkal K, Smith JF, Srebrny J, Stefanescu I, Tveten GM, Van Duppen P, Van de Walle J, Voulot D, Warr N, Wenander F, Wiens A, Wood JL, Zielińska M. Shape coexistence in the neutron-deficient even-even (182-188)Hg isotopes studied via coulomb excitation. Phys Rev Lett 2014; 112:162701. [PMID: 24815644 DOI: 10.1103/physrevlett.112.162701] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2013] [Indexed: 06/03/2023]
Abstract
Coulomb-excitation experiments to study electromagnetic properties of radioactive even-even Hg isotopes were performed with 2.85 MeV/nucleon mercury beams from REX-ISOLDE. Magnitudes and relative signs of the reduced E2 matrix elements that couple the ground state and low-lying excited states in Hg182-188 were extracted. Information on the deformation of the ground and the first excited 0+ states was deduced using the quadrupole sum rules approach. Results show that the ground state is slightly deformed and of oblate nature, while a larger deformation for the excited 0+ state was noted in Hg182,184. The results are compared to beyond mean field and interacting-boson based models and interpreted within a two-state mixing model. Partial agreement with the model calculations was obtained. The presence of two different structures in the light even-mass mercury isotopes that coexist at low excitation energy is firmly established.
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Affiliation(s)
- N Bree
- KU Leuven, Instituut voor Kern- en Stralingsfysica, B-3001 Leuven, Belgium
| | - K Wrzosek-Lipska
- KU Leuven, Instituut voor Kern- en Stralingsfysica, B-3001 Leuven, Belgium and Heavy Ion Laboratory, University of Warsaw, PL-02-093 Warsaw, Poland
| | - A Petts
- Oliver Lodge Laboratory, University of Liverpool, Liverpool L69 7ZE, United Kingdom
| | - A Andreyev
- KU Leuven, Instituut voor Kern- en Stralingsfysica, B-3001 Leuven, Belgium and Department of Physics, University of York, York YO10 5DD, United Kingdom
| | - B Bastin
- KU Leuven, Instituut voor Kern- en Stralingsfysica, B-3001 Leuven, Belgium and GANIL CEA/DSM-CNRS/IN2P3, Boulevard H. Becquerel, F-14076 Caen, France
| | - M Bender
- Université Bordeaux, Centre d'Etudes Nucléaires de Bordeaux Gradignan, UMR5797, F-33175 Gradignan, France and CNRS/IN2P3, Centre d'Etudes Nucléaires de Bordeaux Gradignan, UMR5797, F-33175 Gradignan, France
| | - A Blazhev
- Institut für Kernphysik, Universität zu Köln, 50937 Köln, Germany
| | - B Bruyneel
- Institut für Kernphysik, Universität zu Köln, 50937 Köln, Germany
| | - P A Butler
- Oliver Lodge Laboratory, University of Liverpool, Liverpool L69 7ZE, United Kingdom
| | - J Butterworth
- Department of Physics, University of York, York YO10 5DD, United Kingdom
| | - M P Carpenter
- Physics Division, Argonne National Laboratory, Argonne, Illinois 60439, USA
| | - J Cederkäll
- Physics Department, University of Lund, Box 118, SE-221 00 Lund, Sweden and ISOLDE, CERN, CH-1211 Geneva 23, Switzerland
| | - E Clément
- GANIL CEA/DSM-CNRS/IN2P3, Boulevard H. Becquerel, F-14076 Caen, France and ISOLDE, CERN, CH-1211 Geneva 23, Switzerland
| | - T E Cocolios
- KU Leuven, Instituut voor Kern- en Stralingsfysica, B-3001 Leuven, Belgium and ISOLDE, CERN, CH-1211 Geneva 23, Switzerland and School of Physics and Astronomy, University of Manchester, Manchester M13 9PL, United Kingdom
| | - A Deacon
- School of Physics and Astronomy, University of Manchester, Manchester M13 9PL, United Kingdom
| | - J Diriken
- KU Leuven, Instituut voor Kern- en Stralingsfysica, B-3001 Leuven, Belgium and Belgian Nuclear Research Centre SCK CEN, B-2400 Mol, Belgium
| | - A Ekström
- Physics Department, University of Lund, Box 118, SE-221 00 Lund, Sweden
| | - C Fitzpatrick
- School of Physics and Astronomy, University of Manchester, Manchester M13 9PL, United Kingdom
| | - L M Fraile
- ISOLDE, CERN, CH-1211 Geneva 23, Switzerland and Grupo de Física Nuclear, Universidad Complutense de Madrit, 28040 Madrid, Spain
| | - Ch Fransen
- Institut für Kernphysik, Universität zu Köln, 50937 Köln, Germany
| | - S J Freeman
- School of Physics and Astronomy, University of Manchester, Manchester M13 9PL, United Kingdom
| | - L P Gaffney
- KU Leuven, Instituut voor Kern- en Stralingsfysica, B-3001 Leuven, Belgium and Oliver Lodge Laboratory, University of Liverpool, Liverpool L69 7ZE, United Kingdom
| | - J E García-Ramos
- Departamento de Física Aplicada, Universidad de Huelva, 21071 Huelva, Spain
| | - K Geibel
- Institut für Kernphysik, Universität zu Köln, 50937 Köln, Germany
| | - R Gernhäuser
- Physics Department E12, Technische Universität München, D-85748 Garching, Germany
| | - T Grahn
- Department of Physics, University of Jyväskylä, P.O. Box 35, FI-40014 Jyväskylä, Finland and Helsinki Institute of Physics, University of Helsinki, P.O. Box 64, FIN-00014 Helsinki, Finland
| | - M Guttormsen
- Department of Physics, University of Oslo, N-0316 Oslo, Norway
| | - B Hadinia
- School of Engineering, University of the West of Scotland, Paisley PA1 2BE, United Kingdom and Department of Physics, University of Guelph, Guelph, Ontario N1G 2W1, Canada
| | - K Hadyńska-Kle K
- Heavy Ion Laboratory, University of Warsaw, PL-02-093 Warsaw, Poland
| | - M Hass
- Department of Particle Physics, Weizmann Institute of Science, Rehovot 76100, Israel
| | - P-H Heenen
- Physique Nucléaire Théorique, Université Libre de Bruxelles, B-1050 Bruxelles, Belgium
| | - R-D Herzberg
- Oliver Lodge Laboratory, University of Liverpool, Liverpool L69 7ZE, United Kingdom
| | - H Hess
- Institut für Kernphysik, Universität zu Köln, 50937 Köln, Germany
| | - K Heyde
- Department of Physics and Astronomy, Ghent University, B-9000 Gent, Belgium
| | - M Huyse
- KU Leuven, Instituut voor Kern- en Stralingsfysica, B-3001 Leuven, Belgium
| | - O Ivanov
- KU Leuven, Instituut voor Kern- en Stralingsfysica, B-3001 Leuven, Belgium
| | - D G Jenkins
- Department of Physics, University of York, York YO10 5DD, United Kingdom
| | - R Julin
- Department of Physics, University of Jyväskylä, P.O. Box 35, FI-40014 Jyväskylä, Finland
| | - N Kesteloot
- KU Leuven, Instituut voor Kern- en Stralingsfysica, B-3001 Leuven, Belgium and Belgian Nuclear Research Centre SCK CEN, B-2400 Mol, Belgium
| | - Th Kröll
- Institut für Kernphysik, Technische Universität Darmstadt, D-64289 Darmstadt, Germany
| | - R Krücken
- Physics Department E12, Technische Universität München, D-85748 Garching, Germany
| | - A C Larsen
- Department of Physics, University of Oslo, N-0316 Oslo, Norway
| | - R Lutter
- Department of Physics, Ludwig Maximilian Universität München, 85748 Garching, Germany
| | - P Marley
- Department of Physics, University of York, York YO10 5DD, United Kingdom
| | - P J Napiorkowski
- Heavy Ion Laboratory, University of Warsaw, PL-02-093 Warsaw, Poland
| | - R Orlandi
- KU Leuven, Instituut voor Kern- en Stralingsfysica, B-3001 Leuven, Belgium and School of Engineering, University of the West of Scotland, Paisley PA1 2BE, United Kingdom
| | - R D Page
- Oliver Lodge Laboratory, University of Liverpool, Liverpool L69 7ZE, United Kingdom
| | - J Pakarinen
- Department of Physics, University of Jyväskylä, P.O. Box 35, FI-40014 Jyväskylä, Finland and Helsinki Institute of Physics, University of Helsinki, P.O. Box 64, FIN-00014 Helsinki, Finland
| | - N Patronis
- KU Leuven, Instituut voor Kern- en Stralingsfysica, B-3001 Leuven, Belgium and Department of Physics, The University of Ioannina, GR-45110 Ioannina, Greece
| | - P J Peura
- Department of Physics, University of Jyväskylä, P.O. Box 35, FI-40014 Jyväskylä, Finland
| | - E Piselli
- ISOLDE, CERN, CH-1211 Geneva 23, Switzerland
| | - P Rahkila
- Department of Physics, University of Jyväskylä, P.O. Box 35, FI-40014 Jyväskylä, Finland
| | - E Rapisarda
- ISOLDE, CERN, CH-1211 Geneva 23, Switzerland
| | - P Reiter
- Institut für Kernphysik, Universität zu Köln, 50937 Köln, Germany
| | - A P Robinson
- Department of Physics, University of York, York YO10 5DD, United Kingdom and School of Physics and Astronomy, University of Manchester, Manchester M13 9PL, United Kingdom
| | - M Scheck
- Oliver Lodge Laboratory, University of Liverpool, Liverpool L69 7ZE, United Kingdom and School of Engineering, University of the West of Scotland, Paisley PA1 2BE, United Kingdom and SUPA, Scottisch Universities Physics Alliance, Glasgow G12 8QQ, United Kingdom
| | - S Siem
- Department of Physics, University of Oslo, N-0316 Oslo, Norway
| | - K Singh Chakkal
- Department of Particle Physics, Weizmann Institute of Science, Rehovot 76100, Israel
| | - J F Smith
- School of Engineering, University of the West of Scotland, Paisley PA1 2BE, United Kingdom
| | - J Srebrny
- Heavy Ion Laboratory, University of Warsaw, PL-02-093 Warsaw, Poland
| | - I Stefanescu
- KU Leuven, Instituut voor Kern- en Stralingsfysica, B-3001 Leuven, Belgium and Physics Department E12, Technische Universität München, D-85748 Garching, Germany
| | - G M Tveten
- Department of Physics, University of Oslo, N-0316 Oslo, Norway
| | - P Van Duppen
- KU Leuven, Instituut voor Kern- en Stralingsfysica, B-3001 Leuven, Belgium
| | | | - D Voulot
- ISOLDE, CERN, CH-1211 Geneva 23, Switzerland
| | - N Warr
- Institut für Kernphysik, Universität zu Köln, 50937 Köln, Germany
| | - F Wenander
- ISOLDE, CERN, CH-1211 Geneva 23, Switzerland
| | - A Wiens
- Institut für Kernphysik, Universität zu Köln, 50937 Köln, Germany
| | - J L Wood
- School of Physics, Georgia Institute of Technology, Atlanta, Georgia 30332-0430, USA
| | - M Zielińska
- Heavy Ion Laboratory, University of Warsaw, PL-02-093 Warsaw, Poland and IRFU/SPhN, CEA Saclay, F-91191 Gif-sur-Yvette, France
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Karavarsamis N, Robinson AP, Hepworth G, Hamilton AJ, Heard GW. Comparison of Four Bootstrap-Based Interval Estimators of Species Occupancy and Detection Probabilities. AUST NZ J STAT 2013. [DOI: 10.1111/anzs.12044] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Natalie Karavarsamis
- Department of Mathematics and Statistics; The University of Melbourne; Parkville Victoria 3010 Australia
| | - Andrew P. Robinson
- Department of Mathematics and Statistics; The University of Melbourne; Parkville Victoria 3010 Australia
- Centre of Excellence for Biosecurity Risk Analysis; The University of Melbourne; Parkville Victoria 3010 Australia
| | - Graham Hepworth
- Department of Mathematics and Statistics; The University of Melbourne; Parkville Victoria 3010 Australia
| | - Andrew J. Hamilton
- Department of Agriculture and Food Systems; The University of Melbourne; Dookie College; Victoria 3647 Australia
| | - Geoffrey W. Heard
- Department of Botany; The University of Melbourne; Parkville Victoria 3010 Australia
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Rodgers JM, Robinson AP, Miller SD. Strategies for protecting oligodendrocytes and enhancing remyelination in multiple sclerosis. Discov Med 2013; 16:53-63. [PMID: 23911232 PMCID: PMC3970909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Multiple sclerosis (MS) is a chronic inflammatory demyelinating disease of the central nervous system (CNS) characterized by encephalitogenic leukocyte infiltration and multifocal plaques of demyelination. Patients present with debilitating clinical sequelae including motor, sensory, and cognitive deficits. For the past 30 years, immune modulating treatments have entered the marketplace and continue to improve in limiting the frequency and severity of relapses, but no cure has been found and no drug has successfully stopped chronic progressive disease. Recent work focusing on the oligodendrocyte, the myelin-producing cell, has provided needed insight into the process of demyelination, the spontaneous ability of the CNS to regenerate, and the inevitable failure of remyelination. From this a number of promising molecular targets have been identified to protect oligodendrocytes and promote remyelination. Combining immunomodulatory therapy with strategies to protect oligodendrocytes from further degeneration and enhance remyelination presents a very real means to improve clinical outcome for chronic progressive patients in the near future. Here we lay out a combination therapy approach to treating MS and survey the current literature on promising drug candidates potentially capable of mediating oligodendrocyte protection and enhancing remyelination.
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Affiliation(s)
- Jane M Rodgers
- Department of Microbiology-Immunology and Interdepartmental Immunobiology Center, Northwestern University Feinberg School of Medicine, 303 E. Chicago Ave., Chicago, Illinois 60611, USA
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Robinson AP, Caldis MW, Harp CT, Goings GE, Miller SD. High-mobility group box 1 protein (HMGB1) neutralization ameliorates experimental autoimmune encephalomyelitis. J Autoimmun 2013; 43:32-43. [PMID: 23514872 DOI: 10.1016/j.jaut.2013.02.005] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2012] [Revised: 02/19/2013] [Accepted: 02/21/2013] [Indexed: 01/10/2023]
Abstract
Multiple sclerosis (MS) is an autoimmune, demyelinating disease and as such, the gold standard of treatment is to selectively suppress the pathogenic autoimmune response without compromising the entire arm of the adaptive immune response. One target of this strategy lying upstream of the pathologic adaptive immune response is the local, innate immune signaling that initiates and drives autoimmunity and sterile injury. High-mobility group box 1 protein (HMGB1) is a ubiquitous nuclear protein that when released from necrotic cells, such as damaged oligodendrocytes in MS lesions, drives pro-inflammatory responses. Here we demonstrate that HMGB1 drives neuroinflammatory responses in experimental autoimmune encephalomyelitis (EAE), a murine model for MS, and that inhibition of HMGB1 signaling ameliorates disease. Specifically i.v. injection of an HMGB1 neutralizing antibody in the C57BL/6 model of chronic EAE or SJL/J model of relapsing-remitting EAE ameliorated clinical disease prophylactically or during ongoing disease, blocked T cell infiltration of the central nervous system, and inhibited systemic CD4(+) T cell responses to myelin epitopes. Additionally, lymphocytes from EAE mice restimulated in vitro in the presence of recombinant HMGB1 exhibited increased proliferation and pro-inflammatory cytokine production, an effect that was blocked by anti-HMGB1 antibody. Similarly recombinant HMGB1 promoted proliferation and pro-inflammatory cytokine production of human peripheral blood mononuclear cells stimulated in vitro, and anti-HMGB1 antibody blocked this effect. These findings indicate that HMGB1 contributes to neuroinflammatory responses that drive EAE pathogenesis and that HMGB1 blockade may be a novel means to selectively disrupt the pro-inflammatory loop that drives MS autoimmunity.
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Affiliation(s)
- Andrew P Robinson
- Department of Microbiology-Immunology, Feinberg School of Medicine, Northwestern University, 303 E. Chicago Avenue, Chicago, IL 60611, USA.
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Affiliation(s)
- Geoffrey Decrouez
- Department of Mathematics and Statistics; University of Melbourne; Parkville; VIC 3010; Australia
| | - Andrew P. Robinson
- ACERA and Department of Mathematics and Statistics; ACERA; Parkville; VIC 3010; Australia
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Leites LP, Robinson AP, Rehfeldt GE, Marshall JD, Crookston NL. Height-growth response to climatic changes differs among populations of Douglas-fir: a novel analysis of historic data. Ecol Appl 2012; 22:154-165. [PMID: 22471081 DOI: 10.1890/11-0150.1] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Projected climate change will affect existing forests, as substantial changes are predicted to occur during their life spans. Species that have ample intraspecific genetic differentiation, such as Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco), are expected to display population-specific growth responses to climate change. Using a mixed-effects modeling approach, we describe three-year height (HT) growth response to changes in climate of interior Douglas-fir populations. We incorporate climate information at the population level, yielding a model that is specific to both species and population. We use data from provenance tests from previous studies that comprised 236 populations from Idaho, Montana, and eastern Washington, USA. The most sensitive indicator of climate was the mean temperature of the coldest month. Population maximum HT and HT growth response to changes in climate were dependent on seed source climate. All populations had optimum HT growth when transferred to climates with warmer winters; those originating in sites with the warmest winters were taller across sites and had highest HT growth at transfer distances closest to zero; those from colder climates were shortest and had optimum HT growth when transferred the farthest. Although this differential response damped the height growth differences among populations, cold-climate populations still achieved their maximum growth at lower temperatures than warm-climate populations. The results highlight the relevance of understanding climate change impacts at the population level, particularly in a species with ample genetic variation among populations.
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Affiliation(s)
- Laura P Leites
- School of Forest Resources, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
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