1
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Hotopp AM, Olsen BJ, Ishaq SL, Frey SD, Kovach AI, Kinnison MT, Gigliotti FN, Roeder MR, Cammen KM. Plumage microorganism communities of tidal marsh sparrows. iScience 2024; 27:108668. [PMID: 38230264 PMCID: PMC10790016 DOI: 10.1016/j.isci.2023.108668] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Revised: 11/02/2023] [Accepted: 12/05/2023] [Indexed: 01/18/2024] Open
Abstract
Microorganism communities can shape host phenotype evolution but are often comprised of thousands of taxa with varied impact on hosts. Identification of taxa influencing host evolution relies on first describing microorganism communities and acquisition routes. Keratinolytic (keratin-degrading) microorganisms are hypothesized to be abundant in saltmarsh sediments and to contribute to plumage evolution in saltmarsh-adapted sparrows. Metabarcoding was used to describe plumage bacterial (16S rRNA) and fungal (ITS) communities in three sparrow species endemic to North America's Atlantic coast saltmarshes. Results describe limited within-species variability and moderate host species-level patterns in microorganism diversity and community composition. A small percentage of overall microorganism diversity was comprised of potentially keratinolytic microorganisms, warranting further functional studies. Distinctions between plumage and saltmarsh sediment bacteria, but not fungal, communities were detected, suggesting multiple bacterial acquisition routes and/or vertebrate host specialization. This research lays groundwork for future testing of causal links between microorganisms and avian host evolution.
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Affiliation(s)
- Alice M. Hotopp
- School of Biology and Ecology, University of Maine, Orono, ME 04469, USA
| | - Brian J. Olsen
- School of Biology and Ecology, University of Maine, Orono, ME 04469, USA
- Maine Center for Genetics in the Environment, University of Maine, Orono, ME 04469, USA
| | - Suzanne L. Ishaq
- School of Food and Agriculture, University of Maine, Orono, ME 04469, USA
| | - Serita D. Frey
- Department of Natural Resources and the Environment, University of New Hampshire, Durham, NH 03824, USA
| | - Adrienne I. Kovach
- Department of Natural Resources and the Environment, University of New Hampshire, Durham, NH 03824, USA
| | - Michael T. Kinnison
- School of Biology and Ecology, University of Maine, Orono, ME 04469, USA
- Maine Center for Genetics in the Environment, University of Maine, Orono, ME 04469, USA
| | - Franco N. Gigliotti
- Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT 06269, USA
| | | | - Kristina M. Cammen
- School of Marine Sciences, University of Maine, Orono, ME 04469, USA
- Maine Center for Genetics in the Environment, University of Maine, Orono, ME 04469, USA
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2
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Sanderson S, Bolnick DI, Kinnison MT, O'Dea RE, Gorné LD, Hendry AP, Gotanda KM. Contemporary changes in phenotypic variation, and the potential consequences for eco-evolutionary dynamics. Ecol Lett 2023; 26 Suppl 1:S127-S139. [PMID: 37840026 DOI: 10.1111/ele.14186] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Revised: 01/30/2023] [Accepted: 02/01/2023] [Indexed: 10/17/2023]
Abstract
Most studies assessing rates of phenotypic change focus on population mean trait values, whereas a largely overlooked additional component is changes in population trait variation. Theoretically, eco-evolutionary dynamics mediated by such changes in trait variation could be as important as those mediated by changes in trait means. To date, however, no study has comprehensively summarised how phenotypic variation is changing in contemporary populations. Here, we explore four questions using a large database: How do changes in trait variances compare to changes in trait means? Do different human disturbances have different effects on trait variance? Do different trait types have different effects on changes in trait variance? Do studies that established a genetic basis for trait change show different patterns from those that did not? We find that changes in variation are typically small; yet we also see some very large changes associated with particular disturbances or trait types. We close by interpreting and discussing the implications of our findings in the context of eco-evolutionary studies.
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Affiliation(s)
- Sarah Sanderson
- Department of Biology and Redpath Museum, McGill University, Montréal, Québec, Canada
| | - Daniel I Bolnick
- Department of Ecology & Evolutionary Biology, University of Connecticut, Storrs, Connecticut, USA
| | - Michael T Kinnison
- School of Biology and Ecology and Maine Center for Genetics in the Environment, University of Maine, Orono, Maine, USA
| | | | - Lucas D Gorné
- Department of Biology and Redpath Museum, McGill University, Montréal, Québec, Canada
- Department of Biological Sciences, Brock University, St. Catharine's, Ontario, Canada
- Département de Biologie, Université de Sherbrooke, Sherbrooke, Québec, Canada
- Facultad de Ciencias Exactas, Físicas y Naturales, Universidad Nacional de Córdoba, Córdoba, Argentina
| | - Andrew P Hendry
- Department of Biology and Redpath Museum, McGill University, Montréal, Québec, Canada
| | - Kiyoko M Gotanda
- Department of Biological Sciences, Brock University, St. Catharine's, Ontario, Canada
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3
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Holmes V, Aman J, York G, Kinnison MT. Correction: Environmental DNA detects Spawning Habitat of an ephemeral migrant fish (Anadromous Rainbow Smelt: Osmerus mordax). BMC Ecol Evol 2023; 23:22. [PMID: 37264333 DOI: 10.1186/s12862-023-02114-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/03/2023] Open
Affiliation(s)
- Vaughn Holmes
- Center for Genetics in the Environment and School of Biology and Ecology, University of Maine, Orono, USA.
| | - Jacob Aman
- Wells National Estuarine Research Reserve, Wells, USA
| | - Geneva York
- University of Maine Environmental DNA CORE Laboratory, Orono, USA
| | - Michael T Kinnison
- Center for Genetics in the Environment and School of Biology and Ecology, University of Maine, Orono, USA
- University of Maine Environmental DNA CORE Laboratory, Orono, USA
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4
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Holmes V, Aman J, York G, Kinnison MT. Environmental DNA detects Spawning Habitat of an ephemeral migrant fish (Anadromous Rainbow Smelt: Osmerus mordax). BMC Ecol Evol 2022; 22:121. [PMID: 36280813 PMCID: PMC9594880 DOI: 10.1186/s12862-022-02073-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Accepted: 09/26/2022] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Anadromous rainbow smelt (Osmerus mordax) have experienced a large range reduction in recent decades and the status of remnant spawning populations is poorly known in Maine, where these fish have significant ecological, cultural, and commercial relevance. Defining the remnant range of anadromous smelt is more difficult than for many declining fish species because adults are only ephemerally present while spawning in small coastal streams at night during spring runoff periods when traditional assessments can be unreliable or even hazardous. We hypothesized that eDNA might facilitate improved survey efforts to define smelt spawning habitat, but that detection could also face challenges from adult eDNA quickly flushing out of these small stream systems. We combined daytime eDNA sampling with nighttime fyke netting to ascertain a potential window of eDNA detection before conducting eDNA surveys in four streams of varying abundance. Hierarchical occupancy modeling was in turn employed to estimate eDNA encounter probabilities relative to numbers of sampling events (date), samples within events, and qPCR replicates within samples. RESULTS Results from the combined eDNA and fyke net study indicated eDNA was detectable over an extended period, culminating approximately 8-13 days following peak spawning, suggesting developing smelt larvae might be the primary source of eDNA. Subsequently, smelt eDNA was readily detected in eDNA surveys of four streams, particularly following remediation of PCR inhibitors. Hierarchical occupancy modeling confirmed our surveys had high empirical detection for most sites, and that future surveys employing at least three sampling events, three samples per event, and six qPCR replicates can afford greater than 90% combined detection capability in low abundance systems. CONCLUSIONS These results demonstrate that relatively modest eDNA sampling effort has high capacity to detect this ephemerally present species of concern at low to moderate abundances. As such, smelt eDNA detection could improve range mapping by providing longer survey windows, safer sampling conditions, and lower field effort in low density systems, than afforded by existing visual and netting approaches.
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Affiliation(s)
- Vaughn Holmes
- grid.21106.340000000121820794Center for Genetics in the Environment and School of Biology and Ecology, University of Maine, Orono, USA
| | - Jacob Aman
- grid.448608.60000 0000 9349 2745Wells National Estuarine Research Reserve, Wells, USA
| | - Geneva York
- grid.21106.340000000121820794University of Maine Environmental DNA CORE Laboratory, Orono, USA
| | - Michael T. Kinnison
- grid.21106.340000000121820794Center for Genetics in the Environment and School of Biology and Ecology, University of Maine, Orono, USA ,grid.21106.340000000121820794University of Maine Environmental DNA CORE Laboratory, Orono, USA
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5
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Moffett ER, Fryxell DC, Benavente JN, Kinnison MT, Palkovacs EP, Symons CC, Simon KS. The effect of pregnancy on metabolic scaling and population energy demand in the viviparous fish Gambusia affinis. Integr Comp Biol 2022; 62:icac099. [PMID: 35767874 DOI: 10.1093/icb/icac099] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Metabolism is a fundamental attribute of all organisms that influences how species affect and are affected by their natural environment. Differences between sexes in ectothermic species may substantially alter metabolic scaling patterns, particularly in viviparous or live-bearing species where females must support their basal metabolic costs and that of their embryos. Indeed, if pregnancy is associated with marked increases in metabolic demand and alters scaling patterns between sexes, this could in turn interact with natural sex ratio variation in nature to affect population-level energy demand. Here, we aimed to understand how sex and pregnancy influence metabolic scaling and how differences between sexes affect energy demand in Gambusia affinis (Western mosquitofish). Using the same method, we measured routine metabolic rate in the field on reproductively active fish and in the laboratory on virgin fish. Our data suggest that changes in energy expenditure related to pregnancy may lead to steeper scaling coefficients in females (b = 0.750) compared to males (b = 0.595). In contrast, virgin females and males had similar scaling coefficients, suggesting negligible sex differences in metabolic costs in reproductively inactive fish. Further, our data suggest that incorporating sex differences in allometric scaling may alter population-level energy demand by as much as 20-28%, with the most pronounced changes apparent in male-biased populations due to the lower scaling coefficient of males. Overall, our data suggest that differences in energy investment in reproduction between sexes driven by pregnancy may alter allometric scaling and population-level energy demand.
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Affiliation(s)
- Emma R Moffett
- Ecology and Evolutionary Biology, University of California, Irvine, USA
| | - David C Fryxell
- School of Environment, The University of Auckland, New Zealand
- Ecology and Evolutionary Biology, The University of California, Santa Cruz, USA
| | - J N Benavente
- School of Environment, The University of Auckland, New Zealand
| | - M T Kinnison
- School of Biology and Ecology,The University of Maine, USA
| | - E P Palkovacs
- Ecology and Evolutionary Biology, The University of California, Santa Cruz, USA
| | - C C Symons
- Ecology and Evolutionary Biology, University of California, Irvine, USA
| | - K S Simon
- School of Environment, The University of Auckland, New Zealand
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6
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Wood ZT, Palkovacs EP, Kinnison MT. Inconsistent evolution and growth-survival tradeoffs in Gambusia affinis. Proc Biol Sci 2022; 289:20212072. [PMID: 35168394 PMCID: PMC8848245 DOI: 10.1098/rspb.2021.2072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
Abstract
Growth-survival tradeoffs may be a generalizable mechanism influencing trajectories of prey evolution. Here, we investigate evolutionary contributions to growth and survival in western mosquitofish (Gambusia affinis) from 10 populations from high- and low-predation ancestral environments. We assess (i) the degree to which evolutionary components of growth and survival are consistent or inconsistent across populations within ancestral predation environments, and (ii) whether growth and survival trade off at the population level. We measure growth and survival on groups of common-reared mosquitofish in pond mesocosms. We find that evolution of growth is consistent, with fish from low-predation ancestral environments showing higher growth, while the evolution of survival is inconsistent, with significant population-level divergence unrelated to ancestral predation environment. Such inconsistency prevents a growth-survival tradeoff across populations. Thus, the generalizability of contemporary evolution probably depends on local context of evolutionary tradeoffs, and a continued focus on singular selective agents (e.g. predators) without such local context will impede insights into generalizable evolutionary patterns.
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Affiliation(s)
- Zachary T. Wood
- School of Biology and Ecology, Ecology and Environmental Sciences Program, and Maine Center for Genetics in the Environment, University of Maine, Orono, ME 04469, USA
| | - Eric P. Palkovacs
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA 95060, USA
| | - Michael T. Kinnison
- School of Biology and Ecology, Ecology and Environmental Sciences Program, and Maine Center for Genetics in the Environment, University of Maine, Orono, ME 04469, USA
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7
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Benavente JN, Fryxell DC, Kinnison MT, Palkovacs EP, Simon KS. Plasticity and evolution shape the scaling of metabolism and excretion along a geothermal temperature gradient. Funct Ecol 2022. [DOI: 10.1111/1365-2435.14020] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
| | - David C Fryxell
- University of Auckland School of Environment Auckland New Zealand
| | | | - Eric P Palkovacs
- University of California Santa Cruz Department of Ecology and Evolutionary Biology Santa Cruz CA USA
| | - Kevin S Simon
- University of Auckland School of Environment Auckland New Zealand
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8
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Sanderson S, Beausoleil MO, O'Dea RE, Wood ZT, Correa C, Frankel V, Gorné LD, Haines GE, Kinnison MT, Oke KB, Pelletier F, Pérez-Jvostov F, Reyes-Corral WD, Ritchot Y, Sorbara F, Gotanda KM, Hendry AP. The pace of modern life, revisited. Mol Ecol 2021; 31:1028-1043. [PMID: 34902193 DOI: 10.1111/mec.16299] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2021] [Revised: 11/15/2021] [Accepted: 11/22/2021] [Indexed: 12/28/2022]
Abstract
Wild populations must continuously respond to environmental changes or they risk extinction. Those responses can be measured as phenotypic rates of change, which can allow us to predict contemporary adaptive responses, some of which are evolutionary. About two decades ago, a database of phenotypic rates of change in wild populations was compiled. Since then, researchers have used (and expanded) this database to examine phenotypic responses to specific types of human disturbance. Here, we update the database by adding 5675 new estimates of phenotypic change. Using this newer version of the data base, now containing 7338 estimates of phenotypic change, we revisit the conclusions of four published articles. We then synthesize the expanded database to compare rates of change across different types of human disturbance. Analyses of this expanded database suggest that: (i) a small absolute difference in rates of change exists between human disturbed and natural populations, (ii) harvesting by humans results in higher rates of change than other types of disturbance, (iii) introduced populations have increased rates of change, and (iv) body size does not increase through time. Thus, findings from earlier analyses have largely held-up in analyses of our new database that encompass a much larger breadth of species, traits, and human disturbances. Lastly, we use new analyses to explore how various types of human disturbances affect rates of phenotypic change, and we call for this database to serve as a steppingstone for further analyses to understand patterns of contemporary phenotypic change.
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Affiliation(s)
- Sarah Sanderson
- Department of Biology and Redpath Museum, McGill University, Montréal, Québec, Canada
| | | | - Rose E O'Dea
- Department of Biology and Redpath Museum, McGill University, Montréal, Québec, Canada.,Evolution & Ecology Research Centre, UNSW, Sydney, New South Wales, Australia
| | - Zachary T Wood
- School of Biology and Ecology and Maine Center for Genetics in the Environment, University of Maine, Orono, Maine, USA
| | - Cristian Correa
- Facultad de Ciencias Forestales y Recursos Naturales, Instituto de Conservación Biodiversidad y Territorio, Universidad Austral de Chile, Valdivia, Chile.,Centro de Humedales Río Cruces, Universidad Austral de Chile, Valdivia, Chile
| | - Victor Frankel
- Department of Biology and Redpath Museum, McGill University, Montréal, Québec, Canada
| | - Lucas D Gorné
- Department of Biology and Redpath Museum, McGill University, Montréal, Québec, Canada.,Facultad de Ciencias Exactas Físicas y Naturales, Universidad Nacional de Córdoba, Córdoba, Argentina.,Consejo Nacional de Investigaciones Científicas y Técnicas, CONICET, IMBiV, Córdoba, Argentina.,Department of Biological Sciences, Brock University, St. Catharines, Ontario, Canada.,Département de Biologie, Université de Sherbrooke, Sherbrooke, Quebec, Canada
| | - Grant E Haines
- Department of Biology and Redpath Museum, McGill University, Montréal, Québec, Canada
| | - Michael T Kinnison
- School of Biology and Ecology and Maine Center for Genetics in the Environment, University of Maine, Orono, Maine, USA
| | - Krista B Oke
- College of Fisheries and Ocean Sciences, University of Alaska Fairbanks, Juneau, Alaska, USA
| | - Fanie Pelletier
- College of Fisheries and Ocean Sciences, University of Alaska Fairbanks, Juneau, Alaska, USA
| | - Felipe Pérez-Jvostov
- Department of Biology and Redpath Museum, McGill University, Montréal, Québec, Canada
| | - Winer D Reyes-Corral
- Department of Biology and Redpath Museum, McGill University, Montréal, Québec, Canada
| | - Yanny Ritchot
- College of Fisheries and Ocean Sciences, University of Alaska Fairbanks, Juneau, Alaska, USA
| | - Freedom Sorbara
- Department of Biology and Redpath Museum, McGill University, Montréal, Québec, Canada
| | - Kiyoko M Gotanda
- Department of Biological Sciences, Brock University, St. Catharines, Ontario, Canada.,Département de Biologie, Université de Sherbrooke, Sherbrooke, Quebec, Canada
| | - Andrew P Hendry
- Department of Biology and Redpath Museum, McGill University, Montréal, Québec, Canada
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9
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Wood ZT, Lopez LK, Symons CC, Robinson RR, Palkovacs EP, Kinnison MT. Drivers and cascading ecological consequences of Gambusia affinis trait variation. Am Nat 2021; 199:E91-E110. [DOI: 10.1086/717866] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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10
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Wood ZT, Wiegardt AK, Barton KL, Clark JD, Homola JJ, Olsen BJ, King BL, Kovach AI, Kinnison MT. Meta-analysis: Congruence of genomic and phenotypic differentiation across diverse natural study systems. Evol Appl 2021; 14:2189-2205. [PMID: 34603492 PMCID: PMC8477602 DOI: 10.1111/eva.13264] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Revised: 06/02/2021] [Accepted: 06/06/2021] [Indexed: 01/17/2023] Open
Abstract
Linking genotype to phenotype is a primary goal for understanding the genomic underpinnings of evolution. However, little work has explored whether patterns of linked genomic and phenotypic differentiation are congruent across natural study systems and traits. Here, we investigate such patterns with a meta-analysis of studies examining population-level differentiation at subsets of loci and traits putatively responding to divergent selection. We show that across the 31 studies (88 natural population-level comparisons) we examined, there was a moderate (R 2 = 0.39) relationship between genomic differentiation (F ST ) and phenotypic differentiation (P ST ) for loci and traits putatively under selection. This quantitative relationship between P ST and F ST for loci under selection in diverse taxa provides broad context and cross-system predictions for genomic and phenotypic adaptation by natural selection in natural populations. This context may eventually allow for more precise ideas of what constitutes "strong" differentiation, predictions about the effect size of loci, comparisons of taxa evolving in nonparallel ways, and more. On the other hand, links between P ST and F ST within studies were very weak, suggesting that much work remains in linking genomic differentiation to phenotypic differentiation at specific phenotypes. We suggest that linking genotypes to specific phenotypes can be improved by correlating genomic and phenotypic differentiation across a spectrum of diverging populations within a taxon and including wide coverage of both genomes and phenomes.
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Affiliation(s)
- Zachary T. Wood
- School of Biology and EcologyUniversity of MaineOronoMEUSA
- Maine Center for Genetics in the EnvironmentOronoMEUSA
| | - Andrew K. Wiegardt
- Department of Natural Resources and the EnvironmentUniversity of New HampshireDurhamNHUSA
| | - Kayla L. Barton
- Department of Molecular & Biomedical SciencesUniversity of MaineOronoMEUSA
| | - Jonathan D. Clark
- Department of Natural Resources and the EnvironmentUniversity of New HampshireDurhamNHUSA
| | - Jared J. Homola
- Department of Fisheries and WildlifeMichigan State UniversityEast LansingMIUSA
| | - Brian J. Olsen
- Maine Center for Genetics in the EnvironmentOronoMEUSA
- Department of Wildlife, Fisheries, and Conservation BiologyUniversity of MaineOronoMEUSA
| | - Benjamin L. King
- Department of Molecular & Biomedical SciencesUniversity of MaineOronoMEUSA
| | - Adrienne I. Kovach
- Department of Natural Resources and the EnvironmentUniversity of New HampshireDurhamNHUSA
| | - Michael T. Kinnison
- School of Biology and EcologyUniversity of MaineOronoMEUSA
- Maine Center for Genetics in the EnvironmentOronoMEUSA
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11
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Wood ZT, Lacoursière-Roussel A, LeBlanc F, Trudel M, Kinnison MT, Garry McBrine C, Pavey SA, Gagné N. Spatial Heterogeneity of eDNA Transport Improves Stream Assessment of Threatened Salmon Presence, Abundance, and Location. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.650717] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Abstract
The integration of environmental DNA (eDNA) within management strategies for lotic organisms requires translating eDNA detection and quantification data into inferences of the locations and abundances of target species. Understanding how eDNA is distributed in space and time within the complex environments of rivers and streams is a major factor in achieving this translation. Here we study bidimensional eDNA signals in streams to predict the position and abundance of Atlantic salmon (Salmo salar) juveniles. We use data from sentinel cages with a range of abundances (3–63 juveniles) that were deployed in three coastal streams in New Brunswick, Canada. We evaluate the spatial patterns of eDNA dispersal and determine the effect of discharge on the dilution rate of eDNA. Our results show that eDNA exhibits predictable plume dynamics downstream from sources, with eDNA being initially concentrated and transported in the midstream, but eventually accumulating in stream margins with time and distance. From these findings we developed a fish detection and distribution prediction model based on the eDNA ratio in midstream versus bankside sites for a variety of fish distribution scenarios. Finally, we advise that sampling midstream at every 400 m is sufficient to detect a single fish at low velocity, but sampling efforts need to be increased at higher water velocity (every 100 m in the systems surveyed in this study). Studying salmon eDNA spatio-temporal patterns in lotic environments is essential to developing strong quantitative population assessment models that successfully leverage eDNA as a tool to protect salmon populations.
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12
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Abstract
Abstract
Humans are dominant global drivers of ecological and evolutionary change, rearranging ecosystems and natural selection. In the present article, we show increasing evidence that human activity also plays a disproportionate role in shaping the eco-evolutionary potential of systems—the likelihood of ecological change generating evolutionary change and vice versa. We suggest that the net outcome of human influences on trait change, ecology, and the feedback loops that link them will often (but not always) be to increase eco-evolutionary potential, with important consequences for stability and resilience of populations, communities, and ecosystems. We also integrate existing ecological and evolutionary metrics to predict and manage the eco-evolutionary dynamics of human-affected systems. To support this framework, we use a simple eco–evo feedback model to show that factors affecting eco-evolutionary potential are major determinants of eco-evolutionary dynamics. Our framework suggests that proper management of anthropogenic effects requires a science of human effects on eco-evolutionary potential.
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Affiliation(s)
- Zachary T Wood
- School of Biology and Ecology and with the Maine Center for Genetics in the Environment at the University of Maine, Orono, Maine, United States
| | - Eric P Palkovacs
- Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, California, United States
| | - Brian J Olsen
- School of Biology and Ecology and with the Maine Center for Genetics in the Environment at the University of Maine, Orono, Maine, United States
| | - Michael T Kinnison
- School of Biology and Ecology and with the Maine Center for Genetics in the Environment at the University of Maine, Orono, Maine, United States
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13
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Wood ZT, Shepard ID, Hurley ST, Paisker MR, Hensley VR, Kinnison MT. Sex-Dependent Cold Tolerance at the Northern Invasive Range Limit of Gambusia affinis on Cape Cod, Massachusetts. COPEIA 2020. [DOI: 10.1643/ce-19-332] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Affiliation(s)
- Zachary T. Wood
- Ecology and Environmental Sciences Program, School of Biology and Ecology, 5751 Murray Hall, University of Maine, Orono, Maine; (ZTW) . Send reprint requests to ZTW
| | - Isaac D. Shepard
- Ecology and Environmental Sciences Program, School of Biology and Ecology, 5751 Murray Hall, University of Maine, Orono, Maine; (ZTW) . Send reprint requests to ZTW
| | - Stephen T. Hurley
- Massachusetts Division of Fisheries & Wildlife, Buzzards Bay, Massachusetts
| | - Mitchell R. Paisker
- Ecology and Environmental Sciences Program, School of Biology and Ecology, 5751 Murray Hall, University of Maine, Orono, Maine; (ZTW) . Send reprint requests to ZTW
| | - Vanessa R. Hensley
- Ecology and Environmental Sciences Program, School of Biology and Ecology, 5751 Murray Hall, University of Maine, Orono, Maine; (ZTW) . Send reprint requests to ZTW
| | - Michael T. Kinnison
- Ecology and Environmental Sciences Program, School of Biology and Ecology, 5751 Murray Hall, University of Maine, Orono, Maine; (ZTW) . Send reprint requests to ZTW
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14
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Hendry AP, Kinnison MT. Contemporary Evolution. Evol Biol 2020. [DOI: 10.1093/obo/9780199941728-0126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
The term “contemporary evolution” is typically used in reference to ongoing or recent genetically based (heritable) phenotypic changes taking place in wild populations. In some cases, the genetic and genomic basis for these phenotypic changes can be identified and documented. Contemporary evolution is most apparent when organisms experience dramatic environmental changes, especially due to human causes such as commercial fisheries, climate change, pollution, or urbanization. Contemporary evolution then influences a number of evolutionary and ecological processes, such as ecological speciation, population dynamics (including evolutionary rescue), community structure, and ecosystem function. As a result, contemporary evolution has important applications in conservation biology, environmental sciences, and sustainability science.
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15
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Homola JJ, Loftin CS, Cammen KM, Helbing CC, Birol I, Schultz TF, Kinnison MT. Replicated Landscape Genomics Identifies Evidence of Local Adaptation to Urbanization in Wood Frogs. J Hered 2020; 110:707-719. [PMID: 31278891 PMCID: PMC6785938 DOI: 10.1093/jhered/esz041] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2018] [Accepted: 06/28/2019] [Indexed: 12/20/2022] Open
Abstract
Native species that persist in urban environments may benefit from local adaptation to novel selection factors. We used double-digest restriction-side associated DNA (RAD) sequencing to evaluate shifts in genome-wide genetic diversity and investigate the presence of parallel evolution associated with urban-specific selection factors in wood frogs (Lithobates sylvaticus). Our replicated paired study design involved 12 individuals from each of 4 rural and urban populations to improve our confidence that detected signals of selection are indeed associated with urbanization. Genetic diversity measures were less for urban populations; however, the effect size was small, suggesting little biological consequence. Using an FST outlier approach, we identified 37 of 8344 genotyped single nucleotide polymorphisms with consistent evidence of directional selection across replicates. A genome-wide association study analysis detected modest support for an association between environment type and 12 of the 37 FST outlier loci. Discriminant analysis of principal components using the 37 FST outlier loci produced correct reassignment for 87.5% of rural samples and 93.8% of urban samples. Eighteen of the 37 FST outlier loci mapped to the American bullfrog (Rana [Lithobates] catesbeiana) genome, although none were in coding regions. This evidence of parallel evolution to urban environments provides a powerful example of the ability of urban landscapes to direct evolutionary processes.
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Affiliation(s)
- Jared J Homola
- School of Biology and Ecology, University of Maine, Orono, ME.,Department of Fisheries and Wildlife, Michigan State University, East Lansing, MI
| | - Cynthia S Loftin
- the US Geological Survey, Maine Cooperative Fish and Wildlife Research Unit, Orono, ME
| | | | - Caren C Helbing
- the Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC, Canada
| | - Inanc Birol
- the Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada
| | - Thomas F Schultz
- the Division of Marine Science and Conservation, Nicholas School of the Environment, Duke University, Beaufort, NC
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16
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Fryxell DC, Hoover AN, Alvarez DA, Arnesen FJ, Benavente JN, Moffett ER, Kinnison MT, Simon KS, Palkovacs EP. Recent warming reduces the reproductive advantage of large size and contributes to evolutionary downsizing in nature. Proc Biol Sci 2020; 287:20200608. [PMID: 32486974 PMCID: PMC7341922 DOI: 10.1098/rspb.2020.0608] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
Abstract
Body size is a key functional trait that is predicted to decline under warming. Warming is known to cause size declines via phenotypic plasticity, but evolutionary responses of body size to warming are poorly understood. To test for warming-induced evolutionary responses of body size and growth rates, we used populations of mosquitofish (Gambusia affinis) recently established (less than 100 years) from a common source across a strong thermal gradient (19–33°C) created by geothermal springs. Each spring is remarkably stable in temperature and is virtually closed to gene flow from other thermal environments. Field surveys show that with increasing site temperature, body size distributions become smaller and the reproductive advantage of larger body size decreases. After common rearing to reveal recently evolved trait differences, warmer-source populations expressed slowed juvenile growth rates and increased reproductive effort at small sizes. These results are consistent with an adaptive basis of the plastic temperature–size rule, and they suggest that temperature itself can drive the evolution of countergradient variation in growth rates. The rapid evolution of reduced juvenile growth rates and greater reproduction at a small size should contribute to substantial body downsizing in populations, with implications for population dynamics and for ecosystems in a warming world.
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Affiliation(s)
- David C Fryxell
- School of Environment, University of Auckland, Auckland 1010, New Zealand.,Department of Ecology and Evolutionary Biology, University of California, Santa Cruz 95060, CA, USA
| | - Alexander N Hoover
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz 95060, CA, USA
| | - Daniel A Alvarez
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz 95060, CA, USA
| | - Finn J Arnesen
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz 95060, CA, USA
| | | | - Emma R Moffett
- School of Environment, University of Auckland, Auckland 1010, New Zealand
| | | | - Kevin S Simon
- School of Environment, University of Auckland, Auckland 1010, New Zealand
| | - Eric P Palkovacs
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz 95060, CA, USA
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17
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Wood ZT, Fryxell DC, Moffett ER, Kinnison MT, Simon KS, Palkovacs EP. Prey adaptation along a competition-defense tradeoff cryptically shifts trophic cascades from density- to trait-mediated. Oecologia 2020; 192:767-778. [PMID: 31989320 DOI: 10.1007/s00442-020-04610-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2019] [Accepted: 01/16/2020] [Indexed: 11/25/2022]
Abstract
Trophic cascades have become a dominant paradigm in ecology, yet considerable debate remains about the relative strength of density- (consumptive) and trait-mediated (non-consumptive) effects in trophic cascades. This debate may, in part, be resolved by considering prey experience, which shapes prey traits (through genetic and plastic change) and influences prey survival (and therefore density). Here, we investigate the cascading role of prey experience through the addition of mosquitofish (Gambusia affinis) from predator-experienced or predator-naïve sources to mesocosms containing piscivorous largemouth bass (Micropterus salmoides), zooplankton, and phytoplankton. These two sources were positioned along a competition-defense tradeoff. Results show that predator-naïve mosquitofish suffered higher depredation rates, which drove a density-mediated cascade, whereas predator-experienced mosquitofish exhibited higher survival but fed less, which drove a trait-mediated cascade. Both cascades were similar in strength, leading to indistinguishable top-down effects on lower trophic levels. Therefore, the accumulation of prey experience with predators can cryptically shift cascade mechanisms from density- to trait-mediated.
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Affiliation(s)
- Zachary T Wood
- School of Biology and Ecology, Ecology and Environmental Sciences Program, University of Maine, Orono, ME, 04469, USA.
| | - David C Fryxell
- Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA, 95064, USA
- School of Environment, University of Auckland, Auckland, 1142, New Zealand
| | - Emma R Moffett
- School of Environment, University of Auckland, Auckland, 1142, New Zealand
| | - Michael T Kinnison
- School of Biology and Ecology, Ecology and Environmental Sciences Program, University of Maine, Orono, ME, 04469, USA
| | - Kevin S Simon
- School of Environment, University of Auckland, Auckland, 1142, New Zealand
| | - Eric P Palkovacs
- Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA, 95064, USA
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18
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Abstract
Eco-evolutionary feedbacks may determine the outcome of predator-prey interactions in nature, but little work has been done to quantify the feedback effect of short-term prey adaptation on predator performance. We tested the effects of prey availability and recent (less than 100 years) prey adaptation on the feeding and growth rate of largemouth bass (Micropterus salmoides), foraging on western mosquitofish (Gambusia affinis). Field surveys showed higher densities and larger average body sizes of mosquitofish in recently introduced populations without bass. Over a six-week mesocosm experiment, bass were presented with either a high or low availability of mosquitofish prey from recently established populations either naive or experienced with bass. Naive mosquitofish were larger, less cryptic and more vulnerable to bass predation compared to their experienced counterparts. Bass consumed more naive prey, grew more quickly with naive prey, and grew more quickly per unit biomass of naive prey consumed. The effect of mosquitofish history with the bass on bass growth was similar in magnitude to the effect of mosquitofish availability. In showing that recently derived predation-related prey phenotypes strongly affect predator performance, this study supports the presence of reciprocal predator-prey trait feedbacks in nature.
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Affiliation(s)
- David C Fryxell
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA 95060, USA.,School of Environment, University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand
| | - Zachary T Wood
- School of Biology and Ecology, Ecology and Environmental Sciences Program, University of Maine, Orono, ME 04469, USA
| | - Rebecca Robinson
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA 95060, USA
| | - Michael T Kinnison
- School of Biology and Ecology, Ecology and Environmental Sciences Program, University of Maine, Orono, ME 04469, USA
| | - Eric P Palkovacs
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA 95060, USA
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19
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Homola JJ, Loftin CS, Kinnison MT. Landscape genetics reveals unique and shared effects of urbanization for two sympatric pool-breeding amphibians. Ecol Evol 2019; 9:11799-11823. [PMID: 31695889 PMCID: PMC6822048 DOI: 10.1002/ece3.5685] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2019] [Revised: 08/26/2019] [Accepted: 08/30/2019] [Indexed: 01/05/2023] Open
Abstract
Metapopulation-structured species can be negatively affected when landscape fragmentation impairs connectivity. We investigated the effects of urbanization on genetic diversity and gene flow for two sympatric amphibian species, spotted salamanders (Ambystoma maculatum) and wood frogs (Lithobates sylvaticus), across a large (>35,000 km2) landscape in Maine, USA, containing numerous natural and anthropogenic gradients. Isolation-by-distance (IBD) patterns differed between the species. Spotted salamanders showed a linear and relatively high variance relationship between genetic and geographic distances (r = .057, p < .001), whereas wood frogs exhibited a strongly nonlinear and lower variance relationship (r = 0.429, p < .001). Scale dependence analysis of IBD found gene flow has its most predictable influence (strongest IBD correlations) at distances up to 9 km for spotted salamanders and up to 6 km for wood frogs. Estimated effective migration surfaces revealed contrasting patterns of high and low genetic diversity and gene flow between the two species. Population isolation, quantified as the mean IBD residuals for each population, was associated with local urbanization and less genetic diversity in both species. The influence of geographic proximity and urbanization on population connectivity was further supported by distance-based redundancy analysis and multiple matrix regression with randomization. Resistance surface modeling found interpopulation connectivity to be influenced by developed land cover, light roads, interstates, and topography for both species, plus secondary roads and rivers for wood frogs. Our results highlight the influence of anthropogenic landscape features within the context of natural features and broad spatial genetic patterns, in turn supporting the premise that while urbanization significantly restricts interpopulation connectivity for wood frogs and spotted salamanders, specific landscape elements have unique effects on these two sympatric species.
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Affiliation(s)
| | - Cynthia S. Loftin
- Maine Cooperative Fish and Wildlife Research UnitU.S. Geological SurveyOronoMEUSA
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20
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Affiliation(s)
- Zachary T. Wood
- School of Biology and Ecology and Ecology and Environmental Sciences Program University of Maine Orono Maine
| | - David C. Fryxell
- Department of Ecology and Evolutionary Biology University of California, Santa Cruz Santa Cruz California
| | - Rebecca R. Robinson
- Department of Ecology and Evolutionary Biology University of California, Santa Cruz Santa Cruz California
| | - Eric P. Palkovacs
- Department of Ecology and Evolutionary Biology University of California, Santa Cruz Santa Cruz California
| | - Michael T. Kinnison
- School of Biology and Ecology and Ecology and Environmental Sciences Program University of Maine Orono Maine
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21
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Fryxell DC, Weiler DE, Kinnison MT, Palkovacs EP. Eco-Evolutionary Dynamics of Sexual Dimorphism. Trends Ecol Evol 2019; 34:591-594. [DOI: 10.1016/j.tree.2019.04.007] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Revised: 04/02/2019] [Accepted: 04/09/2019] [Indexed: 10/26/2022]
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22
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Ware IM, Fitzpatrick CR, Senthilnathan A, Bayliss SLJ, Beals KK, Mueller LO, Summers JL, Wooliver RC, Van Nuland ME, Kinnison MT, Palkovacs EP, Schweitzer JA, Bailey JK. Feedbacks link ecosystem ecology and evolution across spatial and temporal scales: Empirical evidence and future directions. Funct Ecol 2019. [DOI: 10.1111/1365-2435.13267] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Ian M. Ware
- Department of Ecology and Evolutionary Biology University of Tennessee Knoxville Tennessee
| | | | | | - Shannon L. J. Bayliss
- Department of Ecology and Evolutionary Biology University of Tennessee Knoxville Tennessee
| | - Kendall K. Beals
- Department of Ecology and Evolutionary Biology University of Tennessee Knoxville Tennessee
| | - Liam O. Mueller
- Department of Ecology and Evolutionary Biology University of Tennessee Knoxville Tennessee
| | - Jennifer L. Summers
- Department of Ecology and Evolutionary Biology University of Tennessee Knoxville Tennessee
| | - Rachel C. Wooliver
- Department of Ecology and Evolutionary Biology University of Tennessee Knoxville Tennessee
| | | | | | - Eric P. Palkovacs
- Department of Ecology and Evolutionary Biology University of California Santa Cruz California
| | - Jennifer A. Schweitzer
- Department of Ecology and Evolutionary Biology University of Tennessee Knoxville Tennessee
| | - Joseph K. Bailey
- Department of Ecology and Evolutionary Biology University of Tennessee Knoxville Tennessee
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23
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Moffett ER, Fryxell DC, Palkovacs EP, Kinnison MT, Simon KS. Local adaptation reduces the metabolic cost of environmental warming. Ecology 2018; 99:2318-2326. [PMID: 30030930 DOI: 10.1002/ecy.2463] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Revised: 05/15/2018] [Accepted: 07/05/2018] [Indexed: 11/07/2022]
Abstract
Metabolism shapes the ecosystem role of organisms by dictating their energy demand and nutrient recycling potential. Metabolic theory (MTE) predicts consumer metabolic and recycling rates will rise with warming, especially if body size declines, but it ignores potential for adaptation. We measured metabolic and nutrient excretion rates of individuals from populations of a globally invasive fish that colonized sites spanning a wide temperature range (19-37°C) on two continents within the last 100 yr. Fish body size declined across our temperature gradient and MTE predicted large rises in population energy demand and nutrient recycling. However, we found that the allometry and temperature dependency of metabolism varied in a countergradient pattern with local temperature in a way that offset predictions of MTE. Scaling of nutrient excretion was more variable and did not track temperature. Our results suggest that adaptation can reduce the metabolic cost of warming, increasing the prospects for population persistence under extreme warming scenarios.
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Affiliation(s)
- Emma R Moffett
- School of Environment, The University of Auckland, Private Bag 92019, Auckland, New Zealand
| | - David C Fryxell
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, California, 95060, USA
| | - Eric P Palkovacs
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, California, 95060, USA
| | - Michael T Kinnison
- School of Biology and Ecology, The University of Maine, Orono, Maine, 04469, USA
| | - Kevin S Simon
- School of Environment, The University of Auckland, Private Bag 92019, Auckland, New Zealand
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24
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Wood ZT, Palkovacs EP, Kinnison MT. Eco-evolutionary Feedbacks from Non-target Species Influence Harvest Yield and Sustainability. Sci Rep 2018; 8:6389. [PMID: 29686227 PMCID: PMC5913267 DOI: 10.1038/s41598-018-24555-0] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2017] [Accepted: 03/21/2018] [Indexed: 11/22/2022] Open
Abstract
Evolution in harvested species has become a major concern for its potential to affect yield, sustainability, and recovery. However, the current singular focus on harvest-mediated evolution in target species overlooks the potential for evolution in non-target members of communities. Here we use an individual-based model to explore the scope and pattern of harvest-mediated evolution at non-target trophic levels and its potential feedbacks on abundance and yield of the harvested species. The model reveals an eco-evolutionary trophic cascade, in which harvest at top trophic levels drives evolution of greater defense or competitiveness at subsequently lower trophic levels, resulting in alternating feedbacks on the abundance and yield of the harvested species. The net abundance and yield effects of these feedbacks depends on the intensity of harvest and attributes of non-target species. Our results provide an impetus and framework to evaluate the role of non-target species evolution in determining fisheries yield and sustainability.
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Affiliation(s)
- Zachary T Wood
- School of Biology and Ecology, University of Maine, Orono, ME, USA. .,Ecology and Environmental Sciences Program, University of Maine, Orono, ME, USA.
| | - Eric P Palkovacs
- Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, USA
| | - Michael T Kinnison
- School of Biology and Ecology, University of Maine, Orono, ME, USA.,Ecology and Environmental Sciences Program, University of Maine, Orono, ME, USA
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25
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Tuckett QM, Simon KS, Kinnison MT. Cultural Eutrophication Mediates Context-Dependent Eco-Evolutionary Feedbacks of a Fish Invader. COPEIA 2017. [DOI: 10.1643/ot-16-540] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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26
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Abstract
We evaluate methods for measuring and specifying rates of microevolution in the wild, with particular regard to studies of contemporary, often deemed "rapid," evolution. A considerable amount of ambiguity and inconsistency persists within the field, and we provide a number of suggestions that should improve study design, inference, and clarity of presentation. (1) Some studies measure change over time within a population (allochronic) and others measure the difference between two populations that had a common ancestor in the past (synchronic). Allochronic studies can be used to estimate rates of "evolution," whereas synchronic studies more appropriately estimate rates of "divergence." Rates of divergence may range from a small fraction to many times the actual evolutionary rates in the component populations. (2) Some studies measure change using individuals captured from the wild, whereas others measure differences after rearing in a common environment. The first type of study can be used to specify "phenotypic" rates and the later "genetic" rates. (3) The most commonly used evolutionary rate metric, the darwin, has a number of theoretical shortcomings. Studies of microevolution would benefit from specifying rates in standard deviations per generation, the haldane. (4) Evolutionary rates are typically specified without an indication of their precision. Readily available methods for specifying confidence intervals and statistical significance (regression, bootstrapping, randomization) should be implemented. (5) Microevolutionists should strive to accumulate time series, which can reveal temporal shifts in the rate of evolution and can be used to identify evolutionary patterns. (6) Evolutionary rates provide a convenient way to compare the tempo of evolution across studies, traits, taxa, and time scales, but such comparisons are subject to varying degrees of confidence. Comparisons across different time scales are particularly tenuous. (7) A number of multivariate rate measures exist, but considerable theoretical development is required before their utility can be determined. We encourage the continued investigation of evolutionary rates because the information they provide is relevant to a wide range of theoretical and practical issues.
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Affiliation(s)
- Andrew P Hendry
- Department of Zoology, University of British Columbia, 6270 University Boulevard, Vancouver, British Columbia, V6T 1Z4, Canada
| | - Michael T Kinnison
- Department of Biological Sciences, Dartmouth College, Gilman Hall, Hanover, New Hampshire, 03755
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27
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Tuckett QM, Kinnison MT, Saros JE, Simon KS. Population divergence in fish elemental phenotypes associated with trophic phenotypes and lake trophic state. Oecologia 2016; 182:765-78. [PMID: 27568028 DOI: 10.1007/s00442-016-3714-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2015] [Accepted: 08/21/2016] [Indexed: 11/28/2022]
Abstract
Studies of ecological stoichiometry typically emphasize the role of interspecific variation in body elemental content and the effects of species or family identity. Recent work suggests substantial variation in body stoichiometry can also exist within species. The importance of this variation will depend on insights into its origins and consequences at various ecological scales, including the distribution of elemental phenotypes across landscapes and their role in nutrient recycling. We investigated whether trophic divergence can produce predictable patterns of elemental phenotypes among populations of an invasive fish, the white perch (Morone americana), and whether elemental phenotypes predict nutrient excretion. White perch populations exhibited a gradient of trophic phenotypes associated with landscape-scale variation in lake trophic state. Perch body chemistry varied considerably among lakes (from 0.09 for % C to 0.31-fold for % P) casting doubt on the assumption of homogenous elemental phenotypes. This variation was correlated with divergence in fish body shape and other trophic traits. Elemental phenotypes covaried (r (2) up to 0.84) with lake trophic state. This covariation likely arose in contemporary time since many of these perch populations were introduced in the last century and the trophic state in many of the lakes has changed in the past few decades. Nutrient excretion varied extensively among populations, but was not readily related to fish body chemistry or lake trophic state. This suggests that predictable patterns of fish body composition can arise quickly through trophic specialization to lake conditions, but such elemental phenotypes may not translate to altered nutrient recycling by fish.
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Affiliation(s)
- Quenton M Tuckett
- School of Biology and Ecology, University of Maine, Orono, ME, 04469, USA. .,Tropical Aquaculture Laboratory, University of Florida, Ruskin, FL, 33570, USA.
| | - Michael T Kinnison
- School of Biology and Ecology, University of Maine, Orono, ME, 04469, USA
| | - Jasmine E Saros
- School of Biology and Ecology, University of Maine, Orono, ME, 04469, USA
| | - Kevin S Simon
- School of Environment, University of Auckland, Auckland, New Zealand
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28
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Fryxell DC, Arnett HA, Apgar TM, Kinnison MT, Palkovacs EP. Sex ratio variation shapes the ecological effects of a globally introduced freshwater fish. Proc Biol Sci 2016; 282:20151970. [PMID: 26490793 DOI: 10.1098/rspb.2015.1970] [Citation(s) in RCA: 70] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Sex ratio and sexual dimorphism have long been of interest in population and evolutionary ecology, but consequences for communities and ecosystems remain untested. Sex ratio could influence ecological conditions whenever sexual dimorphism is associated with ecological dimorphism in species with strong ecological interactions. We tested for ecological implications of sex ratio variation in the sexually dimorphic western mosquitofish, Gambusia affinis. This species causes strong pelagic trophic cascades and exhibits substantial variation in adult sex ratios. We found that female-biased populations induced stronger pelagic trophic cascades compared with male-biased populations, causing larger changes to key community and ecosystem responses, including zooplankton abundance, phytoplankton abundance, productivity, pH and temperature. The magnitude of such effects indicates that sex ratio is important for mediating the ecological role of mosquitofish. Because both sex ratio variation and sexual dimorphism are common features of natural populations, our findings should encourage broader consideration of the ecological significance of sex ratio variation in nature, including the relative contributions of various sexually dimorphic traits to these effects.
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Affiliation(s)
- David C Fryxell
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA 95060, USA
| | - Heather A Arnett
- School of Biology and Ecology, University of Maine, Orono, ME 04469, USA
| | - Travis M Apgar
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA 95060, USA
| | - Michael T Kinnison
- School of Biology and Ecology, University of Maine, Orono, ME 04469, USA
| | - Eric P Palkovacs
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA 95060, USA
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29
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Arnett HA, Kinnison MT. Predator-induced phenotypic plasticity of shape and behavior: parallel and unique patterns across sexes and species. Curr Zool 2016; 63:369-378. [PMID: 29491997 PMCID: PMC5804186 DOI: 10.1093/cz/zow072] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2016] [Accepted: 06/12/2016] [Indexed: 11/12/2022] Open
Abstract
Phenotypic plasticity is often an adaptation of organisms to cope with temporally or spatially heterogenous landscapes. Like other adaptations, one would predict that different species, populations, or sexes might thus show some degree of parallel evolution of plasticity, in the form of parallel reaction norms, when exposed to analogous environmental gradients. Indeed, one might even expect parallelism of plasticity to repeatedly evolve in multiple traits responding to the same gradient, resulting in integrated parallelism of plasticity. In this study, we experimentally tested for parallel patterns of predator-mediated plasticity of size, shape, and behavior of 2 species and sexes of mosquitofish. Examination of behavioral trials indicated that the 2 species showed unique patterns of behavioral plasticity, whereas the 2 sexes in each species showed parallel responses. Fish shape showed parallel patterns of plasticity for both sexes and species, albeit males showed evidence of unique plasticity related to reproductive anatomy. Moreover, patterns of shape plasticity due to predator exposure were broadly parallel to what has been depicted for predator-mediated population divergence in other studies (slender bodies, expanded caudal regions, ventrally located eyes, and reduced male gonopodia). We did not find evidence of phenotypic plasticity in fish size for either species or sex. Hence, our findings support broadly integrated parallelism of plasticity for sexes within species and less integrated parallelism for species. We interpret these findings with respect to their potential broader implications for the interacting roles of adaptation and constraint in the evolutionary origins of parallelism of plasticity in general.
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Affiliation(s)
- Heather A Arnett
- School of Biology and Ecology, University of Maine, Orono, ME 04469, USA
| | - Michael T Kinnison
- School of Biology and Ecology, University of Maine, Orono, ME 04469, USA
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30
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Kinnison MT, Hairston NG, Hendry AP. Cryptic eco-evolutionary dynamics. Ann N Y Acad Sci 2016; 1360:120-44. [PMID: 26619300 DOI: 10.1111/nyas.12974] [Citation(s) in RCA: 57] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2015] [Revised: 10/22/2015] [Accepted: 10/23/2015] [Indexed: 12/17/2022]
Abstract
Natural systems harbor complex interactions that are fundamental parts of ecology and evolution. These interactions challenge our inclinations and training to seek the simplest explanations of patterns in nature. Not least is the likelihood that some complex processes might be missed when their patterns look similar to predictions for simpler mechanisms. Along these lines, theory and empirical evidence increasingly suggest that environmental, ecological, phenotypic, and genetic processes can be tightly intertwined, resulting in complex and sometimes surprising eco-evolutionary dynamics. The goal of this review is to temper inclinations to unquestioningly seek the simplest explanations in ecology and evolution, by recognizing that some eco-evolutionary outcomes may appear very similar to purely ecological, purely evolutionary, or even null expectations, and thus be cryptic. We provide theoretical and empirical evidence for observational biases and mechanisms that might operate among the various links in eco-evolutionary feedbacks to produce cryptic patterns. Recognition that cryptic dynamics can be associated with outcomes like stability, resilience, recovery, or coexistence in a dynamically changing world provides added impetus for finding ways to study them.
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Affiliation(s)
| | - Nelson G Hairston
- Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, New York
| | - Andrew P Hendry
- Redpath Museum and Department of Biology, McGill University, Montreal, Quebec, Canada
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31
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Affiliation(s)
- Scott Carroll
- Institute for Contemporary Evolution, Davis, CA, USA and Department of Entomology, University of California Davis, CA, USA
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32
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Weese DJ, Schwartz AK, Bentzen P, Hendry AP, Kinnison MT. Eco-evolutionary effects on population recovery following catastrophic disturbance. Evol Appl 2015; 4:354-66. [PMID: 25567978 PMCID: PMC3352564 DOI: 10.1111/j.1752-4571.2010.00169.x] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2010] [Accepted: 10/08/2010] [Indexed: 11/27/2022] Open
Abstract
Fine-scale genetic diversity and contemporary evolution can theoretically influence ecological dynamics in the wild. Such eco-evolutionary effects might be particularly relevant to the persistence of populations facing acute or chronic environmental change. However, experimental data on wild populations is currently lacking to support this notion. One way that ongoing evolution might influence the dynamics of threatened populations is through the role that selection plays in mediating the 'rescue effect', the ability of migrants to contribute to the recovery of populations facing local disturbance and decline. Here, we combine experiments with natural catastrophic events to show that ongoing evolution is a major determinant of migrant contributions to population recovery in Trinidadian guppies (Poecilia reticulata). These eco-evolutionary limits on migrant contributions appear to be mediated by the reinforcing effects of natural and sexual selection against migrants, despite the close geographic proximity of migrant sources. These findings show that ongoing adaptive evolution can be a double-edged sword for population persistence, maintaining local fitness at a cost to demographic risk. Our study further serves as a potent reminder that significant evolutionary and eco-evolutionary dynamics might be at play even where the phenotypic status quo is largely maintained generation to generation.
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Affiliation(s)
- Dylan J Weese
- School of Biology and Ecology, University of Maine ME, USA
| | - Amy K Schwartz
- Division of Ecology and Evolutionary Biology, University of Glasgow UK
| | - Paul Bentzen
- Department of Biology, Dalhousie University Halifax, NS, Canada
| | - Andrew P Hendry
- School of Life Sciences, McGill University Montreal, QC, Canada
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Abstract
We are witnessing a global, but unplanned, evolutionary experiment with the biodiversity of the planet. Anthropogenic disturbances such as habitat degradation and climate change result in evolutionary mismatch between the environments to which species are adapted and those in which they now exist. The impacts of unmanaged evolution are pervasive, but approaches to address them have received little attention. We review the evolutionary challenges of managing populations in the Anthropocene and introduce the concept of prescriptive evolution, which considers how evolutionary processes may be leveraged to proactively promote wise management. We advocate the planned management of evolutionary processes and explore the advantages of evolutionary interventions to preserve and sustain biodiversity. We show how an evolutionary perspective to conserving biodiversity is fundamental to effective management. Finally, we advocate building frameworks for decision-making, monitoring, and implementation at the boundary between management and evolutionary science to enhance conservation outcomes.
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Affiliation(s)
- Thomas B. Smith
- Department of Ecology and Evolutionary Biology, University of California, Los Angeles, California 90095
- Institute of the Environment and Sustainability, University of California, Los Angeles, California 90095
| | | | - Sharon Y. Strauss
- Department of Evolution and Ecology and Center for Population Biology, University of California, Davis, California 95616
| | - Trevon L. Fuller
- Institute of the Environment and Sustainability, University of California, Los Angeles, California 90095
| | - Scott P. Carroll
- Department of Entomology, University of California and Institute for Contemporary Evolution, Davis, California 95616
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Carroll SP, Jørgensen PS, Kinnison MT, Bergstrom CT, Denison RF, Gluckman P, Smith TB, Strauss SY, Tabashnik BE. Applying evolutionary biology to address global challenges. Science 2014; 346:1245993. [PMID: 25213376 PMCID: PMC4245030 DOI: 10.1126/science.1245993] [Citation(s) in RCA: 153] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Two categories of evolutionary challenges result from escalating human impacts on the planet. The first arises from cancers, pathogens, and pests that evolve too quickly and the second, from the inability of many valued species to adapt quickly enough. Applied evolutionary biology provides a suite of strategies to address these global challenges that threaten human health, food security, and biodiversity. This Review highlights both progress and gaps in genetic, developmental, and environmental manipulations across the life sciences that either target the rate and direction of evolution or reduce the mismatch between organisms and human-altered environments. Increased development and application of these underused tools will be vital in meeting current and future targets for sustainable development.
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Affiliation(s)
- Scott P Carroll
- Department of Entomology, University of California, Davis, One Shields Avenue, Davis, CA 95616, USA. Institute for Contemporary Evolution, Davis, CA 95616, USA.
| | - Peter Søgaard Jørgensen
- Center for Macroecology, Evolution and Climate, Department of Biology, University of Copenhagen, 2100 Copenhagen, Denmark. Center for Macroecology, Evolution and Climate, Natural History Museum of Denmark, University of Copenhagen, 2100 Copenhagen, Denmark.
| | - Michael T Kinnison
- School of Biology and Ecology, University of Maine, Orono, ME 04469, USA
| | - Carl T Bergstrom
- Department of Biology, University of Washington, Seattle, WA 98195, USA
| | - R Ford Denison
- Department of Ecology, Evolution, and Behavior, University of Minnesota, Minneapolis, MN 55108, USA
| | - Peter Gluckman
- Centre for Human Evolution, Adaptation and Disease, Liggins Institute, University of Auckland, Auckland, New Zealand
| | - Thomas B Smith
- Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA. Center for Tropical Research, Institute of the Environment and Sustainability, University of California, Los Angeles, 619 Charles E. Young Drive East, Los Angeles, 90095-1496, CA
| | - Sharon Y Strauss
- Department of Evolution and Ecology and Center for Population Biology, University of California, Davis, One Shields Avenue, CA 95616, USA
| | - Bruce E Tabashnik
- Department of Entomology, University of Arizona, Tucson, AZ 85721, USA
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35
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Abstract
Human-induced trait change has been documented in freshwater, marine, and terrestrial ecosystems worldwide. These trait changes are driven by phenotypic plasticity and contemporary evolution. While efforts to manage human-induced trait change are beginning to receive some attention, managing its ecological consequences has received virtually none. Recent work suggests that contemporary trait change can have important effects on the dynamics of populations, communities, and ecosystems. Therefore, trait changes caused by human activity may be shaping ecological dynamics on a global scale. We present evidence for important ecological effects associated with human-induced trait change in a variety of study systems. These effects can occur over large spatial scales and impact system-wide processes such as trophic cascades. Importantly, the magnitude of these effects can be on par with those of traditional ecological drivers such as species presence. However, phenotypic change is not always an agent of ecological change; it can also buffer ecosystems against change. Determining the conditions under which phenotypic change may promote vs prevent ecological change should be a top research priority.
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Affiliation(s)
- Eric P Palkovacs
- Duke University Marine Laboratory Beaufort, NC, USA ; Nicholas School of the Environment, Duke University Durham, NC, USA
| | | | - Cristian Correa
- Redpath Museum and Department of Biology, McGill University Montreal, QC, Canada
| | - Christopher M Dalton
- Department of Ecology and Evolutionary Biology, Cornell University Ithaca, NY, USA
| | - Andrew P Hendry
- Redpath Museum and Department of Biology, McGill University Montreal, QC, Canada
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36
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Palkovacs EP, Kinnison MT, Correa C, Dalton CM, Hendry AP. Fates beyond traits: ecological consequences of human-induced trait change. Evol Appl 2011; 5:183-91. [PMID: 25568040 PMCID: PMC3353338 DOI: 10.1111/j.1752-4571.2011.00212.x] [Citation(s) in RCA: 187] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2011] [Accepted: 09/20/2011] [Indexed: 11/29/2022] Open
Abstract
Human-induced trait change has been documented in freshwater, marine, and terrestrial ecosystems worldwide. These trait changes are driven by phenotypic plasticity and contemporary evolution. While efforts to manage human-induced trait change are beginning to receive some attention, managing its ecological consequences has received virtually none. Recent work suggests that contemporary trait change can have important effects on the dynamics of populations, communities, and ecosystems. Therefore, trait changes caused by human activity may be shaping ecological dynamics on a global scale. We present evidence for important ecological effects associated with human-induced trait change in a variety of study systems. These effects can occur over large spatial scales and impact system-wide processes such as trophic cascades. Importantly, the magnitude of these effects can be on par with those of traditional ecological drivers such as species presence. However, phenotypic change is not always an agent of ecological change; it can also buffer ecosystems against change. Determining the conditions under which phenotypic change may promote vs prevent ecological change should be a top research priority.
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Affiliation(s)
- Eric P Palkovacs
- Duke University Marine Laboratory Beaufort, NC, USA ; Nicholas School of the Environment, Duke University Durham, NC, USA
| | | | - Cristian Correa
- Redpath Museum and Department of Biology, McGill University Montreal, QC, Canada
| | - Christopher M Dalton
- Department of Ecology and Evolutionary Biology, Cornell University Ithaca, NY, USA
| | - Andrew P Hendry
- Redpath Museum and Department of Biology, McGill University Montreal, QC, Canada
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37
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Kinnison MT, Quinn TP, Unwin MJ. Erratum: Correlated contemporary evolution of life-history traits in New Zealand Chinook salmon, Onchorhynchus tshawytscha. Heredity (Edinb) 2011. [DOI: 10.1038/hdy.2011.28] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
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38
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Palkovacs EP, Wasserman BA, Kinnison MT. Eco-evolutionary trophic dynamics: loss of top predators drives trophic evolution and ecology of prey. PLoS One 2011; 6:e18879. [PMID: 21526156 PMCID: PMC3079755 DOI: 10.1371/journal.pone.0018879] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2010] [Accepted: 03/11/2011] [Indexed: 11/18/2022] Open
Abstract
Ecosystems are being altered on a global scale by the extirpation of top predators. The ecological effects of predator removal have been investigated widely; however, predator removal can also change natural selection acting on prey, resulting in contemporary evolution. Here we tested the role of predator removal on the contemporary evolution of trophic traits in prey. We utilized a historical introduction experiment where Trinidadian guppies (Poecilia reticulata) were relocated from a site with predatory fishes to a site lacking predators. To assess the trophic consequences of predator release, we linked individual morphology (cranial, jaw, and body) to foraging performance. Our results show that predator release caused an increase in guppy density and a “sharpening” of guppy trophic traits, which enhanced food consumption rates. Predator release appears to have shifted natural selection away from predator escape ability and towards resource acquisition ability. Related diet and mesocosm studies suggest that this shift enhances the impact of guppies on lower trophic levels in a fashion nuanced by the omnivorous feeding ecology of the species. We conclude that extirpation of top predators may commonly select for enhanced feeding performance in prey, with important cascading consequences for communities and ecosystems.
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Affiliation(s)
- Eric P Palkovacs
- Duke University Marine Laboratory, Beaufort, North Carolina, United States of America.
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39
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Hendry AP, Kinnison MT, Heino M, Day T, Smith TB, Fitt G, Bergstrom CT, Oakeshott J, Jørgensen PS, Zalucki MP, Gilchrist G, Southerton S, Sih A, Strauss S, Denison RF, Carroll SP. Evolutionary principles and their practical application. Evol Appl 2011; 4:159-83. [PMID: 25567966 PMCID: PMC3352551 DOI: 10.1111/j.1752-4571.2010.00165.x] [Citation(s) in RCA: 202] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2010] [Accepted: 09/20/2010] [Indexed: 02/01/2023] Open
Abstract
Evolutionary principles are now routinely incorporated into medicine and agriculture. Examples include the design of treatments that slow the evolution of resistance by weeds, pests, and pathogens, and the design of breeding programs that maximize crop yield or quality. Evolutionary principles are also increasingly incorporated into conservation biology, natural resource management, and environmental science. Examples include the protection of small and isolated populations from inbreeding depression, the identification of key traits involved in adaptation to climate change, the design of harvesting regimes that minimize unwanted life-history evolution, and the setting of conservation priorities based on populations, species, or communities that harbor the greatest evolutionary diversity and potential. The adoption of evolutionary principles has proceeded somewhat independently in these different fields, even though the underlying fundamental concepts are the same. We explore these fundamental concepts under four main themes: variation, selection, connectivity, and eco-evolutionary dynamics. Within each theme, we present several key evolutionary principles and illustrate their use in addressing applied problems. We hope that the resulting primer of evolutionary concepts and their practical utility helps to advance a unified multidisciplinary field of applied evolutionary biology.
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Affiliation(s)
- Andrew P Hendry
- Redpath Museum and Department of Biology, McGill University Montreal, QC, Canada
| | | | - Mikko Heino
- Department of Biology, University of Bergen Bergen, Norway ; International Institute for Applied Systems Analysis Laxenburg, Austria ; Institute of Marine Research Bergen, Norway
| | - Troy Day
- Departments of Mathematics and Statistics and Biology, Queen's University Kingston, ON, Canada
| | - Thomas B Smith
- Center for Tropical Research, Institute of the Environment, University of California Los Angeles, CA, USA ; Department of Ecology and Evolutionary Biology, University of California Los Angeles, CA, USA
| | - Gary Fitt
- CSIRO Entomology and Cotton Catchment Communities CRC, Long Pocket Laboratories Indooroopilly, Qld, Australia
| | - Carl T Bergstrom
- Department of Biology, University of Washington Seattle, WA, USA
| | - John Oakeshott
- CSIRO Entomology, Black Mountain Canberra, ACT, Australia
| | - Peter S Jørgensen
- Center for Macroecology, Evolution and Climate, Department of Biology, University of Copenhagen Copenhagen, Denmark
| | - Myron P Zalucki
- School of Biological Sciences, The University of Queensland Brisbane, Qld, Australia
| | - George Gilchrist
- Division of Environmental Biology, National Science Foundation Arlington, VA, USA
| | | | - Andrew Sih
- Department of Environmental Science and Policy, University of California Davis, CA, USA
| | - Sharon Strauss
- Section of Evolution and Ecology, University of California Davis, CA, USA
| | - Robert F Denison
- Ecology Evolution and Behavior, University of Minnesota Saint Paul, MN, USA
| | - Scott P Carroll
- Institute for Contemporary Evolution Davis, CA, USA ; Department of Entomology, University of California Davis, CA, USA
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40
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Kinnison MT, Quinn TP, Unwin MJ. Correlated contemporary evolution of life history traits in New Zealand Chinook salmon, Oncorhynchus tshawytscha. Heredity (Edinb) 2011; 106:448-59. [PMID: 21224875 DOI: 10.1038/hdy.2010.162] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
Size at age and age at maturity are important life history traits, affecting individual fitness and population demography. In salmon and other organisms, size and growth rate are commonly considered cues for maturation and thus age at maturity may or may not evolve independently of these features. Recent concerns surrounding the potential phenotypic and demographic responses of populations facing anthropogenic disturbances, such as climate change and harvest, place a premium on understanding the evolutionary genetic basis for evolution in size at age and age at maturity. In this study, we present the findings from a set of common-garden rearing experiments that empirically assess the heritable basis of phenotypic divergence in size at age and age at maturity in Chinook salmon (Oncorhynchus tshawytscha) populations introduced to New Zealand. We found consistent evidence of heritable differences among populations in both size at age and age at maturity, often corresponding to patterns observed in the wild. Populations diverged in size and growth profiles, even when accounting for eventual age at maturation. By contrast, most, but not all, cases of divergence in age at maturity were driven by the differences in size or growth rate rather than differences in the threshold relationship linking growth rate and probability of maturation. These findings help us understand how life histories may evolve through trait interactions in populations exposed to natural and anthropogenic disturbances, and how we might best detect such evolution.
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Affiliation(s)
- M T Kinnison
- School of Biology and Ecology, University of Maine, Orono, ME 04473, USA.
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41
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Schwartz AK, Weese DJ, Bentzen P, Kinnison MT, Hendry AP. Both geography and ecology contribute to mating isolation in guppies. PLoS One 2010; 5:e15659. [PMID: 21179541 PMCID: PMC3002288 DOI: 10.1371/journal.pone.0015659] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2010] [Accepted: 11/19/2010] [Indexed: 11/24/2022] Open
Abstract
Local adaptation to different environments can promote mating isolation--either as an incidental by-product of trait divergence, or as a result of selection to avoid maladaptive mating. Numerous recent empirical examples point to the common influence of divergent natural selection on speciation based largely on evidence of strong pre-mating isolation between populations from different habitat types. Accumulating evidence for natural selection's influence on speciation is therefore no longer a challenge. The difficulty, rather, is in determining the mechanisms involved in the progress of adaptive divergence to speciation once barriers to gene flow are already present. Here, we present results of both laboratory and field experiments with Trinidadian guppies (Poecilia reticulata) from different environments, who do not show complete reproductive isolation despite adaptive divergence. We investigate patterns of mating isolation between populations that do and do not exchange migrants and show evidence for both by-product and reinforcement mechanisms depending on female ecology. Specifically, low-predation females discriminate against all high-predation males thus implying a by-product mechanism, whereas high-predation females only discriminate against low-predation males from further upstream in the same river, implying selection to avoid maladaptive mating. Our study thus confirms that mechanisms of adaptive speciation are not necessarily mutually exclusive and uncovers the complex ecology-geography interactions that underlie the evolution of mating isolation in nature.
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Affiliation(s)
- Amy K Schwartz
- Redpath Museum and Department of Biology, McGill University, Montreal, Canada.
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42
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Reed TE, Waples RS, Schindler DE, Hard JJ, Kinnison MT. Phenotypic plasticity and population viability: the importance of environmental predictability. Proc Biol Sci 2010; 277:3391-400. [PMID: 20554553 DOI: 10.1098/rspb.2010.0771] [Citation(s) in RCA: 263] [Impact Index Per Article: 18.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Phenotypic plasticity plays a key role in modulating how environmental variation influences population dynamics, but we have only rudimentary understanding of how plasticity interacts with the magnitude and predictability of environmental variation to affect population dynamics and persistence. We developed a stochastic individual-based model, in which phenotypes could respond to a temporally fluctuating environmental cue and fitness depended on the match between the phenotype and a randomly fluctuating trait optimum, to assess the absolute fitness and population dynamic consequences of plasticity under different levels of environmental stochasticity and cue reliability. When cue and optimum were tightly correlated, plasticity buffered absolute fitness from environmental variability, and population size remained high and relatively invariant. In contrast, when this correlation weakened and environmental variability was high, strong plasticity reduced population size, and populations with excessively strong plasticity had substantially greater extinction probability. Given that environments might become more variable and unpredictable in the future owing to anthropogenic influences, reaction norms that evolved under historic selective regimes could imperil populations in novel or changing environmental contexts. We suggest that demographic models (e.g. population viability analyses) would benefit from a more explicit consideration of how phenotypic plasticity influences population responses to environmental change.
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Affiliation(s)
- Thomas E Reed
- School of Aquatic and Fishery Sciences, University of Washington, Seattle, WA 98105, USA.
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43
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Bailey MM, Kinnison MT. Habitat-mediated size selection in endangered Atlantic salmon fry: selectional restoration assessment. Evol Appl 2010; 3:352-62. [PMID: 25567930 PMCID: PMC3352469 DOI: 10.1111/j.1752-4571.2010.00126.x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2010] [Accepted: 02/19/2010] [Indexed: 11/27/2022] Open
Abstract
Preservation of adaptive variation is a top priority of many species restoration programs, but most restoration activities are conducted without direct knowledge of selection that might foster or impair adaptation and restoration goals. In this study, we quantified geographic variation in selection on fry size of endangered Atlantic salmon (Salmo salar) during the 6-week period immediately following stocking in the wild. We also used a model selection approach to assess whether habitat variables influence patterns of such selection. We found evidence for significant size-selection in five out of six selection trials. Interestingly, the strength and pattern of selection varied extensively among sites, and model selection suggested that this variation in phenotypic selection was related to geographic variation in the presence of large woody debris and the slope of the stream gradient. The strong selection differentials we observed should be a concern for endangered salmon restoration, whether they reflect natural processes and an opportunity to maintain adaptation, or an indicator of the potentially deleterious phenotypic consequences of hatchery practices.
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Affiliation(s)
- Michael M Bailey
- School of Biology and Ecology, University of Maine Orono, ME, USA
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44
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Bailey MM, Lachapelle KA, Kinnison MT. Ontogenetic selection on hatchery salmon in the wild: natural selection on artificial phenotypes. Evol Appl 2010; 3:340-51. [PMID: 25567929 PMCID: PMC3352472 DOI: 10.1111/j.1752-4571.2009.00115.x] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2009] [Accepted: 12/07/2009] [Indexed: 11/29/2022] Open
Abstract
Captive rearing often alters the phenotypes of organisms that are destined for release into the wild. Natural selection on these unnatural phenotypes could have important consequences for the utility of captive rearing as a restoration approach. We show that normal hatchery practices significantly advance the development of endangered Atlantic salmon (Salmo salar) fry by 30+ days. As a result, hatchery fry might be expected to face strong natural selection resulting from their developmental asynchrony. We investigated patterns of ontogenetic selection acting on hatchery produced salmon fry by experimentally manipulating fry development stage at stocking. Contrary to simple predictions, we found evidence for strong stabilizing selection on the ontogeny of unfed hatchery fry, with weaker evidence for positive directional selection on the ontogeny of fed fry. These selection patterns suggest a seasonally independent tradeoff between abiotic or biotic selection favoring advanced development and physiological selection linked to risk of starvation in unfed fry. We show, through a heuristic exercise, how such selection on ontogeny may exacerbate problems in restoration efforts by impairing fry productivity and reducing effective population sizes by 13-81%.
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Affiliation(s)
- Michael M Bailey
- School of Biology and Ecology, University of Maine Orono, ME, USA
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45
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Weese DJ, Gordon SP, Hendry AP, Kinnison MT. Spatiotemporal variation in linear natural selection on body color in wild guppies (Poecilia reticulata). Evolution 2010; 64:1802-15. [PMID: 20067520 DOI: 10.1111/j.1558-5646.2010.00945.x] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We conducted 10 mark-recapture experiments in natural populations of Trinidadian guppies to test hypotheses concerning the role of viability selection in geographic patterns of male color variation. Previous work has reported that male guppies are more colorful in low-predation sites than in high-predation sites. This pattern of phenotypic variation has been theorized to reflect differences in the balance between natural (viability) selection that disfavors bright male color (owing to predation) and sexual selection that favors bright color (owing to female choice). Our results support the prediction that male color is disfavored by viability selection in both predation regimes. However, it does not support the prediction that viability selection against male color is weaker in low-predation experiments. Instead, some of the most intense bouts of selection against color occurred in low-predation experiments. Our results illustrate considerable spatiotemporal variation in selection among experiments, but such variation was not generally correlated with local patterns of color diversity. More complex selective interactions, possibly including the indirect effects of predators on variation in mating behavior, as well as other environmental factors, might be required to more fully explain patterns of secondary sexual trait variation in this system.
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Affiliation(s)
- Dylan J Weese
- School of Biology and Ecology, University of Maine, 5751 Murray Hall, Orono, Maine 04469, USA.
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46
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Bailey JK, Hendry AP, Kinnison MT, Post DM, Palkovacs EP, Pelletier F, Harmon LJ, Schweitzer JA. From genes to ecosystems: an emerging synthesis of eco-evolutionary dynamics. Symposium 7, 94th Ecological Society of America Meeting, Albuquerque, New Mexico, USA, August 2009. New Phytol 2009; 184:746-9. [PMID: 20021593 DOI: 10.1111/j.1469-8137.2009.03081.x] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Affiliation(s)
- Joseph K Bailey
- Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN 37996, USA.
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47
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Palkovacs EP, Marshall MC, Lamphere BA, Lynch BR, Weese DJ, Fraser DF, Reznick DN, Pringle CM, Kinnison MT. Experimental evaluation of evolution and coevolution as agents of ecosystem change in Trinidadian streams. Philos Trans R Soc Lond B Biol Sci 2009; 364:1617-28. [PMID: 19414475 DOI: 10.1098/rstb.2009.0016] [Citation(s) in RCA: 137] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023] Open
Abstract
Evolution has been shown to be a critical determinant of ecological processes in some systems, but its importance relative to traditional ecological effects is not well known. In addition, almost nothing is known about the role of coevolution in shaping ecosystem function. Here, we experimentally evaluated the relative effects of species invasion (a traditional ecological effect), evolution and coevolution on ecosystem processes in Trinidadian streams. We manipulated the presence and population-of-origin of two common fish species, the guppy (Poecilia reticulata) and the killifish (Rivulus hartii). We measured epilithic algal biomass and accrual, aquatic invertebrate biomass, and detrital decomposition. Our results show that, for some ecosystem responses, the effects of evolution and coevolution were larger than the effects of species invasion. Guppy evolution in response to alternative predation regimes significantly influenced algal biomass and accrual rates. Guppies from a high-predation site caused an increase in algae relative to guppies from a low-predation site; algae effects were probably shaped by observed divergence in rates of nutrient excretion and algae consumption. Rivulus-guppy coevolution significantly influenced the biomass of aquatic invertebrates. Locally coevolved populations reduced invertebrate biomass relative to non-coevolved populations. These results challenge the general assumption that intraspecific diversity is a less critical determinant of ecosystem function than is interspecific diversity. Given existing evidence for contemporary evolution in these fish species, our findings suggest considerable potential for eco-evolutionary feedbacks to operate as populations adapt to natural or anthropogenic perturbations.
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Affiliation(s)
- Eric P Palkovacs
- School of Biology and Ecology, University of Maine, Orono, ME 04469, USA.
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48
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Gordon SP, Reznick DN, Kinnison MT, Bryant MJ, Weese DJ, Räsänen K, Millar NP, Hendry AP. Adaptive changes in life history and survival following a new guppy introduction. Am Nat 2009; 174:34-45. [PMID: 19438322 DOI: 10.1086/599300] [Citation(s) in RCA: 70] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Numerous studies of wild populations have shown that phenotypic traits can change adaptively on short timescales, but very few studies have considered coincident changes in major fitness components. We here examine adaptive changes in life-history traits and survival rates for wild guppies introduced into new environments. Female life-history traits in the derived (Damier River) populations diverged from the ancestral (Yarra River) population, as a result of adaptation to predation regime (high vs. low) and other aspects of the local river. Moreover, some components of the derived Damier populations, particularly juveniles, now show higher survival in the Damier than do contemporary representatives from the ancestral Yarra population. These results suggest that adaptive change can improve survival rates after fewer than 10 years (fewer than 30 guppy generations) in a new environment.
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Affiliation(s)
- Swanne P Gordon
- Department of Biology, University of California, Riverside, California 92521, USA.
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Affiliation(s)
- Andrew P Hendry
- Redpath Museum and Department of Biology, McGill University, 859 Sherbrooke Street West, Montréal, QC, Canada H3A 2K6.
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Abstract
Although trait evolution over contemporary timescales is well documented, its influence on ecological dynamics in the wild has received much less attention particularly compared to traditional ecological and environmental factors. For example, evolution over ecologically relevant timescales is expected in populations that colonize new habitats, where it should theoretically enhance fitness, associated vital rates of survival and reproduction, and population growth potential. Nonetheless, success of exotic species is much more commonly attributed to ecological aspects of habitat quality and 'escape from enemies' in the invaded range. Here, we consider contemporary evolution of vital rates in introduced Chinook salmon (Oncorhynchus tshawytscha) that quickly colonized New Zealand and diverged over c. 26 generations. By using experimental translocations, we partitioned the roles of evolution and habitat quality in modifying geographical patterns of vital rates. Variation in habitat quality within the new range had the greatest influence on broad geographical patterns of vital rates, but locally adapted salmon still exhibited more than double the vital rate performance, and hence fitness, of nonlocal counterparts. The scope of this fitness evolution far exceeds the scale of divergence in trait values for these populations, or even the expected fitness effects of particular traits. These results suggest that contemporary evolution can be an important part of the eco-evolutionary dynamics of invasions and highlight the need for studies of the emergent fitness and ecological consequences of such evolution, rather than just changes in trait values.
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Affiliation(s)
- Michael T Kinnison
- School of Biology and Ecology, University of Maine, Orono, ME 04469, USA.
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