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Hayashi K, Hirayama J, Goldsmith CE, Coulter WA, Millar BC, Dooley JSG, Loughrey A, Rooney PJ, Matsuda M, Moore JE. Exposure to clinical X-ray radiation does not alter antibiotic susceptibility or genotype profile in Gram-negative and Gram-positive clinical pathogens. Br J Biomed Sci 2019. [DOI: 10.1080/09674845.2012.12069137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- K. Hayashi
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, Northern Ireland
- Laboratory for Molecular Biology, School of Environmental Health Sciences, Azabu University, 1-17-71 Fuchinobe, Sagamihara, Japan
| | - J. Hirayama
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, Northern Ireland
- Laboratory for Molecular Biology, School of Environmental Health Sciences, Azabu University, 1-17-71 Fuchinobe, Sagamihara, Japan
| | - C. E. Goldsmith
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, Northern Ireland
| | - W. A. Coulter
- School of Dentistry, The Queen's University of Belfast, Royal Group of Hospitals, Belfast
| | - B. C. Millar
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, Northern Ireland
| | - J. S. G. Dooley
- School of Biomedical Sciences, University of Ulster, Coleraine, Northern Ireland, UK
| | - A. Loughrey
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, Northern Ireland
| | - P. J. Rooney
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, Northern Ireland
| | - M. Matsuda
- Laboratory for Molecular Biology, School of Environmental Health Sciences, Azabu University, 1-17-71 Fuchinobe, Sagamihara, Japan
| | - J. E. Moore
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, Northern Ireland
- School of Biomedical Sciences, University of Ulster, Coleraine, Northern Ireland, UK
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Moore JE, Millar BC, Coulter WA, Mason C, Rooney PJ, Loughrey A, Goldsmith CE. Mining the antibiogram: what more can it tell us? Br J Biomed Sci 2018. [DOI: 10.1080/09674845.2012.12002441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- J. E. Moore
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast
- School of Biomedical Sciences, University of Ulster, Cromore Road, Coleraine
| | - B. C. Millar
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast
| | - W. A. Coulter
- School of Dentistry, Queen's University of Belfast, Royal Group of Hospitals, Belfast, Northern Ireland, UK
| | - C. Mason
- School of Dentistry, Queen's University of Belfast, Royal Group of Hospitals, Belfast, Northern Ireland, UK
| | - P. J. Rooney
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast
| | - A. Loughrey
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast
| | - C. E. Goldsmith
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast
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Mccarron A, Xu J, Armstrong C, Glynn G, Millar BC, Mcclurg RB, Han L, Goldsmith CE, Rooney PJ, Moore JE. Comparison of the identification of Acinetobacter spp. with API20NE and 16S rRNA gene sequencing techniques. Br J Biomed Sci 2018; 68:94-7. [DOI: 10.1080/09674845.2011.11978233] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- A.J. Mccarron
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, Northern Ireland
- School of Biomedical Sciences, Centre for Molecular Biosciences, University of Ulster, Coleraine, Northern Ireland
| | - J. Xu
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, Northern Ireland
- Department of Immunology and Pathogenic Biology, Molecular Bacteriology Laboratory, Key Laboratory of Environment and Genes related to Diseases of Chinese Ministry of Education, School of Medicine, Xi’an Jiaotong University, Xi’an, Shaanxi, People’s Republic of China, Northern Ireland
| | - C. Armstrong
- Department of Microbiology, Craigavon Area Hospital, Craigavon, Co. Armagh, Northern Ireland
| | - G. Glynn
- Department of Microbiology,, Altnagelvin Hospital, Glenshane Road, Londonderry, Co. Londonderry, Northern Ireland
| | - B. C. Millar
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, Northern Ireland
| | - R. B. Mcclurg
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, Northern Ireland
| | - L. Han
- Department of Immunology and Pathogenic Biology, Molecular Bacteriology Laboratory, Key Laboratory of Environment and Genes related to Diseases of Chinese Ministry of Education, School of Medicine, Xi’an Jiaotong University, Xi’an, Shaanxi, People’s Republic of China, Northern Ireland
| | - C. E. Goldsmith
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, Northern Ireland
| | - P. J. Rooney
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, Northern Ireland
| | - J. E. Moore
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, Northern Ireland
- School of Biomedical Sciences, Centre for Molecular Biosciences, University of Ulster, Coleraine, Northern Ireland
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Affiliation(s)
- D. M. Grennan
- Centre for Rheumatic Diseases and University Department of Medicine, Royal Infirmary, Glasgow
| | - P. J. Rooney
- Centre for Rheumatic Diseases and University Department of Medicine, Royal Infirmary, Glasgow
| | - E. Gilbertson
- Centre for Rheumatic Diseases and University Department of Medicine, Royal Infirmary, Glasgow
| | - W. C. Dick
- Centre for Rheumatic Diseases and University Department of Medicine, Royal Infirmary, Glasgow
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Affiliation(s)
- P. J. Rooney
- The Centre for Rheumatic Diseases and University Department of Medicine, Royal Infirmary, Glasgow and Institute of Clinical Sciences, Department of Medicine, The Queen's University, Belfast
| | - A. C. Kennedy
- The Centre for Rheumatic Diseases and University Department of Medicine, Royal Infirmary, Glasgow and Institute of Clinical Sciences, Department of Medicine, The Queen's University, Belfast
| | - J. R. Hayes
- The Centre for Rheumatic Diseases and University Department of Medicine, Royal Infirmary, Glasgow and Institute of Clinical Sciences, Department of Medicine, The Queen's University, Belfast
| | - K. D. Buchanan
- The Centre for Rheumatic Diseases and University Department of Medicine, Royal Infirmary, Glasgow and Institute of Clinical Sciences, Department of Medicine, The Queen's University, Belfast
| | - J. Webb
- The Centre for Rheumatic Diseases and University Department of Medicine, Royal Infirmary, Glasgow and Institute of Clinical Sciences, Department of Medicine, The Queen's University, Belfast
| | - P. Lee
- The Centre for Rheumatic Diseases and University Department of Medicine, Royal Infirmary, Glasgow and Institute of Clinical Sciences, Department of Medicine, The Queen's University, Belfast
| | - W. C. Dick
- The Centre for Rheumatic Diseases and University Department of Medicine, Royal Infirmary, Glasgow and Institute of Clinical Sciences, Department of Medicine, The Queen's University, Belfast
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Crothers JLD, Moore JE, Millar BC, Watabe M, Rooney PJ. Determination of verocytotoxin and eae gene loci by multiplex PCR in Escherichia coli O157:H7 isolated from human faeces in Northern Ireland: a four-year study of trends, 1997–2000. Br J Biomed Sci 2016; 61:1-7. [PMID: 15058735 DOI: 10.1080/09674845.2004.11732637] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
This study aims to determine the distribution and frequency of verocytotoxin genes in human faecal clinical isolates of Escherichia coli O157 in Northern Ireland during the period 1997-2000, using a special four-target multiplex polymerase chain reaction (PCR) assay. One hundred and thirty two isolates of E. coli O157:H7 cultured during the four-year period (1997 [n=28]; 1998 [n=25]); 1999 (n=43); 2000 [n=36]), representing approximately 79% of total E. coli O157 laboratory isolations throughout N. Ireland, are examined for the presence of verocytotoxin gene loci (VT1, VT2 and eae) using a multiplex PCR assay. These isolates originate from the four Regional Area Health Boards that constitute the healthcare system in N. Ireland as follows: Eastern (53.8%; n=71), Northern (34.1%; n=45), Western (6.8%; n=9) and Southern (5.3%; n=7). Results showed that over 80% of these isolates possessed the VT2 and eae gene loci, with the remainder being predominantly VT1-, VT2- and eae-positive. None possessed the VT1 gene locus alone. Development and adoption of this simple four-target (three virulence and one control gene loci) multiplex PCR assay and subsequent recording of resulting verocytotoxin-typing data in a database, permitted local, rapid determination of carriage of known molecular virulence determinants of E. coli O157 isolates, which may aid in outbreak-related epidemiological investigations or other longitudinal studies.
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Affiliation(s)
- J L D Crothers
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast BT9 7AD, UK
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Abstract
1 The pharmacokinetic and clinical effects of concurrent oral indomethacin and frusemide administration were determined in eight patients with rheumatoid arthritis. 2 Oral frusemide significantly reduces the plasma level of indomethacin following concurrent administration of the two drugs orally. 3 A profile of pain index, articular index and grip strength following oral indomethacin (50 mg) was determined and although the decrease in articular index was less when frusemide and indomethacin were given together it did not reach statistical significance.
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Affiliation(s)
- P M Brooks
- Centre for Rheumatic Diseases and University Department of Medicine, Royal Infirmary, Glasgow
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Hayashi K, Hirayama J, Goldsmith CE, Coulter WA, Millar BC, Dooley JSG, Loughrey A, Rooney PJ, Matsuda M, Moore JE. Exposure to clinical X-ray radiation does not alter antibiotic susceptibility or genotype profile in gram-negative and gram-positive clinical pathogens. Br J Biomed Sci 2012; 69:119-122. [PMID: 23057159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Inadvertent exposure of bacterial pathogens to X-ray radiation may be an environmental stress, where the bacterium may respond by increasing mutational events, thereby potentially resulting in increased antibiotic resistance and alteration to genotypic profile. In order to examine this, four clinical pathogens, including the Gram-negative organisms Escherichia coli O157:H7 NCTC12900 and Pseudomonas aeruginosa NCTC10662, as well as the Gram-positive organisms Staphylococcus aureus NCTC6571 and Enterococcus faecium were exposed to X-rays (35,495 cGy/cm2) over a seven-day period. Antibiotic susceptibility was assessed before, during and after exposure by examining susceptibility, as quantified by E-test with six antibiotics, as well as to a further 11 antibiotics by measurement of susceptibility zone sizes (mm). Additionally, the DNA profile of each organism was compared before, during and after exposure employing the enterobacterial repetitive intergenic consensus-polymerase chain reaction (ERIC PCR). Results indicated that exposure of these organisms to this amount of X-ray radiation did not alter their antibiotic susceptibility, nor their genomic DNA profile. Overall, these data indicate that exposure of bacteria to X-ray radiation does not alter the test organisms' antibiotic susceptibility profiles, nor alter genomic DNA profiles of bacteria, which therefore does not compromise molecular epidemiological tracking of bacteria within healthcare environments in which patients have been exposed to X-ray radiation.
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Affiliation(s)
- K Hayashi
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, Northern Ireland
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Moore JE, McCollum G, Murphy A, Millar BC, Nelson D, Goldsmith CE, Elborn JS, Loughrey A, Rooney PJ, Rao JR. Assessment of inhibition/growth-promoting properties of new agents on moulds: description of a simple bio-imaging technique. Br J Biomed Sci 2010; 67:145-6. [PMID: 20973410 DOI: 10.1080/09674845.2010.11730312] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- J E Moore
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Lisburn Road, Belfast, Northern Ireland, UK.
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Moore JE, Watabe M, Millar BC, Rooney PJ, Loughrey A, Goldsmith CE, McMahon MAS, McDowell DA, Murphy RG. Molecular characterisation of the recA locus in clinical isolates of verocytotoxigenic E. coli O157:H7. Br J Biomed Sci 2010; 66:37-41. [PMID: 19348125 DOI: 10.1080/09674845.2009.11730242] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
Molecular epidemiology of verocytoxigenic Escherichia coli O157:H7 is important to help elucidate reservoirs and modes of transmission, particularly between animals and humans. As the recA gene locus is now beginning to gain application in bacterial genotyping schemes, and as it has not been examined previously in E. coli O157 isolates, this study aims to examine potential polymorphic variation as a possible epidemiological marker for the subspecies characterisation of clinically significant verocytotoxigenic E. coli O157:H7. A novel polymerase chain reaction (PCR) assay was designed to target a 638 bp region of the recA gene in E. coli O157 isolates. The PCR amplification of genomic DNA from extracted organisms was able to generate an amplicon of the expected size (approximately 638 bp) for all E. coli O157:H7 examined (n=80), as well as for other non-O157 E. coli and other members of the Enterobacteriaeceae including Citrobacter, Hafnia, Shigella, Enterobacter and Providencia. Subsequent restriction fragment length polymorphism (RFLP) and single-stranded conformational polymorphism (SSCP) analyses of these recA amplicons were able to differentiate E. coli O157 from the organisms examined, but were unable to distinguish between 79 isolates of wild-type E. coli O157, suggesting a highly conserved recA gene structure within the local population of organisms examined.
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Affiliation(s)
- J E Moore
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Lisburn Road, Belfast, Ireland, UK.
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Moore JE, Millar BC, McMahon MAS, McDowell DA, Rooney PJ. Phenotypic diversity of Campylobacter isolates from sporadic cases of acute human gastroenteritis in Northern Ireland. Br J Biomed Sci 2010; 67:29-30. [PMID: 20373679 DOI: 10.1080/09674845.2010.11730286] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- J E Moore
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, Northern Ireland, UK.
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Maeda Y, Stanley T, Stirling J, Griffiths M, Calvert A, Stuart Elborn J, Cherie Millar B, Goldsmith CE, Rendall J, Loughrey A, Rooney PJ, Moore JE. No Evidence of Transmission of Bacteria Between Reptiles and a CF Patient - A Case Report of a Young Adult CF Patient and Reptiles. Zoonoses Public Health 2009; 57:e47-53. [DOI: 10.1111/j.1863-2378.2009.01293.x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Irvine WN, Gillespie IA, Smyth FB, Rooney PJ, McClenaghan A, Devine MJ, Tohani VK. Investigation of an outbreak of Salmonella enterica serovar Newport infection. Epidemiol Infect 2009; 137:1449-56. [PMID: 19296871 DOI: 10.1017/s0950268809002416] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
A large outbreak of Salmonella enterica serotype Newport infection occurred in Northern Ireland during September and October 2004. Typing of isolates from patients confirmed that this strain was indistinguishable from that in concurrent outbreaks in regions of England, in Scotland and in the Isle of Man. A total of 130 cases were distributed unequally across local government district areas in Northern Ireland. The epidemic curve suggested a continued exposure over about 4 weeks. A matched case-control study of 23 cases and 39 controls found a statistically significant association with a history of having eaten lettuce in a meal outside the home and being a case (odds ratio 23.7, 95% confidence interval 1.4-404.3). This exposure was reported by 57% of cases. Although over 300 food samples were tested, none yielded any Salmonella spp. Complexity and limited traceability in salad vegetable distribution hindered further investigation of the ultimate source of the outbreak.
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Affiliation(s)
- W N Irvine
- Communicable Disease Surveillance Centre Northern Ireland, McBrien Building, Belfast City Hospital, Lisburn Road, Belfast, UK.
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Moore JE, Watabe M, Millar BC, Rooney PJ, Loughrey A, Goldsmith CE. Direct molecular (PCR) detection of verocytotoxigenic and related virulence determinants (eae, hyl, stx) in E. coli O157:H7 from fresh faecal material. Br J Biomed Sci 2008; 65:163-5. [PMID: 18986109 DOI: 10.1080/09674845.2008.11978121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- J E Moore
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, Northern Ireland, UK.
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Donaldson H, McCalmont M, Livermore DM, Rooney PJ, Ong G, McHenry E, Campbell R, McMullan R. Evaluation of the VITEK 2 AST N-054 test card for the detection of extended-spectrum beta-lactamase production in Escherichia coli with CTX-M phenotypes. J Antimicrob Chemother 2008; 62:1015-7. [PMID: 18669518 DOI: 10.1093/jac/dkn316] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
OBJECTIVES A new VITEK 2 antibiotic susceptibility testing (AST) card, AST N-054, was introduced for aerobic gram-negative bacilli in 2007 and has been widely adopted for routine use in the UK. We evaluated its performance for detecting extended-spectrum beta-lactamase (ESBL) production in Escherichia coli. METHODS ESBL-producing faecal isolates of E. coli (n = 137) from residents in nursing homes were tested using the AST N-054 card on VITEK 2 and with MASTDISCS ID ESBL detection disc diffusion tests (Mast Diagnostics, Bootle, UK). The susceptibility result recommended by the VITEK 2 software was also recorded. RESULTS The AST N-054 card detected ESBL production in 93 of the 137 isolates tested [test sensitivity 67.9% (95% CI, 59.7-75.1)]. E. coli strain A, a widespread lineage in the UK with a low-level CTX-M enzyme production, accounted for most of the detection failures, with 35/73 strain A isolates incorrectly reported versus 9/64 non-strain A isolates (P < 0.0001). The MASTDISCS correctly detected ESBL in 135/137 isolates [test sensitivity 98.5% (95% CI, 94.5-99.9)]. Of the 44 isolates found to be negative for ESBL production by VITEK 2, the Advanced Expert System misreported 29 as susceptible to cefotaxime and all as susceptible to ceftazidime and aztreonam. CONCLUSIONS These data suggest that the AST N-054 card for the VITEK 2 system is less reliable than other previously reported cards for the detection of CTX-M beta-lactamase-producing E. coli circulating in the UK, particularly strain A isolates.
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Affiliation(s)
- H Donaldson
- Department of Microbiology, The Royal Group of Hospitals, Kelvin Building, Grosvenor Road, Belfast BT12 6BA, UK.
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Maeda Y, Millar BC, Loughrey A, McCalmont M, Nagano Y, Goldsmith CE, Rooney PJ, Moore JE. Community-associated meticillin-resistant Staphylococcus aureus: what are we missing? J Clin Pathol 2008; 61:876-7. [PMID: 18587023 DOI: 10.1136/jcp.2006.046011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Affiliation(s)
- Y Maeda
- Department of Bacteriology, Northern Ireland Public Health Laboratory, Belfast City Hospital, Belfast, Northern Ireland, UK
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Stirling J, Griffith M, Blair I, Cormican M, Dooley JSG, Goldsmith CE, Glover SG, Loughrey A, Lowery CJ, Matsuda M, McClurg R, McCorry K, McDowell D, McMahon A, Cherie Millar B, Nagano Y, Rao JR, Rooney PJ, Smyth M, Snelling WJ, Xu J, Moore JE. Prevalence of gastrointestinal bacterial pathogens in a population of zoo animals. Zoonoses Public Health 2008; 55:166-72. [PMID: 18331520 DOI: 10.1111/j.1863-2378.2007.01099.x] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
Faecal prevalence of gastrointestinal bacterial pathogens, including Campylobacter, Escherichia coli O157:H7, Salmonella, Shigella, Yersinia, as well as Arcobacter, were examined in 317 faecal specimens from 44 animal species in Belfast Zoological Gardens, during July-September 2006. Thermophilic campylobacters including Campylobacter jejuni, Campylobacter coli and Campylobacter lari, were the most frequently isolated pathogens, where members of this genus were isolated from 11 animal species (11 of 44; 25%). Yersinia spp. were isolated from seven animal species (seven of 44; 15.9%) and included, Yersinia enterocolitica (five of seven isolates; 71.4%) and one isolate each of Yersinia frederiksenii and Yersinia kristensenii. Only one isolate of Salmonella was obtained throughout the entire study, which was an isolate of Salmonella dublin (O 1,9,12: H g, p), originating from tiger faeces after enrichment. None of the animal species found in public contact areas of the zoo were positive for any gastrointestinal bacterial pathogens. Also, water from the lake in the centre of the grounds, was examined for the same bacterial pathogens and was found to contain C. jejuni. This study is the first report on the isolation of a number of important bacterial pathogens from a variety of novel host species, C. jejuni from the red kangaroo (Macropus rufus), C. lari from a maned wolf (Chrysocyon brachyurus), Y. kristensenii from a vicugna (Vicugna vicugna) and Y. enterocolitica from a maned wolf and red panda (Ailurus fulgens). In conclusion, this study demonstrated that the faeces of animals in public contact areas of the zoo were not positive for the bacterial gastrointestinal pathogens examined. This is reassuring for the public health of visitors, particularly children, who enjoy this educational and recreational resource.
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Affiliation(s)
- J Stirling
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Lisburn Road, Belfast BT9 7AD, Northern Ireland
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18
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Nagano Y, Watabe M, Porter KG, Coulter WA, Millar BC, Elborn JS, Goldsmith CE, Rooney PJ, Loughrey A, Moore JE. Development of a genus-specific PCR assay for the molecular detection, confirmation and identification of Fusobacterium spp. Br J Biomed Sci 2007; 64:74-7. [PMID: 17633142 DOI: 10.1080/09674845.2007.11732760] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
A genus-specific polymerase chain reaction (PCR)-based assay is developed for the detection and identification of clinically relevant Fusobacterium species, including F. nucleatum and F. necrophorum. Two 16S ribosomal DNA (rDNA) primers, FUSO1 (forward primer: 5'-GAG AGA GCT TTG CGT CC-3' [17-mer]) and FUSO 2 (reverse primer: 5'-TGG GCG CTG AGG TTC GAC -3' [18-mer]) are designed to target conserved regions of the 16S rDNA gene for Fusobacterium spp. Subsequent proof-of-principle studies employing this assay detected Fusobacterium spp. in the faeces of eight (10%) out of 80 patients with suspected gastrointestinal infection. This assay may be used for the genus-specific detection of Fusobacterium spp. from clinical specimens and for subsequent species identification.
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Affiliation(s)
- Y Nagano
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, UK
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19
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McMullan R, Edwards PJ, Kelly MJ, Millar BC, Rooney PJ, Moore JE. Food-poisoning and commercial air travel. Travel Med Infect Dis 2007; 5:276-86. [PMID: 17870632 DOI: 10.1016/j.tmaid.2007.06.002] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2007] [Accepted: 06/07/2007] [Indexed: 11/30/2022]
Abstract
With the introduction of budget airlines and greater competitiveness amongst all airlines, air travel has now become an extremely popular form of travel, presenting its own unique set of risks from food poisoning. Foodborne illness associated with air travel is quite uncommon in the modern era. However, when it occurs, it may have serious implications for passengers and when crew are affected, has the potential to threaten safety. Quality, safe, in-flight catering relies on high standards of food preparation and storage; this applies at the airport kitchens (or at subcontractors' facilities), on the aircraft and in the transportation vehicles which carry the food from the ground source to the aircraft. This is especially challenging in certain countries. Several foodborne outbreaks have been recorded by the airline industry as a result of a number of different failures of these systems. These have provided an opportunity to learn from past mistakes and current practice has, therefore, reached such a standard so as to minimise risk of failures of this kind. This review examines: (i) the origin of food safety in modern commercial aviation; (ii) outbreaks which have occurred previously relating to aviation travel; (iii) the microbiological quality of food and water on board commercial aircraft; and (iv) how Hazard Analysis Critical Control Points may be employed to maintain food safety in aviation travel.
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Affiliation(s)
- R McMullan
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Lisburn Road, Belfast BT9 7AD, Northern Ireland, UK
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Snelling WJ, Rooney PJ, Lowery CJ, Dooley JSG, Rao JR, Millar BC, Sunnotel O, Xiao L, Buckley T, Kenny F, Nicholson V, Moore JE. Improved monitoring of water-associated cryptosporidiosis in Ireland. Ir Med J 2007; 100:454-5. [PMID: 17727118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
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21
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Nagano Y, Finn MB, Lowery CJ, Murphy T, Moriarty J, Power E, Toolan D, O'Loughlin A, Watabe M, McCorry KA, Crothers E, Dooley JSG, Rao JR, Rooney PJ, Millar BC, Matsuda M, Elborn JS, Moore JE. Occurrence of Cryptosporidium parvum and bacterial pathogens in faecal material in the red fox (Vulpes vulpes) population. Vet Res Commun 2007; 31:559-64. [PMID: 17225081 DOI: 10.1007/s11259-007-3519-1] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/31/2006] [Indexed: 11/28/2022]
Affiliation(s)
- Y Nagano
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, UK
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Shigematsu M, Nagano Y, Millar BC, Kenny F, Lowery CJ, Xiao L, Rao JR, Nicholson V, Watabe M, Heaney N, Sunnotel O, McCorry K, Rooney PJ, Snelling W, Dooley JSG, Elborn JS, Matsuda M, Moore JE. Molecular detection and identification of Cryptosporidium species in lettuce employing nested small-subunit rRNA PCR and direct automated sequencing. Br J Biomed Sci 2007; 64:133-5. [PMID: 17910286 DOI: 10.1080/09674845.2007.11978102] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- M Shigematsu
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, Northern Ireland
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Xu J, Smyth CL, Buchanan JA, Dolan A, Rooney PJ, Millar BC, Goldsmith CE, Elborn JS, Moore JE. Employment of 16 S rDNA gene sequencing techniques to identify culturable environmental eubacteria in a tertiary referral hospital. J Hosp Infect 2006; 57:52-8. [PMID: 15142716 DOI: 10.1016/j.jhin.2004.01.011] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2003] [Accepted: 01/07/2004] [Indexed: 11/26/2022]
Abstract
Universal or 'broad-range' eubacterial polymerase chain reaction (PCR) was performed on 53 isolates from environmental water-associated sites in a haematology unit (N = 22) and the outer surfaces of cleaning lotion containers sited throughout a tertiary referral hospital (N = 31) 16 S rDNA PCR was performed using two sets of universal primers, including the novel reverse primer, XB4, to generate a composite amplicon of 1068 bp, which was sequenced to obtain each isolate's identity. Sequence analysis was able to identify 51 isolates. Most (75% from the haematology unit and 81% from cleaner containers) were Gram-positive. Nine different genera were identified from the haematology unit and 13 from the cleaning lotion containers. This study provides the first reports of Terrabacter spp. and Brachybacterium paraconglomeratum isolated from a hospital environment. As unusual and difficult-to-identify environmental organisms are unlikely to be clinically significant, and molecular identification is costly and labour-intensive, we recommend that molecular methods are only used as an adjunct to first-line phenotypic identification schemes where a definitive identification is required. Where molecular identification methods are justified, partial 16 S rDNA PCR and sequencing employing the novel universal primer XB4, is a valuable and reliable technique.
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Affiliation(s)
- J Xu
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Northern Ireland, UK
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Abstract
This review discusses characteristics of the genus Cryptosporidium and addresses the pathogenesis, reservoirs, public health significance and current applications for the detection and typing of this important pathogen. By increasing knowledge in key areas of Cryptosporidium research such as aetiology, epidemiology, transmission and host interactions, the numbers of cases of human cryptosporidiosis should be reduced.
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Affiliation(s)
- O Sunnotel
- Centre for Molecular Biosciences, School of Biomedical Sciences, University of Ulster, Coleraine, Co., Londonderry, UK
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25
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Elshibly S, Doherty J, Xu J, McClurg RB, Rooney PJ, Millar BC, Shah H, Morris TCM, Alexander HD, Moore JE. Central line-related bacteraemia due to Tsukamurella tyrosinosolvens in a haematology patient. Ulster Med J 2005; 74:43-6. [PMID: 16022132 PMCID: PMC2475478] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Rao D, Rao JR, Crothers E, McMullan R, McDowell D, McMahon A, Rooney PJ, Millar BC, Moore JE. Increased erythromycin resistance in clinical Campylobacter in Northern Ireland—an update. J Antimicrob Chemother 2005; 55:395-6. [PMID: 15681584 DOI: 10.1093/jac/dkh552] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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27
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Asulin Y, McCann TJ, McCarty CW, Hage RW, Rooney PJ, Macpherson CNL. Cancer incidence and mortality in Grenada 1990-2000. W INDIAN MED J 2004; 53:368-73. [PMID: 15816262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
This paper summarizes and discusses the available cancer incidence (1996-2000) and mortality data (1990-2000) for the tri-island Caribbean nation of Grenada, Carriacou and Petit Martinique. Data for the analysis came from three sources: the Grenada Department of Statistics, the histopathology specimen books from St George's General Hospital and the Death Registry of the Ministry of Health, Grenada. The age-standardized rates (ASR) per 100 000 for all cancer sites combined were 170.2 in females and 158.2 in males. The four most frequent diagnoses (ASR) by cancer site in females were cervix (60.7), breast (49.1), uterus (28.4) and skin (13.3); and among males, prostate (61.4), bladder (16.3), skin (19.3) and stomach (10). Age-standardized mortality rates per 100 000 for all cancer sites combined were 105.4 in females and 165 in males. The four most frequent cancer associated mortalities (ASR) in females were breast (17.9), uterus (11.2), colon (10.3) and cervix (9.7); and among males, prostate (53.6), lung (18.7), stomach (14.5) and colon (10.9). This study found statistically significant spatial trends for overall cancer mortality and temporal trends in incidence and mortality rates for prostate and for incidence rates of stomach cancer. These rates are compared with those from other areas in the Caribbean and the United States of America and encourage efforts to establish a cancer registry in Grenada.
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Affiliation(s)
- Y Asulin
- School of Medicine, Department of Public Health and Preventive Medicine, Windward Islands Research and Education Foundation, St George's University, PO Box 7, St George's, Grenada, West Indies
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Coyle VM, McMullan R, Morris TCM, Rooney PJ, Hedderwick S. Catheter-related bloodstream infection in adult haematology patients: catheter removal practice and outcome. J Hosp Infect 2004; 57:325-31. [PMID: 15262394 DOI: 10.1016/j.jhin.2004.04.007] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2003] [Accepted: 04/01/2004] [Indexed: 11/16/2022]
Abstract
The aim of the present study was to describe the practice of central venous catheter (CVC) removal and outcomes of catheter-related bloodstream infection (CR-BSI) in adult haematology patients. Patients were identified retrospectively according to diagnosis coding of inpatient episodes and evaluated when, on examination of medical records, there had been evidence of sepsis with strong clinical suspicion that the source was the CVC. Demographic and bacteriological data, as well as therapeutic measures and clinical outcomes, were recorded. One hundred and three patient episodes were evaluated. The most frequent type of CVC was the Hickman catheter and the most frequently isolated pathogen was coagulase-negative staphylococci. Twenty-five percent of episodes were managed with catheter removal. Treatment failure, defined as recurrence of infection within 90 days or mortality attributed to sepsis within 30 days, occurred significantly more frequently in the group managed without catheter removal (52.5% versus 4%, P < 0.05). Specifically, 90-day recurrence was more common when the catheter was retained (46% versus 0%). However the difference in 30-day attributable mortality (7% versus 4%) was not significantly different. Notably, no significant difference between the two groups emerged in respect of other measured characteristics that had been considered as potential determinants of outcome. More frequent CVC removal for CR-BSI, in this population, should be considered. Management of CR-BSI without catheter removal is associated with treatment failure, morbidity and carries significant resource implications.
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Affiliation(s)
- V M Coyle
- Department of Haematology, Belfast City Hospital, Lisburn Road, Belfast, Northern Ireland, UK
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Jugo J, Kennedy R, Crowe MJ, Lamrock G, McClurg RB, Rooney PJ, Morris TCM, Johnston PG. Trends in bacteraemia on the haematology and oncology units of a UK tertiary referral hospital. J Hosp Infect 2002; 50:48-55. [PMID: 11825052 DOI: 10.1053/jhin.2001.1101] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
As part of ongoing surveillance of infection in the haematology and oncology units at Belfast City Hospital, microbiologically documented bloodstream infections over three 12-month periods 1994/5, 1998/9 and 1999/00 were reviewed. Gram-positive organisms were the most common cause of blood stream infection in the haematology unit causing 66%, 56% and 64% of episodes of monomicrobial bacteraemia in 1994/5, 1998/9 and 1999/00, respectively. In haematology patients, enterococci have emerged as an important cause of bacteraemia, with increasing levels of glycopeptide resistance, and the 'non-fermenting Gram-negative rods other than Pseudomonas aeruginosa' are an increasingly common cause of monomicrobial and polymicrobial bacteraemia. In oncology patients, Gram-negative organisms (predominantly enterobacteriaceae) were more common than Gram-positive organisms, causing 50% and 54% of monomicrobial bacteraemia in 1998/9 and 1999/00, respectively. Changes in patient population, underlying diseases and chemotherapeutic agents may explain these findings. The spectrum of infection seen in haematology and oncology patients changes as management evolves. Ongoing co-operation between haematologists, oncologists and microbiologists is important to detect trends in epidemiology, which can be used to design empirical antibiotic regimens and guide infection control policies.
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Affiliation(s)
- J Jugo
- Department of Microbiology,Belfast Link Laboratories, Belfast City Hospital, Belfast City Hospital Trust, UK
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Lowery CJ, Moore JE, Millar BC, McCorry KA, Xu J, Rooney PJ, Dooley JS. Occurrence and molecular genotyping of Cryptosporidium spp. in surface waters in Northern Ireland. J Appl Microbiol 2001; 91:774-9. [PMID: 11722653 DOI: 10.1046/j.1365-2672.2001.01440.x] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
AIMS To investigate the incidence and genotype of Cryptosporidium parvum oocysts in drinking water sources in Northern Ireland for the period 1996-1999, and to compare conventional and molecular methods of detection. METHODS AND RESULTS Four hundred and seventy-four waters were investigated by conventional methods, namely immuno-fluorescent antibody detection (IFA; 380) and immuno-magnetic separation-IFA (IMS-IFA; 94), of which 14/474 (3%) were positive. Two hundred and fourteen samples (214/474) were also investigated by PCR techniques, targeting both the 18S rRNA and TRAP-C2 genes, of which 11/214 (5.1%) were positive. These 11 samples were classified as genotype II following sequence analysis of the TRAP-C2 amplicon. CONCLUSIONS This study demonstrated the low incidence of oocysts of C. parvum in water sources in Northern Ireland. SIGNIFICANCE AND IMPACT OF THE STUDY Such molecular-based techniques offer a number of advantages over conventional detection methodologies, namely greater sensitivity and specificity as well as the ability to provide accurate genotyping data rapidly, which may be valuable in directing operational management in potential outbreak situations.
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Affiliation(s)
- C J Lowery
- Northern Ireland Public Health Laboratory, Belfast, UK
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31
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Lowery CJ, Millar BC, Moore JE, Xu J, Xiao L, Rooney PJ, Crothers L, Dooley JS. Molecular genotyping of human cryptosporidiosis in Northern Ireland: epidemiological aspects and review. Ir J Med Sci 2001; 170:246-50. [PMID: 11918331 DOI: 10.1007/bf03167789] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
BACKGROUND Cryptosporidium parvum is the most common of the protozoal pathogens associated with gastrointestinal disease in Northern Ireland. Genotyping techniques are valuable in helping to elucidate sources and modes of transmission of this parasite. There have been no reports on the prevalence of genotypes in Northern Ireland, mainly due to a lack of discriminatory genotyping techniques, which recently have become available. AIM To investigate the genotype of C. parvum oocysts isolated from human faeces in sporadic cases of cryptosporidiosis in Northern Ireland. METHODS Thirty-nine isolates of C. parvum, representing 79.6% of the total 1998 laboratory reports for the Eastern Health and Social Services Board, were investigated. Following DNA extraction from oocysts the thrombospondin-related adhesive protein 2 (TRAP-C2) locus was amplified by polymerase chain reaction (PCR) and subsequently sequenced. RESULTS The majority of isolates (87.2%) were classified as bovine genotype II with the remainder (12.8%) being the human genotype I. CONCLUSIONS There is a high prevalence of the bovine genotype II parasite in sporadic cases around the greater Belfast area. Epidemiologically, this suggests that the most frequent mode of transmission may be from animals to humans, but does not suggest a high proportion of human to human spread.
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Affiliation(s)
- C J Lowery
- Department of Bacteriology, Belfast City Hospital, School of Biological and Environmental Sciences, Faculty of Life and Health Sciences, University of Ulster, Coleraine, Northern Ireland
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Rooney PJ, Sullivan TD, Klein BS. Selective expression of the virulence factor BAD1 upon morphogenesis to the pathogenic yeast form of Blastomyces dermatitidis: evidence for transcriptional regulation by a conserved mechanism. Mol Microbiol 2001; 39:875-89. [PMID: 11251809 DOI: 10.1046/j.1365-2958.2001.02300.x] [Citation(s) in RCA: 43] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Most dimorphic fungal pathogens grow as non-pathogenic moulds in soil and convert to pathogenic yeast in the host, suggesting that virulence factors are upregulated during phase transition. Such factors have been difficult to identify. We analysed BAD1 (formerly WI-1), a virulence factor in the dimorphic fungus Blastomyces dermatitidis, for expression in yeast and mycelial morphotypes. BAD1 was expressed in yeast but not in mycelia of North American strains of B. dermatitidis, and this expression pattern was confirmed for BAD1 transcript. BAD1 under the control of its promoter was transferred into African B. dermatitidis lacking a native BAD1 locus, and phase-specific expression was conserved. Sequence similarity was identified between the BAD1 promoter and the promoters of two yeast phase-specific genes in Histoplasma capsulatum. In H. capsulatum BAD1 transformants, yeast phase-specific expression of BAD1 was conserved, and no transcript was detected in mycelia. BAD1 beta-galactosidase reporter fusions analysed in B. dermatitidis and H. capsulatum confirmed that BAD1 is transcriptionally regulated in both fungi. BAD1 promoter activity and surface BAD1 expression were detected 6 h after shifting mycelia to 37 degrees C. Thus, BAD1 is expressed after transition to the pathogenic yeast morphotype and is regulated by a mechanism for phase-specific gene expression that appears to be conserved.
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Affiliation(s)
- P J Rooney
- Department of Medical Microbiology and Immunology, the Comprehensive Cancer Center, University of Wisconsin Medical School, 600 Highland Ave., K4/434, Madison, WI 53792, USA
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Goodacre R, Rooney PJ, Kell DB. Discrimination between methicillin-resistant and methicillin-susceptible Staphylococcus aureus using pyrolysis mass spectrometry and artificial neural networks. J Antimicrob Chemother 1998; 41:27-34. [PMID: 9511034 DOI: 10.1093/jac/41.1.27] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Abstract
Curie-point pyrolysis mass spectra were obtained from 15 methicillin-resistant and 22 methicillin-susceptible Staphylococcus aureus strains. Cluster analysis showed that the major source of variation between the pyrolysis mass spectra resulted from the phage group of the bacteria, not their resistance or susceptibility to methicillin. By contrast, artificial neural networks could be trained to recognize those aspects of the pyrolysis mass spectra that differentiated methicillin-resistant from methicillin-sensitive strains. The trained neural network could then use pyrolysis mass spectral data to assess whether an unknown strain was resistant to methicillin. These results give the first demonstration that the combination of pyrolysis mass spectrometry with neural networks can provide a very rapid and accurate antibiotic susceptibility testing technique.
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Affiliation(s)
- R Goodacre
- Institute of Biological Sciences, University of Wales, Aberystwyth, UK.
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Goodacre R, Timmins EM, Rooney PJ, Rowland JJ, Kell DB. Rapid identification of Streptococcus and Enterococcus species using diffuse reflectance-absorbance Fourier transform infrared spectroscopy and artificial neural networks. FEMS Microbiol Lett 1996; 140:233-9. [PMID: 8764485 DOI: 10.1016/0378-1097(96)00186-3] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Abstract
Diffuse reflectance-absorbance Fourier transform infrared spectroscopy (FT-IR) was used to analyse 19 hospital isolates which had been identified by conventional means to one Enterococcus faecalis, E. faecium, Streptococcus bovis, S. mitis, S. pneumoniae, or S. pyogenes. Principal components analysis of the FT-IR spectra showed that this 'unsupervised' learning method failed to form six separable clusters (one of each species) and thus could not be used to identify these bacteria base on their FT-IR spectra. By contrast, artificial neural networks (ANNs) could be trained by 'supervised' learning (using the back-propagation algorithm) with the principal components scores of derivatised spectra to recognise the strains from their FT-IR spectra. These results demonstrate that the combination of FT-IR and ANNs provides a rapid, novel and accurate bacterial identification technique.
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Affiliation(s)
- R Goodacre
- Institute of Biological Sciences, University of Wales, Aberystwyth, UK.
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35
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Rooney PJ. Osteoarthritis and overweight. J Rheumatol Suppl 1995; 22:2006. [PMID: 8992010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
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Rooney PJ, Buchanan WW, MacNeil AL. Robert Fergusson (1751-74): a diagnostic enigma. Proc R Coll Physicians Edinb 1995; 25:476-86. [PMID: 11639754] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/22/2023]
Affiliation(s)
- P J Rooney
- McMaster University, Hamilton, Ontario Canada
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Affiliation(s)
- G Georgiev
- University of the West Indies, St Augustine, Trinidad
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Rooney PJ. Cervical neuropathology in rheumatoid arthritis. Ann Rheum Dis 1994; 53:284-5. [PMID: 8203966 PMCID: PMC1005318 DOI: 10.1136/ard.53.4.284-b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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39
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Rooney PJ. Does methotrexate retard radiologic progression of rheumatoid arthritis? Arthritis Rheum 1992; 35:1248-9. [PMID: 1418011 DOI: 10.1002/art.1780351021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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40
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Fargas-Babjak AM, Pomeranz B, Rooney PJ. Acupuncture-like stimulation with codetron for rehabilitation of patients with chronic pain syndrome and osteoarthritis. ACUPUNCTURE ELECTRO 1992; 17:95-105. [PMID: 1353654 DOI: 10.3727/036012992816357828] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Acupuncture is one of the oldest healing methods which is used in traditional medicine. In the modern medicine, we are witnessing a renaissance of this ancient treatment applied mainly in the management of chronic pain. A number of modern technological changes are being applied to replace, or modify, the classical needle treatment. Among many modalities used today is the novel addition in Transcutaneous Electrical Nerve Stimulation (TENS) called CODETRON which delivers acupuncture-like stimulation in a random order. CODETRON was developed by a Canadian Scientist and had been evaluated in a clinical trial in a multidisciplinary pain clinic on patients who came for acupuncture therapy over a period of two years. Indications, effectiveness and experiences with this form of treatment are presented. In addition, results obtained from a six week double-blind randomized placebo controlled pilot trial of osteoarthritis of the hip/knee with CODETRON which was conducted later. The results were highly suggestive of the beneficial effect of this nonhabituating mode of therapy and confirmed our initial uncontrolled trial results.
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Affiliation(s)
- A M Fargas-Babjak
- Department of Anaesthesia, McMaster University, Hamilton, Ontario, Canada
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41
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Rooney PJ. Playing God--revisited. Ann Intern Med 1992; 116:1036; author reply 1036-7. [PMID: 1586103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
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Abstract
An epidemic of hepatitis A took place in Northern Ireland between 1984 and 1990. All ages of persons and geographical areas were involved. Children aged 5-14 years with Belfast addresses were particularly affected. Serologically confirmed cases in this group rose from five cases in 1984 to 93 cases in 1987 and fell to 19 cases in 1990. Of 100 samples of serum of Belfast children aged 5-14 years in late 1985, 23 were hepatitis A IgG positive, 95% confidence limits being 15.2-32.5. Of 100 similar children in late 1989, 19 were hepatitis A IgG positive, 95% confidence limits being 11.8-28.1. Thus a substantial rise in herd immunity may not be necessary for the ending of such an epidemic in a society with good housing and sanitation.
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Affiliation(s)
- P J Rooney
- Regional Virus Laboratory, Royal Victoria Hospital, Belfast, Northern Ireland, U.K
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43
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Rooney PJ, Bjarnason I. NSAID gastropathy--not just a pain in the gut! J Rheumatol 1991; 18:796-8. [PMID: 1895257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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Flanagan PG, Rooney PJ, Davies EA, Stout RW. A comparison of single-dose versus conventional-dose antibiotic treatment of bacteriuria in elderly women. Age Ageing 1991; 20:206-11. [PMID: 1853794 DOI: 10.1093/ageing/20.3.206] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
The efficacy of single-dose antibiotic therapy for the treatment of bacteriuria in a group of non-catheterized elderly women was compared with that of conventional 7-10 day courses of antibiotic therapy. Thirty-one women received single-dose treatment and 22 conventional-dose treatment. The cure rates at 1 and 6 weeks for the single-dose treatments were 52% and 38%, respectively, and the cure rates for the conventional-dose treatments at 1 and 6 weeks were 59% and 52%, respectively. It is concluded that there may be a place for the use of single-dose antibiotic therapy for the treatment of selected elderly women with bacteriuria, but larger studies are needed.
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Affiliation(s)
- P G Flanagan
- Department of Geriatric Medicine, Queen's University, Belfast
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46
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Abstract
This review presents up-to-date information on many unusual causes of musculoskeletal disorders. These disorders are grouped together because in each there is abnormal accumulation of normal materials or accumulation of abnormal materials in cells or interstitial tissues. Most of these conditions or their associated musculoskeletal manifestations are rare. However, they may present to the adult or pediatric rheumatologist for diagnosis or therapy or both. Gout, because of its prevalence, has been excluded from this review, but it is included briefly in the discussion of the specific arthritides associated with hyperlipidemias. Disorders associated with abnormal lipid storage in which bone and joint pathology occur frequently include Gaucher's disease, histiocytosis-X, and multicentric reticulohistiocytosis. The rarer disorders of this type discussed are Fabry's disease, sea-blue histiocytosis, and Farber's disease. The abnormal accumulation of metal ions in hemochromatosis and in Wilson's disease are probably causative, either directly or indirectly, in the musculoskeletal features of these diseases, while in ochronosis, calcium crystal deposition accompanies the cartilage degradation characteristic of this disease.
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Affiliation(s)
- P J Rooney
- McMaster University, Hamilton, Ontario, Canada
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47
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Rooney PJ, Hunt RH. The risk of upper gastrointestinal haemorrhage during steroidal and non-steroidal anti-inflammatory therapy. Baillieres Clin Rheumatol 1990; 4:207-17. [PMID: 2032297 DOI: 10.1016/s0950-3579(05)80018-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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Rooney PJ, Buchanan WW. Measure of relative value of drugs in RA. J Rheumatol 1990; 17:979. [PMID: 2213768] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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Gerecz-Simon E, Soper WY, Kean WF, Rooney PJ, Tugwell P, Buchanan WW. A controlled comparison of piroxicam and diclofenac in patients with osteoarthritis. Clin Rheumatol 1990; 9:229-34. [PMID: 2202544 DOI: 10.1007/bf02031974] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Eighty patients with osteoarthritis were randomly assigned to either piroxicam (20 mg daily) or diclofenac (75-150 mg daily) in a 12-week double-blind, parallel groups study. In the 70 patients who completed the study, both medications were effective; statistically significant improvement was observed on all assessments of efficacy. However, no statistically significant differences between the two drugs were seen on any of the efficacy parameters measured. There was a trend towards better tolerance in the piroxicam treated patients, although this was not statistically significant; 3 of the 40 piroxicam treated patients versus 6 of the 40 patients on diclofenac were discontinued from the trial due to intolerable adverse events.
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Affiliation(s)
- E Gerecz-Simon
- Rheumatic Disease Unit, McMaster University Health Sciences Centre, Hamilton, Ontario, Canada
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Rooney PJ, Jenkins RT. Nonsteroidal antiinflammatory drugs (NSAID's) and the bowel mucosa: changes in intestinal permeability may not be due to changes in prostaglandins. Clin Exp Rheumatol 1990; 8:328-9. [PMID: 2116253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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