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Soriano-Redondo A, Correia RA, Barve V, Brooks TM, Butchart SHM, Jarić I, Kulkarni R, Ladle RJ, Vaz AS, Di Minin E. Harnessing online digital data in biodiversity monitoring. PLoS Biol 2024; 22:e3002497. [PMID: 38358955 PMCID: PMC10868793 DOI: 10.1371/journal.pbio.3002497] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2024] Open
Abstract
Online digital data from media platforms have the potential to complement biodiversity monitoring efforts. We propose a strategy for integrating these data into current biodiversity datasets in light of the Kunming-Montreal Global Biodiversity Framework.
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Affiliation(s)
- Andrea Soriano-Redondo
- Helsinki Lab of Interdisciplinary Conservation Science (HELICS), Department of Geosciences and Geography, University of Helsinki, Helsinki, Finland
| | - Ricardo A. Correia
- Helsinki Lab of Interdisciplinary Conservation Science (HELICS), Department of Geosciences and Geography, University of Helsinki, Helsinki, Finland
- Helsinki Institute of Sustainability Science (HELSUS), University of Helsinki, Helsinki, Finland
- Biodiversity Unit, University of Turku, Turku, Finland
| | - Vijay Barve
- Marine Biodiversity Center, Natural History Museum of Los Angeles County, Los Angeles, California, United States of America
| | - Thomas M. Brooks
- International Union for Conservation of Nature (IUCN), Gland, Switzerland
- World Agroforestry Center (ICRAF), University of the Philippines Los Baños, Laguna, Philippines
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Tasmania, Australia
| | - Stuart H. M. Butchart
- BirdLife International, Cambridge, United Kingdom
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
| | - Ivan Jarić
- Université Paris-Saclay, CNRS, AgroParisTech, Ecologie Systématique Evolution–IDEEV, Gif-sur-Yvette, France
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, České Budějovice, Czech Republic
| | - Ritwik Kulkarni
- Helsinki Lab of Interdisciplinary Conservation Science (HELICS), Department of Geosciences and Geography, University of Helsinki, Helsinki, Finland
| | - Richard J. Ladle
- Instituto de Ciências Biológicas e da Saúde, Universidade Federal de Alagoas, Maceió, Brazil
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal
| | - Ana Sofia Vaz
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal
- Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Porto, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairão, Vairão, Portugal
| | - Enrico Di Minin
- Helsinki Lab of Interdisciplinary Conservation Science (HELICS), Department of Geosciences and Geography, University of Helsinki, Helsinki, Finland
- Helsinki Institute of Sustainability Science (HELSUS), University of Helsinki, Helsinki, Finland
- School of Life Sciences, University of KwaZulu-Natal, Durban, South Africa
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2
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Kawahara AY, Storer C, Carvalho APS, Plotkin DM, Condamine FL, Braga MP, Ellis EA, St Laurent RA, Li X, Barve V, Cai L, Earl C, Frandsen PB, Owens HL, Valencia-Montoya WA, Aduse-Poku K, Toussaint EFA, Dexter KM, Doleck T, Markee A, Messcher R, Nguyen YL, Badon JAT, Benítez HA, Braby MF, Buenavente PAC, Chan WP, Collins SC, Rabideau Childers RA, Dankowicz E, Eastwood R, Fric ZF, Gott RJ, Hall JPW, Hallwachs W, Hardy NB, Sipe RLH, Heath A, Hinolan JD, Homziak NT, Hsu YF, Inayoshi Y, Itliong MGA, Janzen DH, Kitching IJ, Kunte K, Lamas G, Landis MJ, Larsen EA, Larsen TB, Leong JV, Lukhtanov V, Maier CA, Martinez JI, Martins DJ, Maruyama K, Maunsell SC, Mega NO, Monastyrskii A, Morais ABB, Müller CJ, Naive MAK, Nielsen G, Padrón PS, Peggie D, Romanowski HP, Sáfián S, Saito M, Schröder S, Shirey V, Soltis D, Soltis P, Sourakov A, Talavera G, Vila R, Vlasanek P, Wang H, Warren AD, Willmott KR, Yago M, Jetz W, Jarzyna MA, Breinholt JW, Espeland M, Ries L, Guralnick RP, Pierce NE, Lohman DJ. A global phylogeny of butterflies reveals their evolutionary history, ancestral hosts and biogeographic origins. Nat Ecol Evol 2023; 7:903-913. [PMID: 37188966 PMCID: PMC10250192 DOI: 10.1038/s41559-023-02041-9] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2022] [Accepted: 03/16/2023] [Indexed: 05/17/2023]
Abstract
Butterflies are a diverse and charismatic insect group that are thought to have evolved with plants and dispersed throughout the world in response to key geological events. However, these hypotheses have not been extensively tested because a comprehensive phylogenetic framework and datasets for butterfly larval hosts and global distributions are lacking. We sequenced 391 genes from nearly 2,300 butterfly species, sampled from 90 countries and 28 specimen collections, to reconstruct a new phylogenomic tree of butterflies representing 92% of all genera. Our phylogeny has strong support for nearly all nodes and demonstrates that at least 36 butterfly tribes require reclassification. Divergence time analyses imply an origin ~100 million years ago for butterflies and indicate that all but one family were present before the K/Pg extinction event. We aggregated larval host datasets and global distribution records and found that butterflies are likely to have first fed on Fabaceae and originated in what is now the Americas. Soon after the Cretaceous Thermal Maximum, butterflies crossed Beringia and diversified in the Palaeotropics. Our results also reveal that most butterfly species are specialists that feed on only one larval host plant family. However, generalist butterflies that consume two or more plant families usually feed on closely related plants.
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Affiliation(s)
- Akito Y Kawahara
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA.
- Entomology and Nematology Department, University of Florida, Gainesville, FL, USA.
- Department of Biology, University of Florida, Gainesville, FL, USA.
| | - Caroline Storer
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Ana Paula S Carvalho
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - David M Plotkin
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Entomology and Nematology Department, University of Florida, Gainesville, FL, USA
| | - Fabien L Condamine
- CNRS, Institut des Sciences de l'Evolution de Montpellier (Université de Montpellier), Montpellier, France
| | - Mariana P Braga
- Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden
- Department of Biology, Washington University in St. Louis, St. Louis, MO, USA
| | - Emily A Ellis
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Ryan A St Laurent
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
| | - Xuankun Li
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Center for Biodiversity Research, Department of Biological Sciences, University of Memphis, Memphis, TN, USA
| | - Vijay Barve
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Liming Cai
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
- Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA, USA
| | - Chandra Earl
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Paul B Frandsen
- Department of Plant and Wildlife Sciences, Brigham Young University, Provo, UT, USA
| | - Hannah L Owens
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Center for Global Mountain Biodiversity, Globe Institute, University of Copenhagen, Copenhagen, Denmark
- Center for Macroecology, Evolution, and Climate, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark
| | - Wendy A Valencia-Montoya
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | - Kwaku Aduse-Poku
- Biology Department, City College of New York, City University of New York, New York, NY, USA
- Department of Life and Earth Sciences, Perimeter College, Georgia State University, Decatur, GA, USA
| | - Emmanuel F A Toussaint
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Department of Entomology, Natural History Museum of Geneva, Geneva, Switzerland
| | - Kelly M Dexter
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Tenzing Doleck
- Biology Department, City College of New York, City University of New York, New York, NY, USA
- PhD Program in Biology, Graduate Center, City University of New York, New York, NY, USA
| | - Amanda Markee
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Rebeccah Messcher
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Y-Lan Nguyen
- Biology Department, City College of New York, City University of New York, New York, NY, USA
| | - Jade Aster T Badon
- Animal Biology Division, Institute of Biological Sciences, University of the Philippines Los Baños, Laguna, Philippines
| | - Hugo A Benítez
- Laboratorio de Ecología y Morfometría Evolutiva, Centro de Investigación de Estudios Avanzados del Maule, Universidad Católica del Maule, Talca, Chile
- Millennium Institute Biodiversity of Antarctic and Subantarctic Ecosystems (BASE), Santiago, Chile
| | - Michael F Braby
- Division of Ecology and Evolution, Research School of Biology, The Australian National University, Acton, Canberra, Australian Capital Territory, Australia
- Australian National Insect Collection, Canberra, Australian Capital Territory, Australia
| | | | - Wei-Ping Chan
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | | | - Richard A Rabideau Childers
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | - Even Dankowicz
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | - Rod Eastwood
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | - Zdenek F Fric
- Biology Centre CAS, České Budějovice, Czech Republic
| | - Riley J Gott
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Entomology and Nematology Department, University of Florida, Gainesville, FL, USA
| | - Jason P W Hall
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
| | - Winnie Hallwachs
- Department of Biology, University of Pennsylvania, Philadelphia, PA, USA
| | - Nate B Hardy
- Department of Entomology and Plant Pathology, Auburn University, Auburn, AL, USA
| | - Rachel L Hawkins Sipe
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | - Alan Heath
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
- Iziko South African Museum, Cape Town, South Africa
| | - Jomar D Hinolan
- Botany and National Herbarium Division, National Museum of the Philippines, Manila, Philippines
| | - Nicholas T Homziak
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Entomology and Nematology Department, University of Florida, Gainesville, FL, USA
| | - Yu-Feng Hsu
- College of Life Science, National Taiwan Normal University, Taipei, Taiwan
| | | | - Micael G A Itliong
- Biology Department, City College of New York, City University of New York, New York, NY, USA
| | - Daniel H Janzen
- Department of Biology, University of Pennsylvania, Philadelphia, PA, USA
| | | | - Krushnamegh Kunte
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru, India
| | - Gerardo Lamas
- Museo de Historia Natural, Universidad Nacional Mayor de San Marcos, Lima, Peru
| | - Michael J Landis
- Department of Biology, Washington University in St. Louis, St. Louis, MO, USA
| | - Elise A Larsen
- Department of Biology, Georgetown University, Washington, DC, USA
| | | | - Jing V Leong
- Biology Department, City College of New York, City University of New York, New York, NY, USA
- Biology Centre CAS, České Budějovice, Czech Republic
- Faculty of Science, Department of Zoology, University of South Bohemia, České Budějovice, Czech Republic
| | - Vladimir Lukhtanov
- Department of Karyosystematics, Zoological Institute of Russian Academy of Sciences, St. Petersburg, Russia
| | - Crystal A Maier
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | - Jose I Martinez
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Entomology and Nematology Department, University of Florida, Gainesville, FL, USA
| | - Dino J Martins
- Turkana Basin Institute, Stony Brook University, Stony Brook, NY, USA
| | | | - Sarah C Maunsell
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | - Nicolás Oliveira Mega
- Departamento de Zoologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
| | - Alexander Monastyrskii
- Vietnam Programme, Fauna & Flora International, Hanoi, Vietnam
- Vietnam National Museum of Nature, Vietnam Academy of Science and Technology, Hanoi, Vietnam
| | - Ana B B Morais
- Centro de Ciências Naturais e Exatas, Pós-Graduação em Biodiversidade Animal, Universidade Federal de Santa Maria, Santa Maria, Brazil
| | | | - Mark Arcebal K Naive
- Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, China
- University of Chinese Academy of Sciences, Beijing, China
- College of Arts and Sciences, Jose Rizal Memorial State University, Tampilisan, Philippines
| | | | - Pablo Sebastián Padrón
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Entomology Laboratory, Museo de Zoología, Universidad del Azuay, Cuenca, Ecuador
| | - Djunijanti Peggie
- Research Center for Biosystematics and Evolution, National Research and Innovation Agency (BRIN), Cibinong-Bogor, Indonesia
| | | | - Szabolcs Sáfián
- Institute of Silviculture and Forest Protection, University of West Hungary, Sopron, Hungary
| | - Motoki Saito
- The Research Institute of Evolutionary Biology (Insect Study Division), Setagaya, Japan
| | | | - Vaughn Shirey
- Department of Biology, Georgetown University, Washington, DC, USA
| | - Doug Soltis
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Pamela Soltis
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Andrei Sourakov
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Gerard Talavera
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
- Institut Botànic de Barcelona (IBB, CSIC-Ajuntament de Barcelona), Barcelona, Spain
| | - Roger Vila
- Institut de Biologia Evolutiva (CSIC-Univ. Pompeu Fabra), Barcelona, Spain
| | - Petr Vlasanek
- T.G. Masaryk Water Research Institute, Prague, Czech Republic
| | - Houshuai Wang
- Department of Entomology, College of Plant Protection, South China Agricultural University, Guangzhou, China
| | - Andrew D Warren
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Keith R Willmott
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Masaya Yago
- The University Museum, The University of Tokyo, Tokyo, Japan
| | - Walter Jetz
- Department of Ecology & Evolutionary Biology, Yale University, New Haven, CT, USA
- Center for Biodiversity and Global Change, Yale University, New Haven, CT, USA
| | - Marta A Jarzyna
- Department of Ecology & Evolutionary Biology, Yale University, New Haven, CT, USA
- Translational Data Analytics Institute, The Ohio State University, Columbus, OH, USA
- Department of Evolution, Ecology and Organismal Biology, The Ohio State University, Columbus, OH, USA
| | - Jesse W Breinholt
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- RAPiD Genomics, Gainesville, FL, USA
| | - Marianne Espeland
- Leibniz Institute for the Analysis of Biodiversity Change, Zoological Research Museum Alexander Koenig, Bonn, Germany
| | - Leslie Ries
- Department of Biology, Georgetown University, Washington, DC, USA
| | - Robert P Guralnick
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Naomi E Pierce
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA.
| | - David J Lohman
- Biology Department, City College of New York, City University of New York, New York, NY, USA.
- PhD Program in Biology, Graduate Center, City University of New York, New York, NY, USA.
- Entomology Section, National Museum of Natural History, Manila, Philippines.
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Shirey V, Larsen E, Doherty A, Kim CA, Al-Sulaiman FT, Hinolan JD, Itliong MGA, Naive MAK, Ku M, Belitz M, Jeschke G, Barve V, Lamas G, Kawahara AY, Guralnick R, Pierce NE, Lohman DJ, Ries L. LepTraits 1.0 A globally comprehensive dataset of butterfly traits. Sci Data 2022; 9:382. [PMID: 35794183 PMCID: PMC9259668 DOI: 10.1038/s41597-022-01473-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Accepted: 06/13/2022] [Indexed: 12/04/2022] Open
Abstract
Here, we present the largest, global dataset of Lepidopteran traits, focusing initially on butterflies (ca. 12,500 species records). These traits are derived from field guides, taxonomic treatments, and other literature resources. We present traits on wing size, phenology,voltinism, diapause/overwintering stage, hostplant associations, and habitat affinities (canopy, edge, moisture, and disturbance). This dataset will facilitate comparative research on butterfly ecology and evolution and our goal is to inspire future research collaboration and the continued development of this dataset. Measurement(s) | Wingspan • Habitat Affinity • oviposition • voltinism • phenology • hostplant association | Technology Type(s) | natural language processing | Sample Characteristic - Organism | Lepidoptera | Sample Characteristic - Location | Global |
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4
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Marsh CJ, Sica YV, Burgin CJ, Dorman WA, Anderson RC, del Toro Mijares I, Vigneron JG, Barve V, Dombrowik VL, Duong M, Guralnick R, Hart JA, Maypole JK, McCall K, Ranipeta A, Schuerkmann A, Torselli MA, Lacher T, Mittermeier RA, Rylands AB, Sechrest W, Wilson DE, Abba AM, Aguirre LF, Arroyo‐Cabrales J, Astúa D, Baker AM, Braulik G, Braun JK, Brito J, Busher PE, Burneo SF, Camacho MA, Cavallini P, de Almeida Chiquito E, Cook JA, Cserkész T, Csorba G, Cuéllar Soto E, da Cunha Tavares V, Davenport TRB, Deméré T, Denys C, Dickman CR, Eldridge MDB, Fernandez‐Duque E, Francis CM, Frankham G, Franklin WL, Freitas T, Friend JA, Gadsby EL, Garbino GST, Gaubert P, Giannini N, Giarla T, Gilchrist JS, Gongora J, Goodman SM, Gursky‐Doyen S, Hackländer K, Hafner MS, Hawkins M, Helgen KM, Heritage S, Hinckley A, Hintsche S, Holden M, Holekamp KE, Honeycutt RL, Huffman BA, Humle T, Hutterer R, Ibáñez Ulargui C, Jackson SM, Janecka J, Janecka M, Jenkins P, Juškaitis R, Juste J, Kays R, Kilpatrick CW, Kingston T, Koprowski JL, Kryštufek B, Lavery T, Lee TE, Leite YLR, Novaes RLM, Lim BK, Lissovsky A, López‐Antoñanzas R, López‐Baucells A, MacLeod CD, Maisels FG, Mares MA, Marsh H, Mattioli S, Meijaard E, Monadjem A, Morton FB, Musser G, Nadler T, Norris RW, Ojeda A, Ordóñez‐Garza N, Pardiñas UFJ, Patterson BD, Pavan A, Pennay M, Pereira C, Prado J, Queiroz HL, Richardson M, Riley EP, Rossiter SJ, Rubenstein DI, Ruelas D, Salazar‐Bravo J, Schai‐Braun S, Schank CJ, Schwitzer C, Sheeran LK, Shekelle M, Shenbrot G, Soisook P, Solari S, Southgate R, Superina M, Taber AB, Talebi M, Taylor P, Vu Dinh T, Ting N, Tirira DG, Tsang S, Turvey ST, Valdez R, Van Cakenberghe V, Veron G, Wallis J, Wells R, Whittaker D, Williamson EA, Wittemyer G, Woinarski J, Zinner D, Upham NS, Jetz W. Expert range maps of global mammal distributions harmonised to three taxonomic authorities. J Biogeogr 2022; 49:979-992. [PMID: 35506011 PMCID: PMC9060555 DOI: 10.1111/jbi.14330] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Revised: 01/05/2022] [Accepted: 01/13/2022] [Indexed: 06/01/2023]
Abstract
AIM Comprehensive, global information on species' occurrences is an essential biodiversity variable and central to a range of applications in ecology, evolution, biogeography and conservation. Expert range maps often represent a species' only available distributional information and play an increasing role in conservation assessments and macroecology. We provide global range maps for the native ranges of all extant mammal species harmonised to the taxonomy of the Mammal Diversity Database (MDD) mobilised from two sources, the Handbook of the Mammals of the World (HMW) and the Illustrated Checklist of the Mammals of the World (CMW). LOCATION Global. TAXON All extant mammal species. METHODS Range maps were digitally interpreted, georeferenced, error-checked and subsequently taxonomically aligned between the HMW (6253 species), the CMW (6431 species) and the MDD taxonomies (6362 species). RESULTS Range maps can be evaluated and visualised in an online map browser at Map of Life (mol.org) and accessed for individual or batch download for non-commercial use. MAIN CONCLUSION Expert maps of species' global distributions are limited in their spatial detail and temporal specificity, but form a useful basis for broad-scale characterizations and model-based integration with other data. We provide georeferenced range maps for the native ranges of all extant mammal species as shapefiles, with species-level metadata and source information packaged together in geodatabase format. Across the three taxonomic sources our maps entail, there are 1784 taxonomic name differences compared to the maps currently available on the IUCN Red List website. The expert maps provided here are harmonised to the MDD taxonomic authority and linked to a community of online tools that will enable transparent future updates and version control.
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Affiliation(s)
- Charles J. Marsh
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Yanina V. Sica
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Connor J. Burgin
- Department of BiologyUniversity of New MexicoAlbuquerqueNew MexicoUSA
| | - Wendy A. Dorman
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Robert C. Anderson
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Isabel del Toro Mijares
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Jessica G. Vigneron
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Vijay Barve
- Florida Museum of Natural HistoryUniversity of FloridaGainesvilleFloridaUSA
| | - Victoria L. Dombrowik
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Michelle Duong
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Robert Guralnick
- Florida Museum of Natural HistoryUniversity of FloridaGainesvilleFloridaUSA
| | - Julie A. Hart
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
- New York Natural Heritage ProgramState University of New York College of Environmental Science and ForestryAlbanyNew YorkUSA
| | - J. Krish Maypole
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Kira McCall
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Ajay Ranipeta
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Anna Schuerkmann
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Michael A. Torselli
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Thomas Lacher
- Department of Ecology and Conservation BiologyTexas A&M UniversityCollege StationTexasUSA
- Re:wildAustinTexasUSA
| | | | | | | | - Don E. Wilson
- National Museum of Natural HistorySmithsonian InstitutionWashingtonDistrict of ColumbiaUSA
| | - Agustín M. Abba
- Centro de Estudios Parasitológicos y de Vectores (CEPAVE‐UNLP‐CONICET)La Plata, Buenos AiresArgentina
| | - Luis F. Aguirre
- Centro de Biodiversidad y GenéticaUniversidad Mayor de San SimónCochabambaBolivia
| | | | - Diego Astúa
- Departamento de ZoologiaUniversidade Federal de PernambucoRecifePernambucoBrazil
| | - Andrew M. Baker
- School of Biology and Environmental Science, Faculty of ScienceQueensland University of TechnologyBrisbaneQueenslandAustralia
- Biodiversity and Geosciences ProgramQueensland MuseumBrisbaneQueenslandAustralia
| | - Gill Braulik
- School of BiologyUniversity of St. AndrewsSt. Andrews, FifeUK
| | | | - Jorge Brito
- Instituto Nacional de Biodiversidad (INABIO)QuitoEcuador
| | - Peter E. Busher
- College of General StudiesBoston UniversityBostonMassachusettsUSA
| | - Santiago F. Burneo
- Sección Mastozoología, Museo de Zoología, Facultad de Ciencias Exactas y NaturalesPontificia Universidad Católica del EcuadorQuitoEcuador
| | - M. Alejandra Camacho
- Sección Mastozoología, Museo de Zoología, Facultad de Ciencias Exactas y NaturalesPontificia Universidad Católica del EcuadorQuitoEcuador
| | | | | | - Joseph A. Cook
- Museum of Southwestern Biology and Department of BiologyUniversity of New MexicoAlbuquerqueNew MexicoUSA
| | - Tamás Cserkész
- Department of ZoologyHungarian Natural History MuseumBudapestHungary
| | - Gábor Csorba
- Department of ZoologyHungarian Natural History MuseumBudapestHungary
| | | | - Valeria da Cunha Tavares
- Vale Technological InstituteBelémParáBrazil
- Laboratório de Mamíferos, Departamento de Sistemática e Ecologia, CCEN/DSEUniversidade Federal da ParaíbaJoão PessoaPBBrazil
| | - Tim R. B. Davenport
- Species Conservation & Science (Africa)Wildlife Conservation Society (WCS)ArushaTanzania
| | | | - Christiane Denys
- Institut de Systématique, Evolution, Biodiversité (ISYEB)Muséum national d'Histoire naturelle (CNRS)ParisFrance
| | - Christopher R. Dickman
- Desert Ecology Research Group, School of Life and Environmental SciencesThe University of SydneySydneyNew South WalesAustralia
| | - Mark D. B. Eldridge
- Australian Museum Research InstituteAustralian MuseumSydneyNew South WalesAustralia
| | - Eduardo Fernandez‐Duque
- Department of Anthropology and School of the EnvironmentYale UniversityNew HavenConnecticutUSA
| | - Charles M. Francis
- Canadian Wildlife ServiceEnvironment and Climate Change CanadaOttawaOntarioCanada
| | - Greta Frankham
- Australian Museum Research InstituteAustralian MuseumSydneyNew South WalesAustralia
| | - William L. Franklin
- Deparment of Natural Resource Ecology and EnvironmentIowa State UniversityAmesIowaUSA
| | - Thales Freitas
- Departamento de GenéticaUniversidade Federal do Rio Grande do SulPorto AlegreRio Grande do SulBrazil
| | - J. Anthony Friend
- Department of BiodiversityConservation and AttractionsAlbanyWestern AustraliaAustralia
| | | | | | - Philippe Gaubert
- Laboratoire Évolution & Diversité BiologiqueUniversité Toulouse III Paul SabatierToulouseFrance
| | - Norberto Giannini
- Unidad Ejecutora LilloCONICET ‐ Fundación Miguel LilloSan Miguel de Tucumán, TucumánArgentina
| | - Thomas Giarla
- Department of BiologySiena CollegeLoudonvilleNew YorkUSA
| | | | - Jaime Gongora
- Sydney School of Veterinary Science, Faculty of ScienceThe University of SydneySydneyNew South WalesAustralia
| | - Steven M. Goodman
- Negaunee Integrative Research Center, Field Museum of Natural HistoryChicagoIllinoisUSA
| | | | - Klaus Hackländer
- Institute of Wildlife Biology and Game ManagementUniversity of Natural Resources and Life SciencesWienAustria
| | - Mark S. Hafner
- Museum of Natural ScienceLouisiana State UniversityBaton RougeLouisianaUSA
| | - Melissa Hawkins
- National Museum of Natural HistorySmithsonian InstitutionWashingtonDistrict of ColumbiaUSA
| | - Kristofer M. Helgen
- Australian Museum Research InstituteAustralian MuseumSydneyNew South WalesAustralia
| | - Steven Heritage
- Duke Lemur Center, Museum of Natural HistoryDuke UniversityDurhamNorth CarolinaUSA
| | | | | | - Mary Holden
- Department of MammalogyAmerican Museum of Natural HistoryNew YorkNew YorkUSA
| | - Kay E. Holekamp
- Department of Integrative BiologyMichigan State UniversityEast LansingMichiganUSA
| | | | | | - Tatyana Humle
- Durrell Institute of Conservation and EcologySchool of Anthropology and Conservation, University of KentCanterburyUK
| | | | | | | | - Jan Janecka
- Department of Biological SciencesDuquesne UniversityPittsburghPennsylvaniaUSA
| | - Mary Janecka
- Department of Biological SciencesUniversity of PittsburghPittsburghPennsylvaniaUSA
| | - Paula Jenkins
- Mammal Group, Vertebrates DivisionDepartment of Life Sciences, The Natural History MuseumLondonUK
| | | | | | - Roland Kays
- North Carolina Museum of Natural SciencesRaleighNorth CarolinaUSA
| | | | - Tigga Kingston
- Department of Biological SciencesTexas Tech UniversityLubbockTexasUSA
| | | | | | - Tyrone Lavery
- Fenner School of Environment and SocietyThe Australian National UniversityActonAustralian Capital TerritoryAustralia
| | - Thomas E. Lee
- Department of BiologyAbilene Christian UniversityAbileneTexasUSA
| | - Yuri L. R. Leite
- Departamento de Ciências BiológicasUniversidade Federal do Espírito SantoVitóriaEspiríto SantoBrazil
| | | | - Burton K. Lim
- Department of Natural HistoryRoyal Ontario MuseumTorontoOntarioCanada
| | | | - Raquel López‐Antoñanzas
- Institut des Sciences de l'Évolution de Montpellier (ISE‐M, UMR 5554, UM/CNRS/IRD/EPHE)MontpellierFrance
| | | | | | - Fiona G. Maisels
- Wildlife Conservation SocietyGlobal Conservation ProgramNew YorkNew YorkUSA
- Faculty of Natural SciencesUniversity of StirlingStirlingUK
| | | | - Helene Marsh
- Division of Tropical Environments and SocietiesCentre for Tropical Water and Aquatic Ecosystem Research, James Cook UniversityTownsvilleQueenslandAustralia
| | - Stefano Mattioli
- Research Unit of Behavioural Ecology, Ethology and Wildlife Management, Department of Life SciencesUniversity of SienaSienaItaly
| | - Erik Meijaard
- Borneo FuturesBandar Seri BegawanBABrunei Darussalam
| | - Ara Monadjem
- Department of Biological SciencesUniversity of EswatiniKwaluseniEswatini
- Department of Zoology & Entomology, Mammal Research InstituteUniversity of PretoriaPretoriaSouth Africa
| | | | - Grace Musser
- Jackson School of GeosciencesUniversity of Texas at AustinAustinTexasUSA
| | - Tilo Nadler
- Cuc Phuong CommuneNho Quan DistrictNinh BInh, ProvinceVietnam
| | - Ryan W. Norris
- Evolution, Ecology and Organismal BiologyThe Ohio State UniversityLimaOhioUSA
| | - Agustina Ojeda
- Instituto Argentino de Zonas Áridas (IADIZA)‐CCT Mendoza‐CONICETMendozaArgentina
| | | | | | - Bruce D. Patterson
- Negaunee Integrative Research Center, Field Museum of Natural HistoryChicagoIllinoisUSA
| | - Ana Pavan
- Universidade de São PauloSão PauloBrazil
| | - Michael Pennay
- NSW National Parks and Wildlife ServiceQueanbeyanNew South WalesAustralia
| | | | | | - Helder L. Queiroz
- Instituto de Desenvolvimento Sustentável Mamirauá – IDSMTeféAmazonasBrazil
| | | | - Erin P. Riley
- Department of AnthropologySan Diego State UniversitySan DiegoCaliforniaUSA
| | - Stephen J. Rossiter
- School of Biological and Chemical SciencesQueen Mary University of LondonLondonUK
| | - Daniel I. Rubenstein
- Department of Ecology and Evolutionary BiologyPrinceton UniversityPrincetonNew JerseyUSA
| | - Dennisse Ruelas
- Museo de Historia NaturalUniversidad Nacional Mayor de San Marcos, LimaLimaPeru
- Institut des Sciences de l'Evolution (ISEM, UMR 5554 CNRS‐IRD‐UM)Université de MontpellierMontpellier Cedex 5France
| | | | - Stéphanie Schai‐Braun
- Institute of Wildlife Biology and Game ManagementUniversity of Natural Resources and Life SciencesViennaAustria
| | - Cody J. Schank
- Re:wildAustinTexasUSA
- Department of Geography and the EnvironmentThe University of Texas at AustinAustinTexasUSA
| | | | - Lori K. Sheeran
- Department of Anthropology and Museum StudiesCentral Washington UniversityEllensburgWAUSA
| | - Myron Shekelle
- Department of AnthropologyWestern Washington UniversityBellinghamWAUSA
| | - Georgy Shenbrot
- Mitrani Department of Desert EcologyJacob Blaustein Institutes for Desert ResearchBen‐Gurion University of the NegevMidreshet Ben‐GurionIsrael
| | - Pipat Soisook
- Princess Maha Chakri Sirindhorn Natural History MuseumPrince of Songkhla UniversityHatyai, SongkhlaThailand
| | - Sergio Solari
- Instituto de BiologíaUniversidad de AntioquiaMedellínColombia
| | | | - Mariella Superina
- IMBECU, CCT CONICET Mendoza – UNCuyoParque Gral. San MartínMendozaArgentina
| | - Andrew B. Taber
- Forestry DivisionFood and Agriculture Organization of the United NationsRomeItaly
| | - Maurício Talebi
- Laboratório de Ecologia e Conservação da NaturezaDeptartamento de Ciências AmbientaisUniversidade Federal de São Paulo (UNIFESP) ‐ Campus Diadema, DiademaSão PauloBrazil
| | | | - Thong Vu Dinh
- Institute of Ecology and Biological ResourcesVietnam Academy of Science and TechnologyHanoiVietnam
| | - Nelson Ting
- Department of AnthropologyUniversity of OregonEugeneOregonUSA
| | | | - Susan Tsang
- Department of MammalogyAmerican Museum of Natural HistoryNew YorkNew YorkUSA
| | | | - Raul Valdez
- Department of Fish, Wildlife, and Conservation EcologyNew Mexico State UniversityLas CrucesNew MexicoUSA
| | - Victor Van Cakenberghe
- Laboratory for Functional Morphology, Biology DepartmentUniversity of Antwerp, Campus Drie EikenAntwerpen (Wilrijk)Belgium
| | - Geraldine Veron
- Institut de Systématique, Evolution, Biodiversité (ISYEB), Muséum national d'Histoire naturelle, CNRSSorbonne Université, EPHE, Université des AntillesParisFrance
| | | | - Rod Wells
- Biological Sciences, College of Science and EngineeringFlinders UniversityAdelaideSouth AustraliaAustralia
| | - Danielle Whittaker
- BEACON Center for the Study of Evolution in ActionMichigan State UniversityEast LansingMichiganUSA
| | | | - George Wittemyer
- Department of Fish, Wildlife and Conservation BiologyColorado State UniversityFort CollinsColoradoUSA
| | - John Woinarski
- Research Institute for the Environment and LivelihoodsCharles Darwin UniversityCasuarinaNorthern TerritoryAustralia
| | - Dietmar Zinner
- German Primate Center (DPZ)Leibniz Institute for Primate ResearchGöttingenGermany
| | - Nathan S. Upham
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
- School of Life SciencesArizona State UniversityTempeArizonaUSA
| | - Walter Jetz
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
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5
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Nuñez‐Penichet C, Cobos ME, Soberón J, Gueta T, Barve N, Barve V, Navarro‐Sigüenza AG, Peterson AT. Selection of sampling sites for biodiversity inventory: effects of environmental and geographic considerations. Methods Ecol Evol 2022. [DOI: 10.1111/2041-210x.13869] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- Claudia Nuñez‐Penichet
- Biodiversity Institute and Department of Ecology & Evolutionary Biology University of Kansas KS USA
| | - Marlon E. Cobos
- Biodiversity Institute and Department of Ecology & Evolutionary Biology University of Kansas KS USA
| | - Jorge Soberón
- Biodiversity Institute and Department of Ecology & Evolutionary Biology University of Kansas KS USA
| | - Tomer Gueta
- Faculty of Civil and Environmental Engineering Technion Israel Institute of Technology Haifa
| | - Narayani Barve
- Florida Museum of Natural History University of Florida Gainesville FL USA
| | - Vijay Barve
- Florida Museum of Natural History University of Florida Gainesville FL USA
- Department of Entomology Purdue University West Lafayette IN USA
| | | | - A. Townsend Peterson
- Biodiversity Institute and Department of Ecology & Evolutionary Biology University of Kansas KS USA
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6
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Vattakaven T, Barve V, Ramaswami G, Singh P, Jagannathan S, Dhandapani B. Best Practices for Data Management in Citizen Science - An Indian Outlook. Biodiv Inf 2022. [DOI: 10.17161/bi.v17i.16441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Citizen science has been in practice since the 1800s and is an important source of data for scientists and other applied users. It plays a vital role in democratizing science, providing equitable access to scientific participation and data, helps build the capacity of its participants, inculcates the spirit of scientific endeavor and discovery and sensitizes participants towards species and habitat conservation, creating a sense of stewardship towards nature. In recent years, citizen science, especially in biodiversity, has rapidly developed with the rising popularity of smartphones, and widespread access to the internet, leading to wider adoption globally. India has also witnessed a surge in the number of new citizen science projects being initiated and increased participation in these projects. With more proponents looking at initiating such projects, there is little documentation from an Indian perspective on setting up, collecting, managing, and maintaining biodiversity-focused citizen science projects, especially in a data-management context. We have attempted to fill this void by examining the best practices across the data life cycle of citizen science projects while keeping in mind sensitivities and scenarios in India. We hope this will prove to be an important reference for citizen science practitioners looking to better manage their data in their projects.
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7
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Belitz MW, Barve V, Doby JR, Hantak MM, Larsen EA, Li D, Oswald JA, Sewnath N, Walters M, Barve N, Earl K, Gardner N, Guralnick RP, Stucky BJ. Climate drivers of adult insect activity are conditioned by life history traits. Ecol Lett 2021; 24:2687-2699. [PMID: 34636143 DOI: 10.1111/ele.13889] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2021] [Revised: 08/27/2021] [Accepted: 08/27/2021] [Indexed: 02/04/2023]
Abstract
Insect phenological lability is key for determining which species will adapt under environmental change. However, little is known about when adult insect activity terminates and overall activity duration. We used community-science and museum specimen data to investigate the effects of climate and urbanisation on timing of adult insect activity for 101 species varying in life history traits. We found detritivores and species with aquatic larval stages extend activity periods most rapidly in response to increasing regional temperature. Conversely, species with subterranean larval stages have relatively constant durations regardless of regional temperature. Species extended their period of adult activity similarly in warmer conditions regardless of voltinism classification. Longer adult durations may represent a general response to warming, but voltinism data in subtropical environments are likely underreported. This effort provides a framework to address the drivers of adult insect phenology at continental scales and a basis for predicting species response to environmental change.
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Affiliation(s)
- Michael W Belitz
- Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA
| | - Vijay Barve
- Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA.,Department of Entomology, Purdue University, West Lafayette, Indiana, USA
| | - Joshua R Doby
- Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA
| | - Maggie M Hantak
- Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA
| | - Elise A Larsen
- Department of Biology, Georgetown University, Washington, District of Columbia, USA
| | - Daijiang Li
- Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA.,Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisina, USA.,Center for Computation & Technology, Louisiana State University, Baton Rouge, Louisina, USA
| | - Jessica A Oswald
- Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA.,Biology Department, University of Nevada Reno, Reno, Nevada, USA
| | - Neeka Sewnath
- Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA
| | - Mitchell Walters
- Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA
| | - Narayani Barve
- Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA
| | - Kamala Earl
- Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA
| | - Nicholas Gardner
- Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA
| | - Robert P Guralnick
- Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA
| | - Brian J Stucky
- Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA
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8
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Di Cecco GJ, Barve V, Belitz MW, Stucky BJ, Guralnick RP, Hurlbert AH. Observing the Observers: How Participants Contribute Data to iNaturalist and Implications for Biodiversity Science. Bioscience 2021. [DOI: 10.1093/biosci/biab093] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
The availability of citizen science data has resulted in growing applications in biodiversity science. One widely used platform, iNaturalist, provides millions of digitally vouchered observations submitted by a global user base. These observation records include a date and a location but otherwise do not contain any information about the sampling process. As a result, sampling biases must be inferred from the data themselves. In the present article, we examine spatial and temporal biases in iNaturalist observations from the platform's launch in 2008 through the end of 2019. We also characterize user behavior on the platform in terms of individual activity level and taxonomic specialization. We found that, at the level of taxonomic class, the users typically specialized on a particular group, especially plants or insects, and rarely made observations of the same species twice. Biodiversity scientists should consider whether user behavior results in systematic biases in their analyses before using iNaturalist data.
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Affiliation(s)
- Grace J Di Cecco
- Department of Biology, University of North Carolina, Chapel Hill, North Carolina, United States
| | - Vijay Barve
- biodiversity informatics, Florida Museum of Natural History, Gainesville, Florida, United States
| | - Michael W Belitz
- biodiversity informatics, Florida Museum of Natural History, Gainesville, Florida, United States
| | - Brian J Stucky
- biodiversity informatics, Florida Museum of Natural History, Gainesville, Florida, United States
| | - Robert P Guralnick
- biodiversity informatics, Florida Museum of Natural History, Gainesville, Florida, United States
| | - Allen H Hurlbert
- Department of Biology, University of North Carolina, Chapel Hill, North Carolina, United States
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9
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Earl C, Belitz MW, Laffan SW, Barve V, Barve N, Soltis DE, Allen JM, Soltis PS, Mishler BD, Kawahara AY, Guralnick R. Spatial phylogenetics of butterflies in relation to environmental drivers and angiosperm diversity across North America. iScience 2021; 24:102239. [PMID: 33997666 PMCID: PMC8101049 DOI: 10.1016/j.isci.2021.102239] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Revised: 11/13/2020] [Accepted: 02/23/2021] [Indexed: 11/25/2022] Open
Abstract
Broad-scale, quantitative assessments of insect biodiversity and the factors shaping it remain particularly poorly explored. Here we undertook a spatial phylogenetic analysis of North American butterflies to test whether climate stability and temperature gradients have shaped their diversity and endemism. We also performed the first quantitative comparisons of spatial phylogenetic patterns between butterflies and flowering plants. We expected concordance between the two groups based on shared historical environmental drivers and presumed strong butterfly-host plant specializations. We instead found that biodiversity patterns in butterflies are strikingly different from flowering plants, especially warm deserts. In particular, butterflies show different patterns of phylogenetic clustering compared with flowering plants, suggesting differences in habitat conservation between the two groups. These results suggest that shared biogeographic histories and trophic associations do not necessarily assure similar diversity outcomes. The work has applied value in conservation planning, documenting warm deserts as a North American butterfly biodiversity hotspot.
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Affiliation(s)
- Chandra Earl
- Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA
- Genetics Institute, University of Florida, Gainesville, FL 32611, USA
| | - Michael W. Belitz
- Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA
- Department of Biology, University of Florida, Gainesville, FL 32611, USA
- Biodiversity Institute, University of Florida, Gainesville, FL 32611, USA
| | - Shawn W. Laffan
- School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, NSW, Australia
| | - Vijay Barve
- Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA
| | - Narayani Barve
- Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA
| | - Douglas E. Soltis
- Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA
- Genetics Institute, University of Florida, Gainesville, FL 32611, USA
- Department of Biology, University of Florida, Gainesville, FL 32611, USA
- Biodiversity Institute, University of Florida, Gainesville, FL 32611, USA
| | - Julie M. Allen
- Department of Biology, University of Nevada, Reno, Reno, NV 89557, USA
| | - Pamela S. Soltis
- Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA
- Genetics Institute, University of Florida, Gainesville, FL 32611, USA
- Biodiversity Institute, University of Florida, Gainesville, FL 32611, USA
| | - Brent D. Mishler
- University of Jepson Herbaria, University of California, Berkeley, CA 94720, USA
- Department of Integrative Biology, University of California, Berkeley, CA 94720, USA
| | - Akito Y. Kawahara
- Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA
- Genetics Institute, University of Florida, Gainesville, FL 32611, USA
- Department of Biology, University of Florida, Gainesville, FL 32611, USA
| | - Robert Guralnick
- Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA
- Genetics Institute, University of Florida, Gainesville, FL 32611, USA
- Department of Biology, University of Florida, Gainesville, FL 32611, USA
- Biodiversity Institute, University of Florida, Gainesville, FL 32611, USA
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10
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Li D, Barve N, Brenskelle L, Earl K, Barve V, Belitz MW, Doby J, Hantak MM, Oswald JA, Stucky BJ, Walters M, Guralnick RP. Climate, urbanization, and species traits interactively drive flowering duration. Glob Chang Biol 2021; 27:892-903. [PMID: 33249694 DOI: 10.1111/gcb.15461] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2020] [Accepted: 11/04/2020] [Indexed: 05/23/2023]
Abstract
A wave of green leaves and multi-colored flowers advances from low to high latitudes each spring. However, little is known about how flowering offset (i.e., ending of flowering) and duration of populations of the same species vary along environmental gradients. Understanding these patterns is critical for predicting the effects of future climate and land-use change on plants, pollinators, and herbivores. Here, we investigated potential climatic and landscape drivers of flowering onset, offset, and duration of 52 plant species with varying key traits. We generated phenology estimates using >270,000 community-science photographs and a novel presence-only phenometric estimation method. We found longer flowering durations in warmer areas, which is more obvious for summer-blooming species compared to spring-bloomers driven by their strongly differing offset dynamics. We also found that higher human population density and higher annual precipitation are associated with delayed flowering offset and extended flowering duration. Finally, offset of woody perennials was more sensitive than herbaceous species to both climate and urbanization drivers. Empirical forecast models suggested that flowering durations will be longer in 2030 and 2050 under representative concentration pathway (RCP) 8.5, especially for summer-blooming species. Our study provides critical insight into drivers of key flowering phenophases and confirms that Hopkins' Bioclimatic Law also applies to flowering durations for summer-blooming species and herbaceous spring-blooming species.
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Affiliation(s)
- Daijiang Li
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA
- Center for Computation & Technology, Louisiana State University, Baton Rouge, LA, USA
| | - Narayani Barve
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Laura Brenskelle
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Kamala Earl
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Vijay Barve
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Michael W Belitz
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Joshua Doby
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Maggie M Hantak
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Jessica A Oswald
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Biology Department, University of Nevada Reno, Reno, NV, USA
| | - Brian J Stucky
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Mitch Walters
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Robert P Guralnick
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
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11
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Osorio‐Olvera L, Lira‐Noriega A, Soberón J, Peterson AT, Falconi M, Contreras‐Díaz RG, Martínez‐Meyer E, Barve V, Barve N. ntbox
: An
r
package with graphical user interface for modelling and evaluating multidimensional ecological niches. Methods Ecol Evol 2020. [DOI: 10.1111/2041-210x.13452] [Citation(s) in RCA: 94] [Impact Index Per Article: 23.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Luis Osorio‐Olvera
- Departamento de Matemáticas Facultad de Ciencias Universidad Nacional Autónoma de México Ciudad de México México
- Biodiversity Institute University of Kansas Lawrence KS USA
| | - Andrés Lira‐Noriega
- CONACyT Research Fellow, Red de Estudios Moleculares Avanzados‐Instituto de Ecología Veracruz México
| | - Jorge Soberón
- Biodiversity Institute University of Kansas Lawrence KS USA
| | | | - Manuel Falconi
- Departamento de Matemáticas Facultad de Ciencias Universidad Nacional Autónoma de México Ciudad de México México
| | - Rusby G. Contreras‐Díaz
- Departamento de Matemáticas Facultad de Ciencias Universidad Nacional Autónoma de México Ciudad de México México
- Posgrado en Ciencias Biológicas, Unidad de Posgrado, Edificio A, Circuito de Posgrados Ciudad Universitaria Ciudad de México México
| | - Enrique Martínez‐Meyer
- Instituto de Biología Universidad Nacional Autónoma de México México City México
- Centro del Cambio Global y la Sustentabilidad en el Sureste A.C. Villahermosa Mexico
| | - Vijay Barve
- Florida Museum of Natural History University of Florida Gainesville FL USA
| | - Narayani Barve
- Florida Museum of Natural History University of Florida Gainesville FL USA
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12
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Owens HL, Ribeiro V, Saupe EE, Cobos ME, Hosner PA, Cooper JC, Samy AM, Barve V, Barve N, Muñoz‐R. CJ, Peterson AT. Acknowledging uncertainty in evolutionary reconstructions of ecological niches. Ecol Evol 2020; 10:6967-6977. [PMID: 32760505 PMCID: PMC7391559 DOI: 10.1002/ece3.6359] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Revised: 04/07/2020] [Accepted: 04/22/2020] [Indexed: 01/05/2023] Open
Abstract
Reconstructing ecological niche evolution can provide insight into the biogeography and diversification of evolving lineages. However, comparative phylogenetic methods may infer the history of ecological niche evolution inaccurately because (a) species' niches are often poorly characterized; and (b) phylogenetic comparative methods rely on niche summary statistics rather than full estimates of species' environmental tolerances. Here, we propose a new framework for coding ecological niches and reconstructing their evolution that explicitly acknowledges and incorporates the uncertainty introduced by incomplete niche characterization. Then, we modify existing ancestral state inference methods to leverage full estimates of environmental tolerances. We provide a worked empirical example of our method, investigating ecological niche evolution in the New World orioles (Aves: Passeriformes: Icterus spp.). Temperature and precipitation tolerances were generally broad and conserved among orioles, with niche reduction and specialization limited to a few terminal branches. Tools for performing these reconstructions are available in a new R package called nichevol.
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Affiliation(s)
- Hannah L. Owens
- Center for Macroecology, Evolution, and ClimateGLOBE InstituteUniversity of CopenhagenCopenhagenDenmark
- Florida Museum of Natural HistoryUniversity of FloridaGainesvilleFLUSA
| | | | - Erin E. Saupe
- Department of Earth SciencesUniversity of OxfordOxfordUK
| | | | - Peter A. Hosner
- Center for Macroecology, Evolution, and ClimateGLOBE InstituteUniversity of CopenhagenCopenhagenDenmark
| | - Jacob C. Cooper
- Committee on Evolutionary BiologyThe University of ChicagoChicagoILUSA
| | - Abdallah M. Samy
- Entomology DepartmentFaculty of ScienceAin Shams UniversityCairoEgypt
| | - Vijay Barve
- Florida Museum of Natural HistoryUniversity of FloridaGainesvilleFLUSA
| | - Narayani Barve
- Florida Museum of Natural HistoryUniversity of FloridaGainesvilleFLUSA
| | - Carlos J. Muñoz‐R.
- Laboratorio de Análisis EspacialesInstituto de BiologíaUniversidad Nacional Autónoma de MéxicoCiudad de MéxicoMexico
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Stucky BJ, Balhoff JP, Barve N, Barve V, Brenskelle L, Brush MH, Dahlem GA, Gilbert JDJ, Kawahara AY, Keller O, Lucky A, Mayhew PJ, Plotkin D, Seltmann KC, Talamas E, Vaidya G, Walls R, Yoder M, Zhang G, Guralnick R. Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions. Biodivers Data J 2019; 7:e33303. [PMID: 30918448 PMCID: PMC6426826 DOI: 10.3897/bdj.7.e33303] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2019] [Accepted: 02/28/2019] [Indexed: 11/12/2022] Open
Abstract
Insects are possibly the most taxonomically and ecologically diverse class of multicellular organisms on Earth. Consequently, they provide nearly unlimited opportunities to develop and test ecological and evolutionary hypotheses. Currently, however, large-scale studies of insect ecology, behavior, and trait evolution are impeded by the difficulty in obtaining and analyzing data derived from natural history observations of insects. These data are typically highly heterogeneous and widely scattered among many sources, which makes developing robust information systems to aggregate and disseminate them a significant challenge. As a step towards this goal, we report initial results of a new effort to develop a standardized vocabulary and ontology for insect natural history data. In particular, we describe a new database of representative insect natural history data derived from multiple sources (but focused on data from specimens in biological collections), an analysis of the abstract conceptual areas required for a comprehensive ontology of insect natural history data, and a database of use cases and competency questions to guide the development of data systems for insect natural history data. We also discuss data modeling and technology-related challenges that must be overcome to implement robust integration of insect natural history data.
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Affiliation(s)
- Brian J. Stucky
- Florida Museum of Natural History, University of Florida, Gainesville, FL, United States of AmericaFlorida Museum of Natural History, University of FloridaGainesville, FLUnited States of America
| | - James P. Balhoff
- Renaissance Computing Institute, University of North Carolina, Chapel Hill, NC, United States of AmericaRenaissance Computing Institute, University of North CarolinaChapel Hill, NCUnited States of America
| | - Narayani Barve
- Florida Museum of Natural History, University of Florida, Gainesville, FL, United States of AmericaFlorida Museum of Natural History, University of FloridaGainesville, FLUnited States of America
| | - Vijay Barve
- Florida Museum of Natural History, University of Florida, Gainesville, FL, United States of AmericaFlorida Museum of Natural History, University of FloridaGainesville, FLUnited States of America
| | - Laura Brenskelle
- Florida Museum of Natural History, University of Florida, Gainesville, FL, United States of AmericaFlorida Museum of Natural History, University of FloridaGainesville, FLUnited States of America
| | - Matthew H. Brush
- Oregon Health and Science University, Portland, OR, United States of AmericaOregon Health and Science UniversityPortland, ORUnited States of America
| | - Gregory A Dahlem
- Department of Biological Sciences, Northern Kentucky University, Highland Heights, KY, United States of AmericaDepartment of Biological Sciences, Northern Kentucky UniversityHighland Heights, KYUnited States of America
| | - James D. J. Gilbert
- Department of Biological and Marine Sciences, University of Hull, Hull, United KingdomDepartment of Biological and Marine Sciences, University of HullHullUnited Kingdom
| | - Akito Y. Kawahara
- Florida Museum of Natural History, University of Florida, Gainesville, FL, United States of AmericaFlorida Museum of Natural History, University of FloridaGainesville, FLUnited States of America
- Entomology and Nematology Department, University of Florida, Gainesville, FL, United States of AmericaEntomology and Nematology Department, University of FloridaGainesville, FLUnited States of America
| | - Oliver Keller
- Entomology and Nematology Department, University of Florida, Gainesville, FL, United States of AmericaEntomology and Nematology Department, University of FloridaGainesville, FLUnited States of America
| | - Andrea Lucky
- Entomology and Nematology Department, University of Florida, Gainesville, FL, United States of AmericaEntomology and Nematology Department, University of FloridaGainesville, FLUnited States of America
| | - Peter J. Mayhew
- Department of Biology, University of York, York, United KingdomDepartment of Biology, University of YorkYorkUnited Kingdom
| | - David Plotkin
- Florida Museum of Natural History, University of Florida, Gainesville, FL, United States of AmericaFlorida Museum of Natural History, University of FloridaGainesville, FLUnited States of America
| | | | - Elijah Talamas
- Florida Department of Agriculture and Consumer Services, Gainesville, FL, United States of AmericaFlorida Department of Agriculture and Consumer ServicesGainesville, FLUnited States of America
| | - Gaurav Vaidya
- Florida Museum of Natural History, University of Florida, Gainesville, FL, United States of AmericaFlorida Museum of Natural History, University of FloridaGainesville, FLUnited States of America
| | - Ramona Walls
- Bio5 and CyVerse, University of Arizona, Tucson, AZ, United States of AmericaBio5 and CyVerse, University of ArizonaTucson, AZUnited States of America
| | - Matt Yoder
- Species File Group, Illinois Natural History Survey, University of Illinois, Champaign, IL, United States of AmericaSpecies File Group, Illinois Natural History Survey, University of IllinoisChampaign, ILUnited States of America
| | - Guanyang Zhang
- Florida Museum of Natural History, University of Florida, Gainesville, FL, United States of AmericaFlorida Museum of Natural History, University of FloridaGainesville, FLUnited States of America
| | - Rob Guralnick
- Florida Museum of Natural History, University of Florida, Gainesville, FL, United States of AmericaFlorida Museum of Natural History, University of FloridaGainesville, FLUnited States of America
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14
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Ingenloff K, Hensz CM, Anamza T, Barve V, Campbell LP, Cooper JC, Komp E, Jimenez L, Olson KV, Osorio-Olvera L, Owens HL, Peterson AT, Samy AM, Simões M, Soberón J. Predictable invasion dynamics in North American populations of the Eurasian collared dove Streptopelia decaocto. Proc Biol Sci 2018; 284:rspb.2017.1157. [PMID: 28878061 DOI: 10.1098/rspb.2017.1157] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2017] [Accepted: 07/28/2017] [Indexed: 11/12/2022] Open
Abstract
Species invasions represent a significant dimension of global change yet the dynamics of invasions remain poorly understood and are considered rather unpredictable. We explored interannual dynamics of the invasion process in the Eurasian collared dove (Streptopelia decaocto) and tested whether the advance of the invasion front of the species in North America relates to centrality (versus peripherality) within its estimated fundamental ecological niche. We used ecological niche modelling approaches to estimate the dimensions of the fundamental ecological niche on the Old World distribution of the species, and then transferred that model to the New World as measures of centrality versus peripherality within the niche for the species. Although our hypothesis was that the invasion front would advance faster over more favourable (i.e. more central) conditions, the reverse was the case: the invasion expanded faster in areas presenting less favourable (i.e. more peripheral) conditions for the species as it advanced across North America. This result offers a first view of a predictive approach to the dynamics of species' invasions, and thereby has relevant implications for the management of invasive species, as such a predictive understanding would allow better anticipation of coming steps and advances in the progress of invasions, important to designing and guiding effective remediation and mitigation efforts.
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Affiliation(s)
- Kathryn Ingenloff
- Biodiversity Institute, University of Kansas, Lawrence, KS 66045, USA
| | | | - Tashitso Anamza
- Biodiversity Institute, University of Kansas, Lawrence, KS 66045, USA
| | - Vijay Barve
- Biodiversity Institute, University of Kansas, Lawrence, KS 66045, USA
| | | | - Jacob C Cooper
- Biodiversity Institute, University of Kansas, Lawrence, KS 66045, USA
| | - Ed Komp
- Biodiversity Institute, University of Kansas, Lawrence, KS 66045, USA
| | - Laura Jimenez
- Biodiversity Institute, University of Kansas, Lawrence, KS 66045, USA
| | - Karen V Olson
- Biodiversity Institute, University of Kansas, Lawrence, KS 66045, USA
| | | | - Hannah L Owens
- Biodiversity Institute, University of Kansas, Lawrence, KS 66045, USA
| | | | - Abdallah M Samy
- Biodiversity Institute, University of Kansas, Lawrence, KS 66045, USA
| | - Marianna Simões
- Biodiversity Institute, University of Kansas, Lawrence, KS 66045, USA
| | - Jorge Soberón
- Biodiversity Institute, University of Kansas, Lawrence, KS 66045, USA
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15
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Abstract
UNLABELLED Biodiversity studies are relying increasingly on primary biodiversity records (PBRs) for modelling and analysis. Because biodiversity data are frequently 'harvested'-i.e. not collected by the researcher for that particular study, but obtained from data aggregators such as the Global Biodiversity Information Facility-researchers need to be aware of strengths and weaknesses of their data before they venture into further analysis. R is becoming a lingua franca of data exploration and analysis. Here, we describe an R package, bdvis, which facilitates efforts to understand the gaps and strengths of PBR data with quick and useful visualization functions. AVAILABILITY AND IMPLEMENTATION The full code of the R package bdvis, along with instructions on how to install and use it, is available via CRAN - The Comprehensive R Archive Network (http://cran.r-project.org/web/packages/bdvis/index.html) and in the corresponding author's main GitHub repository: http://www.github.com/vijaybarve/bdvis The source code is licensed under CC0 CONTACT: vijay.barve@gmail.com.
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Affiliation(s)
- Vijay Barve
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Javier Otegui
- University of Colorado Museum of Natural History, Boulder, CO, USA
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16
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Manthey JD, Campbell LP, Saupe EE, Soberón J, Hensz CM, Myers CE, Owens HL, Ingenloff K, Peterson AT, Barve N, Lira-Noriega A, Barve V. A test of niche centrality as a determinant of population trends and conservation status in threatened and endangered North American birds. ENDANGER SPECIES RES 2015. [DOI: 10.3354/esr00646] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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18
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Morris RA, Barve V, Carausu M, Chavan V, Cuadra J, Freeland C, Hagedorn G, Leary P, Mozzherin D, Olson A, Riccardi G, Teage I, Whitbread G. Discovery and publishing of primary biodiversity data associated with multimedia resources: The Audubon Core strategies and approaches. Biodiv Inf 2013. [DOI: 10.17161/bi.v8i2.4117] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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