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For: Kapli P, Lutteropp S, Zhang J, Kobert K, Pavlidis P, Stamatakis A, Flouri T. Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo. Bioinformatics 2017;33:1630-1638. [PMID: 28108445 PMCID: PMC5447239 DOI: 10.1093/bioinformatics/btx025] [Citation(s) in RCA: 302] [Impact Index Per Article: 37.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2016] [Revised: 12/27/2016] [Accepted: 01/17/2017] [Indexed: 11/15/2022]  Open
Number Cited by Other Article(s)
251
Bolotov IN, Konopleva ES, Vikhrev IV, Gofarov MY, Lopes-Lima M, Bogan AE, Lunn Z, Chan N, Win T, Aksenova OV, Tomilova AA, Tanmuangpak K, Tumpeesuwan S, Kondakov AV. New freshwater mussel taxa discoveries clarify biogeographic division of Southeast Asia. Sci Rep 2020;10:6616. [PMID: 32313058 PMCID: PMC7171101 DOI: 10.1038/s41598-020-63612-5] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2019] [Accepted: 03/31/2020] [Indexed: 01/22/2023]  Open
252
Limmon G, Delrieu-Trottin E, Patikawa J, Rijoly F, Dahruddin H, Busson F, Steinke D, Hubert N. Assessing species diversity of Coral Triangle artisanal fisheries: A DNA barcode reference library for the shore fishes retailed at Ambon harbor (Indonesia). Ecol Evol 2020;10:3356-3366. [PMID: 32273993 PMCID: PMC7141007 DOI: 10.1002/ece3.6128] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Revised: 01/30/2020] [Accepted: 02/03/2020] [Indexed: 01/01/2023]  Open
253
Sholihah A, Delrieu-Trottin E, Sukmono T, Dahruddin H, Risdawati R, Elvyra R, Wibowo A, Kustiati K, Busson F, Sauri S, Nurhaman U, Dounias E, Zein MSA, Fitriana Y, Utama IV, Muchlisin ZA, Agnèse JF, Hanner R, Wowor D, Steinke D, Keith P, Rüber L, Hubert N. Disentangling the taxonomy of the subfamily Rasborinae (Cypriniformes, Danionidae) in Sundaland using DNA barcodes. Sci Rep 2020;10:2818. [PMID: 32071342 PMCID: PMC7028728 DOI: 10.1038/s41598-020-59544-9] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2019] [Accepted: 01/20/2020] [Indexed: 11/25/2022]  Open
254
Garces JM, Sartori M, Freitag H. Integrative taxonomy of the genus Dudgeodes Sartori, 2008 (Insecta, Ephemeroptera, Teloganodidae) from the Philippines with description of new species and supplementary descriptions of Southeast Asian species. Zookeys 2020;910:93-129. [PMID: 32099517 PMCID: PMC7026199 DOI: 10.3897/zookeys.910.48659] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2019] [Accepted: 01/05/2020] [Indexed: 11/12/2022]  Open
255
Integrative systematics and ecology of a new deep-sea family of tanaidacean crustaceans. Sci Rep 2019;9:18720. [PMID: 31822695 PMCID: PMC6904764 DOI: 10.1038/s41598-019-53446-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2018] [Accepted: 10/31/2019] [Indexed: 11/10/2022]  Open
256
Srivathsan A, Hartop E, Puniamoorthy J, Lee WT, Kutty SN, Kurina O, Meier R. Rapid, large-scale species discovery in hyperdiverse taxa using 1D MinION sequencing. BMC Biol 2019;17:96. [PMID: 31783752 PMCID: PMC6884855 DOI: 10.1186/s12915-019-0706-9] [Citation(s) in RCA: 57] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2019] [Accepted: 10/09/2019] [Indexed: 11/28/2022]  Open
257
Valdez-Mondragón A, Navarro-Rodríguez CI, Solís-Catalán KP, Cortez-Roldán MR, Juárez-Sánchez AR. Under an integrative taxonomic approach: the description of a new species of the genus Loxosceles (Araneae, Sicariidae) from Mexico City. Zookeys 2019;892:93-133. [PMID: 31824205 PMCID: PMC6892964 DOI: 10.3897/zookeys.892.39558] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2019] [Accepted: 10/04/2019] [Indexed: 10/31/2022]  Open
258
Bolotov IN, Klass AL, Kondakov AV, Vikhrev IV, Bespalaya YV, Gofarov MY, Filippov BY, Bogan AE, Lopes-Lima M, Lunn Z, Chan N, Aksenova OV, Dvoryankin GA, Chapurina YE, Kim SK, Kolosova YS, Konopleva ES, Lee JH, Makhrov AA, Palatov DM, Sayenko EM, Spitsyn VM, Sokolova SE, Tomilova AA, Win T, Zubrii NA, Vinarski MV. Freshwater mussels house a diverse mussel-associated leech assemblage. Sci Rep 2019;9:16449. [PMID: 31712612 PMCID: PMC6848535 DOI: 10.1038/s41598-019-52688-3] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2019] [Accepted: 10/18/2019] [Indexed: 01/26/2023]  Open
259
Jossart Q, Sands CJ, Sewell MA. Dwarf brooder versus giant broadcaster: combining genetic and reproductive data to unravel cryptic diversity in an Antarctic brittle star. Heredity (Edinb) 2019;123:622-633. [PMID: 31073238 PMCID: PMC6972741 DOI: 10.1038/s41437-019-0228-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2018] [Revised: 04/08/2019] [Accepted: 04/18/2019] [Indexed: 11/09/2022]  Open
260
Rimington WR, Pressel S, Duckett JG, Field KJ, Bidartondo MI. Evolution and networks in ancient and widespread symbioses between Mucoromycotina and liverworts. MYCORRHIZA 2019;29:551-565. [PMID: 31720838 PMCID: PMC6890582 DOI: 10.1007/s00572-019-00918-x] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2019] [Accepted: 09/13/2019] [Indexed: 05/09/2023]
261
Worsaae K, Kerbl A, Vang Á, Gonzalez BC. Broad North Atlantic distribution of a meiobenthic annelid - against all odds. Sci Rep 2019;9:15497. [PMID: 31664164 PMCID: PMC6820731 DOI: 10.1038/s41598-019-51765-x] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Accepted: 09/30/2019] [Indexed: 01/10/2023]  Open
262
Serdari D, Kostaki EG, Paraskevis D, Stamatakis A, Kapli P. Automated, phylogeny-based genotype delimitation of the Hepatitis Viruses HBV and HCV. PeerJ 2019;7:e7754. [PMID: 31667012 PMCID: PMC6816385 DOI: 10.7717/peerj.7754] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2019] [Accepted: 08/26/2019] [Indexed: 12/15/2022]  Open
263
Pfingstl T, Baumann J, Lienhard A. The Caribbean enigma: the presence of unusual cryptic diversity in intertidal mites (Arachnida, Acari, Oribatida). ORG DIVERS EVOL 2019;19:609-623. [PMID: 31885493 PMCID: PMC6913133 DOI: 10.1007/s13127-019-00416-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2018] [Accepted: 08/22/2019] [Indexed: 01/25/2023]
264
Haponski AE, Ó Foighil D. Phylogenomic analyses confirm a novel invasive North American Corbicula (Bivalvia: Cyrenidae) lineage. PeerJ 2019;7:e7484. [PMID: 31497390 PMCID: PMC6708575 DOI: 10.7717/peerj.7484] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2019] [Accepted: 07/15/2019] [Indexed: 11/20/2022]  Open
265
Potapov GS, Kondakov AV, Filippov BY, Gofarov MY, Kolosova YS, Spitsyn VM, Tomilova AA, Zubrii NA, Bolotov IN. Pollinators on the polar edge of the Ecumene: taxonomy, phylogeography, and ecology of bumble bees from Novaya Zemlya. Zookeys 2019;866:85-115. [PMID: 31388324 PMCID: PMC6669216 DOI: 10.3897/zookeys.866.35084] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2019] [Accepted: 06/15/2019] [Indexed: 11/22/2022]  Open
266
Moreau C, Danis B, Jossart Q, Eléaume M, Sands C, Achaz G, Agüera A, Saucède T. Is reproductive strategy a key factor in understanding the evolutionary history of Southern Ocean Asteroidea (Echinodermata)? Ecol Evol 2019;9:8465-8478. [PMID: 31410254 PMCID: PMC6686340 DOI: 10.1002/ece3.5280] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2019] [Accepted: 05/04/2019] [Indexed: 12/12/2022]  Open
267
Poveda-Martínez D, Aguirre MB, Logarzo G, Calderón L, de la Colina A, Hight S, Triapitsyn S, Diaz-Soltero H, Hasson E. Untangling the Hypogeococcus pungens species complex (Hemiptera: Pseudococcidae) for Argentina, Australia, and Puerto Rico based on host plant associations and genetic evidence. PLoS One 2019;14:e0220366. [PMID: 31344099 PMCID: PMC6657911 DOI: 10.1371/journal.pone.0220366] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Accepted: 07/15/2019] [Indexed: 11/18/2022]  Open
268
Cozzarolo CS, Balke M, Buerki S, Arrigo N, Pitteloud C, Gueuning M, Salamin N, Sartori M, Alvarez N. Biogeography and Ecological Diversification of a Mayfly Clade in New Guinea. Front Ecol Evol 2019. [DOI: 10.3389/fevo.2019.00233] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
269
Rahman MM, Norén M, Mollah AR, Kullander SO. Building a DNA barcode library for the freshwater fishes of Bangladesh. Sci Rep 2019;9:9382. [PMID: 31253861 PMCID: PMC6599201 DOI: 10.1038/s41598-019-45379-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2018] [Accepted: 06/03/2019] [Indexed: 01/24/2023]  Open
270
Schyra J, Gbenyedji JNBK, Korb J. A comparison of termite assemblages from West African savannah and forest ecosystems using morphological and molecular markers. PLoS One 2019;14:e0216986. [PMID: 31166963 PMCID: PMC6550446 DOI: 10.1371/journal.pone.0216986] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2018] [Accepted: 05/03/2019] [Indexed: 11/28/2022]  Open
271
Gladstone NS, Niemiller ML, Pieper EB, Dooley K, McKinney ML. Morphometrics and phylogeography of the cave-obligate land snail Helicodiscus barri (Gastropoda, Stylommatophora, Helicodiscidae). SUBTERRANEAN BIOLOGY 2019. [DOI: 10.3897/subtbiol.30.35321] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
272
Jablonski D, Kukushkin OV, Avcı A, Bunyatova S, Kumlutaş Y, Ilgaz Ç, Polyakova E, Shiryaev K, Tuniyev B, Jandzik D. The biogeography of Elaphe sauromates (Pallas, 1814), with a description of a new rat snake species. PeerJ 2019;7:e6944. [PMID: 31179175 PMCID: PMC6544014 DOI: 10.7717/peerj.6944] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2019] [Accepted: 04/12/2019] [Indexed: 12/02/2022]  Open
273
Lee TRC, Anderson SJ, Tran-Nguyen LTT, Sallam N, Le Ru BP, Conlong D, Powell K, Ward A, Mitchell A. Towards a global DNA barcode reference library for quarantine identifications of lepidopteran stemborers, with an emphasis on sugarcane pests. Sci Rep 2019;9:7039. [PMID: 31065024 PMCID: PMC6504866 DOI: 10.1038/s41598-019-42995-0] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2018] [Accepted: 04/05/2019] [Indexed: 11/09/2022]  Open
274
Atherton S, Jondelius U. A taxonomic review and revisions of Microstomidae (Platyhelminthes: Macrostomorpha). PLoS One 2019;14:e0212073. [PMID: 31017906 PMCID: PMC6481776 DOI: 10.1371/journal.pone.0212073] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2018] [Accepted: 01/22/2019] [Indexed: 11/18/2022]  Open
275
Aguado MT, Capa M, Lago-Barcia D, Gil J, Pleijel F, Nygren A. Species delimitation in Amblyosyllis (Annelida, Syllidae). PLoS One 2019;14:e0214211. [PMID: 30970025 PMCID: PMC6457521 DOI: 10.1371/journal.pone.0214211] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2018] [Accepted: 03/08/2019] [Indexed: 11/19/2022]  Open
276
Chapman PA, Cribb TH, Flint M, Traub RJ, Blair D, Kyaw-Tanner MT, Mills PC. Spirorchiidiasis in marine turtles: the current state of knowledge. DISEASES OF AQUATIC ORGANISMS 2019;133:217-245. [PMID: 31187736 DOI: 10.3354/dao03348] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
277
Dalstein V, Eberle J, Fabrizi S, Etzbauer C, Ahrens D. COI-based species delimitation in Indochinese Tetraserica chafers reveal hybridisation despite strong divergence in male copulation organs. ORG DIVERS EVOL 2019. [DOI: 10.1007/s13127-019-00398-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
278
Bittencourt PS, Campos Z, Muniz FDL, Marioni B, Souza BC, Da Silveira R, de Thoisy B, Hrbek T, Farias IP. Evidence of cryptic lineages within a small South American crocodilian: the Schneider's dwarf caiman Paleosuchus trigonatus (Alligatoridae: Caimaninae). PeerJ 2019;7:e6580. [PMID: 30931177 PMCID: PMC6433001 DOI: 10.7717/peerj.6580] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2018] [Accepted: 02/01/2019] [Indexed: 11/25/2022]  Open
279
Bernardo PH, Sánchez-Ramírez S, Sánchez-Pacheco SJ, Álvarez-Castañeda ST, Aguilera-Miller EF, Mendez-de la Cruz FR, Murphy RW. Extreme mito-nuclear discordance in a peninsular lizard: the role of drift, selection, and climate. Heredity (Edinb) 2019;123:359-370. [PMID: 30833746 PMCID: PMC6781153 DOI: 10.1038/s41437-019-0204-4] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2018] [Revised: 02/13/2019] [Accepted: 02/18/2019] [Indexed: 12/22/2022]  Open
280
Aghová T, Palupčíková K, Šumbera R, Frynta D, Lavrenchenko LA, Meheretu Y, Sádlová J, Votýpka J, Mbau JS, Modrý D, Bryja J. Multiple radiations of spiny mice (Rodentia: Acomys) in dry open habitats of Afro-Arabia: evidence from a multi-locus phylogeny. BMC Evol Biol 2019;19:69. [PMID: 30832573 PMCID: PMC6399835 DOI: 10.1186/s12862-019-1380-9] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2018] [Accepted: 02/01/2019] [Indexed: 01/02/2023]  Open
281
Hofmann EP, Nicholson KE, Luque-Montes IR, Köhler G, Cerrato-Mendoza CA, Medina-Flores M, Wilson LD, Townsend JH. Cryptic Diversity, but to What Extent? Discordance Between Single-Locus Species Delimitation Methods Within Mainland Anoles (Squamata: Dactyloidae) of Northern Central America. Front Genet 2019;10:11. [PMID: 30804976 PMCID: PMC6378269 DOI: 10.3389/fgene.2019.00011] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2018] [Accepted: 01/11/2019] [Indexed: 01/10/2023]  Open
282
Čandek K, Agnarsson I, Binford GJ, Kuntner M. Biogeography of the Caribbean Cyrtognatha spiders. Sci Rep 2019;9:397. [PMID: 30674906 PMCID: PMC6344596 DOI: 10.1038/s41598-018-36590-y] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2018] [Accepted: 11/01/2018] [Indexed: 12/18/2022]  Open
283
Korb J, Kasseney BD, Cakpo YT, Casalla Daza RH, Gbenyedji JNKB, Ilboudo ME, Josens G, Koné NA, Meusemann K, Ndiaye AB, Okweche SI, Poulsen M, Roisin Y, Sankara F. Termite Taxonomy, Challenges and Prospects: West Africa, A Case Example. INSECTS 2019;10:E32. [PMID: 30654506 PMCID: PMC6369426 DOI: 10.3390/insects10010032] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/23/2018] [Revised: 01/08/2019] [Accepted: 01/09/2019] [Indexed: 11/17/2022]
284
Suárez-Villota EY, Quercia CA, Díaz LM, Vera-Sovier V, Nuñez JJ. Speciation in a biodiversity hotspot: Phylogenetic relationships, species delimitation, and divergence times of Patagonian ground frogs from the Eupsophus roseus group (Alsodidae). PLoS One 2018;13:e0204968. [PMID: 30543633 PMCID: PMC6292574 DOI: 10.1371/journal.pone.0204968] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2018] [Accepted: 11/27/2018] [Indexed: 11/19/2022]  Open
285
Hubka V, Barrs V, Dudová Z, Sklenář F, Kubátová A, Matsuzawa T, Yaguchi T, Horie Y, Nováková A, Frisvad J, Talbot J, Kolařík M. Unravelling species boundaries in the Aspergillus viridinutans complex (section Fumigati): opportunistic human and animal pathogens capable of interspecific hybridization. PERSOONIA 2018;41:142-174. [PMID: 30728603 PMCID: PMC6344812 DOI: 10.3767/persoonia.2018.41.08] [Citation(s) in RCA: 49] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/28/2018] [Accepted: 03/14/2018] [Indexed: 12/13/2022]
286
Crespo LC, Domènech M, Enguídanos A, Malumbres-Olarte J, Cardoso P, Moya-Laraño J, Frías-López C, Macías-Hernández N, De Mas E, Mazzuca P, Mora E, Opatova V, Planas E, Ribera C, Roca-Cusachs M, Ruiz D, Sousa P, Tonzo V, Arnedo MA. A DNA barcode-assisted annotated checklist of the spider (Arachnida, Araneae) communities associated to white oak woodlands in Spanish National Parks. Biodivers Data J 2018;6:e29443. [PMID: 30532624 PMCID: PMC6284012 DOI: 10.3897/bdj.6.e29443] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2018] [Accepted: 11/08/2018] [Indexed: 12/20/2022]  Open
287
Luo A, Ling C, Ho SYW, Zhu CD. Comparison of Methods for Molecular Species Delimitation Across a Range of Speciation Scenarios. Syst Biol 2018;67:830-846. [PMID: 29462495 PMCID: PMC6101526 DOI: 10.1093/sysbio/syy011] [Citation(s) in RCA: 220] [Impact Index Per Article: 31.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2017] [Accepted: 02/10/2018] [Indexed: 11/14/2022]  Open
288
Perdices A, Ozeren CS, Erkakan F, Freyhof J. Diversity of spined loaches from Asia Minor in a phylogenetic context (Teleostei: Cobitidae). PLoS One 2018;13:e0205678. [PMID: 30308027 PMCID: PMC6181420 DOI: 10.1371/journal.pone.0205678] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2018] [Accepted: 09/29/2018] [Indexed: 11/19/2022]  Open
289
Rimington WR, Pressel S, Duckett JG, Field KJ, Read DJ, Bidartondo MI. Ancient plants with ancient fungi: liverworts associate with early-diverging arbuscular mycorrhizal fungi. Proc Biol Sci 2018;285:20181600. [PMID: 30305437 PMCID: PMC6191707 DOI: 10.1098/rspb.2018.1600] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2018] [Accepted: 09/21/2018] [Indexed: 01/12/2023]  Open
290
Bourke BP, Conn JE, de Oliveira TMP, Chaves LSM, Bergo ES, Laporta GZ, Sallum MAM. Exploring malaria vector diversity on the Amazon Frontier. Malar J 2018;17:342. [PMID: 30261932 PMCID: PMC6161421 DOI: 10.1186/s12936-018-2483-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2018] [Accepted: 09/10/2018] [Indexed: 12/16/2022]  Open
291
Aksenova OV, Bolotov IN, Gofarov MY, Kondakov AV, Vinarski MV, Bespalaya YV, Kolosova YS, Palatov DM, Sokolova SE, Spitsyn VM, Tomilova AA, Travina OV, Vikhrev IV. Species Richness, Molecular Taxonomy and Biogeography of the Radicine Pond Snails (Gastropoda: Lymnaeidae) in the Old World. Sci Rep 2018;8:11199. [PMID: 30046044 PMCID: PMC6060155 DOI: 10.1038/s41598-018-29451-1] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2018] [Accepted: 07/12/2018] [Indexed: 11/09/2022]  Open
292
Thézé J, Lopez-Vaamonde C, Cory JS, Herniou EA. Biodiversity, Evolution and Ecological Specialization of Baculoviruses: A Treasure Trove for Future Applied Research. Viruses 2018;10:E366. [PMID: 29997344 PMCID: PMC6071083 DOI: 10.3390/v10070366] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2018] [Revised: 07/02/2018] [Accepted: 07/05/2018] [Indexed: 11/16/2022]  Open
293
Modha S, Thanki AS, Cotmore SF, Davison AJ, Hughes J. ViCTree: an automated framework for taxonomic classification from protein sequences. Bioinformatics 2018;34:2195-2200. [PMID: 29474519 PMCID: PMC6022645 DOI: 10.1093/bioinformatics/bty099] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2017] [Revised: 01/08/2018] [Accepted: 02/20/2018] [Indexed: 11/14/2022]  Open
294
Bacela-Spychalska K, Wróblewski P, Mamos T, Grabowski M, Rigaud T, Wattier R, Rewicz T, Konopacka A, Ovcharenko M. Europe-wide reassessment of Dictyocoela (Microsporidia) infecting native and invasive amphipods (Crustacea): molecular versus ultrastructural traits. Sci Rep 2018;8:8945. [PMID: 29895884 PMCID: PMC5997659 DOI: 10.1038/s41598-018-26879-3] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2018] [Accepted: 05/17/2018] [Indexed: 11/11/2022]  Open
295
Machado VN, Collins RA, Ota RP, Andrade MC, Farias IP, Hrbek T. One thousand DNA barcodes of piranhas and pacus reveal geographic structure and unrecognised diversity in the Amazon. Sci Rep 2018;8:8387. [PMID: 29849152 PMCID: PMC5976771 DOI: 10.1038/s41598-018-26550-x] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2017] [Accepted: 05/10/2018] [Indexed: 11/25/2022]  Open
296
Sundberg H, Kruys Å, Bergsten J, Ekman S. Position specificity in the genus Coreomyces (Laboulbeniomycetes, Ascomycota). Fungal Syst Evol 2018;1:217-228. [PMID: 32490367 PMCID: PMC7259236 DOI: 10.3114/fuse.2018.01.09] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
297
Manzanilla V, Kool A, Nguyen Nhat L, Nong Van H, Le Thi Thu H, de Boer HJ. Phylogenomics and barcoding of Panax: toward the identification of ginseng species. BMC Evol Biol 2018;18:44. [PMID: 29614961 PMCID: PMC5883351 DOI: 10.1186/s12862-018-1160-y] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2017] [Accepted: 03/21/2018] [Indexed: 11/10/2022]  Open
298
Marki PZ, Fjeldså J, Irestedt M, Jønsson KA. Molecular phylogenetics and species limits in a cryptically coloured radiation of Australo-Papuan passerine birds (Pachycephalidae: Colluricincla). Mol Phylogenet Evol 2018. [PMID: 29526804 DOI: 10.1016/j.ympev.2018.02.029] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
299
Hubka V, Nováková A, Jurjević Ž, Sklenář F, Frisvad JC, Houbraken J, Arendrup MC, Jørgensen KM, Siqueira JPZ, Gené J, Kolařík M. Polyphasic data support the splitting of Aspergillus candidus into two species; proposal of Aspergillus dobrogensis sp. nov. Int J Syst Evol Microbiol 2018;68:995-1011. [PMID: 29458472 DOI: 10.1099/ijsem.0.002583] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
300
Lima SMQ, Berbel-Filho WM, Araújo TFP, Lazzarotto H, Tatarenkov A, Avise JC. Headwater Capture Evidenced by Paleo-Rivers Reconstruction and Population Genetic Structure of the Armored Catfish (Pareiorhaphis garbei) in the Serra do Mar Mountains of Southeastern Brazil. Front Genet 2017;8:199. [PMID: 29259623 PMCID: PMC5723395 DOI: 10.3389/fgene.2017.00199] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2017] [Accepted: 11/21/2017] [Indexed: 11/13/2022]  Open
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