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For: Murrell B, Moola S, Mabona A, Weighill T, Sheward D, Kosakovsky Pond SL, Scheffler K. FUBAR: a fast, unconstrained bayesian approximation for inferring selection. Mol Biol Evol 2013;30:1196-205. [PMID: 23420840 DOI: 10.1093/molbev/mst030] [Citation(s) in RCA: 929] [Impact Index Per Article: 77.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]  Open
Number Cited by Other Article(s)
251
Neves F, Muñoz-Mérida A, Machado AM, Almeida T, Gaigher A, Esteves PJ, Castro LFC, Veríssimo A. Uncovering a 500 million year old history and evidence of pseudogenization for TLR15. Front Immunol 2022;13:1020601. [PMID: 36605191 PMCID: PMC9808068 DOI: 10.3389/fimmu.2022.1020601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Accepted: 11/23/2022] [Indexed: 12/24/2022]  Open
252
Sunagar K, Khochare S, Jaglan A, Senthil S, Suranse V. Stings on wings: Proteotranscriptomic and biochemical profiling of the lesser banded hornet (Vespa affinis) venom. Front Mol Biosci 2022;9:1066793. [PMID: 36601583 PMCID: PMC9806352 DOI: 10.3389/fmolb.2022.1066793] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Accepted: 12/05/2022] [Indexed: 12/23/2022]  Open
253
Divín D, Goméz Samblas M, Kuttiyarthu Veetil N, Voukali E, Świderská Z, Krajzingrová T, Těšický M, Beneš V, Elleder D, Bartoš O, Vinkler M. Cannabinoid receptor 2 evolutionary gene loss makes parrots more susceptible to neuroinflammation. Proc Biol Sci 2022;289:20221941. [PMID: 36475439 PMCID: PMC9727682 DOI: 10.1098/rspb.2022.1941] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
254
Kumar N, Kaushik R, Singh A, Uversky VN, Zhang KYJ, Sahu U, Bhatia S, Sanyal A. Bayesian Molecular Dating Analyses Combined with Mutational Profiling Suggest an Independent Origin and Evolution of SARS-CoV-2 Omicron BA.1 and BA.2 Sub-Lineages. Viruses 2022;14:2764. [PMID: 36560768 PMCID: PMC9788409 DOI: 10.3390/v14122764] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 11/27/2022] [Accepted: 12/05/2022] [Indexed: 12/14/2022]  Open
255
Castelán-Sánchez HG, Martínez-Castilla LP, Sganzerla-Martínez G, Torres-Flores J, López-Leal G. Genome Evolution and Early Introductions of the SARS-CoV-2 Omicron Variant in Mexico. Virus Evol 2022;8:veac109. [PMID: 36582501 PMCID: PMC9793848 DOI: 10.1093/ve/veac109] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Revised: 09/15/2022] [Accepted: 11/30/2022] [Indexed: 12/04/2022]  Open
256
Cuy-Chaparro L, Ricaurte-Contreras LA, Bohórquez MD, Arévalo-Pinzón G, Barreto-Santamaria A, Pabón L, Reyes C, Moreno-Pérez DA, Patarroyo MA. Identification of Babesia bovis MSA-1 functionally constraint regions capable of binding to bovine erythrocytes. Vet Parasitol 2022;312:109834. [DOI: 10.1016/j.vetpar.2022.109834] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 09/23/2022] [Accepted: 10/19/2022] [Indexed: 11/06/2022]
257
Duque P, Vieira CP, Bastos B, Vieira J. The evolution of vitamin C biosynthesis and transport in animals. BMC Ecol Evol 2022;22:84. [PMID: 35752765 PMCID: PMC9233358 DOI: 10.1186/s12862-022-02040-7] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2021] [Accepted: 06/17/2022] [Indexed: 12/25/2022]  Open
258
Fitzpatrick LLJ, Nijman V, Ligabue-Braun R, Nekaris KAI. The Fast and the Furriest: Investigating the Rate of Selection on Mammalian Toxins. Toxins (Basel) 2022;14:toxins14120842. [PMID: 36548740 PMCID: PMC9782207 DOI: 10.3390/toxins14120842] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Revised: 11/25/2022] [Accepted: 11/26/2022] [Indexed: 12/03/2022]  Open
259
Sikazwe C, Neave MJ, Michie A, Mileto P, Wang J, Cooper N, Levy A, Imrie A, Baird RW, Currie BJ, Speers D, Mackenzie JS, Smith DW, Williams DT. Molecular detection and characterisation of the first Japanese encephalitis virus belonging to genotype IV acquired in Australia. PLoS Negl Trop Dis 2022;16:e0010754. [PMID: 36409739 PMCID: PMC9721490 DOI: 10.1371/journal.pntd.0010754] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Revised: 12/05/2022] [Accepted: 10/24/2022] [Indexed: 11/22/2022]  Open
260
De-la-Cruz IM, Kariñho-Betancourt E, Núñez-Farfán J, Oyama K. Gene family evolution and natural selection signatures in Datura spp. (Solanaceae). Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.916762] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]  Open
261
Lucaci AG, Zehr JD, Shank SD, Bouvier D, Ostrovsky A, Mei H, Nekrutenko A, Martin DP, Kosakovsky Pond SL. RASCL: Rapid Assessment of Selection in CLades through molecular sequence analysis. PLoS One 2022;17:e0275623. [PMID: 36322581 PMCID: PMC9629619 DOI: 10.1371/journal.pone.0275623] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Accepted: 09/20/2022] [Indexed: 11/06/2022]  Open
262
Navarro-Lopez R, Xu W, Gomez-Romero N, Velazquez-Salinas L, Berhane Y. Phylogenetic Inference of the 2022 Highly Pathogenic H7N3 Avian Influenza Outbreak in Northern Mexico. Pathogens 2022;11:1284. [PMID: 36365034 PMCID: PMC9692817 DOI: 10.3390/pathogens11111284] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Revised: 10/20/2022] [Accepted: 10/25/2022] [Indexed: 02/06/2024]  Open
263
Chong SL, Tan JL, Ngeow YF. The resistomes of Mycobacteroides abscessus complex and their possible acquisition from horizontal gene transfer. BMC Genomics 2022;23:715. [PMID: 36261788 PMCID: PMC9583574 DOI: 10.1186/s12864-022-08941-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 10/14/2022] [Indexed: 11/19/2022]  Open
264
Epidemiological Analysis and Genetic Characterization of Parvovirus in Ducks in Northern Vietnam Reveal Evidence of Recombination. Animals (Basel) 2022;12:ani12202846. [PMID: 36290232 PMCID: PMC9597789 DOI: 10.3390/ani12202846] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Revised: 10/02/2022] [Accepted: 10/17/2022] [Indexed: 11/30/2022]  Open
265
Zhao X, Hu Y, Zhao Y, Wang L, Wu Z, Soe MT, Kyaw MP, Cui L, Zhu X, Cao Y. Genetic diversity in the transmission-blocking vaccine candidate Plasmodium vivax gametocyte protein Pvs230 from the China-Myanmar border area and central Myanmar. Parasit Vectors 2022;15:371. [PMID: 36253843 PMCID: PMC9574792 DOI: 10.1186/s13071-022-05523-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Accepted: 09/27/2022] [Indexed: 11/10/2022]  Open
266
Zhao J, Pu X, Li W, Li M. Characterization and evolutionary diversification of the phospholipase D gene family in mosses. Front Genet 2022;13:1015393. [PMID: 36313445 PMCID: PMC9607936 DOI: 10.3389/fgene.2022.1015393] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2022] [Accepted: 09/30/2022] [Indexed: 11/13/2022]  Open
267
Zhao D, Guo Y, Gao Y. Natural selection drives the evolution of mitogenomes in Acrossocheilus. PLoS One 2022;17:e0276056. [PMID: 36227932 PMCID: PMC9560497 DOI: 10.1371/journal.pone.0276056] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Accepted: 09/27/2022] [Indexed: 11/10/2022]  Open
268
Enterovirus 3C Protease Cleaves TRIM7 To Dampen Its Antiviral Activity. J Virol 2022;96:e0133222. [PMID: 36106874 PMCID: PMC9555159 DOI: 10.1128/jvi.01332-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
269
Luo H, Luo S, Fang W, Lin Q, Chen X, Zhou X. Genomic insight into the nocturnal adaptation of the black-crowned night heron (Nycticorax nycticorax). BMC Genomics 2022;23:683. [PMID: 36192687 PMCID: PMC9531477 DOI: 10.1186/s12864-022-08904-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Accepted: 09/20/2022] [Indexed: 11/10/2022]  Open
270
Minias P, Palomar G, Dudek K, Babik W. Salamanders reveal novel trajectories of amphibian MHC evolution. Evolution 2022;76:2436-2449. [PMID: 36000494 DOI: 10.1111/evo.14601] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Revised: 07/06/2022] [Accepted: 07/29/2022] [Indexed: 01/22/2023]
271
Oliveira MLG, Castelli EC, Veiga‐Castelli LC, Pereira ALE, Marcorin L, Carratto TMT, Souza AS, Andrade HS, Simões AL, Donadi EA, Courtin D, Sabbagh A, Giuliatti S, Mendes‐Junior CT. Genetic diversity of the LILRB1 and LILRB2 coding regions in an admixed Brazilian population sample. HLA 2022;100:325-348. [DOI: 10.1111/tan.14725] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Revised: 06/02/2022] [Accepted: 06/24/2022] [Indexed: 11/27/2022]
272
Shishir TA, Jannat T, Naser IB. Genomic surveillance unfolds the SARS-CoV-2 transmission and divergence dynamics in Bangladesh. Front Genet 2022;13:966939. [PMID: 36226176 PMCID: PMC9548531 DOI: 10.3389/fgene.2022.966939] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2022] [Accepted: 08/23/2022] [Indexed: 11/13/2022]  Open
273
Tsu BV, Agarwal R, Gokhale NS, Kulsuptrakul J, Ryan AP, Castro LK, Beierschmitt CM, Turcotte EA, Fay EJ, Vance RE, Hyde JL, Savan R, Mitchell PS, Daugherty MD. Host specific sensing of coronaviruses and picornaviruses by the CARD8 inflammasome. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2022:2022.09.21.508960. [PMID: 36172130 PMCID: PMC9516851 DOI: 10.1101/2022.09.21.508960] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
274
Oliveira JIN, Cardoso AL, Wolf IR, de Oliveira RA, Martins C. First characterization of PIWI-interacting RNA clusters in a cichlid fish with a B chromosome. BMC Biol 2022;20:204. [PMID: 36127679 PMCID: PMC9490952 DOI: 10.1186/s12915-022-01403-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Accepted: 09/06/2022] [Indexed: 11/10/2022]  Open
275
Immunoglobulin heavy constant gamma gene evolution is modulated by both the divergent and birth-and-death evolutionary models. Primates 2022;63:611-625. [DOI: 10.1007/s10329-022-01019-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2022] [Accepted: 08/31/2022] [Indexed: 11/27/2022]
276
Putaporntip C, Kuamsab N, Rojrung R, Seethamchai S, Jongwutiwes S. Structural organization and sequence diversity of the complete nucleotide sequence encoding the Plasmodium malariae merozoite surface protein-1. Sci Rep 2022;12:15591. [PMID: 36114242 PMCID: PMC9481586 DOI: 10.1038/s41598-022-19049-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Accepted: 08/23/2022] [Indexed: 11/28/2022]  Open
277
Lan Y, Sun J, Chen C, Wang H, Xiao Y, Perez M, Yang Y, Kwan YH, Sun Y, Zhou Y, Han X, Miyazaki J, Watsuji TO, Bissessur D, Qiu JW, Takai K, Qian PY. Endosymbiont population genomics sheds light on transmission mode, partner specificity, and stability of the scaly-foot snail holobiont. THE ISME JOURNAL 2022;16:2132-2143. [PMID: 35715703 PMCID: PMC9381778 DOI: 10.1038/s41396-022-01261-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/03/2021] [Revised: 05/27/2022] [Accepted: 05/30/2022] [Indexed: 11/28/2022]
278
Distinct evolutionary trajectories of SARS-CoV-2-interacting proteins in bats and primates identify important host determinants of COVID-19. Proc Natl Acad Sci U S A 2022;119:e2206610119. [PMID: 35947637 PMCID: PMC9436378 DOI: 10.1073/pnas.2206610119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]  Open
279
Yan Q, Wu K, Zeng W, Yu S, Li Y, Sun Y, Liu X, Ruan Y, Huang J, Ding H, Yi L, Zhao M, Chen J, Fan S. Historical Evolutionary Dynamics and Phylogeography Analysis of Transmissible Gastroenteritis Virus and Porcine Deltacoronavirus: Findings from 59 Suspected Swine Viral Samples from China. Int J Mol Sci 2022;23:ijms23179786. [PMID: 36077190 PMCID: PMC9456201 DOI: 10.3390/ijms23179786] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Revised: 08/14/2022] [Accepted: 08/26/2022] [Indexed: 11/16/2022]  Open
280
LaFond J, Martin KR, Dahn H, Richmond JQ, Murphy RW, Rollinson N, Savage AE. Invasive Bullfrogs Maintain MHC Polymorphism Including Alleles Associated with Chytrid Fungal Infection. Integr Comp Biol 2022;62:262-274. [PMID: 35588059 DOI: 10.1093/icb/icac044] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Revised: 04/19/2022] [Accepted: 05/16/2022] [Indexed: 11/14/2022]  Open
281
Maachi A, Donaire L, Hernando Y, Aranda MA. Genetic Differentiation and Migration Fluxes of Viruses from Melon Crops and Crop Edge Weeds. J Virol 2022;96:e0042122. [PMID: 35924924 PMCID: PMC9400485 DOI: 10.1128/jvi.00421-22] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Accepted: 07/03/2022] [Indexed: 11/20/2022]  Open
282
Vakić M, Stainton D, Delić D, Tzanetakis IE. Characterization of the first Rubus yellow net virus genome from blackberry. Virus Genes 2022;58:594-597. [PMID: 35941271 DOI: 10.1007/s11262-022-01926-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Accepted: 07/07/2022] [Indexed: 11/29/2022]
283
Clinical and genomic signatures of SARS-CoV-2 Delta breakthrough infections in New York. EBioMedicine 2022;82:104141. [PMID: 35906172 PMCID: PMC9323230 DOI: 10.1016/j.ebiom.2022.104141] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Revised: 06/15/2022] [Accepted: 06/21/2022] [Indexed: 12/20/2022]  Open
284
Evolutionary analysis of rabies virus isolates from Georgia. Arch Virol 2022;167:2293-2298. [DOI: 10.1007/s00705-022-05550-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Accepted: 06/14/2022] [Indexed: 11/02/2022]
285
Sheward DJ, Hermanus T, Murrell B, Garrett N, Abdool Karim SS, Morris L, Moore PL, Williamson C. HIV Coinfection Provides Insights for the Design of Vaccine Cocktails to Elicit Broadly Neutralizing Antibodies. J Virol 2022;96:e0032422. [PMID: 35758668 PMCID: PMC9327685 DOI: 10.1128/jvi.00324-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2022] [Accepted: 05/31/2022] [Indexed: 11/20/2022]  Open
286
Jax E, Franchini P, Sekar V, Ottenburghs J, Monné Parera D, Kellenberger RT, Magor KE, Müller I, Wikelski M, Kraus RHS. Comparative genomics of the waterfowl innate immune system. Mol Biol Evol 2022;39:6649919. [PMID: 35880574 PMCID: PMC9356732 DOI: 10.1093/molbev/msac160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
287
Evolutionary Dynamics of Foot and Mouth Disease Virus Serotype A and Its Endemic Sub-Lineage A/ASIA/Iran-05/SIS-13 in Pakistan. Viruses 2022;14:v14081634. [PMID: 35893699 PMCID: PMC9331208 DOI: 10.3390/v14081634] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Revised: 06/16/2022] [Accepted: 07/22/2022] [Indexed: 02/01/2023]  Open
288
Tan CY, Thanawongnuwech R, Arshad SS, Hassan L, Fong MWC, Ooi PT. Genotype Shift of Malaysian Porcine Circovirus 2 (PCV2) from PCV2b to PCV2d within a Decade. Animals (Basel) 2022;12:1849. [PMID: 35883396 PMCID: PMC9311952 DOI: 10.3390/ani12141849] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2022] [Revised: 07/15/2022] [Accepted: 07/19/2022] [Indexed: 12/18/2022]  Open
289
Genetic characterization and evolutionary analysis of canine parvovirus in Tangshan, China. Arch Virol 2022;167:2263-2269. [PMID: 35829824 DOI: 10.1007/s00705-022-05502-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Accepted: 04/29/2022] [Indexed: 11/02/2022]
290
Bakshi A, Rai U. In silico analyses of leptin and leptin receptor of spotted snakehead Channa punctata. PLoS One 2022;17:e0270881. [PMID: 35797380 PMCID: PMC9262212 DOI: 10.1371/journal.pone.0270881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Accepted: 06/21/2022] [Indexed: 11/24/2022]  Open
291
Wang X, Hu J, Song L, Rong E, Yang C, Chen X, Pu J, Sun H, Gao C, Burt DW, Liu J, Li N, Huang Y. Functional divergence of oligoadenylate synthetase 1 (OAS1) proteins in Tetrapods. SCIENCE CHINA. LIFE SCIENCES 2022;65:1395-1412. [PMID: 34826092 DOI: 10.1007/s11427-021-2002-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2021] [Accepted: 08/25/2021] [Indexed: 06/13/2023]
292
Foley S, Vlasova A, Marcet-Houben M, Gabaldón T, Hinman VF. Evolutionary analyses of genes in Echinodermata offer insights towards the origin of metazoan phyla. Genomics 2022;114:110431. [PMID: 35835427 PMCID: PMC9552553 DOI: 10.1016/j.ygeno.2022.110431] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2021] [Revised: 05/10/2022] [Accepted: 07/06/2022] [Indexed: 11/24/2022]
293
Rupasinghe R, Lee K, Liu X, Gauger PC, Zhang J, Martínez-López B. Molecular Evolution of Porcine Reproductive and Respiratory Syndrome Virus Field Strains from Two Swine Production Systems in the Midwestern United States from 2001 to 2020. Microbiol Spectr 2022;10:e0263421. [PMID: 35499352 PMCID: PMC9241855 DOI: 10.1128/spectrum.02634-21] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Accepted: 04/05/2022] [Indexed: 12/03/2022]  Open
294
Santos C, Mendes T, Antunes A. The genes from the pseudoautosomal region 1 (PAR1) of the mammalian sex chromosomes: Synteny, phylogeny and selection. Genomics 2022;114:110419. [PMID: 35753589 DOI: 10.1016/j.ygeno.2022.110419] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Revised: 06/10/2022] [Accepted: 06/20/2022] [Indexed: 11/04/2022]
295
Baek YG, Lee YN, Park YR, Chung DH, Kwon JH, Si YJ, Heo GB, Lee YJ, Lee DH, Lee EK. Evolution, Transmission, and Pathogenicity of High Pathogenicity Avian Influenza Virus A (H5N8) Clade 2.3.4.4, South Korea, 2014–2016. Front Vet Sci 2022;9:906944. [PMID: 35799844 PMCID: PMC9253604 DOI: 10.3389/fvets.2022.906944] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Accepted: 05/26/2022] [Indexed: 11/29/2022]  Open
296
Suranse V, Jackson TNW, Sunagar K. Contextual Constraints: Dynamic Evolution of Snake Venom Phospholipase A2. Toxins (Basel) 2022;14:toxins14060420. [PMID: 35737081 PMCID: PMC9231074 DOI: 10.3390/toxins14060420] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Revised: 05/30/2022] [Accepted: 05/31/2022] [Indexed: 11/25/2022]  Open
297
Wang W, He X, Zhang Y, Qiao Y, Shi J, Chen R, Chen J, Xiang Y, Wang Z, Chen G, Huang J, Huang T, Wei T, Mo M, Wei P. Analysis of the global origin, evolution and transmission dynamics of the emerging novel variant IBDV (A2dB1b): The accumulation of critical aa-residue mutations and commercial trade contributes to the emergence and transmission of novel variants. Transbound Emerg Dis 2022;69:e2832-e2851. [PMID: 35717667 DOI: 10.1111/tbed.14634] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2022] [Revised: 06/15/2022] [Accepted: 06/15/2022] [Indexed: 12/18/2022]
298
Tran GTH, Mai NT, Bui VN, Dao TD, Trinh DQ, Vu TTT, Le VP, Van Dong H. Duck circovirus in northern Vietnam: genetic characterization and epidemiological analysis. Arch Virol 2022;167:1871-1877. [PMID: 35716264 DOI: 10.1007/s00705-022-05501-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Accepted: 04/26/2022] [Indexed: 11/02/2022]
299
Awadi A, Suchentrunk F, Knauer F, Smith S, Tolesa Z, Ben Slimen H. Spatial diversity of MHC class II DRB exon2 sequences in North African cape hares (Lepus capensis): positive selection and climatic adaptation signals. Mamm Biol 2022. [DOI: 10.1007/s42991-022-00258-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
300
He D, Wang X, Wu H, Wang X, Yan Y, Li Y, Zhan T, Hao X, Hu J, Hu S, Liu X, Ding C, Su S, Gu M, Liu X. Genome-Wide Reassortment Analysis of Influenza A H7N9 Viruses Circulating in China during 2013-2019. Viruses 2022;14:v14061256. [PMID: 35746727 PMCID: PMC9230085 DOI: 10.3390/v14061256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Revised: 05/29/2022] [Accepted: 06/06/2022] [Indexed: 11/16/2022]  Open
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