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Gómez-Palacio A, Morinaga G, Turner PE, Micieli MV, Elnour MAB, Salim B, Surendran SN, Ramasamy R, Powell JR, Soghigian J, Gloria-Soria A. Robustness in population-structure and demographic-inference results derived from the Aedes aegypti genotyping chip and whole-genome sequencing data. G3 (BETHESDA, MD.) 2024; 14:jkae082. [PMID: 38626295 PMCID: PMC11152066 DOI: 10.1093/g3journal/jkae082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Revised: 03/04/2024] [Accepted: 04/04/2024] [Indexed: 04/18/2024]
Abstract
The mosquito Aedes aegypti is the primary vector of many human arboviruses such as dengue, yellow fever, chikungunya, and Zika, which affect millions of people worldwide. Population genetic studies on this mosquito have been important in understanding its invasion pathways and success as a vector of human disease. The Axiom aegypti1 SNP chip was developed from a sample of geographically diverse A. aegypti populations to facilitate genomic studies on this species. We evaluate the utility of the Axiom aegypti1 SNP chip for population genetics and compare it with a low-depth shotgun sequencing approach using mosquitoes from the native (Africa) and invasive ranges (outside Africa). These analyses indicate that results from the SNP chip are highly reproducible and have a higher sensitivity to capture alternative alleles than a low-coverage whole-genome sequencing approach. Although the SNP chip suffers from ascertainment bias, results from population structure, ancestry, demographic, and phylogenetic analyses using the SNP chip were congruent with those derived from low-coverage whole-genome sequencing, and consistent with previous reports on Africa and outside Africa populations using microsatellites. More importantly, we identified a subset of SNPs that can be reliably used to generate merged databases, opening the door to combined analyses. We conclude that the Axiom aegypti1 SNP chip is a convenient, more accurate, low-cost alternative to low-depth whole-genome sequencing for population genetic studies of A. aegypti that do not rely on full allelic frequency spectra. Whole-genome sequencing and SNP chip data can be easily merged, extending the usefulness of both approaches.
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Affiliation(s)
- Andrés Gómez-Palacio
- Department of Entomology, Center for Vector Biology & Zoonotic Diseases, The Connecticut Agricultural Experiment Station, 123 Huntington St., New Haven, CT 06511, USA
- Laboratorio de Investigación en Genética Evolutiva, Universidad Pedagógica y Tecnológica de Colombia, Avenida Central del Norte 39-115, Boyacá 150003, Colombia
| | - Gen Morinaga
- Faculty of Veterinary Medicine, University of Calgary, 2500 University Drive NW., Calgary, AB 2TN 1N4, Canada
| | - Paul E Turner
- Department of Ecology and Evolutionary Biology, Yale University, 165 Prospect St., New Haven, CT 06511, USA
- Quantitative Biology Institute, Yale University, 260 Whitney Ave., New Haven, CT 06511, USA
| | - Maria Victoria Micieli
- Centro de Estudios Parasitológicos y de Vectores (CEPAVE), CONICET, Universidad Nacional de la Plata, Boulevard 120 s/n between Av. 60 and Calle 64, La Plata 1900, Argentina
| | - Mohammed-Ahmed B Elnour
- Department of Parasitology and Medical Entomology, Tropical Medicine Research Institute, National Center for Research, Khartoum 11111, Sudan
| | - Bashir Salim
- Faculty of Veterinary Medicine, Department of Parasitology, University of Khartoum, Khartoum North 11111, Sudan
- Camel Research Center, King Faisal University, P.O. Box. 400, Al-Ahsa 31982, Saudi Arabia
| | | | - Ranjan Ramasamy
- Department of Zoology, University of Jaffna, Jaffna 40000, Sri Lanka
| | - Jeffrey R Powell
- Department of Ecology and Evolutionary Biology, Yale University, 165 Prospect St., New Haven, CT 06511, USA
| | - John Soghigian
- Faculty of Veterinary Medicine, University of Calgary, 2500 University Drive NW., Calgary, AB 2TN 1N4, Canada
| | - Andrea Gloria-Soria
- Department of Entomology, Center for Vector Biology & Zoonotic Diseases, The Connecticut Agricultural Experiment Station, 123 Huntington St., New Haven, CT 06511, USA
- Department of Ecology and Evolutionary Biology, Yale University, 165 Prospect St., New Haven, CT 06511, USA
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2
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Bouafou L, Makanga BK, Rahola N, Boddé M, Ngangué MF, Daron J, Berger A, Mouillaud T, Makunin A, Korlević P, Nwezeobi J, Kengne P, Paupy C, Lawniczak MKN, Ayala D. Host preference patterns in domestic and wild settings: Insights into Anopheles feeding behavior. Evol Appl 2024; 17:e13693. [PMID: 38828055 PMCID: PMC11143308 DOI: 10.1111/eva.13693] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Revised: 03/28/2024] [Accepted: 04/02/2024] [Indexed: 06/05/2024] Open
Abstract
The adaptation of Anopheles malaria vectors to domestic settings is directly linked to their ability to feed on humans. The strength of this species-habitat association is unequal across the species within the genus, with the major vectors being particularly dependent on humans. However, our understanding of how blood-feeding behavior interacts with and adapts to environmental settings, including the presence of humans, remains limited. Using a field-based approach, we first investigated Anopheles community structure and feeding behavior patterns in domestic and sylvatic settings in La Lopé National Park in Gabon, Central Africa. We characterized the preference indices using a dual-host choice sampling approach across mosquito species, habitats, and seasons. We then quantified the plastic biting behavior of mosquito species in each habitat. We collected individuals from 16 Anopheles species that exhibited significant differences in species composition and abundance between sylvatic and domestic settings. The host-seeking behavior also varied among the seven most abundant species. The general attractiveness to each host, human or animal, remained relatively constant for each species, but with significant variations between habitats across species. These variations, to more generalist and to more anthropophilic behavior, were related to seasonal changes and distance from the village, respectively. Finally, we pointed out that the host choice of major malaria vectors changed in the absence of humans, revealing a plastic feeding behavior of these species. This study highlights the effect of humans on Anopheles distribution and feeding evolution. The characterization of feeding behavior in wild and domestic settings provides opportunities to better understand the interplay between genetic determinants of host preference and ecological factors. Our findings suggest that protected areas may offer alternative thriving conditions to major malaria vectors.
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Affiliation(s)
- Lemonde Bouafou
- UMR MIVEGEC, University of Montpellier, CNRS, IRDMontpellierFrance
- CIRMFFrancevilleGabon
| | | | - Nil Rahola
- UMR MIVEGEC, University of Montpellier, CNRS, IRDMontpellierFrance
| | | | | | - Josquin Daron
- UMR MIVEGEC, University of Montpellier, CNRS, IRDMontpellierFrance
| | - Audric Berger
- UMR MIVEGEC, University of Montpellier, CNRS, IRDMontpellierFrance
| | - Theo Mouillaud
- UMR MIVEGEC, University of Montpellier, CNRS, IRDMontpellierFrance
| | | | | | | | - Pierre Kengne
- UMR MIVEGEC, University of Montpellier, CNRS, IRDMontpellierFrance
- CIRMFFrancevilleGabon
| | - Christophe Paupy
- UMR MIVEGEC, University of Montpellier, CNRS, IRDMontpellierFrance
| | | | - Diego Ayala
- UMR MIVEGEC, University of Montpellier, CNRS, IRDMontpellierFrance
- Medical Entomology UnitInstitut Pasteur de MadagascarAntananarivoMadagascar
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3
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Cosme LV, Corley M, Johnson T, Severson DW, Yan G, Wang X, Beebe N, Maynard A, Bonizzoni M, Khorramnejad A, Martins AJ, Lima JBP, Munstermann LE, Surendran SN, Chen CH, Maringer K, Wahid I, Mukherjee S, Xu J, Fontaine MC, Estallo EL, Stein M, Livdahl T, Scaraffia PY, Carter BH, Mogi M, Tuno N, Mains JW, Medley KA, Bowles DE, Gill RJ, Eritja R, González-Obando R, Trang HTT, Boyer S, Abunyewa AM, Hackett K, Wu T, Nguyễn J, Shen J, Zhao H, Crawford JE, Armbruster P, Caccone A. A genotyping array for the globally invasive vector mosquito, Aedes albopictus. Parasit Vectors 2024; 17:106. [PMID: 38439081 PMCID: PMC10910840 DOI: 10.1186/s13071-024-06158-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Accepted: 01/24/2024] [Indexed: 03/06/2024] Open
Abstract
BACKGROUND Although whole-genome sequencing (WGS) is the preferred genotyping method for most genomic analyses, limitations are often experienced when studying genomes characterized by a high percentage of repetitive elements, high linkage, and recombination deserts. The Asian tiger mosquito (Aedes albopictus), for example, has a genome comprising up to 72% repetitive elements, and therefore we set out to develop a single-nucleotide polymorphism (SNP) chip to be more cost-effective. Aedes albopictus is an invasive species originating from Southeast Asia that has recently spread around the world and is a vector for many human diseases. Developing an accessible genotyping platform is essential in advancing biological control methods and understanding the population dynamics of this pest species, with significant implications for public health. METHODS We designed a SNP chip for Ae. albopictus (Aealbo chip) based on approximately 2.7 million SNPs identified using WGS data from 819 worldwide samples. We validated the chip using laboratory single-pair crosses, comparing technical replicates, and comparing genotypes of samples genotyped by WGS and the SNP chip. We then used the chip for a population genomic analysis of 237 samples from 28 sites in the native range to evaluate its usefulness in describing patterns of genomic variation and tracing the origins of invasions. RESULTS Probes on the Aealbo chip targeted 175,396 SNPs in coding and non-coding regions across all three chromosomes, with a density of 102 SNPs per 1 Mb window, and at least one SNP in each of the 17,461 protein-coding genes. Overall, 70% of the probes captured the genetic variation. Segregation analysis found that 98% of the SNPs followed expectations of single-copy Mendelian genes. Comparisons with WGS indicated that sites with genotype disagreements were mostly heterozygotes at loci with WGS read depth < 20, while there was near complete agreement with WGS read depths > 20, indicating that the chip more accurately detects heterozygotes than low-coverage WGS. Sample sizes did not affect the accuracy of the SNP chip genotype calls. Ancestry analyses identified four to five genetic clusters in the native range with various levels of admixture. CONCLUSIONS The Aealbo chip is highly accurate, is concordant with genotypes from WGS with high sequence coverage, and may be more accurate than low-coverage WGS.
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Affiliation(s)
- Luciano Veiga Cosme
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06520-8105, USA.
| | - Margaret Corley
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06520-8105, USA
| | - Thomas Johnson
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06520-8105, USA
| | - Dave W Severson
- Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, USA
| | - Guiyun Yan
- Department of Population Health and Disease Prevention, University of California, Irvine, CA, USA
| | - Xiaoming Wang
- Department of Population Health and Disease Prevention, University of California, Irvine, CA, USA
| | - Nigel Beebe
- School of the Environment, University of Queensland Australia, St Lucia, Australia
| | - Andrew Maynard
- School of the Environment, University of Queensland Australia, St Lucia, Australia
| | - Mariangela Bonizzoni
- Department of Biology and Biotechnology "Lazzaro Spallanzani", University of Pavia, Pavia, Italy
| | - Ayda Khorramnejad
- Department of Biology and Biotechnology "Lazzaro Spallanzani", University of Pavia, Pavia, Italy
| | - Ademir Jesus Martins
- Laboratório de Fisiologia e Controle de Artrópodes Vetores, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, RJ, Brazil
| | - José Bento Pereira Lima
- Laboratório de Fisiologia e Controle de Artrópodes Vetores, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, RJ, Brazil
| | - Leonard E Munstermann
- Yale School of Public Health and Yale Peabody Museum, Yale University, New Haven, CT, USA
| | | | - Chun-Hong Chen
- National Health Research Institutes, National Mosquito-Borne Disease Control Research Center & National Institute of Infectious Diseases and Vaccinology, Miaoli, Taiwan
| | | | - Isra Wahid
- Center for Zoonotic and Emerging Diseases, Hasanuddin University Medical Research Centre (HUMRC), Makassar, Indonesia
| | - Shomen Mukherjee
- Mitrani Department of Desert Ecology, Jacob Blaustein Institutes of Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, Israel
- Biological and Life Sciences Division, School of Arts and Sciences, Ahmedabad University, Ahmedabad, Gujarat, India
| | - Jiannon Xu
- Department of Biology, New Mexico State University, Las Cruces, NM, USA
| | - Michael C Fontaine
- MIVEGEC, Université de Montpellier, CNRS, IRD, Montpellier, France
- University of Groningen, Groningen Institute for Evolutionary Life Sciences, Groningen, The Netherlands
| | - Elizabet L Estallo
- Facultad de Ciencias Exactas, Físicas y Naturales, Centro de Investigaciones Entomológicas de Córdoba, Universidad Nacional de Córdoba, Córdoba, Argentina
- Instituto de Investigaciones Biológicas y Tecnológicas, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de Córdoba, Córdoba, Argentina
| | - Marina Stein
- Instituto de Medicina Regional, Universidad Nacional del Nordeste, CONICET CCT Nordeste, Resistencia, Argentina
| | | | - Patricia Y Scaraffia
- School of Public Health and Tropical Medicine, Tulane University, New Orleans, LA, USA
| | - Brendan H Carter
- School of Public Health and Tropical Medicine, Tulane University, New Orleans, LA, USA
| | - Motoyoshi Mogi
- Division of Parasitology, Faculty of Medicine, Saga University, Nabeshima, Saga, Japan
| | - Nobuko Tuno
- Laboratory of Ecology, Graduate School of Natural Science and Technology, Kanazawa University, Kanazawa, Japan
| | | | - Kim A Medley
- Tyson Research Center, Washington University in St. Louis, St. Louis, USA
| | | | - Richard J Gill
- Department of Life Sciences, Georgina Mace Centre for the Living Planet, Imperial College London, Berkshire, UK
| | - Roger Eritja
- Centre d'Estudis Avançats de Blanes, Consejo Superior de Investigaciones Científicas, Blanes, Spain
| | | | - Huynh T T Trang
- Department of Medical Entomology and Zoonotics, Pasteur Institute in Ho Chi Minh City, Ho Chi Minh City, Vietnam
| | - Sébastien Boyer
- Medical Entomology Unit, Institut Pasteur du Cambodge, Phnom Penh, Cambodia
| | - Ann-Marie Abunyewa
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06520-8105, USA
| | - Kayleigh Hackett
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06520-8105, USA
| | - Tina Wu
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06520-8105, USA
| | - Justin Nguyễn
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06520-8105, USA
| | - Jiangnan Shen
- Department of Biostatistics, Yale School of Public Health, New Haven, CT, 06510, USA
| | - Hongyu Zhao
- Department of Biostatistics, Yale School of Public Health, New Haven, CT, 06510, USA
- Department of Genetics, Yale University School of Medicine, New Haven, CT, 06510, USA
| | | | - Peter Armbruster
- Department of Biology, Georgetown University, Washington, DC, USA
| | - Adalgisa Caccone
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06520-8105, USA
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4
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Mancini MV, Murdochy SM, Bilgo E, Ant TH, Gingell D, Gnambani EJ, Failloux AB, Diabate A, Sinkins SP. Wolbachia strain wAlbB shows favourable characteristics for dengue control use in Aedes aegypti from Burkina Faso. Environ Microbiol 2024; 26:e16588. [PMID: 38450576 DOI: 10.1111/1462-2920.16588] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Accepted: 01/23/2024] [Indexed: 03/08/2024]
Abstract
Dengue represents an increasing public health burden worldwide. In Africa, underreporting and misdiagnosis often mask its true epidemiology, and dengue is likely to be both more widespread than reported data suggest and increasing in incidence and distribution. Wolbachia-based dengue control is underway in Asia and the Americas but has not to date been deployed in Africa. Due to the genetic heterogeneity of African Aedes aegypti populations and the complexity of the host-symbiont interactions, characterization of key parameters of Wolbachia-carrying mosquitoes is paramount for determining the potential of the system as a control tool for dengue in Africa. The wAlbB Wolbachia strain was stably introduced into an African Ae. aegypti population by introgression, and showed high intracellular density in whole bodies and different mosquito tissues; high intracellular density was also maintained following larval rearing at high temperatures. No effect on the adult lifespan induced by Wolbachia presence was detected. Moreover, the ability of this strain to strongly inhibit DENV-2 dissemination and transmission in the host was also demonstrated in the African background. Our findings suggest the potential of harnessing Wolbachia for dengue control for African populations of Ae. aegypti.
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Affiliation(s)
- Maria Vittoria Mancini
- MRC-University of Glasgow Centre for Virus Research, Glasgow, UK
- Department of Biology and Biotechnology, University of Pavia, Pavia, Italy
| | | | - Etienne Bilgo
- Institut de Recherche en Sciences de la Santé, Direction Régionale de l'Ouest, Dioulasso, Burkina Faso
- Institut National de Santé Publique/Centre Muraz, Dioulasso, Burkina Faso
| | - Thomas H Ant
- MRC-University of Glasgow Centre for Virus Research, Glasgow, UK
| | - Daniel Gingell
- MRC-University of Glasgow Centre for Virus Research, Glasgow, UK
| | - Edounou Jacques Gnambani
- Institut de Recherche en Sciences de la Santé, Direction Régionale de l'Ouest, Dioulasso, Burkina Faso
- Institut National de Santé Publique/Centre Muraz, Dioulasso, Burkina Faso
| | - Anna-Bella Failloux
- Institut Pasteur, Université Paris Cité, Arboviruses and Insect Vectors Unit, Paris, France
| | - Abdoulaye Diabate
- Institut de Recherche en Sciences de la Santé, Direction Régionale de l'Ouest, Dioulasso, Burkina Faso
- Institut National de Santé Publique/Centre Muraz, Dioulasso, Burkina Faso
| | - Steven P Sinkins
- MRC-University of Glasgow Centre for Virus Research, Glasgow, UK
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5
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Dabo S, Henrion-Lacritick A, Lecuyer A, Jiolle D, Paupy C, Ayala D, da Veiga Leal S, Badolo A, Vega-Rúa A, Sylla M, Akorli J, Otoo S, Lutomiah J, Sang R, Mutebi JP, Saleh MC, Rose NH, McBride CS, Lambrechts L. Extensive variation and strain-specificity in dengue virus susceptibility among African Aedes aegypti populations. PLoS Negl Trop Dis 2024; 18:e0011862. [PMID: 38527081 PMCID: PMC10994562 DOI: 10.1371/journal.pntd.0011862] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2023] [Revised: 04/04/2024] [Accepted: 03/15/2024] [Indexed: 03/27/2024] Open
Abstract
African populations of the mosquito Aedes aegypti are usually considered less susceptible to infection by human-pathogenic flaviviruses than globally invasive populations found outside Africa. Although this contrast has been well documented for Zika virus (ZIKV), it is unclear to what extent it is true for dengue virus (DENV), the most prevalent flavivirus of humans. Addressing this question is complicated by substantial genetic diversity among DENV strains, most notably in the form of four genetic types (DENV1 to DENV4), that can lead to genetically specific interactions with mosquito populations. Here, we carried out a survey of DENV susceptibility using a panel of seven field-derived Ae. aegypti colonies from across the African range of the species and a colony from Guadeloupe, French West Indies as non-African reference. We found considerable variation in the ability of African Ae. aegypti populations to acquire and replicate a panel of six DENV strains spanning the four DENV types. Although African Ae. aegypti populations were generally less susceptible than the reference non-African population from Guadeloupe, in several instances some African populations were equally or more susceptible than the Guadeloupe population. Moreover, the relative level of susceptibility between African mosquito populations depended on the DENV strain, indicating genetically specific interactions. We conclude that unlike ZIKV susceptibility, there is no clear-cut dichotomy in DENV susceptibility between African and non-African Ae. aegypti. DENV susceptibility of African Ae. aegypti populations is highly heterogeneous and largely governed by the specific pairing of mosquito population and DENV strain.
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Affiliation(s)
- Stéphanie Dabo
- Institut Pasteur, Université Paris Cité, CNRS UMR2000, Insect-Virus Interactions Unit, Paris, France
| | | | - Alicia Lecuyer
- Institut Pasteur, Université Paris Cité, CNRS UMR2000, Insect-Virus Interactions Unit, Paris, France
| | - Davy Jiolle
- MIVEGEC, Montpellier University, IRD, CNRS, Montpellier, France
- Centre Interdisciplinaire de Recherches Médicales de Franceville, Franceville, Gabon
| | - Christophe Paupy
- MIVEGEC, Montpellier University, IRD, CNRS, Montpellier, France
- Centre Interdisciplinaire de Recherches Médicales de Franceville, Franceville, Gabon
| | - Diego Ayala
- MIVEGEC, Montpellier University, IRD, CNRS, Montpellier, France
- Centre Interdisciplinaire de Recherches Médicales de Franceville, Franceville, Gabon
| | - Silvânia da Veiga Leal
- Laboratório de Entomologia Médica, Instituto Nacional de Saúde Pública, Praia, Cabo Verde
| | - Athanase Badolo
- Laboratoire d’Entomologie Fondamentale et Appliquée, Université Joseph Ki-Zerbo, Ouagadougou, Burkina Faso
| | - Anubis Vega-Rúa
- Institut Pasteur of Guadeloupe, Laboratory of Vector Control Research, Transmission Reservoir and Pathogens Diversity Unit, Morne Jolivière, Guadeloupe, France
| | - Massamba Sylla
- Department of Livestock Sciences and Techniques, University Sine Saloum El Hadji Ibrahima NIASS, Kaffrine, Senegal
| | - Jewelna Akorli
- Department of Parasitology, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana
| | - Sampson Otoo
- Department of Parasitology, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana
| | - Joel Lutomiah
- Arbovirus/Viral Hemorrhagic Fevers Laboratory, Center for Virus Research, Kenya Medical Research Institute, Nairobi, Kenya
| | - Rosemary Sang
- Arbovirus/Viral Hemorrhagic Fevers Laboratory, Center for Virus Research, Kenya Medical Research Institute, Nairobi, Kenya
| | - John-Paul Mutebi
- Department of Solid Waste Management, Mosquito Control Division, Miami, Florida, United States of America
| | - Maria-Carla Saleh
- Institut Pasteur, Université Paris Cité, CNRS UMR3569, Viruses and RNA Interference Unit, Paris, France
| | - Noah H. Rose
- Department of Ecology & Evolutionary Biology, Princeton University, Princeton, New Jersey, United States of America
- Princeton Neuroscience Institute, Princeton University, Princeton, New Jersey, United States of America
| | - Carolyn S. McBride
- Department of Ecology & Evolutionary Biology, Princeton University, Princeton, New Jersey, United States of America
- Princeton Neuroscience Institute, Princeton University, Princeton, New Jersey, United States of America
| | - Louis Lambrechts
- Institut Pasteur, Université Paris Cité, CNRS UMR2000, Insect-Virus Interactions Unit, Paris, France
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6
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Dabo S, Henrion-Lacritick A, Lecuyer A, Jiolle D, Paupy C, Ayala D, da Veiga Leal S, Badolo A, Vega-Rúa A, Sylla M, Akorli J, Otoo S, Lutomiah J, Sang R, Mutebi JP, Saleh MC, Rose NH, McBride CS, Lambrechts L. Extensive variation and strain-specificity in dengue virus susceptibility among African Aedes aegypti populations. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.12.14.571617. [PMID: 38168387 PMCID: PMC10760182 DOI: 10.1101/2023.12.14.571617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2024]
Abstract
African populations of the mosquito Aedes aegypti are usually considered less susceptible to infection by human-pathogenic flaviviruses than globally invasive populations found outside Africa. Although this contrast has been well documented for Zika virus (ZIKV), it is unclear to what extent it is true for dengue virus (DENV), the most prevalent flavivirus of humans. Addressing this question is complicated by substantial genetic diversity among DENV strains, most notably in the form of four genetic types (DENV1 to DENV4), that can lead to genetically specific interactions with mosquito populations. Here, we carried out a continent-wide survey of DENV susceptibility using a panel of field-derived Ae. aegypti colonies from across the African range of the species and a colony from Guadeloupe, French West Indies as non-African reference. We found considerable variation in the ability of African Ae. aegypti populations to acquire and replicate a panel of six DENV strains spanning the four DENV types. Although African Ae. aegypti populations were generally less susceptible than the reference non-African population from Guadeloupe, in several instances some African populations were equally or more susceptible than the Guadeloupe population. Moreover, the relative level of susceptibility between African mosquito populations depended on the DENV strain, indicating genetically specific interactions. We conclude that unlike ZIKV susceptibility, there is no clear-cut dichotomy in DENV susceptibility between African and non-African Ae. aegypti. DENV susceptibility of African Ae. aegypti populations is highly heterogeneous and largely governed by the specific pairing of mosquito population and DENV strain.
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Affiliation(s)
- Stéphanie Dabo
- Institut Pasteur, Université Paris Cité, CNRS UMR2000, Insect-Virus Interactions Unit, Paris, France
| | | | - Alicia Lecuyer
- Institut Pasteur, Université Paris Cité, CNRS UMR2000, Insect-Virus Interactions Unit, Paris, France
| | - Davy Jiolle
- MIVEGEC, Montpellier University, IRD, CNRS, Montpellier, France
- Centre Interdisciplinaire de Recherches Médicales de Franceville, Franceville, Gabon
| | - Christophe Paupy
- MIVEGEC, Montpellier University, IRD, CNRS, Montpellier, France
- Centre Interdisciplinaire de Recherches Médicales de Franceville, Franceville, Gabon
| | - Diego Ayala
- MIVEGEC, Montpellier University, IRD, CNRS, Montpellier, France
- Centre Interdisciplinaire de Recherches Médicales de Franceville, Franceville, Gabon
| | - Silvânia da Veiga Leal
- Laboratório de Entomologia Médica, Instituto Nacional de Saúde Pública, Praia, Cabo Verde
| | - Athanase Badolo
- Laboratoire d’Entomologie Fondamentale et Appliquée, Université Joseph Ki-Zerbo, Ouagadougou, Burkina Faso
| | - Anubis Vega-Rúa
- Institut Pasteur of Guadeloupe, Laboratory of Vector Control Research, Transmission Reservoir and Pathogens Diversity Unit, Morne Jolivière, Guadeloupe, France
| | - Massamba Sylla
- Department of Livestock Sciences and Techniques, University Sine Saloum El Hadji Ibrahima NIASS, Kaffrine, Senegal
| | - Jewelna Akorli
- Department of Parasitology, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana
| | - Sampson Otoo
- Department of Parasitology, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana
| | - Joel Lutomiah
- Arbovirus/Viral Hemorrhagic Fevers Laboratory, Center for Virus Research, Kenya Medical Research Institute, Nairobi, Kenya
| | - Rosemary Sang
- Arbovirus/Viral Hemorrhagic Fevers Laboratory, Center for Virus Research, Kenya Medical Research Institute, Nairobi, Kenya
| | - John-Paul Mutebi
- Centers for Disease Control and Prevention, Fort Collins, Colorado, United States of America
| | - Maria-Carla Saleh
- Institut Pasteur, Université Paris Cité, CNRS UMR3569, Viruses and RNA Interference Unit, Paris, France
| | - Noah H. Rose
- Department of Ecology & Evolutionary Biology, Princeton University, Princeton, New Jersey, United States of America
- Princeton Neuroscience Institute, Princeton University, Princeton, New Jersey, United States of America
- Current address: Department of Ecology, Behavior, and Evolution, University of California San Diego, La Jolla, California, United States of America
| | - Carolyn S. McBride
- Department of Ecology & Evolutionary Biology, Princeton University, Princeton, New Jersey, United States of America
- Princeton Neuroscience Institute, Princeton University, Princeton, New Jersey, United States of America
| | - Louis Lambrechts
- Institut Pasteur, Université Paris Cité, CNRS UMR2000, Insect-Virus Interactions Unit, Paris, France
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7
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Love RR, Sikder JR, Vivero RJ, Matute DR, Schrider DR. Strong Positive Selection in Aedes aegypti and the Rapid Evolution of Insecticide Resistance. Mol Biol Evol 2023; 40:msad072. [PMID: 36971242 PMCID: PMC10118305 DOI: 10.1093/molbev/msad072] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Revised: 02/13/2023] [Accepted: 03/23/2023] [Indexed: 03/29/2023] Open
Abstract
Aedes aegypti vectors the pathogens that cause dengue, yellow fever, Zika virus, and chikungunya and is a serious threat to public health in tropical regions. Decades of work has illuminated many aspects of Ae. aegypti's biology and global population structure and has identified insecticide resistance genes; however, the size and repetitive nature of the Ae. aegypti genome have limited our ability to detect positive selection in this mosquito. Combining new whole genome sequences from Colombia with publicly available data from Africa and the Americas, we identify multiple strong candidate selective sweeps in Ae. aegypti, many of which overlap genes linked to or implicated in insecticide resistance. We examine the voltage-gated sodium channel gene in three American cohorts and find evidence for successive selective sweeps in Colombia. The most recent sweep encompasses an intermediate-frequency haplotype containing four candidate insecticide resistance mutations that are in near-perfect linkage disequilibrium with one another in the Colombian sample. We hypothesize that this haplotype may continue to rapidly increase in frequency and perhaps spread geographically in the coming years. These results extend our knowledge of how insecticide resistance has evolved in this species and add to a growing body of evidence suggesting that Ae. aegypti has an extensive genomic capacity to rapidly adapt to insecticide-based vector control.
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Affiliation(s)
- R Rebecca Love
- Department of Genetics, School of Medicine, University of North Carolina, Chapel Hill, NCUSA
| | - Josh R Sikder
- Department of Genetics, School of Medicine, University of North Carolina, Chapel Hill, NCUSA
| | - Rafael J Vivero
- Programa de Estudio y Control de Enfermedades Tropicales, PECET, Universidad de Antioquia, Chapel Hill, NCColombia
| | - Daniel R Matute
- Department of Biology, College of Arts and Sciences, University of North Carolina, Chapel Hill, NC, USA
| | - Daniel R Schrider
- Department of Genetics, School of Medicine, University of North Carolina, Chapel Hill, NCUSA
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8
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Urban population structure and dispersal of an Australian mosquito (Aedes notoscriptus) involved in disease transmission. Heredity (Edinb) 2023; 130:99-108. [PMID: 36539450 PMCID: PMC9905534 DOI: 10.1038/s41437-022-00584-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Revised: 11/29/2022] [Accepted: 12/01/2022] [Indexed: 12/24/2022] Open
Abstract
Dispersal is a critical parameter for successful pest control measures as it determines the rate of movement across target control areas and influences the risk of human exposure. We used a fine-scale spatial population genomic approach to investigate the dispersal ecology and population structure of Aedes notoscriptus, an important disease transmitting mosquito at the Mornington Peninsula, Australia. We sampled and reared Ae. notoscriptus eggs at two time points from 170 traps up to 5 km apart and generated genomic data from 240 individuals. We also produced a draft genome assembly from a laboratory colony established from mosquitoes sampled near the study area. We found low genetic structure (Fst) and high coancestry throughout the study region. Using genetic data to identify close kin dyads, we found that mosquitoes had moved distances of >1 km within a generation, which is further than previously recorded. A spatial autocorrelation analysis of genetic distances indicated genetic similarity at >1 km separation, a tenfold higher distance than for a comparable population of Ae. aegypti, from Cairns, Australia. These findings point to high mobility of Ae. notoscriptus, highlighting challenges of localised intervention strategies. Further sampling within the same area 6 and 12 months after initial sampling showed that egg-counts were relatively consistent across time, and that spatial variation in egg-counts covaried with spatial variation in Wright's neighbourhood size (NS). As NS increases linearly with population density, egg-counts may be useful for estimating relative density in Ae. notoscriptus. The results highlight the importance of acquiring species-specific data when planning control measures.
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9
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Agha SB, Tchouassi DP. Urbanization of Aedes mosquito populations and evolution of arboviral disease risk in Africa. CURRENT OPINION IN INSECT SCIENCE 2022; 54:100988. [PMID: 36332839 DOI: 10.1016/j.cois.2022.100988] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2022] [Revised: 10/20/2022] [Accepted: 10/24/2022] [Indexed: 06/16/2023]
Abstract
The arboviral diseases dengue, chikungunya, and yellow fever are re-merging and gaining a foothold in Africa, with a significant threat of large outbreaks in urban areas. Although their emergence is intimately linked to the primary vector Aedes aegypti, which thrives in urban environments, the risk of these diseases remains substantially heterogeneous in different geographic areas. Range expansion of invasive mosquito species Aedes albopictus, and colonization of urban habitats by sylvatic and peridomestic Aedes vectors, are likely to alter the diseases' epidemiology. We discuss how a network of different vector species and perhaps vector subpopulations could interact with associated serotypes/genotypes/lineages of the causative viruses of these diseases potentially impacting transmission risk in urban landscapes with implications for disease surveillance and control.
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Affiliation(s)
- Sheila B Agha
- International Centre of Insect Physiology and Ecology, P.O. Box 30772-00100, Nairobi, Kenya.
| | - David P Tchouassi
- International Centre of Insect Physiology and Ecology, P.O. Box 30772-00100, Nairobi, Kenya
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10
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Brouazin R, Claudel I, Lancelot R, Dupuy G, Gouagna LC, Dupraz M, Baldet T, Bouyer J. Optimization of oviposition trap settings to monitor populations of Aedes mosquitoes, vectors of arboviruses in La Reunion. Sci Rep 2022; 12:18450. [PMID: 36323764 PMCID: PMC9630495 DOI: 10.1038/s41598-022-23137-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2022] [Accepted: 10/25/2022] [Indexed: 11/05/2022] Open
Abstract
Several dengue epidemics recently occurred in La Reunion, an island harboring two dengue viruses (DVs) vectors: Aedes albopictus, and Ae. aegypti, the former being the main local DV vector. Aedes aegypti shows a peculiar ecology, compared to other tropical populations of the same species. This study aimed to provide researchers and public-health users with locally validated oviposition traps (ovitraps) to monitor Aedes populations. A field experiment was performed in Saint-Joseph to assess the effect of different settings on the detection probability and apparent density of Aedes mosquitoes. Black plastic ovitraps were identified as the best choice. Vacoa trees (Pandanus utilis) were the only observed breeding sites for Ae. aegypti, shared with Ae. albopictus. They were the experimental units in a Latin square design with three factors: trap position in the trees (ground vs canopy), oviposition surface in the trap (blotting paper vs. vacoa leaf), and addition of organic matter to the trap water. The latter factor was found unimportant. On the ground, Ae. aegypti eggs were only found with vacoa leaves as the oviposition surface. Their detection and apparent density increased when ovitraps were located in the tree canopy. The main factor for Ae. albopictus was the oviposition surface, with a preference for blotting paper. In all trap settings, their detection was close to 100%. Larval survival was lower for a high egg density, combined with blotting paper as the oviposition surface. When monitoring mixed Aedes populations in La Reunion, we recommend using black plastic ovitraps, placed at 1.50-to-2.00-m high in vacoa trees, with vacoa leaves as the oviposition surface.
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Affiliation(s)
- Ronan Brouazin
- grid.121334.60000 0001 2097 0141UMR Mivegec (Maladies Infectieuses et Vecteurs: Écologie, Génétique, Évolution et Contrôle), IRD-CNRS-Univ. Montpellier, 97410 Saint-Pierre, La Réunion France
| | - Iris Claudel
- grid.121334.60000 0001 2097 0141UMR Mivegec (Maladies Infectieuses et Vecteurs: Écologie, Génétique, Évolution et Contrôle), IRD-CNRS-Univ. Montpellier, 97410 Saint-Pierre, La Réunion France
| | - Renaud Lancelot
- grid.121334.60000 0001 2097 0141UMR Astre (Animals, Health, Territories, Risks, Ecosystems), Cirad, Inrae, Univ. Montpellier, 34398 Montpellier, France ,grid.8183.20000 0001 2153 9871Cirad, UMR Astre, 97491 Sainte Clotilde, La Réunion France
| | - Guillaume Dupuy
- ARS Réunion, Service de Lutte Anti-Vectorielle, Saint-Denis, La Réunion France
| | | | - Marlène Dupraz
- grid.121334.60000 0001 2097 0141UMR Astre (Animals, Health, Territories, Risks, Ecosystems), Cirad, Inrae, Univ. Montpellier, 34398 Montpellier, France ,grid.8183.20000 0001 2153 9871Cirad, UMR Astre, 97491 Sainte Clotilde, La Réunion France
| | - Thierry Baldet
- grid.121334.60000 0001 2097 0141UMR Astre (Animals, Health, Territories, Risks, Ecosystems), Cirad, Inrae, Univ. Montpellier, 34398 Montpellier, France ,grid.8183.20000 0001 2153 9871Cirad, UMR Astre, 97491 Sainte Clotilde, La Réunion France
| | - Jérémy Bouyer
- grid.121334.60000 0001 2097 0141UMR Astre (Animals, Health, Territories, Risks, Ecosystems), Cirad, Inrae, Univ. Montpellier, 34398 Montpellier, France ,grid.420221.70000 0004 0403 8399Insect Pest Control Laboratory, Joint FAO/IAEA Programme of Nuclear Techniques in Food and Agriculture, IAEA Vienna, Wagramer Strasse 5, 1400 Vienna, Austria
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11
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Rose NH, Dabo S, da Veiga Leal S, Sylla M, Diagne CT, Faye O, Faye O, Sall AA, McBride CS, Lambrechts L. Enhanced mosquito vectorial capacity underlies the Cape Verde Zika epidemic. PLoS Biol 2022; 20:e3001864. [PMID: 36288328 PMCID: PMC9604947 DOI: 10.1371/journal.pbio.3001864] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Accepted: 10/03/2022] [Indexed: 11/07/2022] Open
Abstract
The explosive emergence of Zika virus (ZIKV) across the Pacific and Americas since 2007 was associated with hundreds of thousands of human cases and severe outcomes, including congenital microcephaly caused by ZIKV infection during pregnancy. Although ZIKV was first isolated in Uganda, Africa has so far been exempt from large-scale ZIKV epidemics, despite widespread susceptibility among African human populations. A possible explanation for this pattern is natural variation among populations of the primary vector of ZIKV, the mosquito Aedes aegypti. Globally invasive populations of Ae. aegypti outside of Africa are considered effective ZIKV vectors because they are human specialists with high intrinsic ZIKV susceptibility, whereas African populations of Ae. aegypti across the species' native range are predominantly generalists with low intrinsic ZIKV susceptibility, making them less likely to spread viruses in the human population. We test this idea by studying a notable exception to the patterns observed across most of Africa: Cape Verde experienced a large ZIKV outbreak in 2015 to 2016. We find that local Ae. aegypti in Cape Verde have substantial human-specialist ancestry, show a robust behavioral preference for human hosts, and exhibit increased susceptibility to ZIKV infection, consistent with a key role for variation among mosquito populations in ZIKV epidemiology. These findings suggest that similar human-specialist populations of Ae. aegypti in the nearby Sahel region of West Africa, which may be expanding in response to rapid urbanization, could serve as effective vectors for ZIKV in the future.
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Affiliation(s)
- Noah H. Rose
- Department of Ecology & Evolutionary Biology, Princeton University, Princeton, New Jersey, United States of America
- Princeton Neuroscience Institute, Princeton University, Princeton, New Jersey, United States of America
| | - Stéphanie Dabo
- Institut Pasteur, Université Paris Cité, CNRS UMR2000, Insect-Virus Interactions Unit, Paris, France
| | - Silvânia da Veiga Leal
- Laboratório de Entomologia Médica, Instituto Nacional de Saúde Pública, Praia, Cabo Verde
| | - Massamba Sylla
- Department of Livestock Sciences and Techniques, University Sine Saloum El Hadji Ibrahima NIASS, Kaffrine, Senegal
| | - Cheikh T. Diagne
- Institut Pasteur Dakar, Arbovirus and Viral Hemorrhagic Fevers Unit, Dakar, Senegal
| | - Oumar Faye
- Institut Pasteur Dakar, Arbovirus and Viral Hemorrhagic Fevers Unit, Dakar, Senegal
| | - Ousmane Faye
- Institut Pasteur Dakar, Arbovirus and Viral Hemorrhagic Fevers Unit, Dakar, Senegal
| | - Amadou A. Sall
- Institut Pasteur Dakar, Arbovirus and Viral Hemorrhagic Fevers Unit, Dakar, Senegal
| | - Carolyn S. McBride
- Department of Ecology & Evolutionary Biology, Princeton University, Princeton, New Jersey, United States of America
- Princeton Neuroscience Institute, Princeton University, Princeton, New Jersey, United States of America
| | - Louis Lambrechts
- Institut Pasteur, Université Paris Cité, CNRS UMR2000, Insect-Virus Interactions Unit, Paris, France
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12
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Gloria-Soria A, Faraji A, Hamik J, White G, Amsberry S, Donahue M, Buss B, Pless E, Cosme LV, Powell JR. Origins of high latitude introductions of Aedes aegypti to Nebraska and Utah during 2019. INFECTION, GENETICS AND EVOLUTION : JOURNAL OF MOLECULAR EPIDEMIOLOGY AND EVOLUTIONARY GENETICS IN INFECTIOUS DISEASES 2022; 103:105333. [PMID: 35817397 DOI: 10.1016/j.meegid.2022.105333] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Revised: 06/27/2022] [Accepted: 07/05/2022] [Indexed: 06/15/2023]
Abstract
Aedes aegypti (L.), the yellow fever mosquito, is also an important vector of dengue and Zika viruses, and an invasive species in North America. Aedes aegypti inhabits tropical and sub-tropical areas of the world and in North America is primarily distributed throughout the southern US states and Mexico. The northern range of Ae. aegypti is limited by cold winter months and establishment in these areas has been mostly unsuccessful. However, frequent introductions of Ae. aegypti to temperate, non-endemic areas during the warmer months can lead to seasonal activity and disease outbreaks. Two Ae. aegypti incursions were reported in the late summer of 2019 into York, Nebraska and Moab, Utah. These states had no history of established populations of this mosquito and no evidence of previous seasonal activity. We genotyped a subset of individuals from each location at 12 microsatellite loci and ~ 14,000 single nucleotide polymorphic markers to determine their genetic affinities to other populations worldwide and investigate their potential source of introduction. Our results support a single origin for each of the introductions from different sources. Aedes aegypti from Utah likely derived from Tucson, Arizona, or a nearby location. Nebraska specimen results were not as conclusive, but point to an origin from southcentral or southeastern US. In addition to an effective, efficient, and sustainable control of invasive mosquitoes, such as Ae. aegypti, identifying the potential routes of introduction will be key to prevent future incursions and assess their potential health threat based on the ability of the source population to transmit a particular virus and its insecticide resistance profile, which may complicate vector control.
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Affiliation(s)
- Andrea Gloria-Soria
- Department of Entomology, Center for Vector Biology & Zoonotic Diseases, The Connecticut Agricultural Experiment Station, 123 Huntington Street, P.O. Box 1106, New Haven, CT 06511, USA; Yale University, Department of Ecology and Evolutionary Biology, 21 Sachem Street, New Haven, CT 06511, USA.
| | - Ary Faraji
- Salt Lake City Mosquito Abatement District, 2215 North 2200 West, Salt Lake City, UT 84116-1108, USA.
| | - Jeff Hamik
- Nebraska Department of Health and Human Services, Epidemiology and Informatics Unit, 301 Centennial Mall South, Lincoln, NE 68509, USA; University of Nebraska-Lincoln, Department of Educational Psychology, 114 Teachers College Hall, Lincoln, NE 68588, USA.
| | - Gregory White
- Salt Lake City Mosquito Abatement District, 2215 North 2200 West, Salt Lake City, UT 84116-1108, USA.
| | - Shanon Amsberry
- Moab Mosquito Abatement District, 1000 Sand Flats Rd, Moab, UT 84532, USA.
| | - Matthew Donahue
- Nebraska Department of Health and Human Services, Epidemiology and Informatics Unit, 301 Centennial Mall South, Lincoln, NE 68509, USA; Epidemic Intelligence Service, CDC, USA.
| | - Bryan Buss
- Nebraska Department of Health and Human Services, Epidemiology and Informatics Unit, 301 Centennial Mall South, Lincoln, NE 68509, USA; Career Epidemiology Field Officer Program, Division of State and Local Readiness, Center for Preparedness and Response, CDC, USA.
| | | | - Luciano Veiga Cosme
- Yale University, Department of Ecology and Evolutionary Biology, 21 Sachem Street, New Haven, CT 06511, USA.
| | - Jeffrey R Powell
- Yale University, Department of Ecology and Evolutionary Biology, 21 Sachem Street, New Haven, CT 06511, USA.
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13
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Pichler V, Caputo B, Valadas V, Micocci M, Horvath C, Virgillito C, Akiner M, Balatsos G, Bender C, Besnard G, Bravo-Barriga D, Bueno-Mari R, Collantes F, Delacour-Estrella S, Dikolli E, Falcuta E, Flacio E, García-Pérez AL, Kalan K, Kavran M, L'Ambert G, Lia RP, Marabuto E, Medialdea R, Melero-Alcibar R, Michaelakis A, Mihalca A, Mikov O, Miranda MA, Müller P, Otranto D, Pajovic I, Petric D, Rebelo MT, Robert V, Rogozi E, Tello A, Zitko T, Schaffner F, Pinto J, Della Torre A. Geographic distribution of the V1016G knockdown resistance mutation in Aedes albopictus: a warning bell for Europe. Parasit Vectors 2022; 15:280. [PMID: 35932088 PMCID: PMC9356396 DOI: 10.1186/s13071-022-05407-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Accepted: 07/14/2022] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Colonization of large part of Europe by the Asian tiger mosquito Aedes albopictus is causing autochthonous transmission of chikungunya and dengue exotic arboviruses. While pyrethroids are recommended only to reduce/limit transmission, they are widely implemented to reduce biting nuisance and to control agricultural pests, increasing the risk of insurgence of resistance mechanisms. Worryingly, pyrethroid resistance (with mortality < 70%) was recently reported in Ae. albopictus populations from Italy and Spain and associated with the V1016G point mutation in the voltage-sensitive sodium channel gene conferring knockdown resistance (kdr). Genotyping pyrethroid resistance-associated kdr mutations in field mosquito samples represents a powerful approach to detect early signs of resistance without the need for carrying out phenotypic bioassays which require availability of live mosquitoes, dedicated facilities and appropriate expertise. METHODS Here we report results on the PCR-genotyping of the V1016G mutation in 2530 Ae. albopictus specimens from 69 sampling sites in 19 European countries. RESULTS The mutation was identified in 12 sites from nine countries (with allele frequencies ranging from 1 to 8%), mostly distributed in two geographical clusters. The western cluster includes Mediterranean coastal sites from Italy, France and Malta as well as single sites from both Spain and Switzerland. The eastern cluster includes sites on both sides of the Black Sea in Bulgaria, Turkey and Georgia as well as one site from Romania. These results are consistent with genomic data showing high connectivity and close genetic relationship among West European populations and a major barrier to gene flow between West European and Balkan populations. CONCLUSIONS The results of this first effort to map kdr mutations in Ae. albopictus on a continental scale show a widespread presence of the V1016G allele in Europe, although at lower frequencies than those previously reported from Italy. This represents a wake-up call for mosquito surveillance programs in Europe to include PCR-genotyping of pyrethroid resistance alleles, as well as phenotypic resistance assessments, in their routine activities.
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Affiliation(s)
- Verena Pichler
- Dipartimento di Sanità Pubblica & Malattie Infettive, Università di Roma Sapienza, Rome, Italy
| | - Beniamino Caputo
- Dipartimento di Sanità Pubblica & Malattie Infettive, Università di Roma Sapienza, Rome, Italy
| | - Vera Valadas
- Global Health and Tropical Medicine, Instituto De Higiene E Medicina Tropical, Universidade Nova De Lisboa, Lisbon, Portugal
| | - Martina Micocci
- Dipartimento di Sanità Pubblica & Malattie Infettive, Università di Roma Sapienza, Rome, Italy
| | - Cintia Horvath
- University of Agricultural Sciences and Veterinary Medicine, Cluj-Napoca, Romania
| | - Chiara Virgillito
- Dipartimento di Sanità Pubblica & Malattie Infettive, Università di Roma Sapienza, Rome, Italy
| | | | - Georgios Balatsos
- Laboratory of Insects & Parasites of Medical Importance, Benaki Phytopathological Institute, Kifisia, Greece
| | - Christelle Bender
- Syndicat de Lutte Contre Les Moustiques du Bas-Rhin, Strasbourg, France
| | - Gilles Besnard
- Entente Interdépartementale Rhône-Alpes pour la Démoustication, Chindrieux, France
| | - Daniel Bravo-Barriga
- Animal Health Department, Veterinary Faculty, University of Extremadura (UEx), Cáceres, Spain
| | | | | | | | | | - Elena Falcuta
- Cantacuzino, National Military-Medical Institute of Research and Development, Bucharest, Romania
| | - Eleonora Flacio
- University of Applied Sciences of Southern Switzerland, Manno, Switzerland
| | - Ana L García-Pérez
- Neiker-Basque Institute for Agricultural Research and Development, Derio, Spain
| | | | | | - Gregory L'Ambert
- Entente Interdépartementale Rhône-Alpes pour la Démoustication, Chindrieux, France
| | | | - Eduardo Marabuto
- Museum of Zoology, Senckenberg Natural History Collections Dresden, Dresden, Germany
| | | | | | - Antonios Michaelakis
- Laboratory of Insects & Parasites of Medical Importance, Benaki Phytopathological Institute, Kifisia, Greece
| | - Andrei Mihalca
- University of Agricultural Sciences and Veterinary Medicine, Cluj-Napoca, Romania
| | - Ognyan Mikov
- National Centre of Infectious and Parasitic Diseases, Sofia, Bulgaria
| | - Miguel A Miranda
- Applied Zoology and Animal Conservation, University of the Balearic Islands, Palma, Spain
| | - Pie Müller
- Swiss Tropical and Public Health Institute, Allschwil, Switzerland.,University of Basel, Basel, Switzerland
| | | | | | | | - Maria Teresa Rebelo
- CESAM-Ciências, Faculdade de Ciências da Universidade de Lisboa, , Lisbon, Portugal
| | - Vincent Robert
- Mivegec Laboratory, Institut de Recherche pour le Développement, Centre National de la Recherche Scientifique, University of Montpellier, Montpellier, France
| | | | - Ana Tello
- Facultad de Ciencias Biológicas, Universidad Complutense de Madrid, Madrid, Spain
| | - Toni Zitko
- Institute of Public Health of Split-Dalmatia County, Split, Croatia
| | | | - Joao Pinto
- Global Health and Tropical Medicine, Instituto De Higiene E Medicina Tropical, Universidade Nova De Lisboa, Lisbon, Portugal
| | - Alessandra Della Torre
- Dipartimento di Sanità Pubblica & Malattie Infettive, Università di Roma Sapienza, Rome, Italy.
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14
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City puzzles: Does urban land scape affect genetic population structure in Aedes aegypti? PLoS Negl Trop Dis 2022; 16:e0010549. [PMID: 35793338 PMCID: PMC9292108 DOI: 10.1371/journal.pntd.0010549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2021] [Revised: 07/18/2022] [Accepted: 06/01/2022] [Indexed: 11/19/2022] Open
Abstract
Cities usually offer a suitable environment for the dengue vector Aedes aegypti, providing oviposition sites, accessibility to human hosts and nectar meals. However, large urban centres are highly heterogeneous environments, forming a patched landscape that could affect Ae. aegypti population dynamics and dispersal. Here, we performed a genome-wide analysis using Rad-seq data from 99 Ae. aegypti specimens collected in three areas within Buenos Aires city with varying levels of urbanization/land use: highly urbanized Area 1, intermediate Area 2 and poorly urbanized Area 3. We found an inverse association between urbanization levels and spatial genetic structure. Populations from highly urbanized Area 1 did not present genetic structure whereas two and three clusters were detected in Areas 2 and 3, respectively. In the case of Area 3, initial analyses showed separation in clusters was mostly due to elevated consanguinity within sites although three clusters were still detected after closely related individuals were discarded. Mosquitoes around each site displayed a high degree of isolation, evidencing a close dependence between the vector and human dwellings. Interestingly, specimens from distant boroughs (within the limits of the city) and the city’s outskirts formed a single cluster with inner city sites (Area 1), highlighting the role of passive transport in shaping population structure. Genetic distances were poorly correlated with geographic distances in Buenos Aires, suggesting a stronger influence of passive than active dispersal on population structure. Only Area 2 displayed a significant isolation-by-distance pattern (p = 0.046), with males dispersing more than females (p = 0.004 and p = 0.016, respectively). Kinship analyses allowed us to detect full-siblings located 1.5 km apart in Area 1, which could be due to an extreme event of active female dispersal. Effective population size was higher in Area 2 confirming that cemeteries represent highly favourable environments for Ae. aegypti and need to be specifically targeted. Our results suggest that control programs should take into account urban landscape heterogeneity in order to improve vector control. Arboviral vector Aedes aegypti usually thrives in urban areas due to its close dependence of human dwellings on breeding sites and meals. However, urban landscapes are heterogeneous and present varying levels of urbanization and land use, affecting Ae. aegypti spatial structure and dispersal. We used nuclear Single Nucleotide Polymorphisms to analyze 99 Ae. aegypti specimens from three areas within the city of Buenos Aires: highly urbanized Area 1, intermediate urbanized Area 2 and poorly urbanized Area 3. We found an inverse association between urbanization levels and spatial genetic structure: mosquitoes from Area 1 did not present genetic structure. On the other hand, mosquitoes from Area 2 and 3 displayed 2 and 3 clusters, respectively. Human-mediated transport plays an important role in highly urbanized areas, connecting mosquito populations from distant locations. Potential active dispersal was detected in Area 1 where we found pairs of full-siblings located 1500m apart. In less urbanized areas, the distribution of breeding sites also affected spatial genetic structure. In Area 3, spatial structure was mostly due to consanguinity, but it also reflected the effect of urban landscape on Ae. aegypti population dynamics. Area 2 presented the highest effective population size. This could be partially explained by the advantageous conditions that cemeteries offer to vector populations which can also spill over surrounding neighbourhoods. Our results suggest that vector programs should consider the heterogeneity of urban landscapes to improve the effectiveness of control measures.
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15
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Elnour MAB, Gloria-Soria A, Azrag RS, Alkhaibari AM, Powell JR, Salim B. Population Genetic Analysis of Aedes aegypti Mosquitoes From Sudan Revealed Recent Independent Colonization Events by the Two Subspecies. Front Genet 2022; 13:825652. [PMID: 35251133 PMCID: PMC8889412 DOI: 10.3389/fgene.2022.825652] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Accepted: 01/12/2022] [Indexed: 11/13/2022] Open
Abstract
Increases in arbovirus outbreaks in Sudan are vectored by Aedes aegypti, raising the medical importance of this mosquito. We genotyped 12 microsatellite loci in four populations of Ae. aegypti from Sudan, two from the East and two from the West, and analyzed them together with a previously published database of 31 worldwide populations to infer population structure and investigate the demographic history of this species in Sudan. Our results revealed the presence of two genetically distinct subspecies of Ae. aegypti in Sudan. These are Ae. aegypti aegypti in Eastern Sudan and Ae. aegypti formosus in Western Sudan. Clustering analysis showed that mosquitoes from East Sudan are genetically homogeneous, while we found population substructure in West Sudan. In the global context our results indicate that Eastern Sudan populations are genetically closer to Asian and American populations, while Western Sudan populations are related to East and West African populations. Approximate Bayesian Computation Analysis supports a scenario in which Ae. aegypti entered Sudan in at least two independent occasions nearly 70–80 years ago. This study provides a baseline database that can be used to determine the likely origin of new introductions for this invasive species into Sudan. The presence of the two subspecies in the country should be consider when designing interventions, since they display different behaviors regarding epidemiologically relevant parameters, such as blood feeding preferences and ability to transmit disease.
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Affiliation(s)
- Mohammed-Ahmed B. Elnour
- Department of Parasitology and Medical Entomology, Tropical Medicine Research Institute, National Center for Research, Khartoum, Sudan
| | - Andrea Gloria-Soria
- Department of Environmental Sciences, Center for Vector Biology and Zoonotic Diseases, The Connecticut Agricultural Experiment Station, New Haven, CT, United States
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, United States
| | - Rasha S. Azrag
- Department of Zoology, Faculty of Science, University of Khartoum, Khartoum, Sudan
| | - Abeer M. Alkhaibari
- Department of Biology, Faculty of Science, University of Tabuk, Tabuk, Saudi Arabia
| | - Jeffrey R. Powell
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, United States
| | - Bashir Salim
- Department of Parasitology, Faculty of Veterinary Medicine, University of Khartoum, Khartoum North, Sudan
- *Correspondence: Bashir Salim,
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16
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Review of the ecology and behaviour of Aedes aegypti and Aedes albopictus in Western Africa and implications for vector control. CURRENT RESEARCH IN PARASITOLOGY & VECTOR-BORNE DISEASES 2022; 2:100074. [PMID: 35726222 PMCID: PMC7612875 DOI: 10.1016/j.crpvbd.2021.100074] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Abstract
Western Africa is vulnerable to arboviral disease transmission, having recently experienced major outbreaks of chikungunya, dengue, yellow fever and Zika. However, there have been relatively few studies on the natural history of the two major human arbovirus vectors in this region, Aedes aegypti and Ae. albopictus, potentially limiting the implementation of effective vector control. We systematically searched for and reviewed relevant studies on the behaviour and ecology of Ae. aegypti and Ae. albopictus in Western Africa, published over the last 40 years. We identified 73 relevant studies, over half of which were conducted in Nigeria, Senegal, or Côte d'Ivoire. Most studies investigated the ecology of Ae. aegypti and Ae. albopictus, exploring the impact of seasonality and land cover on mosquito populations and identifying aquatic habitats. This review highlights the adaptation of Ae. albopictus to urban environments and its invasive potential, and the year-round maintenance of Ae. aegypti populations in water storage containers. However, important gaps were identified in the literature on the behaviour of both species, particularly Ae. albopictus. In Western Africa, Ae. aegypti and Ae. albopictus appear to be mainly anthropophilic and to bite predominantly during the day, but further research is needed to confirm this to inform planning of effective vector control strategies. We discuss the public health implications of these findings and comment on the suitability of existing and novel options for control in Western Africa.
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17
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Xia S, Dweck HKM, Lutomiah J, Sang R, McBride CS, Rose NH, Ayala D, Powell JR. Larval sites of the mosquito Aedes aegypti formosus in forest and domestic habitats in Africa and the potential association with oviposition evolution. Ecol Evol 2021; 11:16327-16343. [PMID: 34824830 PMCID: PMC8601902 DOI: 10.1002/ece3.8332] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2020] [Revised: 08/14/2021] [Accepted: 10/21/2021] [Indexed: 01/04/2023] Open
Abstract
Adaptations to anthropogenic domestic habitats contribute to the success of the mosquito Aedes aegypti as a major global vector of several arboviral diseases. The species inhabited African forests before expanding into domestic habitats and spreading to other continents. Despite a well-studied evolutionary history, how this species initially moved into human settlements in Africa remains unclear. During this initial habitat transition, African Ae. aegypti switched their larval sites from natural water containers like tree holes to artificial containers like clay pots. Little is known about how these natural versus artificial containers differ in their characteristics. Filling this knowledge gap could provide valuable information for studying the evolution of Ae. aegypti associated with larval habitat changes. As an initial effort, in this study, we characterized the microenvironments of Ae. aegypti larval sites in forest and domestic habitats in two African localities: La Lopé, Gabon, and Rabai, Kenya. Specifically, we measured the physical characteristics, microbial density, bacterial composition, and volatile chemical profiles of multiple larval sites. In both localities, comparisons between natural containers in the forests and artificial containers in the villages revealed significantly different microenvironments. We next examined whether the between-habitat differences in larval site microenvironments lead to differences in oviposition, a key behavior affecting larval distribution. Forest Ae. aegypti readily accepted the artificial containers we placed in the forests. Laboratory choice experiments also did not find distinct oviposition preferences between forest and village Ae. aegypti colonies. These results suggested that African Ae. aegypti are likely generalists in their larval site choices. This flexibility to accept various containers with a wide range of physical, microbial, and chemical conditions might allow Ae. aegypti to use human-stored water as fallback larval sites during dry seasons, which is hypothesized to have initiated the domestic evolution of Ae. aegypti.
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Affiliation(s)
- Siyang Xia
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
| | - Hany K. M. Dweck
- Department of Molecular, Cellular and Developmental BiologyYale UniversityNew HavenConnecticutUSA
| | - Joel Lutomiah
- Arbovirus/Viral Hemorrhagic Fever LaboratoryCenter for Virus ResearchKenya Medical Research InstituteNairobiKenya
| | - Rosemary Sang
- Arbovirus/Viral Hemorrhagic Fever LaboratoryCenter for Virus ResearchKenya Medical Research InstituteNairobiKenya
| | - Carolyn S. McBride
- Department of Ecology & Evolutionary BiologyPrinceton UniversityPrincetonNew JerseyUSA
- Princeton Neuroscience InstitutePrinceton UniversityPrincetonNew JerseyUSA
| | - Noah H. Rose
- Department of Ecology & Evolutionary BiologyPrinceton UniversityPrincetonNew JerseyUSA
- Princeton Neuroscience InstitutePrinceton UniversityPrincetonNew JerseyUSA
| | - Diego Ayala
- UMR MIVEGECUniv. MontpellierCNRSIRDMontpellierFrance
- CIRMFFrancevilleGabon
| | - Jeffrey R. Powell
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
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18
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Releasing incompatible males drives strong suppression across populations of wild and Wolbachia-carrying Aedes aegypti in Australia. Proc Natl Acad Sci U S A 2021; 118:2106828118. [PMID: 34607949 PMCID: PMC8521666 DOI: 10.1073/pnas.2106828118] [Citation(s) in RCA: 52] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/03/2021] [Indexed: 11/18/2022] Open
Abstract
With over 40% of humans at risk from mosquito-borne diseases such as dengue, yellow fever, chikungunya, and Zika, the development of environmentally friendly mosquito-control tools is critical. The release of reproductively incompatible male mosquitoes carrying a Wolbachia bacterium can drive mating events that kill the eggs. Through replicated treatment and control experiments in northern Australia, regular releases of Aedes aegypti males infected with a Wolbachia from Aedes albopictus was shown to drive strong population suppression in mosaic populations of wild-type (no Wolbachia) and wMel-Wolbachia–carrying Ae. aegypti. In a demonstration of bidirectional incompatibility between different Wolbachia strains in the field, we also demonstrate that one season’s suppression experiment can also show an ongoing effect into the following season. Releasing sterile or incompatible male insects is a proven method of population management in agricultural systems with the potential to revolutionize mosquito control. Through a collaborative venture with the “Debug” Verily Life Sciences team, we assessed the incompatible insect technique (IIT) with the mosquito vector Aedes aegypti in northern Australia in a replicated treatment control field trial. Backcrossing a US strain of Ae. aegypti carrying Wolbachia wAlbB from Aedes albopictus with a local strain, we generated a wAlbB2-F4 strain incompatible with both the wild-type (no Wolbachia) and wMel-Wolbachia Ae. aegypti now extant in North Queensland. The wAlbB2-F4 strain was manually mass reared with males separated from females using Verily sex-sorting technologies to obtain no detectable female contamination in the field. With community consent, we delivered a total of three million IIT males into three isolated landscapes of over 200 houses each, releasing ∼50 males per house three times a week over 20 wk. Detecting initial overflooding ratios of between 5:1 and 10:1, strong population declines well beyond 80% were detected across all treatment landscapes when compared to controls. Monitoring through the following season to observe the ongoing effect saw one treatment landscape devoid of adult Ae. aegypti early in the season. A second landscape showed reduced adults, and the third recovered fully. These encouraging results in suppressing both wild-type and wMel-Ae. aegypti confirms the utility of bidirectional incompatibility in the field setting, show the IIT to be robust, and indicate that the removal of this arbovirus vector from human-occupied landscapes may be achievable.
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19
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Mayanja MN, Mwiine FN, Lutwama JJ, Ssekagiri A, Egesa M, Thomson EC, Kohl A. Mosquito-borne arboviruses in Uganda: history, transmission and burden. J Gen Virol 2021; 102. [PMID: 34609940 DOI: 10.1099/jgv.0.001680] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Mosquito-transmitted arboviruses constitute a large proportion of emerging infectious diseases that are both a public health problem and a threat to animal populations. Many such viruses were identified in East Africa, a region where they remain important and from where new arboviruses may emerge. We set out to describe and review the relevant mosquito-borne viruses that have been identified specifically in Uganda. We focused on the discovery, burden, mode of transmission, animal hosts and clinical manifestation of those previously involved in disease outbreaks. A search for mosquito-borne arboviruses detected in Uganda was conducted using search terms 'Arboviruses in Uganda' and 'Mosquitoes and Viruses in Uganda' in PubMed and Google Scholar in 2020. Twenty-four mosquito-borne viruses from different animal hosts, humans and mosquitoes were documented. The majority of these were from family Peribunyaviridae, followed by Flaviviridae, Togaviridae, Phenuiviridae and only one each from family Rhabdoviridae and Reoviridae. Sixteen (66.7%) of the viruses were associated with febrile illnesses. Ten (41.7%) of them were first described locally in Uganda. Six of these are a public threat as they have been previously associated with disease outbreaks either within or outside Uganda. Historically, there is a high burden and endemicity of arboviruses in Uganda. Given the many diverse mosquito species known in the country, there is also a likelihood of many undescribed mosquito-borne viruses. Next generation diagnostic platforms have great potential to identify new viruses. Indeed, four novel viruses, two of which were from humans (Ntwetwe and Nyangole viruses) and two from mosquitoes (Kibale and Mburo viruses) were identified in the last decade using next generation sequencing. Given the unbiased approach of detection of viruses by this technology, its use will undoubtedly be critically important in the characterization of mosquito viromes which in turn will inform other diagnostic efforts.
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Affiliation(s)
- Martin N Mayanja
- School of Biosecurity, Biotechnical and Laboratory Sciences, College of Veterinary Medicine, Animal Resources and Biosecurity, Makerere University, Kampala, Uganda.,Department of Arbovirology, Emerging and Re-emerging Infectious Diseases, Uganda Virus Research Institute, Entebbe, Uganda.,MRC-University of Glasgow Centre for Virus Research, Glasgow G61 1QH, UK
| | - Frank N Mwiine
- School of Biosecurity, Biotechnical and Laboratory Sciences, College of Veterinary Medicine, Animal Resources and Biosecurity, Makerere University, Kampala, Uganda
| | - Julius J Lutwama
- Department of Arbovirology, Emerging and Re-emerging Infectious Diseases, Uganda Virus Research Institute, Entebbe, Uganda
| | - Alfred Ssekagiri
- Department of Immunology and Molecular Biology, School of Biomedical Sciences, College of Health Sciences, Makerere University, Kampala, Uganda
| | - Moses Egesa
- MRC/UVRI and LSHTM Uganda Research Unit, Entebbe, Uganda.,Department of Infection Biology, London School of Hygiene and Tropical Medicine, London, WC1E 7HT, UK
| | - Emma C Thomson
- MRC-University of Glasgow Centre for Virus Research, Glasgow G61 1QH, UK
| | - Alain Kohl
- MRC-University of Glasgow Centre for Virus Research, Glasgow G61 1QH, UK
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20
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Mayanja MN, Mwiine FN, Lutwama JJ, Ssekagiri A, Egesa M, Thomson EC, Kohl A. Mosquito-borne arboviruses in Uganda: history, transmission and burden. J Gen Virol 2021; 102. [PMID: 34166178 DOI: 10.1099/jgv.0.001615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Mosquito-transmitted arboviruses constitute a large proportion of emerging infectious diseases that are both a public health problem and a threat to animal populations. Many such viruses were identified in East Africa, a region where they remain important and from where new arboviruses may emerge. We set out to describe and review the relevant mosquito-borne viruses that have been identified specifically in Uganda. We focused on the discovery, burden, mode of transmission, animal hosts and clinical manifestation of those previously involved in disease outbreaks. A search for mosquito-borne arboviruses detected in Uganda was conducted using search terms 'Arboviruses in Uganda' and 'Mosquitoes and Viruses in Uganda' in PubMed and Google Scholar in 2020. Twenty-four mosquito-borne viruses from different animal hosts, humans and mosquitoes were documented. The majority of these were from family Peribunyaviridae, followed by Flaviviridae, Togaviridae, Phenuiviridae and only one each from family Rhabdoviridae and Reoviridae. Sixteen (66.7 %) of the viruses were associated with febrile illnesses. Ten (41.7 %) of them were first described locally in Uganda. Six of these are a public threat as they have been previously associated with disease outbreaks either within or outside Uganda. Historically, there is a high burden and endemicity of arboviruses in Uganda. Given the many diverse mosquito species known in the country, there is also a likelihood of many undescribed mosquito-borne viruses. New generation diagnostic platforms have great potential to identify new viruses. Indeed, four novel viruses, two of which were from humans (Ntwetwe and Nyangole viruses) and two from mosquitoes (Kibale and Mburo viruses) including the 2010 yellow fever virus (YFV) outbreak were identified in the last decade using next generation sequencing. Given the unbiased approach of detection of viruses by this technology, its use will undoubtedly be critically important in the characterization of mosquito viromes which in turn will inform other diagnostic efforts.
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Affiliation(s)
- Martin N Mayanja
- School of Biosecurity, Biotechnical and Laboratory Sciences, College of Veterinary Medicine, Animal Resources and Biosecurity, Makerere University, Kampala, Uganda.,Department of Arbovirology, Emerging and Re-emerging Infectious Diseases, Uganda Virus Research Institute, Entebbe, Uganda.,MRC-University of Glasgow Centre for Virus Research, Glasgow G61 1QH, UK
| | - Frank N Mwiine
- School of Biosecurity, Biotechnical and Laboratory Sciences, College of Veterinary Medicine, Animal Resources and Biosecurity, Makerere University, Kampala, Uganda
| | - Julius J Lutwama
- Department of Arbovirology, Emerging and Re-emerging Infectious Diseases, Uganda Virus Research Institute, Entebbe, Uganda
| | - Alfred Ssekagiri
- Department of Immunology and Molecular Biology, School of Biomedical Sciences, College of Health Sciences, Makerere University, Kampala, Uganda
| | - Moses Egesa
- MRC/UVRI and LSHTM Uganda Research Unit, Entebbe, Uganda.,Department of Infection Biology, London School of Hygiene and Tropical Medicine, London, WC1E 7HT, UK
| | - Emma C Thomson
- MRC-University of Glasgow Centre for Virus Research, Glasgow G61 1QH, UK
| | - Alain Kohl
- MRC-University of Glasgow Centre for Virus Research, Glasgow G61 1QH, UK
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21
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Yang B, Yang KD. Immunopathogenesis of Different Emerging Viral Infections: Evasion, Fatal Mechanism, and Prevention. Front Immunol 2021; 12:690976. [PMID: 34335596 PMCID: PMC8320726 DOI: 10.3389/fimmu.2021.690976] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2021] [Accepted: 06/14/2021] [Indexed: 12/16/2022] Open
Abstract
Different emerging viral infections may emerge in different regions of the world and pose a global pandemic threat with high fatality. Clarification of the immunopathogenesis of different emerging viral infections can provide a plan for the crisis management and prevention of emerging infections. This perspective article describes how an emerging viral infection evolves from microbial mutation, zoonotic and/or vector-borne transmission that progresses to a fatal infection due to overt viremia, tissue-specific cytotropic damage or/and immunopathology. We classified immunopathogenesis of common emerging viral infections into 4 categories: 1) deficient immunity with disseminated viremia (e.g., Ebola); 2) pneumocytotropism with/without later hyperinflammation (e.g., COVID-19); 3) augmented immunopathology (e.g., Hanta); and 4) antibody-dependent enhancement of infection with altered immunity (e.g., Dengue). A practical guide to early blocking of viral evasion, limiting viral load and identifying the fatal mechanism of an emerging viral infection is provided to prevent and reduce the transmission, and to do rapid diagnoses followed by the early treatment of virus neutralization for reduction of morbidity and mortality of an emerging viral infection such as COVID-19.
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Affiliation(s)
- Betsy Yang
- Department of Medicine, Kaiser Permanente Oakland Medical Center, Oakland, CA, United States
| | - Kuender D Yang
- DIvision of Medical Research, Mackay Children's Hospital, Taipei, Taiwan.,Institute of Clinical Medicine, National Yang Ming University, Taipei, Taiwan.,Department of Microbiology & Immunology, National Defense Medical Center, Taipei, Taiwan
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22
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Monsalve Y, Triana-Chávez O, Gómez-Palacio A. Population structure and ancestry prediction of Aedes aegypti (Diptera: Culicidae) supports a single African origin of Colombian populations. Mem Inst Oswaldo Cruz 2021; 116:e200441. [PMID: 34259736 PMCID: PMC8279122 DOI: 10.1590/0074-02760200441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Accepted: 06/07/2021] [Indexed: 11/03/2022] Open
Abstract
BACKGROUND A previous phylogeographic study revealed two Aedes aegypti African-related mitochondrial lineages distributed in Colombian's cities with different eco-epidemiologic characteristics with regard to dengue virus (DENV). It has been proposed these lineages might indicate independent invasion sources. OBJECTIVES Assessing to Colombian population structure and to support evidence of its probable source origin. METHODS We analysed a total of 267 individuals from cities of Bello, Riohacha and Villavicencio, which 241 were related to the West and East African mitochondrial lineages (termed here as WAL and EAL, respectively). Eight polymorphic microsatellite loci were analysed aiming population structure. FINDINGS Results indicate substantial gene flow among distant and low-connected cities composing a panmictic population with incipient local differentiation of Ae. aegypti is placed in Colombia. Likewise, genetic evidence indicates no significant differences among individuals related to WAL and EAL is placed. MAIN CONCLUSIONS Minimal genetic differentiation in low-connected Ae. aegypti populations of Colombia, and lack concordance between mitochondrial and nuclear genealogies suggest that Colombian Ae. aegypti shared a common demographic history. Under this scenario, we suggest current Ae. aegypti population structure reflects a single origin instead of contemporary migration, which founding populations have a single source from a mitochondrial polymorphic African ancient.
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Affiliation(s)
- Yoman Monsalve
- Universidad de Antioquia, Grupo de Biología y Control de Enfermedades Infecciosas, Medellin, Colombia
| | - Omar Triana-Chávez
- Universidad de Antioquia, Grupo de Biología y Control de Enfermedades Infecciosas, Medellin, Colombia
| | - Andrés Gómez-Palacio
- Universidad Pedagógica y Tecnológica de Colombia, Laboratorio de Investigación en Genética Evolutiva, Boyacá, Colombia
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23
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Spadar A, Phelan JE, Benavente ED, Campos M, Gomez LF, Mohareb F, Clark TG, Campino S. Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus. Parasit Vectors 2021; 14:332. [PMID: 34174947 PMCID: PMC8235865 DOI: 10.1186/s13071-021-04828-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2020] [Accepted: 06/07/2021] [Indexed: 12/15/2022] Open
Abstract
Mosquitoes of the genus Aedes are the main vectors of many viruses, e.g. dengue and Zika, which affect millions of people each year and for which there are limited treatment options. Understanding how Aedes mosquitoes tolerate high viral loads may lead to better disease control strategies. Elucidating endogenous viral elements (EVEs) within vector genomes may give exploitable biological insights. Previous studies have reported the presence of a large number of EVEs in Aedes genomes. Here we investigated if flavivirus EVEs are conserved across populations and different Aedes species by using ~ 500 whole genome sequence libraries from Aedes aegypti and Aedes albopictus, sourced from colonies and field mosquitoes across continents. We found that nearly all flavivirus EVEs in the Ae. aegypti reference genome originate from four separate putative viral integration events, and that they are highly conserved across geographically diverse samples. By contrast, flavivirus EVEs in the Ae. albopictus reference genome originate from up to nine distinct integration events and show low levels of conservation, even within samples from narrow geographical ranges. Our analysis suggests that flaviviruses integrated as long sequences and were subsequently fragmented and shuffled by transposable elements. Given that EVEs of Ae. aegypti and Ae. albopictus belong to different phylogenetic clades and have very differing levels of conservation, they may have different evolutionary origins and potentially different functional roles.
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Affiliation(s)
- Anton Spadar
- Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, UK
| | - Jody E Phelan
- Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, UK
| | - Ernest Diez Benavente
- Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, UK
| | - Monica Campos
- Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, UK
| | - Lara Ferrero Gomez
- Unidade de Ciências da Natureza, da Vida e do Ambiente, Universidade Jean Piaget de Cabo Verde, Praia, Cabo Verde
| | - Fady Mohareb
- School of Water, Energy and Environment, Cranfield University, Bedford, UK
| | - Taane G Clark
- Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, UK.
- Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London, UK.
| | - Susana Campino
- Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, UK.
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24
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Jiolle D, Moltini-Conclois I, Obame-Nkoghe J, Yangari P, Porciani A, Scheid B, Kengne P, Ayala D, Failloux AB, Paupy C. Experimental infections with Zika virus strains reveal high vector competence of Aedes albopictus and Aedes aegypti populations from Gabon (Central Africa) for the African virus lineage. Emerg Microbes Infect 2021; 10:1244-1253. [PMID: 34085899 PMCID: PMC8216262 DOI: 10.1080/22221751.2021.1939167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The two main Zika virus (ZIKV) vectors, Aedes albopictus and Aedes aegypti (invasive and native species, respectively), are present in Gabon (Central Africa). The aim of this study was to determine the entomological ZIKV risk associated with these mosquito species in Gabon by evaluating their vector competence for an African (i.e. representative of the endemic strains circulating in sub-Saharan Africa) and two Asian (i.e. representatives of exogenous epidemic strains that could be introduced) ZIKV strains. The transmission efficiency of one Ae. aegypti and two Ae. albopictus field-collected populations from Libreville and Franceville was assayed at day 7, 14 and 21 after experimental oral infection. The two mosquito species could transmit all three ZIKV strains already at day 7 post-infection, but transmission efficiency was higher for the African strain than the non-African strains (>60% versus <14%; incubation period of 14–21 days). The two mosquito species exhibited comparable vector competence for ZIKV, although the amount of viral particles (African strain) in saliva was significantly higher in Ae. albopictus than Ae. aegypti at day 14 post-infection. These findings suggest that overall, ZIKV risk in Gabon is mainly related to virus strains that circulate endemically across sub-Saharan Africa, although the transmission of non-African strains remain possible in case of introduction. Due to its high infestation indexes and ecological/geographical ranges, this risk appears mainly associated with Ae. albopictus. Vector surveillance and control methods against this invasive mosquito must be strengthened in the region to limit the risk of future outbreaks.
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Affiliation(s)
- Davy Jiolle
- MIVEGEC Laboratory, Montpellier University, IRD, CNRS, Montpellier, France
| | | | - Judicaël Obame-Nkoghe
- Ecologie des Systèmes Vectoriels, Centre Interdisciplinaire de Recherches Médicales de Franceville, Franceville, Gabon.,Laboratoire de Biologie Moléculaire et Cellulaire, Département de Biologie, Université des Sciences et Techniques de Masuku, Franceville, Gabon
| | - Patrick Yangari
- Ecologie des Systèmes Vectoriels, Centre Interdisciplinaire de Recherches Médicales de Franceville, Franceville, Gabon
| | - Angélique Porciani
- MIVEGEC Laboratory, Montpellier University, IRD, CNRS, Montpellier, France
| | - Bethsabée Scheid
- MIVEGEC Laboratory, Montpellier University, IRD, CNRS, Montpellier, France
| | - Pierre Kengne
- MIVEGEC Laboratory, Montpellier University, IRD, CNRS, Montpellier, France.,Ecologie des Systèmes Vectoriels, Centre Interdisciplinaire de Recherches Médicales de Franceville, Franceville, Gabon
| | - Diego Ayala
- MIVEGEC Laboratory, Montpellier University, IRD, CNRS, Montpellier, France.,Ecologie des Systèmes Vectoriels, Centre Interdisciplinaire de Recherches Médicales de Franceville, Franceville, Gabon
| | | | - Christophe Paupy
- MIVEGEC Laboratory, Montpellier University, IRD, CNRS, Montpellier, France
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25
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Ndiaye E, Ould Mohamed Salem Boukhary A, Diallo M, Diallo D, Labbo R, Boussès P, Le Goff G, Robert V. [Mosquitoes, Distribution and Specific Richness in Eight Countries of Africa: Cape Verde, Mauritania, Senegal, Gambia, Mali, Burkina Faso, Niger and Chad]. MEDECINE TROPICALE ET SANTE INTERNATIONALE 2021; 1:mtsibulletin.2021.109. [PMID: 35586589 PMCID: PMC9022770 DOI: 10.48327/mtsibulletin.2021.109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Accepted: 05/25/2021] [Indexed: 11/14/2022]
Abstract
Mosquitoes (Diptera, Culicidae) form a family of insects of considerable public health importance. Mention of their presence/absence was tackled in the literature and by specialized websites for eight African countries: Cape Verde, Mauritania, Senegal, Gambia, Mali, Burkina Faso, Niger and Chad. In total, 216 species have been recorded belonging to 13 genera: Anopheles (48 species), Aedeomyia (2), Aedes (62), Coquillettidia (6), Culex (54), Culiseta (1), Eretmapodites (7), Ficalbia (3), Lutzia (1), Mansonia (2), Mimomyia (7), Toxorhynchites (4) and Uranotaenia (19). The presence of these species in the study area is certain except for three species whose presence is doubtful. This specific richness represents 6% of the world's richness. The countries with the highest specific richness are Burkina Faso (162 species), Senegal (143) and Mali (110); the country with the lowest richness is Cape Verde (11). This richness is lower in the north in hyper-arid climate and higher in the south in sub-humid climate. Chad is the least well inventoried country. All species are considered native, with the exception of Ae. (Stegomyia ) albopictus (the Asian tiger mosquito) introduced in 2016 into Mali and possibly Ae. (Ochlerotatus ) caspius into Mauritania and Ae. (Stg. ) aegypti introduced into Nouakchott, Mauritania. This synthesis of the knowledge may be useful for vector control, public health, and future research.
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Affiliation(s)
- E.H. Ndiaye
- Pôle de zoologie médicale, Institut Pasteur de Dakar, B.P. 220, Dakar, Sénégal
| | - A. Ould Mohamed Salem Boukhary
- Université de Nouakchott Al-Aasriya, Unité de recherche génomes et milieux (jeune équipe associée à l'IRD), Laboratoire environnement, santé et société LE2S, BP 880, Nouakchott, Mauritanie; Aix Marseille Univ., IRD, AP-HM, SSA, VITROME, Marseille, France
| | - M. Diallo
- Pôle de zoologie médicale, Institut Pasteur de Dakar, B.P. 220, Dakar, Sénégal
| | - D. Diallo
- Pôle de zoologie médicale, Institut Pasteur de Dakar, B.P. 220, Dakar, Sénégal
| | - R. Labbo
- Centre de recherche médicale et sanitaire (CERMES), BP 10887, Niamey, Niger
| | - P. Boussès
- Unité MIVEGEC, Université de Montpellier, IRD, CNRS, Montpellier, France
| | - G. Le Goff
- Unité MIVEGEC, Université de Montpellier, IRD, CNRS, Montpellier, France
| | - V. Robert
- Unité MIVEGEC, Université de Montpellier, IRD, CNRS, Montpellier, France,*
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26
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Xia S. Laboratory Oviposition Choice of Aedes aegypti (Diptera: Culicidae) From Kenya and Gabon: Effects of Conspecific Larvae, Salinity, Shading, and Microbiome. JOURNAL OF MEDICAL ENTOMOLOGY 2021; 58:1021-1029. [PMID: 33511408 DOI: 10.1093/jme/tjaa285] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2020] [Indexed: 06/12/2023]
Abstract
The mosquito Aedes aegypti (L.) is the primary vector of several arboviruses. Mosquito control and surveillance are essential to restrict disease transmission, the effectiveness of which depends on our understanding of the mosquito's behaviors, including oviposition. Previous studies have identified a variety of oviposition cues. However, most of these studies involved only Ae. aegypti outside of the species' native range, Africa. Populations outside Africa differ in their genetics and some behaviors from their African counterparts, suggesting possibly different oviposition preferences. Within Africa, Ae. aegypti can be found in both ancestral forest habitats and domestic habitats. The African domestic populations may represent an intermediate state between the forest and the truly domesticated non-African populations. Comparing mosquitoes from these three habitats (African forest, African domestic, and non-African domestic) might provide insight into the evolution of oviposition behavior. In this study, I examined the oviposition choices of multiple Ae. aegypti colonies from all three habitats in laboratory settings. I applied a two-choice assay to test four oviposition cues: the preexistence of conspecific larvae, salinity, shading, and microbiome. A subset of African colonies showed similar oviposition choices as their non-African counterparts, whereas the rest show little response to the factors tested. Within the African colonies, oviposition choices of the domestic colonies were significantly different from the forest colonies in most experiments. Yet, their preferences were not always intermediate between that of mosquitoes from the other two habitats. Collectively, this study adds to our understanding of Ae. aegypti oviposition, especially in previously understudied African populations.
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Affiliation(s)
- Siyang Xia
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA
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27
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Agboli E, Zahouli JBZ, Badolo A, Jöst H. Mosquito-Associated Viruses and Their Related Mosquitoes in West Africa. Viruses 2021; 13:v13050891. [PMID: 34065928 PMCID: PMC8151702 DOI: 10.3390/v13050891] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Revised: 05/05/2021] [Accepted: 05/06/2021] [Indexed: 12/13/2022] Open
Abstract
Mosquito-associated viruses (MAVs), including mosquito-specific viruses (MSVs) and mosquito-borne (arbo)viruses (MBVs), are an increasing public, veterinary, and global health concern, and West Africa is projected to be the next front for arboviral diseases. As in-depth knowledge of the ecologies of both western African MAVs and related mosquitoes is still limited, we review available and comprehensive data on their diversity, abundance, and distribution. Data on MAVs’ occurrence and related mosquitoes were extracted from peer-reviewed publications. Data on MSVs, and mosquito and vertebrate host ranges are sparse. However, more data are available on MBVs (i.e., dengue, yellow fever, chikungunya, Zika, and Rift Valley fever viruses), detected in wild and domestic animals, and humans, with infections more concentrated in urban areas and areas affected by strong anthropogenic changes. Aedes aegypti, Culex quinquefasciatus, and Aedes albopictus are incriminated as key arbovirus vectors. These findings outline MAV, related mosquitoes, key knowledge gaps, and future research areas. Additionally, these data highlight the need to increase our understanding of MAVs and their impact on host mosquito ecology, to improve our knowledge of arbovirus transmission, and to develop specific strategies and capacities for arboviral disease surveillance, diagnostic, prevention, control, and outbreak responses in West Africa.
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Affiliation(s)
- Eric Agboli
- Molecular Biology and Immunology Department, Bernhard Nocht Institute for Tropical Medicine, 20359 Hamburg, Germany;
- Department of Epidemiology and Biostatistics, School of Public Health, University of Health and Allied Sciences, Ho PMB 31, Ghana
| | - Julien B. Z. Zahouli
- Centre d’Entomologie Médicale et Vétérinaire, Université Alassane Ouattara, Bouake, 27 BP 529 Abidjan 27, Cote D’Ivoire;
- Centre Suisse de Recherches Scientifiques en Côte d’Ivoire, Département de Recherche et Développement, 01 BP 1303 Abidjan 01, Cote D’Ivoire
- Department of Epidemiology and Public Health, Swiss Tropical and Public Health Institute, 4051 Basel, Switzerland
| | - Athanase Badolo
- Laboratory of Fundamental and Applied Entomology, Universitée Joseph Ki-Zerbo, Ouagadougou 03 BP 7021, Burkina Faso;
| | - Hanna Jöst
- Bernhard Nocht Institute for Tropical Medicine, WHO Collaborating Centre for Arbovirus and Hemorrhagic Fever Reference and Research, 20359 Hamburg, Germany
- Correspondence:
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28
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Bennett KL, McMillan WO, Loaiza JR. The genomic signal of local environmental adaptation in Aedes aegypti mosquitoes. Evol Appl 2021; 14:1301-1313. [PMID: 34025769 PMCID: PMC8127705 DOI: 10.1111/eva.13199] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Revised: 12/22/2020] [Accepted: 01/21/2021] [Indexed: 12/19/2022] Open
Abstract
Local adaptation is important when predicting arthropod-borne disease risk because of its impacts on vector population fitness and persistence. However, the extent that vector populations are adapted to the environment generally remains unknown. Despite low population structure and high gene flow in Aedes aegypti mosquitoes across Panama, excepting the province of Bocas del Toro, we identified 128 candidate SNPs, clustered within 17 genes, which show a strong genomic signal of local environmental adaptation. This putatively adaptive variation occurred across fine geographical scales with the composition and frequency of candidate adaptive loci differing between populations in wet tropical environments along the Caribbean coast and dry tropical conditions typical of the Pacific coast. Temperature and vegetation were important predictors of adaptive genomic variation in Ae. aegypti with several potential areas of local adaptation identified. Our study lays the foundations of future work to understand whether environmental adaptation in Ae. aegypti impacts the arboviral disease landscape and whether this could either aid or hinder efforts of population control.
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Affiliation(s)
- Kelly L. Bennett
- Smithsonian Tropical Research InstituteBalboa AnconRepublic of Panama
| | - W. Owen McMillan
- Smithsonian Tropical Research InstituteBalboa AnconRepublic of Panama
| | - Jose R. Loaiza
- Smithsonian Tropical Research InstituteBalboa AnconRepublic of Panama
- Instituto de Investigaciones Científicas y Servicios de Alta TecnologíaPanamáRepublic of Panama
- Programa Centroamericano de Maestría en EntomologíaUniversidad de PanamáPanamáRepublic of Panama
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29
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Rahman RU, Cosme LV, Costa MM, Carrara L, Lima JBP, Martins AJ. Insecticide resistance and genetic structure of Aedes aegypti populations from Rio de Janeiro State, Brazil. PLoS Negl Trop Dis 2021; 15:e0008492. [PMID: 33591988 PMCID: PMC7909666 DOI: 10.1371/journal.pntd.0008492] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Revised: 02/26/2021] [Accepted: 01/22/2021] [Indexed: 12/25/2022] Open
Abstract
Vector control largely relies on neurotoxic chemicals, and insecticide resistance (IR) directly threatens their effectiveness. In some cases, specific alleles cause IR, and knowledge of the genetic diversity and gene flow among mosquito populations is crucial to track their arrival, rise, and spread. Here we evaluated Aedes aegypti populations’ susceptibility status, collected in 2016 from six different municipalities of Rio de Janeiro state (RJ), to temephos, pyriproxyfen, malathion, and deltamethrin. We collected eggs of Ae. aegypti in Campos dos Goytacazes (Cgy), Itaperuna (Ipn), Iguaba Grande (Igg), Itaboraí (Ibr), Mangaratiba (Mgr), and Vassouras (Vsr). We followed the World Health Organization (WHO) guidelines and investigated the degree of susceptibility/resistance of mosquitoes to these insecticides. We used the Rockefeller strain as a susceptible positive control. We genotyped the V1016I and F1534C knockdown resistance (kdr) alleles using qPCR TaqMan SNP genotyping assay. Besides, with the use of Ae. aegypti SNP-chip, we performed genomic population analyses by genotyping more than 15,000 biallelic SNPs in mosquitoes from each population. We added previous data from populations from other countries to evaluate the ancestry of RJ populations. All RJ Ae. aegypti populations were susceptible to pyriproxyfen and malathion and highly resistant to deltamethrin. The resistance ratios for temephos was below 3,0 in Cgy, Ibr, and Igg populations, representing the lowest rates since IR monitoring started in this Brazilian region. We found the kdr alleles in high frequencies in all populations, partially justifying the observed resistance to pyrethroid. Population genetics analysis showed that Ae. aegypti revealed potential higher migration among some RJ localities and low genetic structure for most of them. Future population genetic studies, together with IR data in Ae aegypti on a broader scale, can help us predict the gene flow within and among the Brazilian States, allowing us to track the dynamics of arrival and changes in the frequency of IR alleles, and providing critical information to improving vector control program. Monitoring of insecticide resistance (IR) is mandatory for the effectiveness of vector control programs. We investigate six populations of Aedes aegypti regarding their IR status towards insecticides previously or currently in use, their frequency of IR alleles and resistance ratio, their genetic ancestry and structure, and the gene flow. We observed that Ae. aegypti populations from RJ are becoming susceptible to the larvicide organophosphate temephos. The resistance ratios of temephos are lower among populations where gene flow might be occurring. All RJ populations are highly resistant to deltamethrin, partially explained by the high frequency of kdr alleles. Besides, all populations are susceptible to pyriproxyfen’s insect growth regulator and the organophosphate malathion. Population genomic analyses using more than 15,000 SNPs identified three potential genetic clusters within RJ populations, with higher gene flow to and out of the touristic region called Região dos Lagos. IR data, together with knowledge of the genetic structure and gene flow among different mosquito populations, can help with vector control program decisions.
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Affiliation(s)
- Rafi Ur Rahman
- Laboratório de Fisiologia e Controle de Artrópodes Vetores, Instituto Oswaldo Cruz/ FIOCRUZ, Rio de Janeiro, Brazil
| | - Luciano Veiga Cosme
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, United States of America
| | - Monique Melo Costa
- Laboratório de Fisiologia e Controle de Artrópodes Vetores, Instituto Oswaldo Cruz/ FIOCRUZ, Rio de Janeiro, Brazil
| | - Luana Carrara
- Laboratório de Fisiologia e Controle de Artrópodes Vetores, Instituto Oswaldo Cruz/ FIOCRUZ, Rio de Janeiro, Brazil
| | - José Bento Pereira Lima
- Laboratório de Fisiologia e Controle de Artrópodes Vetores, Instituto Oswaldo Cruz/ FIOCRUZ, Rio de Janeiro, Brazil
| | - Ademir Jesus Martins
- Laboratório de Fisiologia e Controle de Artrópodes Vetores, Instituto Oswaldo Cruz/ FIOCRUZ, Rio de Janeiro, Brazil
- Instituto Nacional de Ciência e Tecnologia em Entomologia Molecular, Rio de Janeiro, Brazil
- * E-mail:
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30
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Aubry F, Jacobs S, Darmuzey M, Lequime S, Delang L, Fontaine A, Jupatanakul N, Miot EF, Dabo S, Manet C, Montagutelli X, Baidaliuk A, Gámbaro F, Simon-Lorière E, Gilsoul M, Romero-Vivas CM, Cao-Lormeau VM, Jarman RG, Diagne CT, Faye O, Faye O, Sall AA, Neyts J, Nguyen L, Kaptein SJF, Lambrechts L. Recent African strains of Zika virus display higher transmissibility and fetal pathogenicity than Asian strains. Nat Commun 2021; 12:916. [PMID: 33568638 PMCID: PMC7876148 DOI: 10.1038/s41467-021-21199-z] [Citation(s) in RCA: 58] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2020] [Accepted: 01/16/2021] [Indexed: 11/09/2022] Open
Abstract
The global emergence of Zika virus (ZIKV) revealed the unprecedented ability for a mosquito-borne virus to cause congenital birth defects. A puzzling aspect of ZIKV emergence is that all human outbreaks and birth defects to date have been exclusively associated with the Asian ZIKV lineage, despite a growing body of laboratory evidence pointing towards higher transmissibility and pathogenicity of the African ZIKV lineage. Whether this apparent paradox reflects the use of relatively old African ZIKV strains in most laboratory studies is unclear. Here, we experimentally compare seven low-passage ZIKV strains representing the recently circulating viral genetic diversity. We find that recent African ZIKV strains display higher transmissibility in mosquitoes and higher lethality in both adult and fetal mice than their Asian counterparts. We emphasize the high epidemic potential of African ZIKV strains and suggest that they could more easily go unnoticed by public health surveillance systems than Asian strains due to their propensity to cause fetal loss rather than birth defects. Here, the authors compare seven low passage Zika virus (ZIKV) strains representing the recently circulating viral genetic diversity of African and Asian strains and find that African ZIKV strains have higher transmissibility in mosquitoes and higher lethality in both adult and fetal mice.
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Affiliation(s)
- Fabien Aubry
- Insect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France
| | - Sofie Jacobs
- KU Leuven Department of Microbiology, Immunology and Transplantation, Rega Institute for Medical Research, Laboratory of Virology and Chemotherapy, Leuven, Belgium
| | - Maïlis Darmuzey
- GIGA-Stem Cells/GIGA-Neurosciences, Interdisciplinary Cluster for Applied Genoproteomics (GIGA-R), C.H.U. Sart Tilman, University of Liège, Liège, Belgium
| | - Sebastian Lequime
- KU Leuven Department of Microbiology, Immunology and Transplantation, Rega Institute, Laboratory of Clinical and Epidemiological Virology, Leuven, Belgium.,Cluster of Microbial Ecology, Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, The Netherlands
| | - Leen Delang
- KU Leuven Department of Microbiology, Immunology and Transplantation, Rega Institute for Medical Research, Laboratory of Virology and Chemotherapy, Leuven, Belgium
| | - Albin Fontaine
- Unité Parasitologie et Entomologie, Département Microbiologie et Maladies Infectieuses, Institut de Recherche Biomédicale des Armées (IRBA), Marseille, France.,IRD, SSA, AP-HM, UMR Vecteurs-Infections Tropicales et Méditerranéennes (VITROME), Aix Marseille University, Marseille, France.,IHU Méditerranée Infection, Marseille, France
| | - Natapong Jupatanakul
- Insect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France.,National Center for Genetic Engineering and Biotechnology (BIOTEC), Pathum Thani, Thailand
| | - Elliott F Miot
- Insect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France
| | - Stéphanie Dabo
- Insect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France
| | - Caroline Manet
- Mouse Genetics Laboratory, Institut Pasteur, Paris, France
| | | | - Artem Baidaliuk
- Insect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France.,Evolutionary Genomics of RNA Viruses Group, Institut Pasteur, Paris, France
| | - Fabiana Gámbaro
- Evolutionary Genomics of RNA Viruses Group, Institut Pasteur, Paris, France
| | | | - Maxime Gilsoul
- GIGA-Stem Cells/GIGA-Neurosciences, Interdisciplinary Cluster for Applied Genoproteomics (GIGA-R), C.H.U. Sart Tilman, University of Liège, Liège, Belgium
| | - Claudia M Romero-Vivas
- Laboratorio de Enfermedades Tropicales, Departamento de Medicina, Fundación Universidad del Norte, Barranquilla, Colombia
| | | | - Richard G Jarman
- Viral Diseases Branch, Walter Reed Army Institute of Research, Silver Spring, MD, USA
| | - Cheikh T Diagne
- Arbovirus and Viral Hemorrhagic Fevers Unit, Institut Pasteur Dakar, Dakar, Senegal
| | - Oumar Faye
- Arbovirus and Viral Hemorrhagic Fevers Unit, Institut Pasteur Dakar, Dakar, Senegal
| | - Ousmane Faye
- Arbovirus and Viral Hemorrhagic Fevers Unit, Institut Pasteur Dakar, Dakar, Senegal
| | - Amadou A Sall
- Arbovirus and Viral Hemorrhagic Fevers Unit, Institut Pasteur Dakar, Dakar, Senegal
| | - Johan Neyts
- KU Leuven Department of Microbiology, Immunology and Transplantation, Rega Institute for Medical Research, Laboratory of Virology and Chemotherapy, Leuven, Belgium
| | - Laurent Nguyen
- GIGA-Stem Cells/GIGA-Neurosciences, Interdisciplinary Cluster for Applied Genoproteomics (GIGA-R), C.H.U. Sart Tilman, University of Liège, Liège, Belgium
| | - Suzanne J F Kaptein
- KU Leuven Department of Microbiology, Immunology and Transplantation, Rega Institute for Medical Research, Laboratory of Virology and Chemotherapy, Leuven, Belgium.
| | - Louis Lambrechts
- Insect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France.
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31
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Aubry F, Dabo S, Manet C, Filipović I, Rose NH, Miot EF, Martynow D, Baidaliuk A, Merkling SH, Dickson LB, Crist AB, Anyango VO, Romero-Vivas CM, Vega-Rúa A, Dusfour I, Jiolle D, Paupy C, Mayanja MN, Lutwama JJ, Kohl A, Duong V, Ponlawat A, Sylla M, Akorli J, Otoo S, Lutomiah J, Sang R, Mutebi JP, Cao-Lormeau VM, Jarman RG, Diagne CT, Faye O, Faye O, Sall AA, McBride CS, Montagutelli X, Rašić G, Lambrechts L. Enhanced Zika virus susceptibility of globally invasive Aedes aegypti populations. Science 2021; 370:991-996. [PMID: 33214283 DOI: 10.1126/science.abd3663] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2020] [Accepted: 09/16/2020] [Indexed: 12/18/2022]
Abstract
The drivers and patterns of zoonotic virus emergence in the human population are poorly understood. The mosquito Aedes aegypti is a major arbovirus vector native to Africa that invaded most of the world's tropical belt over the past four centuries, after the evolution of a "domestic" form that specialized in biting humans and breeding in water storage containers. Here, we show that human specialization and subsequent spread of A. aegypti out of Africa were accompanied by an increase in its intrinsic ability to acquire and transmit the emerging human pathogen Zika virus. Thus, the recent evolution and global expansion of A. aegypti promoted arbovirus emergence not solely through increased vector-host contact but also as a result of enhanced vector susceptibility.
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Affiliation(s)
- Fabien Aubry
- Insect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France
| | - Stéphanie Dabo
- Insect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France
| | - Caroline Manet
- Mouse Genetics Laboratory, Institut Pasteur, Paris, France
| | - Igor Filipović
- Mosquito Control Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia
| | - Noah H Rose
- Department of Ecology & Evolutionary Biology, Princeton University, Princeton, NJ, USA.,Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | - Elliott F Miot
- Insect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France.,Collège Doctoral, Sorbonne Université, Paris, France
| | - Daria Martynow
- Insect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France
| | - Artem Baidaliuk
- Insect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France.,Collège Doctoral, Sorbonne Université, Paris, France
| | - Sarah H Merkling
- Insect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France
| | - Laura B Dickson
- Insect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France
| | - Anna B Crist
- Insect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France
| | - Victor O Anyango
- Insect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France
| | - Claudia M Romero-Vivas
- Laboratorio de Enfermedades Tropicales, Departamento de Medicina, Fundación Universidad del Norte, Barranquilla, Colombia
| | - Anubis Vega-Rúa
- Institut Pasteur of Guadeloupe, Laboratory of Vector Control Research, Transmission Reservoir and Pathogens Diversity Unit, Morne Jolivière, Guadeloupe, France
| | - Isabelle Dusfour
- Vector Control and Adaptation, Institut Pasteur de la Guyane, Vectopole Amazonien Emile Abonnenc, Cayenne, French Guiana, France
| | - Davy Jiolle
- MIVEGEC, Montpellier University, IRD, CNRS, Montpellier, France.,Centre Interdisciplinaire de Recherches Médicales de Franceville, Franceville, Gabon
| | - Christophe Paupy
- MIVEGEC, Montpellier University, IRD, CNRS, Montpellier, France.,Centre Interdisciplinaire de Recherches Médicales de Franceville, Franceville, Gabon
| | - Martin N Mayanja
- Department of Arbovirology, Uganda Virus Research Institute, Entebbe, Uganda
| | - Julius J Lutwama
- Department of Arbovirology, Uganda Virus Research Institute, Entebbe, Uganda
| | - Alain Kohl
- MRC-University of Glasgow Centre for Virus Research, Glasgow, UK
| | - Veasna Duong
- Virology Unit, Institut Pasteur in Cambodia, Phnom Penh, Cambodia
| | - Alongkot Ponlawat
- Department of Entomology, Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand
| | - Massamba Sylla
- Unité d'Entomologie, de Bactériologie, de Virologie, Département de Biologie Animale, Faculté des Sciences et Techniques, Université Cheikh Anta Diop, Dakar, Senegal
| | - Jewelna Akorli
- Department of Parasitology, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana
| | - Sampson Otoo
- Department of Parasitology, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana
| | - Joel Lutomiah
- Arbovirus/Viral Hemorrhagic Fevers Laboratory, Center for Virus Research, Kenya Medical Research Institute, Nairobi, Kenya
| | - Rosemary Sang
- Arbovirus/Viral Hemorrhagic Fevers Laboratory, Center for Virus Research, Kenya Medical Research Institute, Nairobi, Kenya
| | - John-Paul Mutebi
- Centers for Disease Control and Prevention, Fort Collins, CO, USA
| | | | - Richard G Jarman
- Viral Diseases Branch, Walter Reed Army Institute of Research, Silver Spring, MD, USA
| | - Cheikh T Diagne
- Institut Pasteur Dakar, Arbovirus and Viral Hemorrhagic Fevers Unit, Dakar, Senegal
| | - Oumar Faye
- Institut Pasteur Dakar, Arbovirus and Viral Hemorrhagic Fevers Unit, Dakar, Senegal
| | - Ousmane Faye
- Institut Pasteur Dakar, Arbovirus and Viral Hemorrhagic Fevers Unit, Dakar, Senegal
| | - Amadou A Sall
- Institut Pasteur Dakar, Arbovirus and Viral Hemorrhagic Fevers Unit, Dakar, Senegal
| | - Carolyn S McBride
- Department of Ecology & Evolutionary Biology, Princeton University, Princeton, NJ, USA.,Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | | | - Gordana Rašić
- Mosquito Control Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia
| | - Louis Lambrechts
- Insect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France.
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32
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Dhole S, Lloyd AL, Gould F. Gene Drive Dynamics in Natural Populations: The Importance of Density Dependence, Space, and Sex. ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS 2020; 51:505-531. [PMID: 34366722 PMCID: PMC8340601 DOI: 10.1146/annurev-ecolsys-031120-101013] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
The spread of synthetic gene drives is often discussed in the context of panmictic populations connected by gene flow and described with simple deterministic models. Under such assumptions, an entire species could be altered by releasing a single individual carrying an invasive gene drive, such as a standard homing drive. While this remains a theoretical possibility, gene drive spread in natural populations is more complex and merits a more realistic assessment. The fate of any gene drive released in a population would be inextricably linked to the population's ecology. Given the uncertainty often involved in ecological assessment of natural populations, understanding the sensitivity of gene drive spread to important ecological factors is critical. Here we review how different forms of density dependence, spatial heterogeneity, and mating behaviors can impact the spread of self-sustaining gene drives. We highlight specific aspects of gene drive dynamics and the target populations that need further research.
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Affiliation(s)
- Sumit Dhole
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, North Carolina 27695, USA
| | - Alun L Lloyd
- Biomathematics Graduate Program and Department of Mathematics, North Carolina State University, Raleigh, North Carolina 27695-8213, USA
- Genetic Engineering and Society Center, North Carolina State University, Raleigh, North Carolina 27695-7565, USA
| | - Fred Gould
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, North Carolina 27695, USA
- Genetic Engineering and Society Center, North Carolina State University, Raleigh, North Carolina 27695-7565, USA
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Soghigian J, Gloria‐Soria A, Robert V, Le Goff G, Failloux A, Powell JR. Genetic evidence for the origin of Aedes aegypti, the yellow fever mosquito, in the southwestern Indian Ocean. Mol Ecol 2020; 29:3593-3606. [PMID: 33463828 PMCID: PMC7589284 DOI: 10.1111/mec.15590] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Revised: 06/14/2020] [Accepted: 07/23/2020] [Indexed: 01/07/2023]
Abstract
Aedes aegypti is among the best-studied mosquitoes due to its critical role as a vector of human pathogens and ease of laboratory rearing. Until now, this species was thought to have originated in continental Africa, and subsequently colonized much of the world following the establishment of global trade routes. However, populations of this mosquito on the islands in the southwestern Indian Ocean (SWIO), where the species occurs with its nearest relatives referred to as the Aegypti Group, have received little study. We re-evaluated the evolutionary history of Ae. aegypti and these relatives, using three data sets: nucleotide sequence data, 18,489 SNPs and 12 microsatellites. We found that: (a) the Aegypti Group diverged 16 MYA (95% HPD: 7-28 MYA) from its nearest African/Asian ancestor; (b) SWIO populations of Ae. aegypti are basal to continental African populations; (c) after diverging 7 MYA (95% HPD: 4-15 MYA) from its nearest formally described relative (Ae. mascarensis), Ae. aegypti moved to continental Africa less than 85,000 years ago, where it recently (<1,000 years ago) split into two recognized subspecies Ae. aegypti formosus and a human commensal, Ae. aegypti aegypti; (d) the Madagascar samples form a clade more distant from all other Ae. aegypti than the named species Ae. mascarensis, implying that Madagascar may harbour a new cryptic species; and (e) there is evidence of introgression between Ae. mascarensis and Ae. aegypti on Réunion, and between the two subspecies elsewhere in the SWIO, a likely consequence of recent introductions of domestic Ae. aegypti aegypti from Asia.
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Affiliation(s)
- John Soghigian
- Yale UniversityNew HavenCTUSA
- Department of Entomology and Plant PathologyNorth Carolina State UniversityRaleighNCUSA
| | - Andrea Gloria‐Soria
- Yale UniversityNew HavenCTUSA
- Center for Vector Biology & Zoonotic DiseasesDepartment of Environmental SciencesThe Connecticut Agricultural Experiment StationNew HavenCTUSA
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Wilson-Bahun TA, Kamgang B, Lenga A, Wondji CS. Larval ecology and infestation indices of two major arbovirus vectors, Aedes aegypti and Aedes albopictus (Diptera: Culicidae), in Brazzaville, the capital city of the Republic of the Congo. Parasit Vectors 2020; 13:492. [PMID: 32977841 PMCID: PMC7519569 DOI: 10.1186/s13071-020-04374-x] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Accepted: 09/20/2020] [Indexed: 01/14/2023] Open
Abstract
BACKGROUND Invasive mosquito species, such as Aedes albopictus in Congo can affect the distribution of native species, changing the vector composition and pattern of disease transmission. Here, we comparatively establish the geographical distribution and larval habitat preference of Ae. aegypti and Ae. albopictus and the risk of arbovirus disease outbreaks using Stegomyia indices in the city of Brazzaville, the capital of the Republic of the Congo. METHODS Human dwelling surveys of water-holding containers for immature stages of Aedes was carried out in December 2017 in Brazzaville through a random cluster sampling method. A total of 268 human dwellings distributed in 9 boroughs and 27 neighbourhoods were surveyed across the city. RESULTS Overall, 455 potential larval habitats were surveyed. Both Ae. aegypti and Ae. albopictus were collected across the city with an overall high prevalence of Ae. aegypti (53.1%) compared to Ae. albopictus (46.9%). Geographical distribution analysis showed that Ae. aegypti was more abundant (mean = 6.6 ± 1.4) in neighbourhoods located in downtown, while the abundance of Ae. albopictus was low (mean = 3.5 ± 0.6) in suburbs. Peridomestic containers, especially discarded tanks, were the most strongly colonized productive larval habitat for both mosquito species with the prevalence of 56.4% and 53.1% for Ae. aegypti and Ae. albopictus, respectively. Globally, the house index (HI), Breteau index (BI) and container index (CI) were high for Ae. aegypti (26.6%, 38.4% and 22.6%) and Ae. albopictus (33.3%, 49.6% and 26.6%) compared to the transmission risk threshold (5%, 5% and 20%) established by the WHO/PAHO. Overall, pupae-based indices (the pupae index and the pupae per person index) were not significantly different between Ae. aegypti (273.4% and 23.2%) and Ae. albopictus (228.8% and 19.5%). CONCLUSIONS The findings of this study suggest a high risk for transmission of arbovirus diseases in Brazzaville and call for an urgent need to implement vector control strategies against these vectors in the Republic of the Congo.
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Affiliation(s)
- Theodel A Wilson-Bahun
- Centre for Research in Infectious Diseases (CRID), P.O. Box 13591, Yaoundé, Cameroon.,Laboratory of Biodiversity and Animal Ecology, Department of Animal Biology and Physiology, Faculty of Sciences and Technology, Marien Ngouabi University, P.O. Box 69, Brazzaville, Congo
| | - Basile Kamgang
- Centre for Research in Infectious Diseases (CRID), P.O. Box 13591, Yaoundé, Cameroon.
| | - Arsène Lenga
- Laboratory of Biodiversity and Animal Ecology, Department of Animal Biology and Physiology, Faculty of Sciences and Technology, Marien Ngouabi University, P.O. Box 69, Brazzaville, Congo
| | - Charles S Wondji
- Centre for Research in Infectious Diseases (CRID), P.O. Box 13591, Yaoundé, Cameroon.,Liverpool School of Tropical Medicine, Pembroke Place, Liverpool, L3 5QA, UK
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Stensmyr MC. Mosquito Biology: How a Quest for Water Spawned a Thirst for Blood. Curr Biol 2020; 30:R1046-R1049. [PMID: 32961160 PMCID: PMC7515752 DOI: 10.1016/j.cub.2020.07.030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
The invasive yellow-fever mosquito Aedes aegypti preferentially feeds on human blood. A new study finds that human-biting in this important disease vector might just be an unfortunate side effect of breeding in human-stored water.
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Rose NH, Sylla M, Badolo A, Lutomiah J, Ayala D, Aribodor OB, Ibe N, Akorli J, Otoo S, Mutebi JP, Kriete AL, Ewing EG, Sang R, Gloria-Soria A, Powell JR, Baker RE, White BJ, Crawford JE, McBride CS. Climate and Urbanization Drive Mosquito Preference for Humans. Curr Biol 2020; 30:3570-3579.e6. [PMID: 32707056 PMCID: PMC7511451 DOI: 10.1016/j.cub.2020.06.092] [Citation(s) in RCA: 105] [Impact Index Per Article: 26.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2020] [Revised: 06/18/2020] [Accepted: 06/26/2020] [Indexed: 12/24/2022]
Abstract
The majority of mosquito-borne illness is spread by a few mosquito species that have evolved to specialize in biting humans, yet the precise causes of this behavioral shift are poorly understood. We address this gap in the arboviral vector Aedes aegypti. We first collect and characterize the behavior of mosquitoes from 27 sites scattered across the species' ancestral range in sub-Saharan Africa, revealing previously unrecognized variation in preference for human versus animal odor. We then use modeling to show that over 80% of this variation can be predicted by two ecological factors-dry season intensity and human population density. Finally, we integrate this information with whole-genome sequence data from 375 individual mosquitoes to identify a single underlying ancestry component linked to human preference. Genetic changes associated with human specialist ancestry were concentrated in a few chromosomal regions. Our findings suggest that human-biting in this important disease vector originally evolved as a by-product of breeding in human-stored water in areas where doing so provided the only means to survive the long, hot dry season. Our model also predicts that the rapid urbanization currently taking place in Africa will drive further mosquito evolution, causing a shift toward human-biting in many large cities by 2050.
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Affiliation(s)
- Noah H Rose
- Department of Ecology & Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA; Princeton Neuroscience Institute, Princeton University, Princeton, NJ 08544, USA.
| | - Massamba Sylla
- Unité d'Entomologie, de Bactériologie, de Virologie, Département de Biologie Animale, Faculté des Sciences et Techniques, Université Cheikh Anta DIOP BP 5005 Dakar, Senegal
| | - Athanase Badolo
- Laboratory of Fundamental and Applied Entomology, Université Joseph Ki-Zerbo, 03 BP 7021 Ouagadougou, Burkina Faso
| | - Joel Lutomiah
- Arbovirus/Viral Hemorrhagic Fevers Laboratory, Center for Virus Research, Kenya Medical Research Institute (KEMRI), Nairobi, Kenya
| | - Diego Ayala
- UMR MIVEGEC, IRD, CNRS, Univ. Montpellier, 911 avenue Agropolis, BP 64501, 34394 Montpellier, France; Le Centre International de Recherches Médicales de Franceville, BP 769, Franceville, Gabon
| | | | - Nnenna Ibe
- Department of Ecology & Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA
| | - Jewelna Akorli
- Department of Parasitology, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana
| | - Sampson Otoo
- Department of Parasitology, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana
| | - John-Paul Mutebi
- Centers for Disease Control and Prevention, Fort Collins, CO 80521, USA
| | - Alexis L Kriete
- Department of Ecology & Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA; Princeton Neuroscience Institute, Princeton University, Princeton, NJ 08544, USA
| | - Eliza G Ewing
- Department of Ecology & Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA
| | - Rosemary Sang
- Arbovirus/Viral Hemorrhagic Fevers Laboratory, Center for Virus Research, Kenya Medical Research Institute (KEMRI), Nairobi, Kenya
| | - Andrea Gloria-Soria
- Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06511, USA
| | - Jeffrey R Powell
- Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06511, USA
| | - Rachel E Baker
- Princeton Environmental Institute, Princeton University, Princeton, NJ 08544, USA
| | - Bradley J White
- Verily Life Sciences, 259 East Grand Avenue, South San Francisco, CA 94080, USA
| | - Jacob E Crawford
- Verily Life Sciences, 259 East Grand Avenue, South San Francisco, CA 94080, USA
| | - Carolyn S McBride
- Department of Ecology & Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA; Princeton Neuroscience Institute, Princeton University, Princeton, NJ 08544, USA.
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Kadoić Balaško M, Mikac KM, Bažok R, Lemic D. Modern Techniques in Colorado Potato Beetle ( Leptinotarsa decemlineata Say) Control and Resistance Management: History Review and Future Perspectives. INSECTS 2020; 11:insects11090581. [PMID: 32882790 PMCID: PMC7563253 DOI: 10.3390/insects11090581] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Revised: 08/20/2020] [Accepted: 08/22/2020] [Indexed: 01/04/2023]
Abstract
Simple Summary The Colorado potato beetle (CPB) is one of the most important potato pest worldwide. It is native to U.S. but during the 20th century it has dispersed through Europe, Asia and western China. It continues to expand in an east and southeast direction. Damages are caused by larvae and adults. Their feeding on potato plant leaves can cause complete defoliation and lead to a large yield loss. After the long period of using only chemical control measures, the emergence of resistance increased and some new and different methods come to the fore. The main focus of this review is on new approaches to the old CPB control problem. We describe the use of Bacillus thuringiensis and RNA interference (RNAi) as possible solutions for the future in CPB management. RNAi has proven successful in controlling many pests and shows great potential for CPB control. Better understanding of the mechanisms that affect efficiency will enable the development of this technology and boost potential of RNAi to become part of integrated plant protection in the future. We described also the possibility of using single nucleotide polymorphisms (SNPs) as a way to go deeper into our understanding of resistance and how it influences genotypes. Abstract Colorado potato beetle, CPB (Leptinotarsa decemlineata Say), is one of the most important pests of the potato globally. Larvae and adults can cause complete defoliation of potato plant leaves and can lead to a large yield loss. The insect has been successfully suppressed by insecticides; however, over time, has developed resistance to insecticides from various chemical groups, and its once successful control has diminished. The number of available active chemical control substances is decreasing with the process of testing, and registering new products on the market are time-consuming and expensive, with the possibility of resistance ever present. All of these concerns have led to the search for new methods to control CPB and efficient tools to assist with the detection of resistant variants and monitoring of resistant populations. Current strategies that may aid in slowing resistance include gene silencing by RNA interference (RNAi). RNAi, besides providing an efficient tool for gene functional studies, represents a safe, efficient, and eco-friendly strategy for CPB control. Genetically modified (GM) crops that produce the toxins of Bacillus thuringiensis (Bt) have many advantages over agro-technical, mechanical, biological, and chemical measures. However, pest resistance that may occur and public acceptance of GM modified food crops are the main problems associated with Bt crops. Recent developments in the speed, cost, and accuracy of next generation sequencing are revolutionizing the discovery of single nucleotide polymorphisms (SNPs) and field of population genomics. There is a need for effective resistance monitoring programs that are capable of the early detection of resistance and successful implementation of integrated resistance management (IRM). The main focus of this review is on new technologies for CPB control (RNAi) and tools (SNPs) for detection of resistant CPB populations.
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Affiliation(s)
- Martina Kadoić Balaško
- Department of Agricultural Zoology, Faculty of Agriculture, University of Zagreb, Svetošimunska 25, 10000 Zagreb, Croatia; (R.B.); (D.L.)
- Correspondence: ; Tel.: +385-1-239-3654
| | - Katarina M. Mikac
- Centre for Sustainable Ecosystem Solutions, School of Earth, Atmospheric and Life Sciences, Faculty of Science, Medicine and Health, University of Wollongong, Wollongong 2522, Australia;
| | - Renata Bažok
- Department of Agricultural Zoology, Faculty of Agriculture, University of Zagreb, Svetošimunska 25, 10000 Zagreb, Croatia; (R.B.); (D.L.)
| | - Darija Lemic
- Department of Agricultural Zoology, Faculty of Agriculture, University of Zagreb, Svetošimunska 25, 10000 Zagreb, Croatia; (R.B.); (D.L.)
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Xia S, Cosme LV, Lutomiah J, Sang R, Ngangue MF, Rahola N, Ayala D, Powell JR. Genetic structure of the mosquito Aedes aegypti in local forest and domestic habitats in Gabon and Kenya. Parasit Vectors 2020; 13:417. [PMID: 32791977 PMCID: PMC7427282 DOI: 10.1186/s13071-020-04278-w] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2020] [Accepted: 08/03/2020] [Indexed: 12/14/2022] Open
Abstract
Background The mosquito Aedes aegypti is a devastating disease vector transmitting several important human arboviral diseases. In its native range in Africa, the mosquito can be found in both the ancestral forest habitat and anthropogenic habitats such as villages. How do the different habitats impact the population genetic structure of the local mosquito populations? Methods To address this question, we simultaneously sampled Ae. aegypti from the forest and local villages in La Lopé, Gabon and Rabai, Kenya. The mosquitoes were genotyped at 12 microsatellite loci and a panel of ~25,000 single nucleotide polymorphisms (SNPs), which allowed us to estimate their genetic ancestries and the population genetic structure related to habitats and sampling sites. Results In the context of the global population genetic structure of Ae. aegypti, clustering analysis showed that mosquitoes from the same locality (La Lopé or Rabai) have similar genetic ancestry, regardless of their habitats. Further analysis at the local scale also found no strong genetic differentiation between the forest and village mosquitoes in both La Lopé and Rabai. Interestingly, these results from our 2017 samples from Rabai, Kenya contrast to the documentation of genetic differentiation between village and forest mosquito collections from 1975–1976 and 2009. Between-habitat measures of genetic difference (Fst) vary across the genome, with a peak of high divergence observed at the third chromosome only in the La Lopé populations. Conclusion Collectively, these results demonstrated that there is little genetic isolation between forest and village habitats, which suggests possible extensive gene flow between them. From an epidemiological perspective, the forest habitat could act as a refuge for mosquitoes against vector control programmes in the domestic settings. Moreover, sylvatic populations could play a role in zoonotic pathogen transferred to humans. Therefore, future studies on disease transmission and vector control planning in the study area should take natural populations into consideration.![]()
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Affiliation(s)
- Siyang Xia
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, USA.
| | - Luciano V Cosme
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, USA
| | - Joel Lutomiah
- Arbovirus/Viral Hemorrhagic Fever Laboratory, Center for Virus Research, Kenya Medical Research Institute (KEMRI), Nairobi, Kenya
| | - Rosemary Sang
- Arbovirus/Viral Hemorrhagic Fever Laboratory, Center for Virus Research, Kenya Medical Research Institute (KEMRI), Nairobi, Kenya
| | | | - Nil Rahola
- CIRMF, Franceville, Gabon.,MIVEGEC, IRD, CNRS, Univ. Montpellier, Montpellier, France
| | - Diego Ayala
- CIRMF, Franceville, Gabon.,MIVEGEC, IRD, CNRS, Univ. Montpellier, Montpellier, France
| | - Jeffrey R Powell
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, USA
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Fernando HSD, Hapugoda M, Perera R, Black IV WC, De Silva BGDNK. Mitochondrial metabolic genes provide phylogeographic relationships of global collections of Aedes aegypti (Diptera: Culicidae). PLoS One 2020; 15:e0235430. [PMID: 32722672 PMCID: PMC7386613 DOI: 10.1371/journal.pone.0235430] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Accepted: 06/15/2020] [Indexed: 12/17/2022] Open
Abstract
Phylogeographic relationships among global collections of the mosquito Aedes aegypti were evaluated using the mitochondrial Cytochrome C Oxidase 1 (CO1) and NADH dehydrogenase subunit 4 (ND4) genes including new sequences from Sri Lanka. Phylogeographic analysis estimated that Ae. aegypti arose as a species ~614 thousand years ago (kya) in the late Pleistocene. At 545 kya an “early” East African clade arose that continued to differentiate in East Africa, and eventually gave rise to three lineages one of which is distributed throughout all tropical and subtropical regions, a second that contains Southeast Asian/Sri Lankan mosquitoes and a third that contains mostly New World mosquitoes. West African collections were not represented in this early clade. The late clade continued to differentiate throughout Africa and gave rise to a lineage that spread globally. The most recent branches of the late clade are represented by South-East Asia and India/Pakistan collections. Analysis of migration rates suggests abundant gene flow between India/Pakistan and the rest of the world with the exception of Africa.
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Affiliation(s)
- H. S. D. Fernando
- Department of Zoology, Center for Biotechnology, University of Sri Jayewardenepura, Nugegoda, Sri Lanka
| | - Menaka Hapugoda
- Molecular Medicine Unit, Faculty of Medicine, University of Kelaniya, Kelaniya, Sri Lanka
| | - Rushika Perera
- Department of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, Colorado, United States of America
| | - William C. Black IV
- Department of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, Colorado, United States of America
| | - B. G. D. N. K. De Silva
- Department of Zoology, Center for Biotechnology, University of Sri Jayewardenepura, Nugegoda, Sri Lanka
- * E-mail:
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Olson MF, Ndeffo-Mbah ML, Juarez JG, Garcia-Luna S, Martin E, Borucki MK, Frank M, Estrada-Franco JG, Rodríguez-Pérez MA, Fernández-Santos NA, Molina-Gamboa GDJ, Carmona Aguirre SD, Reyes-Berrones BDL, Cortés-De la cruz LJ, García-Barrientos A, Huidobro-Guevara RE, Brussolo-Ceballos RM, Ramirez J, Salazar A, Chaves LF, Badillo-Vargas IE, Hamer GL. High Rate of Non-Human Feeding by Aedes aegypti Reduces Zika Virus Transmission in South Texas. Viruses 2020; 12:E453. [PMID: 32316394 PMCID: PMC7232486 DOI: 10.3390/v12040453] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2020] [Revised: 04/13/2020] [Accepted: 04/14/2020] [Indexed: 12/21/2022] Open
Abstract
Mosquito-borne viruses are emerging or re-emerging globally, afflicting millions of people around the world. Aedes aegypti, the yellow fever mosquito, is the principal vector of dengue, Zika, and chikungunya viruses, and has well-established populations across tropical and subtropical urban areas of the Americas, including the southern United States. While intense arboviral epidemics have occurred in Mexico and further south in the Americas, local transmission in the United States has been minimal. Here, we study Ae. aegypti and Culex quinquefasciatus host feeding patterns and vertebrate host communities in residential environments of South Texas to identify host-utilization relative to availability. Only 31% of Ae. aegypti blood meals were derived from humans, while 50% were from dogs and 19% from other wild and domestic animals. In Cx. quinquefasciatus, 67% of blood meals were derived from chicken, 22% came from dogs, 9% from various wild avian species, and 2% from other mammals including one human, one cat, and one pig. We developed a model for the reproductive number, R0, for Zika virus (ZIKV) in South Texas relative to northern Mexico using human disease data from Tamaulipas, Mexico. We show that ZIKV R0 in South Texas communities could be greater than one if the risk of human exposure to Ae. aegypti bites in these communities is at least 60% that of Northern Mexico communities. The high utilization of non-human vertebrates and low risk of human exposure in South Texas diminishes the outbreak potential for human-amplified urban arboviruses transmitted by Ae. aegypti.
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Affiliation(s)
- Mark F. Olson
- Department of Entomology, Texas A&M University, College Station, TX 77843, USA; (M.F.O.); (J.G.J.); (S.G.-L.); (E.M.); (I.E.B.-V.)
| | - Martial L. Ndeffo-Mbah
- Veterinary Integrative Biosciences, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843, USA;
| | - Jose G. Juarez
- Department of Entomology, Texas A&M University, College Station, TX 77843, USA; (M.F.O.); (J.G.J.); (S.G.-L.); (E.M.); (I.E.B.-V.)
| | - Selene Garcia-Luna
- Department of Entomology, Texas A&M University, College Station, TX 77843, USA; (M.F.O.); (J.G.J.); (S.G.-L.); (E.M.); (I.E.B.-V.)
| | - Estelle Martin
- Department of Entomology, Texas A&M University, College Station, TX 77843, USA; (M.F.O.); (J.G.J.); (S.G.-L.); (E.M.); (I.E.B.-V.)
| | - Monica K. Borucki
- Biosciences and Biotechnology Division, Chemistry, Materials and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA; (M.K.B.); (M.F.)
| | - Matthias Frank
- Biosciences and Biotechnology Division, Chemistry, Materials and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA; (M.K.B.); (M.F.)
| | - José Guillermo Estrada-Franco
- Instituto Politécnico Nacional, Centro de Biotecnología Genómica, Cd. Reynosa 88710, Tamaulipas, Mexico; (J.G.E.-F.); (M.A.R.-P.); (N.A.F.-S.)
| | - Mario A. Rodríguez-Pérez
- Instituto Politécnico Nacional, Centro de Biotecnología Genómica, Cd. Reynosa 88710, Tamaulipas, Mexico; (J.G.E.-F.); (M.A.R.-P.); (N.A.F.-S.)
| | - Nadia A. Fernández-Santos
- Instituto Politécnico Nacional, Centro de Biotecnología Genómica, Cd. Reynosa 88710, Tamaulipas, Mexico; (J.G.E.-F.); (M.A.R.-P.); (N.A.F.-S.)
| | - Gloria de Jesús Molina-Gamboa
- Secretary of Health of the State of Tamaulipas, Epidemiology Directorate, Cd. Victoria 87000, Tamaulipas, Mexico; (G.d.J.M.-G.); (S.D.C.A.); (B.d.L.R.-B.); (L.J.C.-D.l.c.); (A.G.-B.); (R.E.H.-G.); (R.M.B.-C.)
| | - Santos Daniel Carmona Aguirre
- Secretary of Health of the State of Tamaulipas, Epidemiology Directorate, Cd. Victoria 87000, Tamaulipas, Mexico; (G.d.J.M.-G.); (S.D.C.A.); (B.d.L.R.-B.); (L.J.C.-D.l.c.); (A.G.-B.); (R.E.H.-G.); (R.M.B.-C.)
| | - Bernardita de Lourdes Reyes-Berrones
- Secretary of Health of the State of Tamaulipas, Epidemiology Directorate, Cd. Victoria 87000, Tamaulipas, Mexico; (G.d.J.M.-G.); (S.D.C.A.); (B.d.L.R.-B.); (L.J.C.-D.l.c.); (A.G.-B.); (R.E.H.-G.); (R.M.B.-C.)
| | - Luis Javier Cortés-De la cruz
- Secretary of Health of the State of Tamaulipas, Epidemiology Directorate, Cd. Victoria 87000, Tamaulipas, Mexico; (G.d.J.M.-G.); (S.D.C.A.); (B.d.L.R.-B.); (L.J.C.-D.l.c.); (A.G.-B.); (R.E.H.-G.); (R.M.B.-C.)
| | - Alejandro García-Barrientos
- Secretary of Health of the State of Tamaulipas, Epidemiology Directorate, Cd. Victoria 87000, Tamaulipas, Mexico; (G.d.J.M.-G.); (S.D.C.A.); (B.d.L.R.-B.); (L.J.C.-D.l.c.); (A.G.-B.); (R.E.H.-G.); (R.M.B.-C.)
| | - Raúl E. Huidobro-Guevara
- Secretary of Health of the State of Tamaulipas, Epidemiology Directorate, Cd. Victoria 87000, Tamaulipas, Mexico; (G.d.J.M.-G.); (S.D.C.A.); (B.d.L.R.-B.); (L.J.C.-D.l.c.); (A.G.-B.); (R.E.H.-G.); (R.M.B.-C.)
| | - Regina M. Brussolo-Ceballos
- Secretary of Health of the State of Tamaulipas, Epidemiology Directorate, Cd. Victoria 87000, Tamaulipas, Mexico; (G.d.J.M.-G.); (S.D.C.A.); (B.d.L.R.-B.); (L.J.C.-D.l.c.); (A.G.-B.); (R.E.H.-G.); (R.M.B.-C.)
| | - Josue Ramirez
- Health Department, City of Harlingen, TX 78550, USA;
| | - Aaron Salazar
- Hidalgo County Health & Human Services, Edinburg, TX 78539, USA;
| | - Luis F. Chaves
- Instituto Costarricense de Investigación y Enseñanza en Nutrición y Salud (INCIENSA), Apartado Postal, Tres Ríos, Cartago 4-2250, Costa Rica;
| | - Ismael E. Badillo-Vargas
- Department of Entomology, Texas A&M University, College Station, TX 77843, USA; (M.F.O.); (J.G.J.); (S.G.-L.); (E.M.); (I.E.B.-V.)
| | - Gabriel L. Hamer
- Department of Entomology, Texas A&M University, College Station, TX 77843, USA; (M.F.O.); (J.G.J.); (S.G.-L.); (E.M.); (I.E.B.-V.)
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Bayega A, Djambazian H, Tsoumani KT, Gregoriou ME, Sagri E, Drosopoulou E, Mavragani-Tsipidou P, Giorda K, Tsiamis G, Bourtzis K, Oikonomopoulos S, Dewar K, Church DM, Papanicolaou A, Mathiopoulos KD, Ragoussis J. De novo assembly of the olive fruit fly (Bactrocera oleae) genome with linked-reads and long-read technologies minimizes gaps and provides exceptional Y chromosome assembly. BMC Genomics 2020; 21:259. [PMID: 32228451 PMCID: PMC7106766 DOI: 10.1186/s12864-020-6672-3] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2019] [Accepted: 03/13/2020] [Indexed: 12/24/2022] Open
Abstract
BACKGROUND The olive fruit fly, Bactrocera oleae, is the most important pest in the olive fruit agribusiness industry. This is because female flies lay their eggs in the unripe fruits and upon hatching the larvae feed on the fruits thus destroying them. The lack of a high-quality genome and other genomic and transcriptomic data has hindered progress in understanding the fly's biology and proposing alternative control methods to pesticide use. RESULTS Genomic DNA was sequenced from male and female Demokritos strain flies, maintained in the laboratory for over 45 years. We used short-, mate-pair-, and long-read sequencing technologies to generate a combined male-female genome assembly (GenBank accession GCA_001188975.2). Genomic DNA sequencing from male insects using 10x Genomics linked-reads technology followed by mate-pair and long-read scaffolding and gap-closing generated a highly contiguous 489 Mb genome with a scaffold N50 of 4.69 Mb and L50 of 30 scaffolds (GenBank accession GCA_001188975.4). RNA-seq data generated from 12 tissues and/or developmental stages allowed for genome annotation. Short reads from both males and females and the chromosome quotient method enabled identification of Y-chromosome scaffolds which were extensively validated by PCR. CONCLUSIONS The high-quality genome generated represents a critical tool in olive fruit fly research. We provide an extensive RNA-seq data set, and genome annotation, critical towards gaining an insight into the biology of the olive fruit fly. In addition, elucidation of Y-chromosome sequences will advance our understanding of the Y-chromosome's organization, function and evolution and is poised to provide avenues for sterile insect technique approaches.
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Affiliation(s)
- Anthony Bayega
- McGill University and Genome Quebec Innovation Centre, Department of Human Genetics, McGill University, Montreal, Canada
| | - Haig Djambazian
- McGill University and Genome Quebec Innovation Centre, Department of Human Genetics, McGill University, Montreal, Canada
| | - Konstantina T. Tsoumani
- Department of Biochemistry and Biotechnology, University of Thessaly, Biopolis, 41500 Larissa, Greece
| | - Maria-Eleni Gregoriou
- Department of Biochemistry and Biotechnology, University of Thessaly, Biopolis, 41500 Larissa, Greece
| | - Efthimia Sagri
- Department of Biochemistry and Biotechnology, University of Thessaly, Biopolis, 41500 Larissa, Greece
| | - Eleni Drosopoulou
- Department of Biology, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | | | - Kristina Giorda
- Integrated DNA Technologies, Inc., 1710 Commercial Park, Coralville, Iowa, 52241 USA
| | - George Tsiamis
- Department of Environmental Engineering, University of Patras, Agrinio, Greece
| | - Kostas Bourtzis
- Insect Pest Control Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Vienna, Austria
| | - Spyridon Oikonomopoulos
- McGill University and Genome Quebec Innovation Centre, Department of Human Genetics, McGill University, Montreal, Canada
| | - Ken Dewar
- McGill University and Genome Quebec Innovation Centre, Department of Human Genetics, McGill University, Montreal, Canada
| | - Deanna M. Church
- Inscripta, Inc., 5500 Central Avenue #220, Boulder, CO 80301 USA
| | - Alexie Papanicolaou
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, NSW 2753 Australia
| | - Kostas D. Mathiopoulos
- Department of Biochemistry and Biotechnology, University of Thessaly, Biopolis, 41500 Larissa, Greece
| | - Jiannis Ragoussis
- McGill University and Genome Quebec Innovation Centre, Department of Human Genetics, McGill University, Montreal, Canada
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Pest Management Challenges and Control Practices in Codling Moth: A Review. INSECTS 2020; 11:insects11010038. [PMID: 31947812 PMCID: PMC7023282 DOI: 10.3390/insects11010038] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Revised: 12/30/2019] [Accepted: 12/31/2019] [Indexed: 01/29/2023]
Abstract
The codling moth, Cydia pomonella L., is a serious insect pest in pome fruit production worldwide with a preference for apple. The pest is known for having developed resistance to several chemical groups of insecticides, making its control difficult. The control and management of the codling moth is often hindered by a lack of understanding about its biology and ecology, including aspects of its population genetics. This review summarizes the information about the origin and biology of the codling moth, describes the mechanisms of resistance in this pest, and provides an overview of current research of resistant pest populations and genetic research both in Europe and globally. The main focus of this review is on non-pesticide control measures and anti-resistance strategies which help to reduce the number of chemical pesticides used and their residues on food and the local environment. Regular monitoring for insecticide resistance is essential for proactive management to mitigate potential insecticide resistance. Here we describe techniques for the detection of resistant variants and possibilities for monitoring resistance populations. Also, we present our present work on developing new methods to maintain effective control using appropriate integrated resistance management (IRM) strategies for this economically important perennial pest.
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43
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Gloria-Soria A, Soghigian J, Kellner D, Powell JR. Genetic diversity of laboratory strains and implications for research: The case of Aedes aegypti. PLoS Negl Trop Dis 2019; 13:e0007930. [PMID: 31815934 PMCID: PMC6922456 DOI: 10.1371/journal.pntd.0007930] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2019] [Revised: 12/19/2019] [Accepted: 11/17/2019] [Indexed: 12/29/2022] Open
Abstract
The yellow fever mosquito (Aedes aegypti), is the primary vector of dengue, Zika, and chikungunya fever, among other arboviral diseases. It is also a popular laboratory model in vector biology due to its ease of rearing and manipulation in the lab. Established laboratory strains have been used worldwide in thousands of studies for decades. Laboratory evolution of reference strains and contamination among strains are potential severe problems that could dramatically change experimental outcomes and thus is a concern in vector biology. We analyzed laboratory and field colonies of Ae. aegypti and an Ae. aegypti-derived cell line (Aag2) using 12 microsatellites and ~20,000 SNPs to determine the extent of divergence among laboratory strains and relationships to their wild relatives. We found that 1) laboratory populations are less genetically variable than their field counterparts; 2) colonies bearing the same name obtained from different laboratories may be highly divergent; 3) present genetic composition of the LVP strain used as the genome reference is incompatible with its presumed origin; 4) we document changes in two wild caught colonies over ~16 generations of colonization; and 5) the Aag2 Ae. aegypti cell line has experienced minimal genetic changes within and across laboratories. These results illustrate the degree of variability within and among strains of Ae. aegypti, with implications for cross-study comparisons, and highlight the need of a common mosquito repository and the implementation of strain validation tools.
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Affiliation(s)
- Andrea Gloria-Soria
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, United States of America
| | - John Soghigian
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, United States of America
| | - David Kellner
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, United States of America
| | - Jeffrey R. Powell
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, United States of America
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44
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Salgueiro P, Serrano C, Gomes B, Alves J, Sousa CA, Abecasis A, Pinto J. Phylogeography and invasion history of Aedes aegypti, the Dengue and Zika mosquito vector in Cape Verde islands (West Africa). Evol Appl 2019; 12:1797-1811. [PMID: 31548858 PMCID: PMC6752157 DOI: 10.1111/eva.12834] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Revised: 05/14/2019] [Accepted: 06/01/2019] [Indexed: 12/25/2022] Open
Abstract
Aedes-borne arboviruses have spread globally with outbreaks of vast impact on human populations and health systems. The West African archipelago of Cape Verde had its first outbreak of Dengue in 2009, at the time the largest recorded in Africa, and was one of the few African countries affected by the Zika virus epidemic. Aedes aegypti was the mosquito vector involved in both outbreaks. We performed a phylogeographic and population genetics study of A. aegypti in Cape Verde in order to infer the geographic origin and evolutionary history of this mosquito. These results are discussed with respect to the implications for vector control and prevention of future outbreaks. Mosquitoes captured before and after the Dengue outbreak on the islands of Santiago, Brava, and Fogo were analyzed with two mitochondrial genes COI and ND4, 14 microsatellite loci and five kdr mutations. Genetic variability was comparable to other African populations. Our results suggest that A. aegypti invaded Cape Verde at the beginning of the Holocene from West Africa. Given the historic importance of Cape Verde in the transatlantic trade of the 16th-17th centuries, a possible contribution to the genetic pool of the founding populations in the New World cannot be fully discarded. However, contemporary gene flow with the Americas is likely to be infrequent. No kdr mutations associated with pyrethroid resistance were detected. The implications for vector control and prevention of future outbreaks are discussed.
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Affiliation(s)
- Patrícia Salgueiro
- Global Health and Tropical Medicine (GHTM), Instituto de Higiene e Medicina Tropical (IHMT)Universidade Nova de Lisboa (UNL)LisboaPortugal
| | - Célia Serrano
- Global Health and Tropical Medicine (GHTM), Instituto de Higiene e Medicina Tropical (IHMT)Universidade Nova de Lisboa (UNL)LisboaPortugal
| | - Bruno Gomes
- Global Health and Tropical Medicine (GHTM), Instituto de Higiene e Medicina Tropical (IHMT)Universidade Nova de Lisboa (UNL)LisboaPortugal
- Oswaldo Cruz Institute (IOC)Fundação Oswaldo Cruz (FIOCRUZ)Rio de JaneiroBrasil
| | - Joana Alves
- Direção Geral de Saúde/Instituto Nacional de Saúde Pública, Ministério da Saúde de Cabo VerdePraiaCabo Verde
| | - Carla A. Sousa
- Global Health and Tropical Medicine (GHTM), Instituto de Higiene e Medicina Tropical (IHMT)Universidade Nova de Lisboa (UNL)LisboaPortugal
| | - Ana Abecasis
- Global Health and Tropical Medicine (GHTM), Instituto de Higiene e Medicina Tropical (IHMT)Universidade Nova de Lisboa (UNL)LisboaPortugal
| | - João Pinto
- Global Health and Tropical Medicine (GHTM), Instituto de Higiene e Medicina Tropical (IHMT)Universidade Nova de Lisboa (UNL)LisboaPortugal
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