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Shao Q, Luo T, Zhang C, Zhu K, Zhang S, Luo G. Enhanced anaerobic phenol degradation: Critical roles of glucose and hydrochar on microbial traits. BIORESOURCE TECHNOLOGY 2025; 429:132490. [PMID: 40204029 DOI: 10.1016/j.biortech.2025.132490] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2025] [Revised: 03/24/2025] [Accepted: 04/04/2025] [Indexed: 04/11/2025]
Abstract
Phenolic wastewater poses a significant environmental threat due to its toxicity and persistence. This study examined the effects of hydrochar and easily degradable organic wastewater (using glucose as a model compound) on enhancing anaerobic digestion. Their combined application reduced degradation time from 90 days (control) to 30-78 days. Optimal glucose concentrations (1-2 g/L) minimized the lag phase, while higher concentrations (4 g/L) hindered degradation due to acid inhibition. Hydrochar mitigated this by promoting volatile fatty acid conversion. It also enriched key functional microorganisms, stimulated functional gene expression, and strengthened synergistic interactions between phenol-degrading bacteria associated with direct interspecies electron transfer, such as Syntrophomonas, Anaerocella, and Syntrophus, and other microbial groups. This study highlights the potential of hydrochar combined with easily degradable organic wastewater as a green and effective strategy for enhancing phenol degradation.
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Affiliation(s)
- Qianqi Shao
- Department of Environment Science and Engineering, Fudan University, Shanghai 200438, China; Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP3), Department of Environmental Science and Engineering, Fudan University, Shanghai 200433, China; Shanghai Technical Service Platform for Pollution Control and Resource Utilization of Organic Wastes, Shanghai 200438, China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China
| | - Tao Luo
- Department of Environment Science and Engineering, Fudan University, Shanghai 200438, China; Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP3), Department of Environmental Science and Engineering, Fudan University, Shanghai 200433, China; Shanghai Technical Service Platform for Pollution Control and Resource Utilization of Organic Wastes, Shanghai 200438, China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China
| | - Chao Zhang
- Department of Environment Science and Engineering, Fudan University, Shanghai 200438, China; Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP3), Department of Environmental Science and Engineering, Fudan University, Shanghai 200433, China; Shanghai Technical Service Platform for Pollution Control and Resource Utilization of Organic Wastes, Shanghai 200438, China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China
| | - Keliang Zhu
- Department of Environment Science and Engineering, Fudan University, Shanghai 200438, China; Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP3), Department of Environmental Science and Engineering, Fudan University, Shanghai 200433, China; Shanghai Technical Service Platform for Pollution Control and Resource Utilization of Organic Wastes, Shanghai 200438, China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China
| | - Shicheng Zhang
- Department of Environment Science and Engineering, Fudan University, Shanghai 200438, China; Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP3), Department of Environmental Science and Engineering, Fudan University, Shanghai 200433, China; Shanghai Technical Service Platform for Pollution Control and Resource Utilization of Organic Wastes, Shanghai 200438, China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China
| | - Gang Luo
- Department of Environment Science and Engineering, Fudan University, Shanghai 200438, China; Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP3), Department of Environmental Science and Engineering, Fudan University, Shanghai 200433, China; Shanghai Technical Service Platform for Pollution Control and Resource Utilization of Organic Wastes, Shanghai 200438, China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China.
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2
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Barsalote-Wei EM, Nichols D, Tegg RS, Eyles A, Wilson AJC, Wilson CR. Rhizosphere bacteria degrade a key root exudate metabolite critical for pathogen germination and root infection. J Appl Microbiol 2025; 136:lxaf090. [PMID: 40240295 DOI: 10.1093/jambio/lxaf090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2024] [Revised: 03/27/2025] [Accepted: 04/14/2025] [Indexed: 04/18/2025]
Abstract
AIMS Glutamine (Gln), present within potato root exudates, stimulates germination of resting spores and chemotactic attraction of zoospores of the plasmodiophorid pathogen, Spongospora subterranea. We hypothesized that rhizosphere bacteria could alter the rhizosphere metabolome by diminishing the occurrence of Gln with the eventual aim of reducing pathogen activation, attraction and infection. This study aimed to isolate and characterize bacteria capable of substantially degrading Gln within the potato rhizosphere. METHODS AND RESULTS Eleven bacteria were isolated from potato rhizosphere samples using Gln as a sole carbon source. Of these, Pantoea sp. (RR15) and Rhodococcus sp. (RR09) showed superior Gln degradation potential. Both isolates established within the potato rhizosphere and reduced Gln concentrations in situ. Further analysis of the rhizosphere metabolome showed significant treatment effects for a range of other organic compounds, including some known to stimulate or inhibit Spongospora subterranea germination and/or taxis. CONCLUSIONS We demonstrate that establishing selected bacteria in the rhizosphere of potatoes can successfully modify the root rhizosphere metabolome.
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Affiliation(s)
- Eda Marie Barsalote-Wei
- Tasmanian Institute of Agriculture, New Town Research Laboratories, University of Tasmania, 13 St. Johns Avenue, New Town, TAS 7008, Australia
| | - David Nichols
- Central Science Laboratory, University of Tasmania, Private Bag 74, Hobart, TAS 7001, Australia
| | - Robert Steven Tegg
- Tasmanian Institute of Agriculture, New Town Research Laboratories, University of Tasmania, 13 St. Johns Avenue, New Town, TAS 7008, Australia
| | - Alieta Eyles
- Tasmanian Institute of Agriculture, School of Agricultural Science, University of Tasmania, Private Bag 98, Hobart, TAS 7001, Australia
| | - Annabel Jun-Chn Wilson
- Tasmanian Institute of Agriculture, New Town Research Laboratories, University of Tasmania, 13 St. Johns Avenue, New Town, TAS 7008, Australia
| | - Calum Rae Wilson
- Tasmanian Institute of Agriculture, New Town Research Laboratories, University of Tasmania, 13 St. Johns Avenue, New Town, TAS 7008, Australia
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3
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Yannick Ngaba MJ, Rennenberg H, Hu B. Insights Into the Efficiency and Health Impacts of Emerging Microplastic Bioremediation Approaches. GLOBAL CHANGE BIOLOGY 2025; 31:e70226. [PMID: 40365679 DOI: 10.1111/gcb.70226] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2025] [Revised: 04/16/2025] [Accepted: 04/21/2025] [Indexed: 05/15/2025]
Abstract
The pollution caused by microplastics (MPs) is a global environmental and health concern. These plastic particles disrupt food chains and pose health risks to organisms, including humans. From a total of 827 studies, synthetic textiles (35%) and tires (28%) are the primary sources of MPs, with fibers being the most common shape (60%). MPs were detected in feces (44% of studies), lungs (35%), and blood (17%), indicating widespread contamination and potential health impacts. Bioremediation is a promising and sustainable method for mitigating MP pollution, as it uses microorganisms and plants to break down or convert MPs into less hazardous substances. However, it is important to understand and address the potential unintended consequences of bioremediation methods on the environment and human health. This scoping literature review examines the efficiency of currently emerging approaches for microplastic bioremediation, their strengths and weaknesses, and their potential impacts on the environment and human health. Highly effective methods such as mycoremediation, soil microbes for enhanced biodegradation, and phytoextraction were identified, but they pose high toxicity risks. Moderately effective methods include plant-assisted remediation, rhizosphere degradation, phytodegradation, and biodegradation, with effectiveness rates between 50% and 65% and moderate toxicity risks.
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Affiliation(s)
- Mbezele Junior Yannick Ngaba
- Center of Molecular Ecophysiology (CMEP), College of Resources and Environment, Southwest University, Chongqing, People's Republic of China
- Higher Technical Teacher' Training College of Ebolowa, University of Ebolowa (HTTTC), Ebolowa, Cameroon
| | - Heinz Rennenberg
- Center of Molecular Ecophysiology (CMEP), College of Resources and Environment, Southwest University, Chongqing, People's Republic of China
| | - Bin Hu
- Center of Molecular Ecophysiology (CMEP), College of Resources and Environment, Southwest University, Chongqing, People's Republic of China
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Kiruthika K, Suganthi A, Johnson Thangaraj Edward YS, Anandham R, Renukadevi P, Murugan M, Bimal Kumar Sahoo, Mohammad Ikram, Kavitha PG, Jayakanthan M. Role of Lactic Acid Bacteria in Insecticide Residue Degradation. Probiotics Antimicrob Proteins 2025; 17:81-102. [PMID: 38819541 DOI: 10.1007/s12602-024-10298-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/21/2024] [Indexed: 06/01/2024]
Abstract
Lactic acid bacteria are gaining global attention, especially due to their role as a probiotic. They are increasingly being used as a flavoring agent and food preservative. Besides their role in food processing, lactic acid bacteria also have a significant role in degrading insecticide residues in the environment. This review paper highlights the importance of lactic acid bacteria in degrading insecticide residues of various types, such as organochlorines, organophosphorus, synthetic pyrethroids, neonicotinoids, and diamides. The paper discusses the mechanisms employed by lactic acid bacteria to degrade these insecticides, as well as their potential applications in bioremediation. The key enzymes produced by lactic acid bacteria, such as phosphatase and esterase, play a vital role in breaking down insecticide molecules. Furthermore, the paper discusses the challenges and future directions in this field. However, more research is needed to optimize the utilization of lactic acid bacteria in insecticide residue degradation and to develop practical strategies for their implementation in real-world scenarios.
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Affiliation(s)
- K Kiruthika
- Department of Agricultural Entomology, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu, India
| | - A Suganthi
- Department of Agricultural Entomology, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu, India.
| | | | - R Anandham
- Department of Agricultural Microbiology, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu, India
| | - P Renukadevi
- Department of Plant Pathology, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu, India
| | - M Murugan
- Department of Agricultural Entomology, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu, India
| | - Bimal Kumar Sahoo
- Department of Agricultural Entomology, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu, India
| | - Mohammad Ikram
- Department of Agricultural Entomology, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu, India
| | - P G Kavitha
- Department of Nematology, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu, India
| | - M Jayakanthan
- Department of Bioinformatics, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu, India
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5
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Shu W, Zhang Q, Audet J, Hein T, Leng P, Hu M, Li Z, Cheng H, Chen G, Li F, Wu F. Baseflow and Coupled Nitrification-Denitrification Processes Jointly Dominate Nitrate Dynamics in a Watershed Impacted by Rare Earth Mining. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2025; 59:719-729. [PMID: 39680095 DOI: 10.1021/acs.est.4c05909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2024]
Abstract
Mining activities cause severe nitrogen pollution in watersheds, yet our understanding of the transport pathways, transformation processes, and control mechanisms of nitrate (NO3-) in these areas is limited. Based on nearly 4-year observations of groundwater and river in China's largest ion-adsorption rare earth mining watershed, we revealed the dynamics of NO3- and its drivers using stoichiometry-based load model, molecular biological, and multi-isotope approaches. Results indicated that the NO3- dynamics were jointly controlled by sources (precipitation, terrestrial inputs, and sediment supply) and processes (hydrological and biological). The monthly NO3- export load from the 444.4 km2 watershed was 3.72 × 105 kg. Groundwater (36 ± 26%) and soil nitrogen (25 ± 17%) were the primary exogenous sources of NO3-. Baseflow was the main hydrological pathway for legacy nitrogen into the river, contributing 66.8% of the NO3- load. Coupled nitrification-denitrification were key biological processes affecting the NO3- transformation, with denitrification contributing 58%. Burkholderia were most associated with NO3- transformation. Dissolved organic carbon and oxygen were major drivers affecting the NO3- production and consumption. This study highlights effective control and management strategies for nitrogen pollution in mining-affected watersheds, considering not only reducing nitrogen inputs but also integrating hydrological pathways and nitrogen transformation mechanisms.
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Affiliation(s)
- Wang Shu
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, 100012Beijing, China
- Shandong Yucheng Agro-Ecosystem National Observation and Research Station, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, 100101 Beijing, China
- Sino-Danish College of University of Chinese Academy of Sciences, 101408 Beijing, China
- Sino-Danish Centre for Education and Research, 101408Beijing, China
- Institute of Hydrobiology and Aquatic Ecosystem Management, BOKU University, 1180 Vienna, Austria
| | - Qiuying Zhang
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, 100012Beijing, China
| | - Joachim Audet
- Department of Ecoscience, Aarhus University, C.F. Møllers Allé, 8000 Aarhus, Denmark
| | - Thomas Hein
- Institute of Hydrobiology and Aquatic Ecosystem Management, BOKU University, 1180 Vienna, Austria
| | - Peifang Leng
- Shandong Yucheng Agro-Ecosystem National Observation and Research Station, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, 100101 Beijing, China
| | - Mei Hu
- Jiangxi Province Ecological Environmental Monitoring Centre, 330039Nanchang, China
| | - Zhao Li
- Shandong Yucheng Agro-Ecosystem National Observation and Research Station, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, 100101 Beijing, China
| | - Hefa Cheng
- MOE Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, 100871Beijing, China
| | - Gang Chen
- Department of Civil and Environmental Engineering, Florida A&M University (FAMU)-Florida State University (FSU) Joint College of Engineering, Tallahassee, Florida 32310, United States
| | - Fadong Li
- Shandong Yucheng Agro-Ecosystem National Observation and Research Station, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, 100101 Beijing, China
- Sino-Danish College of University of Chinese Academy of Sciences, 101408 Beijing, China
| | - Fengchang Wu
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, 100012Beijing, China
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Chetverikov S, Hkudaigulov G, Sharipov D, Starikov S. Probable New Species of Bacteria of the Genus Pseudomonas Accelerates and Enhances the Destruction of Perfluorocarboxylic Acids. TOXICS 2024; 12:930. [PMID: 39771145 PMCID: PMC11728705 DOI: 10.3390/toxics12120930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2024] [Revised: 12/13/2024] [Accepted: 12/19/2024] [Indexed: 01/16/2025]
Abstract
Bacteria of the genus Pseudomonas are the most studied microorganisms that biodegrade persistent perfluoroorganic pollutants, and the research of their application for the remediation of environmental sites using biotechnological approaches remains relevant. The aim of this study was to investigate the ability of a known destructor of perfluorooctane sulfonic acid from the genus Pseudomonas to accelerate and enhance the destruction of long-chain perfluorocarboxylic acids (PFCAs), specifically perfluorooctanoic acid and perfluorononanoic acid, in water and soil in association with the strain P. mosselii 5(3), which has previously confirmed genetic potential for the degrading of PFCAs. The complete genome (5.86 million base pairs) of the strain 2,4-D, probably belonging to a new species of Pseudomonas, was sequenced, assembled, and analyzed. The genomes of both strains contain genes involved in the defluorination of fluorinated compounds, including haloacetate dehalogenase H-1 (dehH1) and haloalkane dehalogenase (dhaA). The strain 2,4-D also has a multicomponent enzyme system consisting of a dioxygenase component, an electron carrier, and 2-halobenzoate 1,2-dioxygenase (CbdA) with a preference for fluorides. The strain 2,4-D was able to defluorinate PFCAs in an aqueous cultivation system within 7 days, using them as the sole source of carbon and energy and converting them to perfluorheptanoic acid. It assisted strain 5(3) to convert PFCAs to perfluoropentanoic acid, accelerating the process by 24 h. In a model experiment for the bioaugmentation of microorganisms in artificially contaminated soil, the degradation of PFCAs by the association of pseudomonads also occurred faster and deeper than by the individual strains, achieving a degree of biodestruction of 75% over 60 days, with the perfluoropentanoic acid as the main metabolite. These results are of great importance for the development of methods for the biological recultivation of fluorinated organic pollutants for environmental protection and for understanding the fundamental mechanisms of bacterial interactions with these compounds.
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Affiliation(s)
- Sergey Chetverikov
- Ufa Institute of Biology, Subdivision of the Ufa Federal Research Centre of the Russian Academy of Sciences, 450054 Ufa, Russia; (G.H.); (D.S.); (S.S.)
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Krucon T, Uhrynowski W, Piatkowska K, Styczynski M, Stasiuk R, Dziewit L, Drewniak L. Application of xylene-degrading bacteria in the treatment of soil contaminated with petroleum hydrocarbons - A comprehensive laboratory to pilot-scale analysis. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 957:177501. [PMID: 39536865 DOI: 10.1016/j.scitotenv.2024.177501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2024] [Revised: 09/20/2024] [Accepted: 11/08/2024] [Indexed: 11/16/2024]
Abstract
Petroleum hydrocarbons, including both aliphatic (gasoline, mineral oil) and aromatic compounds (BTEX), are known for their harmful effects on ecosystems and human health. Despite many studies, large-scale treatment of contaminated soils continues to be challenging, especially at lower temperatures. The use of metabolically-versatile, psychrotolerant, cold-active microorganisms, seems a promising, cost-effective and eco-friendly solution to boost remediation rates. In this study, a suitable microbial consortium was prepared and tested both in lab- and pilot-scale. To achieve the best bioremediation results, bacterial strains were isolated from BTEX-contaminated soil and then tested for the desired traits over a wide range of conditions. Of 5 preselected strains, 3 Pseudomonas strains capable of denitrification and aerobic/anaerobic degradation of hydrocarbons (up to 41.53±7.39 %), further characterized by a broad temperature (4-37 °C), pH (3-4 to 11) and salinity (0-8 %) tolerance, as well as resistance to freezing, were selected. Physiological studies were supported by genetic analyses, which indicated the presence of both alkB and xylM genes, and excluded similarity of the strains to the known opportunistic pathogens. To further confirm the applicability of the consortium, lab-scale analyses were followed by comprehensive pilot-scale tests on ~5 m3 biopile/biocell, at different conditions. The results revealed increased efficacy of the consortium in bioremediation, when compared to biostimulated indigenous strains, for volatile hydrocarbons (93 % vs 88 %) and mineral oil (23 % vs 15 %), as well as 175 % and 136 % acceleration of remediation for the respective compounds in terms of time needed to complete the process. Moreover, the high survivability and metabolic activity of the consortium at different temperatures indicate the possibility of its year-round use for bioremediation of soil contaminated with petroleum hydrocarbons. The study proves the potential of specialized bacteria in the removal of pollutants, and emphasizes the role of bio-based strategies in addressing complex environmental challenges and remediation of contaminated sites.
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Affiliation(s)
- Tomasz Krucon
- Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, 02-096 Warsaw, Poland
| | | | - Katarzyna Piatkowska
- Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, 02-096 Warsaw, Poland
| | - Michal Styczynski
- Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, 02-096 Warsaw, Poland
| | - Robert Stasiuk
- Department of Geomicrobiology, Institute of Microbiology, Faculty of Biology, University of Warsaw, 02-096 Warsaw, Poland
| | - Lukasz Dziewit
- Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, 02-096 Warsaw, Poland
| | - Lukasz Drewniak
- Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, 02-096 Warsaw, Poland; Department of Microbiology, Institute of Biology, Jan Kochanowski University, 25-406 Kielce, Poland.
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8
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Ouyang W, Huang Y, Li C, Huang W, Yuan S, Liu H. Control of dissolved H 2 concentration enhances electron generation, transport and TCE reduction by indigenous microbial community. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 955:177014. [PMID: 39423892 DOI: 10.1016/j.scitotenv.2024.177014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2024] [Revised: 10/14/2024] [Accepted: 10/15/2024] [Indexed: 10/21/2024]
Abstract
Electrokinetic enhanced bioremediation (EK-Bio) is practical for trichloroethene (TCE) dechlorination because the cathode can produce a wide range of dissolved H2 (DH) concentrations of 1.3-0 mg/L from the electrode to the aquifer. In this study, TCE dechlorination was investigated under different DH concentrations. The mechanisms were discussed by analyzing the microbial community structure and abundance of organohalide-respiring bacteria (OHRB) using 16S rRNA, and the gene abundances of key enzymes in the TCE electron transport chain using metagenomic analysis. The results showed that the moderate DH concentration of 0.19-0.53 mg/L exhibited the most pronounced TCE dechlorination, even better than the higher DH concentrations, due to the optimal redox environment, the enrichments of OHRB, reductive dehalogenase (rdhA) genes and key enzyme genes in the electron generation and transport chain. More electrons were obtained from H2 metabolism by Dehalobacter by promoting the formation of [NiFe] hydrogenase (HupS/L/C) or from glycolysis by versatile OHRB by stimulating the formation of formate and enriching formate dehydrogenase (FDH) under moderate DH conditions. In addition, the enhanced amino acid metabolism improved the vitamin K cycle for electron transport and enriched the reductive dechlorinating enzyme (RDase) genes. This study identifies the optimal DH concentration that facilitates bioremediation efficiency, provides insights into microbial community shifts and key enzymatic pathways in EK-Bio remediation.
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Affiliation(s)
- Weiwei Ouyang
- Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, School of Environmental Studies, China University of Geosciences, Wuhan, Hubei 430078, PR China
| | - Yao Huang
- Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, School of Environmental Studies, China University of Geosciences, Wuhan, Hubei 430078, PR China
| | - Cui Li
- Hubei Ecology Polytechnic College, Wuhan, Hubei 430200, PR China
| | - Wenyi Huang
- Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, School of Environmental Studies, China University of Geosciences, Wuhan, Hubei 430078, PR China
| | - Songhu Yuan
- Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, School of Environmental Studies, China University of Geosciences, Wuhan, Hubei 430078, PR China; State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, Hubei 430078, PR China
| | - Hui Liu
- Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, School of Environmental Studies, China University of Geosciences, Wuhan, Hubei 430078, PR China; State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, Hubei 430078, PR China.
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9
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Kishore S, Malik S, Shah MP, Bora J, Chaudhary V, Kumar L, Sayyed RZ, Ranjan A. A comprehensive review on removal of pollutants from wastewater through microbial nanobiotechnology -based solutions. Biotechnol Genet Eng Rev 2024; 40:3087-3112. [PMID: 35923085 DOI: 10.1080/02648725.2022.2106014] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Accepted: 07/15/2022] [Indexed: 11/02/2022]
Abstract
Increasing wastewater pollution owing to the briskly rising human population, rapid industrialization, and fast urbanization has necessitated highly efficient wastewater treatment technologies. Although several methods of wastewater treatments are in practice, expensiveness, use of noxious chemicals, generation of unsafe by-products, and longer time consumption restrain their use to a great extent. Over the last few decades, nanotechnological wastewater treatment approaches have received widespread recognition globally. Microbially fabricated nanoparticles reduce the utilization of reducing, capping, and stabilizing agents, and exhibit higher adsorptive and catalytic efficiency than chemically synthesized nanomaterials. The present review comprehensively summarizes the applications of microbial nanotechnology in the removal of a wide range of noxious wastewater pollutants. Moreover, prospects and challenges associated with the integration of nanotechnology with other biological treatment technologies including algal-membrane bioreactor, aerobic digestion, microbial fuel cells, and microbial nanofiber webs have also been briefly discussed.
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Affiliation(s)
- Shristi Kishore
- Amity Institute of Biotechnology, Amity University Jharkhand, Ranchi, India
| | - Sumira Malik
- Amity Institute of Biotechnology, Amity University Jharkhand, Ranchi, India
| | | | - Jutishna Bora
- Amity Institute of Biotechnology, Amity University Jharkhand, Ranchi, India
| | - Vishal Chaudhary
- Research Cell & Department of Physics, Bhagini Nivedita College, University of Delhi, Delhi, India
| | - Lamha Kumar
- School of Biology, Indian Institute of Science Education and Research, Thiruvananthapuram, India
| | - Riyaz Z Sayyed
- Department of Microbiology, PSGVP Mandal's Arts, Science and Commerce College, Shahada, India
| | - Anuj Ranjan
- Academy of Biology and Biotechnology, Southern Federal University, Rostov-on-Don, Russia
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10
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Xu X, Jiang J. Engineering microbiomes for enhanced bioremediation. PLoS Biol 2024; 22:e3002951. [PMID: 39680517 DOI: 10.1371/journal.pbio.3002951] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2024] Open
Abstract
Bioremediation using synthetic microbiomes offers significant advantages over traditional single-strain-based approaches. In this Perspective, we outline 5 important considerations for the rational design of pollutant-degrading microbiomes for enhanced bioremediation.
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Affiliation(s)
- Xihui Xu
- Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture and Rural Affairs, Nanjing, China
| | - Jiandong Jiang
- Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture and Rural Affairs, Nanjing, China
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11
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Pal S, Hait A, Mandal S, Roy A, Sar P, Kazy SK. Crude oil degrading efficiency of formulated consortium of bacterial strains isolated from petroleum-contaminated sludge. 3 Biotech 2024; 14:220. [PMID: 39247458 PMCID: PMC11377402 DOI: 10.1007/s13205-024-04066-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2024] [Accepted: 08/26/2024] [Indexed: 09/10/2024] Open
Abstract
Crude oil contamination has been widely recognized as a major environmental issue due to its various adverse effects. The use of inhabitant microorganisms (native to the contaminated sites) to detoxify/remove pollutants owing to their diverse metabolic capabilities is an evolving method for the removal/degradation of petroleum industry contaminants. The present study deals with the exploitation of native resident bacteria from crude oil contaminated site (oil exploration field) for bioremediation procedures. Fifteen (out of forty-four) bioremediation-relevant aerobic bacterial strains, belonging to the genera of Bacillus, Stenotrophomonas, Pseudomonas, Paenibacillus, Rhizobium, Burkholderia, and Franconibacter, isolated from crude oil containing sludge, have been selected for the present bioremediation study. Crude oil bioremediation performance of the selected bacterial consortium was assessed using microcosm-based studies. Stimulation of the microbial consortium with nitrogen or phosphorous led to the degradation of 60-70% of total petroleum hydrocarbon (TPH) in 0.25% and 0.5% crude oil experimental sets. CO2 evolution, indicative of crude oil mineralization, was evident with the highest evolution being 28.6 mg mL-1. Ecotoxicity of treated crude oil-containing media was assessed using plant seed germination assay, in which most of the 0.25% and 0.5% treated crude oil sets gave positive results thereby suggesting a reduction in crude oil toxicity.
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Affiliation(s)
- Siddhartha Pal
- Department of Biotechnology, National Institute of Technology Durgapur, Durgapur, West Bengal 713209 India
| | - Arpita Hait
- Department of Biotechnology, National Institute of Technology Durgapur, Durgapur, West Bengal 713209 India
| | - Sunanda Mandal
- Department of Biotechnology, National Institute of Technology Durgapur, Durgapur, West Bengal 713209 India
| | - Ajoy Roy
- Department of Biotechnology, National Institute of Technology Durgapur, Durgapur, West Bengal 713209 India
| | - Pinaki Sar
- Department of Bioscience and Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal 721302 India
| | - Sufia K Kazy
- Department of Biotechnology, National Institute of Technology Durgapur, Durgapur, West Bengal 713209 India
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Sethi G, Saini R, Banerjee T, Singh N. Bioaugmentation: a strategy for enhanced degradation of pesticides in biobed. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART. B, PESTICIDES, FOOD CONTAMINANTS, AND AGRICULTURAL WASTES 2024; 59:654-662. [PMID: 39313869 DOI: 10.1080/03601234.2024.2406132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Accepted: 09/15/2024] [Indexed: 09/25/2024]
Abstract
Biopurification system (BPS) or biobeds are low-cost system for decontamination of on-farm generated pesticide waste. A biobed contains a mixture of soil, lignocellulosic biomass and organic matter source (compost/peat) and works on the principal of retention of pesticide in high organic matter matrix and its subsequent degradation by microbes. Bioaugmentation, a green technology, is defined as the improvement of the degradative capacity of biobeds by augmenting specific microorganisms. During last 20 years, several studies have evaluated pesticide degradation in biobeds augmented with bacterial and fungal species and prominent microorganism include genus Pseudomonas, Sphingomonas, Arthrobacter, Phanerochaete, Stereum, Delftia, Trametes, Streptomyces etc. Degradation of pesticides belonging to major classes have been studied in the bioaugmented biobeds. Studies suggested that some pesticides were degraded faster in the bioaugmented biobeds subject to survival and proliferation of degrading microbe. However, no effect of bioaugmentation was observed on degradation of some pesticides and no clear reason for the same was evident. Bioaugmentation with pesticide degrading microorganisms/consortium in combination with rhizosphere-assisted biodegradation could be an optimal strategy for accelerating the degradation of pesticides in biobeds.
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Affiliation(s)
- Garima Sethi
- Division of Agricultural Chemicals, ICAR-Indian Agricultural Research Institute, New Delhi, India
- The Graduate School, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Renu Saini
- Division of Agricultural Chemicals, ICAR-Indian Agricultural Research Institute, New Delhi, India
- The Graduate School, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Tirthankar Banerjee
- Division of Agricultural Chemicals, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Neera Singh
- Division of Agricultural Chemicals, ICAR-Indian Agricultural Research Institute, New Delhi, India
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13
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Cheng Y, Zhang K, Huang K, Zhang H. Meta-Analysis and Machine Learning Models for Anaerobic Biodegradation Rates of Organic Contaminants in Sediments and Sludge. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:12976-12988. [PMID: 38988037 DOI: 10.1021/acs.est.4c01033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/12/2024]
Abstract
Anaerobic biodegradation rates (half-lives) of organic chemicals are pivotal for environmental risk assessment and remediation. Traditional experimental evaluation, constrained by prolonged, oxygen-free conditions, struggles to keep pace with emerging contaminants. Data-driven machine learning (ML) models serve as promising complements. However, reported quantitative structure-biodegradation relationships or ML models on anaerobic biodegradation are mostly based on small data sets (<100 records) and neglect experimental conditions, usually achieving compromised predictions. This work aimed to develop ML models for predicting the biodegradation half-lives of organic pollutants in anaerobic environments (i.e., sediment/soil and sludge). Focusing on important features of both chemicals and experimental conditions, we first curated two data sets, one for sediment/soil (SED) and the other for sludge (SLD), covering 978 records for 206 chemicals from the literature, and then conducted a meta-analysis. Next, we built a binary classification (half-life of 30 days as the cutoff) model with an accuracy of 81% and a regression model with R2 of 0.56 for SED based on LightGBM (80% and 0.31 for SLD based on Extra tree, respectively). The model interpretations underscored the significance of experimental conditions (e.g., temperature and inoculum dosage), as evidenced by their high feature importance, and the models were found to correctly capture the effects of chemical substructures, for example, branched structures and aromatic rings prolonged half-lives while methyl group and ortho-substitution on rings shortened half-lives. The applicability domains of the models were also defined, resulting in reasonable prediction for the half-lives of 41% (SED) or 67% (SLD) of over 4000 persistent, bioaccumulative, and toxic chemicals. Overall, this study pioneers ML models for predicting the anaerobic degradation half-lives, offering valuable support for future evaluation and implementation of chemical anaerobic biodegradation.
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Affiliation(s)
- Yushu Cheng
- Department of Civil and Environmental Engineering, Case Western Reserve University, Cleveland, Ohio 44106, United States
| | - Kai Zhang
- Department of Civil and Environmental Engineering, Case Western Reserve University, Cleveland, Ohio 44106, United States
| | - Kuan Huang
- Department of Civil and Environmental Engineering, Case Western Reserve University, Cleveland, Ohio 44106, United States
| | - Huichun Zhang
- Department of Civil and Environmental Engineering, Case Western Reserve University, Cleveland, Ohio 44106, United States
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Tiwari P, Park KI. Advanced Fungal Biotechnologies in Accomplishing Sustainable Development Goals (SDGs): What Do We Know and What Comes Next? J Fungi (Basel) 2024; 10:506. [PMID: 39057391 PMCID: PMC11278089 DOI: 10.3390/jof10070506] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2024] [Revised: 07/16/2024] [Accepted: 07/18/2024] [Indexed: 07/28/2024] Open
Abstract
The present era has witnessed an unprecedented scenario with extreme climate changes, depleting natural resources and rising global food demands and its widespread societal impact. From providing bio-based resources to fulfilling socio-economic necessities, tackling environmental challenges, and ecosystem restoration, microbes exist as integral members of the ecosystem and influence human lives. Microbes demonstrate remarkable potential to adapt and thrive in climatic variations and extreme niches and promote environmental sustainability. It is important to mention that advances in fungal biotechnologies have opened new avenues and significantly contributed to improving human lives through addressing socio-economic challenges. Microbe-based sustainable innovations would likely contribute to the United Nations sustainable development goals (SDGs) by providing affordable energy (use of agro-industrial waste by microbial conversions), reducing economic burdens/affordable living conditions (new opportunities by the creation of bio-based industries for a sustainable living), tackling climatic changes (use of sustainable alternative fuels for reducing carbon footprints), conserving marine life (production of microbe-based bioplastics for safer marine life) and poverty reduction (microbial products), among other microbe-mediated approaches. The article highlights the emerging trends and future directions into how fungal biotechnologies can provide feasible and sustainable solutions to achieve SDGs and address global issues.
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Affiliation(s)
- Pragya Tiwari
- Department of Horticulture & Life Science, Yeungnam University, Gyeongsan 38541, Republic of Korea;
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15
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Xu H, Zhang H, Qin C, Li X, Xu D, Zhao Y. Groundwater Cr(VI) contamination and remediation: A review from 1999 to 2022. CHEMOSPHERE 2024; 360:142395. [PMID: 38797207 DOI: 10.1016/j.chemosphere.2024.142395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2023] [Revised: 05/13/2024] [Accepted: 05/20/2024] [Indexed: 05/29/2024]
Abstract
Hexavalent chromium (Cr(VI)) contamination of groundwater has traditionally been an environmental issue of great concern due to its bioaccumulative and highly toxic nature. This paper presents a review and bibliometric analysis of the literature on the interest area "Cr(VI) in groundwater" published in the Web of Science Core Collection from 1999 to 2022. First, information on 203 actual Cr(VI)-contaminated groundwater sites around the world was summarized, and the basic characteristics of the sources and concentrations of contamination were derived. 68.95% of the sites were due to human causes and 56.43% of these sites had Cr(VI) concentrations in the range of 0-10 mg/L. At groundwater sites with high Cr(VI) contamination due to natural causes, 75.00% of the sites had Cr(VI) concentrations less than 0.2 mg/L. A total of 936 papers on "Cr(VI) in groundwater" were retrieved for bibliometric analysis: interest in research on Cr(VI) in groundwater has grown rapidly in recent years; 59.4% of the papers were published in the field of environmental sciences. A systematic review of the progress of studies on the Cr(VI) removal/remediation based on reduction, adsorption and biological processes is presented. Out of 666 papers on Cr(VI) removal/remediation, 512, 274, and 75 papers dealt with the topics of reduction, adsorption, and bioremediation, respectively. In addition, several studies have demonstrated the potential applicability of natural attenuation in the remediation of Cr(VI)-contaminated groundwater. This paper will help researchers to understand and investigate methodological strategies to remove Cr(VI) from groundwater in a more targeted and effective manner.
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Affiliation(s)
- Huichao Xu
- Key Laboratory of Groundwater Resources and Environment of Ministry of Education, College of New Energy and Environment, Jilin University, Changchun, 130021, China; National and Local Joint Engineering Laboratory for Petrochemical Contaminated Site Control and Remediation Technology, Jilin University, Changchun, 130021, China; Jilin Provincial Key Laboratory of Water Resources and Environment, College of New Energy and Environment, Jilin University, Changchun, 130021, China
| | - Hui Zhang
- Key Laboratory of Groundwater Resources and Environment of Ministry of Education, College of New Energy and Environment, Jilin University, Changchun, 130021, China; National and Local Joint Engineering Laboratory for Petrochemical Contaminated Site Control and Remediation Technology, Jilin University, Changchun, 130021, China; Jilin Provincial Key Laboratory of Water Resources and Environment, College of New Energy and Environment, Jilin University, Changchun, 130021, China
| | - Chuanyu Qin
- Key Laboratory of Groundwater Resources and Environment of Ministry of Education, College of New Energy and Environment, Jilin University, Changchun, 130021, China; National and Local Joint Engineering Laboratory for Petrochemical Contaminated Site Control and Remediation Technology, Jilin University, Changchun, 130021, China; Jilin Provincial Key Laboratory of Water Resources and Environment, College of New Energy and Environment, Jilin University, Changchun, 130021, China
| | - Xiaoyu Li
- Key Laboratory of Groundwater Resources and Environment of Ministry of Education, College of New Energy and Environment, Jilin University, Changchun, 130021, China; National and Local Joint Engineering Laboratory for Petrochemical Contaminated Site Control and Remediation Technology, Jilin University, Changchun, 130021, China; Jilin Provincial Key Laboratory of Water Resources and Environment, College of New Energy and Environment, Jilin University, Changchun, 130021, China
| | - Dan Xu
- Key Laboratory of Groundwater Resources and Environment of Ministry of Education, College of New Energy and Environment, Jilin University, Changchun, 130021, China; National and Local Joint Engineering Laboratory for Petrochemical Contaminated Site Control and Remediation Technology, Jilin University, Changchun, 130021, China; Jilin Provincial Key Laboratory of Water Resources and Environment, College of New Energy and Environment, Jilin University, Changchun, 130021, China
| | - Yongsheng Zhao
- Key Laboratory of Groundwater Resources and Environment of Ministry of Education, College of New Energy and Environment, Jilin University, Changchun, 130021, China; National and Local Joint Engineering Laboratory for Petrochemical Contaminated Site Control and Remediation Technology, Jilin University, Changchun, 130021, China; Jilin Provincial Key Laboratory of Water Resources and Environment, College of New Energy and Environment, Jilin University, Changchun, 130021, China.
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Sobral B, Samper J, Montenegro L, Mon A, Guadaño J, Gómez J, San Román J, Delgado F, Fernández J. 2D model of groundwater flow and total dissolved HCH transport through the Gállego alluvial aquifer downstream the Sardas landfill (Huesca, Spain). JOURNAL OF CONTAMINANT HYDROLOGY 2024; 265:104370. [PMID: 38851128 DOI: 10.1016/j.jconhyd.2024.104370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Revised: 05/15/2024] [Accepted: 05/30/2024] [Indexed: 06/10/2024]
Abstract
The organic pollutants disposed at the Sardas landfill in Sabiñánigo (Huesca, northeastern Spain) by the INQUINOSA lindane factory have reached the Gállego alluvial aquifer and could affect the Sabiñánigo reservoir. The daily oscillations of the reservoir water level produce a tidal effect on the piezometric heads of the aquifer. These oscillations are transmitted in a damped way with a time lag, thus attesting that the silting sediments of the reservoir and the natural silts of the Gállego alluvial are interposed between the reservoir water and the layer of sands and gravels. A 2D finite element groundwater flow and total dissolved hexachlorocyclohexane (HCH) transport model through the Gállego alluvial aquifer is presented here. The flow model was constructed to: (1) Quantify the tidal effect, produced by the daily fluctuations of the reservoir water level on the aquifer; (2) Estimate the hydrodynamic parameters of the layer of sands and gravels; and 3) Estimate the vertical hydraulic conductivity of the silting sediments and silts; and (4) Quantify aquifer/reservoir interactions. The flow model reproduces the dynamics of the tidal effect and attests that groundwater velocity and flow direction changes daily in response to the oscillations of the reservoir level. Model results reproduce the measured well hydrographs and the Darcy velocity derived from tracer tests and confirm the validity of the conceptual model. The transport model of total dissolved HCH simulates the time evolution of the contaminant plume. The computed concentrations of total dissolved HCH and the contaminant mass outflux are very sensitive to changes in the source terms and the distribution coefficient, Kd of HCH. The best fit to the measured HCH plumes in September 2010 and December 2020 is obtained with a Kd ranging from 1 to 3 L/kg. The computed flux of dissolved HCH leaving the Sardas site in 2020 towards the Sabiñánigo reservoir ranges from 0.6 kg/year for Kd = 3 L/kg to 3.1 kg/year for Kd = 1 L/kg. The findings of this study will be most useful for planning and designing remedial and containment actions at the Sardas site and other similar lindane-affected sites.
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Affiliation(s)
- Brais Sobral
- Civil Engineering Department & School, Interdisciplinar Center for Biology and Chemistry (CICA), Universidade da Coruña, Campus de Elviña, A Coruña 15071, Spain
| | - Javier Samper
- Civil Engineering Department & School, Interdisciplinar Center for Biology and Chemistry (CICA), Universidade da Coruña, Campus de Elviña, A Coruña 15071, Spain.
| | - Luis Montenegro
- Civil Engineering Department & School, Interdisciplinar Center for Biology and Chemistry (CICA), Universidade da Coruña, Campus de Elviña, A Coruña 15071, Spain
| | - Alba Mon
- Civil Engineering Department & School, Interdisciplinar Center for Biology and Chemistry (CICA), Universidade da Coruña, Campus de Elviña, A Coruña 15071, Spain
| | - Joaquín Guadaño
- Empresa Para la Gestión de Residuos Industriales, S.A., S.M.E., M.P., EMGRISA, C/ Santiago Rusiñol 12, 28040 Madrid, Spain
| | - Jorge Gómez
- Empresa Para la Gestión de Residuos Industriales, S.A., S.M.E., M.P., EMGRISA, C/ Santiago Rusiñol 12, 28040 Madrid, Spain
| | - Javier San Román
- Ebro Water District, Paseo Sagasta, 24-26, Zaragoza 50071, Spain
| | - Felipe Delgado
- Ebro Water District, Paseo Sagasta, 24-26, Zaragoza 50071, Spain
| | - Jesús Fernández
- Servicio de Prevención y Corrección de la Contaminación del Suelo, Dirección General de Calidad Ambiental, Departamento de Medio Ambiente y Turismo, Gobierno de Aragón. San pedro Nolasco, 7, 50071 Zaragoza, Spain
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Harindintwali JD, He C, Wen X, Liu Y, Wang M, Fu Y, Xiang L, Jiang J, Jiang X, Wang F. A comparative evaluation of biochar and Paenarthrobacter sp. AT5 for reducing atrazine risks to soybeans and bacterial communities in black soil. ENVIRONMENTAL RESEARCH 2024; 252:119055. [PMID: 38710429 DOI: 10.1016/j.envres.2024.119055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2024] [Revised: 04/29/2024] [Accepted: 04/30/2024] [Indexed: 05/08/2024]
Abstract
Application of biochar and inoculation with specific microbial strains offer promising approaches for addressing atrazine contamination in agricultural soils. However, determining the optimal method necessitates a comprehensive understanding of their effects under similar conditions. This study aimed to evaluate the effectiveness of biochar and Paenarthrobacter sp. AT5, a bacterial strain known for its ability to degrade atrazine, in reducing atrazine-related risks to soybean crops and influencing bacterial communities. Both biochar and strain AT5 significantly improved atrazine degradation in both planted and unplanted soils, with the most substantial reduction observed in soils treated with strain AT5. Furthermore, bioaugmentation with strain AT5 outperformed biochar in enhancing soybean growth, photosynthetic pigments, and antioxidant defenses. While biochar promoted higher soil bacterial diversity compared to strain AT5, the latter selectively enriched specific bacterial populations. Additionally, soil inoculated with strain AT5 displayed a notable increase in the abundance of key genes associated with atrazine degradation (trzN, atzB, and atzC), surpassing the effects observed with biochar addition, thus highlighting its effectiveness in mitigating atrazine risks in soil.
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Affiliation(s)
- Jean Damascene Harindintwali
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Chao He
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; Institute of Environment Pollution Control and Treatment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Xin Wen
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yu Liu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Mingyi Wang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; College of Geographical Sciences, Nantong University, Nantong, 226001, China
| | - Yuhao Fu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Leilei Xiang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Jiandong Jiang
- Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture and Rural Affairs, Nanjing, 210095, China
| | - Xin Jiang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Fang Wang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China; RWTH Aachen University, Institute for Environmental Research, WorringerWeg 1, 52074, Aachen, Germany.
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18
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Deng W, Takada Y, Nanasato Y, Kishida K, Stari L, Ohtsubo Y, Tabei Y, Watanabe M, Nagata Y. Transgenic Arabidopsis thaliana plants expressing bacterial γ-hexachlorocyclohexane dehydrochlorinase LinA. BMC Biotechnol 2024; 24:42. [PMID: 38898480 PMCID: PMC11186250 DOI: 10.1186/s12896-024-00867-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2024] [Accepted: 06/05/2024] [Indexed: 06/21/2024] Open
Abstract
BACKGROUND γ-Hexachlorocyclohexane (γ-HCH), an organochlorine insecticide of anthropogenic origin, is a persistent organic pollutant (POP) that causes environmental pollution concerns worldwide. Although many γ-HCH-degrading bacterial strains are available, inoculating them directly into γ-HCH-contaminated soil is ineffective because of the low survival rate of the exogenous bacteria. Another strategy for the bioremediation of γ-HCH involves the use of transgenic plants expressing bacterial enzyme for γ-HCH degradation through phytoremediation. RESULTS We generated transgenic Arabidopsis thaliana expressing γ-HCH dehydrochlroninase LinA from bacterium Sphingobium japonicum strain UT26. Among the transgenic Arabidopsis T2 lines, we obtained one line (A5) that expressed and accumulated LinA well. The A5-derived T3 plants showed higher tolerance to γ-HCH than the non-transformant control plants, indicating that γ-HCH is toxic for Arabidopsis thaliana and that this effect is relieved by LinA expression. The crude extract of the A5 plants showed γ-HCH degradation activity, and metabolites of γ-HCH produced by the LinA reaction were detected in the assay solution, indicating that the A5 plants accumulated the active LinA protein. In some A5 lines, the whole plant absorbed and degraded more than 99% of γ-HCH (10 ppm) in the liquid medium within 36 h. CONCLUSION The transgenic Arabidopsis expressing active LinA absorbed and degraded γ-HCH in the liquid medium, indicating the high potential of LinA-expressing transgenic plants for the phytoremediation of environmental γ-HCH. This study marks a crucial step toward the practical use of transgenic plants for the phytoremediation of POPs.
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Affiliation(s)
- Wenhao Deng
- Department of Molecular and Chemical Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, 980-8577, Japan
| | - Yoshinobu Takada
- Department of Molecular and Chemical Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, 980-8577, Japan
| | - Yoshihiko Nanasato
- Forest Bio-Research Center, Forestry and Forest Products Research Institute (FFPRI), Forest Research and Management Organization (FRMO), 3809-1 Ishi, Juo, Hitachi, Ibaraki, 319-1301, Japan
| | - Kouhei Kishida
- Department of Molecular and Chemical Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, 980-8577, Japan
| | - Leonardo Stari
- Department of Molecular and Chemical Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, 980-8577, Japan
| | - Yoshiyuki Ohtsubo
- Department of Molecular and Chemical Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, 980-8577, Japan
| | - Yutaka Tabei
- Faculty of Food and Nutritional Sciences, Toyo University, 1-1-1 Izumino, Itakura-Machi, Ora-Gun, Gunma, 374-0193, Japan
| | - Masao Watanabe
- Department of Molecular and Chemical Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, 980-8577, Japan
| | - Yuji Nagata
- Department of Molecular and Chemical Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, 980-8577, Japan.
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Perdigão R, Tomasino MP, Magalhães C, Carvalho MF, Almeida CMR, Mucha AP. Microbial response to a port fuel spill: Community dynamics and potential for bioremediation. MARINE POLLUTION BULLETIN 2024; 203:116434. [PMID: 38713928 DOI: 10.1016/j.marpolbul.2024.116434] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 04/22/2024] [Accepted: 04/26/2024] [Indexed: 05/09/2024]
Abstract
Following a fuel leakage inside a Portuguese maritime port, we conducted parallel 30-day experiments using contaminated seawater and fuel, sampled five days after the incident. This study aimed to (i)survey the native microbial community response to the spilled fuel and (ii)evaluate the efficacy of bioremediation, both biostimulation and bioaugmentation with a lyophilized bacterial consortium (Rhodococcus erythropolis, Pseudomonas sp.), in accelerating hydrocarbon degradation. Metabarcoding analysis revealed a shift in microbial communities, with increased abundance of hydrocarbon-degraders (e.g. Alcanivorax, Thalassospira). Ninety-five hydrocarbonoclastic bacteria were isolated, including key groups from the enriched communities. The lyophilized bacteria added in bioaugmentation, enhanced the abundance of hydrocarbon-degraders over time and were recovered throughout time. Bioremediation treatments favoured biodegradation, achieving over 60 % removal of total petroleum hydrocarbons after 15 days, contrasting with natural attenuation where almost no TPH was removed. This work highlights the potential of bioremediation technologies to accelerate hydrocarbon-degrading activity, for oil spills inside ports.
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Affiliation(s)
- Rafaela Perdigão
- Interdisciplinary Centre of Marine and Environmental Research of the University of Porto, Novo Edifício do Terminal de Cruzeiros do Porto de Leixões, Avenida General Norton de Matos, S/N, Matosinhos 4450-208, Portugal; School of Medicine and Biomedical Sciences, University of Porto, Rua de Jorge Viterbo Ferreira, 228, Porto 4050-313, Portugal.
| | - Maria Paola Tomasino
- Interdisciplinary Centre of Marine and Environmental Research of the University of Porto, Novo Edifício do Terminal de Cruzeiros do Porto de Leixões, Avenida General Norton de Matos, S/N, Matosinhos 4450-208, Portugal.
| | - Catarina Magalhães
- Interdisciplinary Centre of Marine and Environmental Research of the University of Porto, Novo Edifício do Terminal de Cruzeiros do Porto de Leixões, Avenida General Norton de Matos, S/N, Matosinhos 4450-208, Portugal; Faculty of Sciences, University of Porto, Rua do Campo Alegre 790, Porto 4150-171, Portugal.
| | - Maria F Carvalho
- Interdisciplinary Centre of Marine and Environmental Research of the University of Porto, Novo Edifício do Terminal de Cruzeiros do Porto de Leixões, Avenida General Norton de Matos, S/N, Matosinhos 4450-208, Portugal; School of Medicine and Biomedical Sciences, University of Porto, Rua de Jorge Viterbo Ferreira, 228, Porto 4050-313, Portugal.
| | - C Marisa R Almeida
- Interdisciplinary Centre of Marine and Environmental Research of the University of Porto, Novo Edifício do Terminal de Cruzeiros do Porto de Leixões, Avenida General Norton de Matos, S/N, Matosinhos 4450-208, Portugal; Faculty of Sciences, University of Porto, Rua do Campo Alegre 790, Porto 4150-171, Portugal.
| | - Ana P Mucha
- Interdisciplinary Centre of Marine and Environmental Research of the University of Porto, Novo Edifício do Terminal de Cruzeiros do Porto de Leixões, Avenida General Norton de Matos, S/N, Matosinhos 4450-208, Portugal; Faculty of Sciences, University of Porto, Rua do Campo Alegre 790, Porto 4150-171, Portugal.
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20
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Eckel F, Sinzinger K, Van Opdenbosch D, Schieder D, Sieber V, Zollfrank C. Influence of microbial biomass content on biodegradation and mechanical properties of poly(3-hydroxybutyrate) composites. Biodegradation 2024; 35:209-224. [PMID: 37402058 PMCID: PMC10881657 DOI: 10.1007/s10532-023-10038-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Accepted: 05/30/2023] [Indexed: 07/05/2023]
Abstract
Biodegradation rates and mechanical properties of poly(3-hydroxybutyrate) (PHB) composites with green algae and cyanobacteria were investigated for the first time. To the authors knowledge, the addition of microbial biomass led to the biggest observed effect on biodegradation so far. The composites with microbial biomass showed an acceleration of the biodegradation rate and a higher cumulative biodegradation within 132 days compared to PHB or the biomass alone. In order to determine the causes for the faster biodegradation, the molecular weight, the crystallinity, the water uptake, the microbial biomass composition and scanning electron microscope images were assessed. The molecular weight of the PHB in the composites was lower than that of pure PHB while the crystallinity and microbial biomass composition were the same for all samples. A direct correlation of water uptake and crystallinity with biodegradation rate could not be observed. While the degradation of molecular weight of PHB during sample preparation contributed to the improvement of biodegradation, the main reason was attributed to biostimulation by the added biomass. The resulting enhancement of the biodegradation rate appears to be unique in the field of polymer biodegradation. The tensile strength was lowered, elongation at break remained constant and Young's modulus was increased compared to pure PHB.
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Affiliation(s)
- Felix Eckel
- Chair for Biogenic Polymers, TUM Campus Straubing for Biotechnology and Sustainability, Technical University of Munich, Schulgasse 16, Straubing, 94315, Germany
| | - Korbinian Sinzinger
- Chair for Chemistry of Biogenic Resources, TUM Campus Straubing for Biotechnology and Sustainability, Technical University of Munich, Schulgasse 16, Straubing, 94315, Germany
| | - Daniel Van Opdenbosch
- Chair for Biogenic Polymers, TUM Campus Straubing for Biotechnology and Sustainability, Technical University of Munich, Schulgasse 16, Straubing, 94315, Germany
| | - Doris Schieder
- Chair for Chemistry of Biogenic Resources, TUM Campus Straubing for Biotechnology and Sustainability, Technical University of Munich, Schulgasse 16, Straubing, 94315, Germany
| | - Volker Sieber
- Chair for Chemistry of Biogenic Resources, TUM Campus Straubing for Biotechnology and Sustainability, Technical University of Munich, Schulgasse 16, Straubing, 94315, Germany
| | - Cordt Zollfrank
- Chair for Biogenic Polymers, TUM Campus Straubing for Biotechnology and Sustainability, Technical University of Munich, Schulgasse 16, Straubing, 94315, Germany.
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21
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Žaltauskaitė J, Meištininkas R, Dikšaitytė A, Degutytė-Fomins L, Mildažienė V, Naučienė Z, Žūkienė R, Koga K. Heavy fuel oil-contaminated soil remediation by individual and bioaugmentation-assisted phytoremediation with Medicago sativa and with cold plasma-treated M. sativa. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:30026-30038. [PMID: 38594559 DOI: 10.1007/s11356-024-33182-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Accepted: 03/28/2024] [Indexed: 04/11/2024]
Abstract
Developing an optimal environmentally friendly bioremediation strategy for petroleum products is of high interest. This study investigated heavy fuel oil (HFO)-contaminated soil (4 and 6 g kg-1) remediation by individual and combined bioaugmentation-assisted phytoremediation with alfalfa (Medicago sativa L.) and with cold plasma (CP)-treated M. sativa. After 14 weeks of remediation, HFO removal efficiency was in the range between 61 and 80% depending on HFO concentration and remediation technique. Natural attenuation had the lowest HFO removal rate. As demonstrated by growth rate and biomass acquisition, M. sativa showed good tolerance to HFO contamination. Cultivation of M. sativa enhanced HFO degradation and soil quality improvement. Bioaugmentation-assisted phytoremediation was up to 18% more efficient in HFO removal through alleviated HFO stress to plants, stimulated plant growth, and biomass acquisition. Cold plasma seed treatment enhanced HFO removal by M. sativa at low HFO contamination and in combination with bioaugmentation it resulted in up to 14% better HFO removal compared to remediation with CP non-treated and non-bioaugmented M. sativa. Our results show that the combination of different remediation techniques is an effective soil rehabilitation strategy to remove HFO and improve soil quality. CP plant seed treatment could be a promising option in soil clean-up and valorization.
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Affiliation(s)
- Jūratė Žaltauskaitė
- Laboratory of Heat Equipment Research and Testing, Lithuanian Energy Institute, Breslaujos 3, 44404, Kaunas, Lithuania.
- Department of Environmental Sciences, Vytautas Magnus University, Universiteto 10, Akademija, Kaunas District, Lithuania.
| | - Rimas Meištininkas
- Laboratory of Heat Equipment Research and Testing, Lithuanian Energy Institute, Breslaujos 3, 44404, Kaunas, Lithuania
| | - Austra Dikšaitytė
- Department of Environmental Sciences, Vytautas Magnus University, Universiteto 10, Akademija, Kaunas District, Lithuania
| | - Laima Degutytė-Fomins
- Department of Environmental Sciences, Vytautas Magnus University, Universiteto 10, Akademija, Kaunas District, Lithuania
| | - Vida Mildažienė
- Department of Environmental Sciences, Vytautas Magnus University, Universiteto 10, Akademija, Kaunas District, Lithuania
| | - Zita Naučienė
- Department of Environmental Sciences, Vytautas Magnus University, Universiteto 10, Akademija, Kaunas District, Lithuania
| | - Rasa Žūkienė
- Department of Environmental Sciences, Vytautas Magnus University, Universiteto 10, Akademija, Kaunas District, Lithuania
| | - Kazunori Koga
- Center of Plasma Nano-Interface Engineering, Kyushu University, Fukuoka, 819-0395, Japan
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22
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Rendón-Castrillón L, Ramírez-Carmona M, Ocampo-López C, González-López F, Cuartas-Uribe B, Mendoza-Roca JA. Efficient bioremediation of indigo-dye contaminated textile wastewater using native microorganisms and combined bioaugmentation-biostimulation techniques. CHEMOSPHERE 2024; 353:141538. [PMID: 38428533 DOI: 10.1016/j.chemosphere.2024.141538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Revised: 01/18/2024] [Accepted: 02/23/2024] [Indexed: 03/03/2024]
Abstract
In this work, the bioremediation of wastewater from the textile industry with indigo dye content was carried out using combined bioaugmentation, bioventilation, and biostimulation techniques. Initially, the inoculum was prepared by isolating the microorganisms from the textile wastewater in a 2 L bioreactor. Then, the respirometry technique was implemented to determine the affinity of the microorganisms and the substrate by measuring CO2 and allowed the formulation of an empirical mathematical model for the growth kinetics of the microorganism. Finally, the bioremediation was carried out in a 3 L bioreactor obtaining an indigo dye removal efficiency of 20.7 ± 1.2%, 24.0 ± 1.5%, and 29.7 ± 1.1% for equivalent wavelengths of 436 nm, 525 nm, and 620 nm. The chemical oxygen demand showed an average reduction of 88.9 ± 2.5%, going from 470.7 ± 15.6 to 52.3 ± 10.7 ppm after 30 days under constant agitation and aeration. A negative generalized exponential model was fitted to assess the affinity of the microorganism with the wastewater as a substrate by evaluating the production of CO2 during the bioremediation. Bioremediation techniques improve water discharge parameters compared to chemical treatments implemented in the industry, reducing the use of substances that can generate secondary pollution. Bioaugmentation, biostimulation, and bioventing of the textile wastewater in this study demonstrate the potential of these combined techniques to serve as an efficient alternative for indigo-contaminated wastewater in the textile industry.
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Affiliation(s)
- Leidy Rendón-Castrillón
- Centro de Estudios y de Investigación en Biotecnología (CIBIOT), Facultad de Ingeniería Química, Universidad Pontificia Bolivariana, Circular 1(a) No. 70-01, Medellín, 050031, Colombia
| | - Margarita Ramírez-Carmona
- Centro de Estudios y de Investigación en Biotecnología (CIBIOT), Facultad de Ingeniería Química, Universidad Pontificia Bolivariana, Circular 1(a) No. 70-01, Medellín, 050031, Colombia
| | - Carlos Ocampo-López
- Centro de Estudios y de Investigación en Biotecnología (CIBIOT), Facultad de Ingeniería Química, Universidad Pontificia Bolivariana, Circular 1(a) No. 70-01, Medellín, 050031, Colombia.
| | - Federico González-López
- Centro de Estudios y de Investigación en Biotecnología (CIBIOT), Facultad de Ingeniería Química, Universidad Pontificia Bolivariana, Circular 1(a) No. 70-01, Medellín, 050031, Colombia
| | - Beatriz Cuartas-Uribe
- Instituto de Seguridad Industrial, Radiofísica y Medioambiental, Universitat Politècnica de València, 46022, Valencia, Spain
| | - José Antonio Mendoza-Roca
- Instituto de Seguridad Industrial, Radiofísica y Medioambiental, Universitat Politècnica de València, 46022, Valencia, Spain
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Tedesco P, Balzano S, Coppola D, Esposito FP, de Pascale D, Denaro R. Bioremediation for the recovery of oil polluted marine environment, opportunities and challenges approaching the Blue Growth. MARINE POLLUTION BULLETIN 2024; 200:116157. [PMID: 38364643 DOI: 10.1016/j.marpolbul.2024.116157] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Revised: 02/08/2024] [Accepted: 02/09/2024] [Indexed: 02/18/2024]
Abstract
The Blue Growth strategy promises a sustainable use of marine resources for the benefit of the society. However, oil pollution in the marine environment is still a serious issue for human, animal, and environmental health; in addition, it deprives citizens of the potential economic and recreational advantages in the affected areas. Bioremediation, that is the use of bio-resources for the degradation of pollutants, is one of the focal themes on which the Blue Growth aims to. A repertoire of marine-derived bio-products, biomaterials, processes, and services useful for efficient, economic, low impact, treatments for the recovery of oil-polluted areas has been demonstrated in many years of research around the world. Nonetheless, although bioremediation technology is routinely applied in soil, this is not still standardized in the marine environment and the potential market is almost underexploited. This review provides a summary of opportunities for the exploiting and addition of value to research products already validated. Moreover, the review discusses challenges that limit bioremediation in marine environment and actions that can facilitate the conveying of valuable products/processes towards the market.
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Affiliation(s)
- Pietro Tedesco
- Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, Via Ammiraglio Acton, 55, 80133 Naples, Italy
| | - Sergio Balzano
- Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, Via Ammiraglio Acton, 55, 80133 Naples, Italy
| | - Daniela Coppola
- Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, Via Ammiraglio Acton, 55, 80133 Naples, Italy
| | - Fortunato Palma Esposito
- Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, Via Ammiraglio Acton, 55, 80133 Naples, Italy
| | - Donatella de Pascale
- Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, Via Ammiraglio Acton, 55, 80133 Naples, Italy; Institute of Biochemistry and Cellular Biology, National Research Council, Via Pietro Castellino 111, 80131 Naples, Italy.
| | - Renata Denaro
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti Rome, Italy.
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Maucourt F, Doumèche B, Nazaret S, Fraissinet-Tachet L. Under explored roles of microbial ligninolytic enzymes in aerobic polychlorinated biphenyl transformation. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:19071-19084. [PMID: 38372925 DOI: 10.1007/s11356-024-32291-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 01/28/2024] [Indexed: 02/20/2024]
Abstract
Polychlorinated biphenyls (PCBs) are persistent organic pollutants in the environment that are responsible for many adverse health effects. Bioremediation appears to be a healthy and cost-effective alternative for remediating PCB-contaminated environments. While some microbial species have been observed to be capable of transforming PCBs, only two different microbial pathways (rdh and bph pathways) have been described to be involved in PCB transformations. Ligninolytic enzymes have been observed or are under suspicion in some microbial PCB transformations. However, the role of these promising PCB-transforming enzymes, which are produced by fungi and some aerobic bacteria, is still unclear. The present review describes their role by identifying microbial PCB-transforming species and their reported ligninolytic enzymes whether proven or suspected to be involved in PCB transformations. There are several lines of evidence that ligninolytic enzymes are responsible for PCB transformations such as (1) the ability of purified laccases from Myceliophthora thermophila, Pycnoporus cinnabarinus, Trametes versicolor, Cladosporium sp, and Coprinus cumatus to transform hydroxy-PCBs; (2) the increased production of laccases and peroxidases by many fungi in the presence of PCBs; and (3) the enhanced PCB transformation by Pseudomonas stutzeri and Sinorhizobium meliloti NM after the addition of ligninolytic enzyme enhancers. However, if the involvement of ligninolytic enzymes in PCB transformation is clearly demonstrated in some fungal species, it does not seem to be implicated in all microbial species suggesting other still unknown metabolic pathways involved in PCB transformation and different from the bph and rdh pathways. Therefore, PCB transformation may involve several metabolic pathways, some involving ligninolytic enzymes, bph or rdh genes, and some still unknown, depending on the microbial species. In addition, current knowledge does not fully clarify the role of ligninolytic enzymes in PCB oxidation and dechlorination. Therefore, further studies focusing on purified ligninolytic enzymes are needed to clearly elucidate their role in PCB transformation.
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Affiliation(s)
- Flavien Maucourt
- Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, F-7 69622, Villeurbanne, France
- ENVISOL, 2-4 rue Hector Berlioz, F-38110, La Tour du Pin, France
| | - Bastien Doumèche
- Université de Lyon, Université Claude Bernard Lyon 1, CNRS 5246 ICBMS, F-7 69622, Villeurbanne, France
| | - Sylvie Nazaret
- Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, F-7 69622, Villeurbanne, France
| | - Laurence Fraissinet-Tachet
- Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, F-7 69622, Villeurbanne, France.
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25
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Hussain F, Kim LH, Kim H, Kim Y, Oh SE, Kim S. Enhanced bioremediation of acid mine-influenced groundwater with micro-sized emulsified corn oil droplets (MOD) and sulfate-reducing bacteria (Desulfovibrio vulgaris) in a microcosm assay. CHEMOSPHERE 2024; 352:141403. [PMID: 38368967 DOI: 10.1016/j.chemosphere.2024.141403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2023] [Revised: 01/30/2024] [Accepted: 02/05/2024] [Indexed: 02/20/2024]
Abstract
High concentrations of metals and sulfates in acid mine drainage (AMD) are the cause of the severe environmental hazard that mining operations pose to the surrounding ecosystem. Little study has been conducted on the cost-effective biological process for treating high AMD. The current research investigated the potential of the proposed carbon source and sulfate reduction bacteria (SRB) culture in achieving the bioremediation of sulfate and heavy metals. This work uses individual and combinatorial bioaugmentation and bio-stimulation methods to bioremediate acid-mine-influenced groundwater in batch microcosm experiments. Bioaugmentation and bio-stimulation methods included pure culture SRB (Desulfovibrio vulgaris) and microsized oil droplet (MOD) by emulsifying corn oil. The research tested natural attenuation (T 1), bioaugmentation (T2), biostimulation (T3), and bioaugmentation plus biostimulation (T4) for AM-contaminated groundwater remediation. Bioaugmentation and bio-stimulation showed the greatest sulfate reduction (75.3%) and metal removal (95-99%). Due to carbon supply scarcity, T1 and T2 demonstrated 15.7% and 27.8% sulfate reduction activities. Acetate concentrations in T3 and T4 increased bacterial activity by providing carbon sources. Metal bio-precipitation was substantially linked with sulfate reduction and cell growth. SEM-EDS study of precipitates in T3 and T4 microcosm spectra indicated peaks for S, Cd, Mn, Cu, Zn, and Fe, indicating metal-sulfide association for metal removal precipitates. The MOD provided a constant carbon source for indigenous bacteria, while Desulfovibrio vulgaris increased biogenic sulfide synthesis for heavy metal removal.
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Affiliation(s)
- Fida Hussain
- Research Institute for Advanced Industrial Technology, Korea University, 2511 Sejong-ro, Sejong city, 30019, Republic of Korea; Department of Environmental Science, University of Lahore, Lahore, 545590, Pakistan; Department of biological Environment, Kangwon National University, Chuncheon-si, 24341, Republic of Korea
| | - Lan Hee Kim
- Research Institute for Advanced Industrial Technology, Korea University, 2511 Sejong-ro, Sejong city, 30019, Republic of Korea
| | - Huiyun Kim
- Department of Environmental Engineering, Korea University, 2511 Sejong-ro, Sejong city, 30019, Republic of Korea
| | - Young Kim
- Department of Environmental Engineering, Korea University, 2511 Sejong-ro, Sejong city, 30019, Republic of Korea
| | - Sang-Eun Oh
- Department of biological Environment, Kangwon National University, Chuncheon-si, 24341, Republic of Korea
| | - Sungpyo Kim
- Research Institute for Advanced Industrial Technology, Korea University, 2511 Sejong-ro, Sejong city, 30019, Republic of Korea; Department of Environmental Engineering, Korea University, 2511 Sejong-ro, Sejong city, 30019, Republic of Korea.
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26
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Zhang D, Lei Y, Wang C, Lan S, Li X, Xie Y. Responses of composition and metabolism of microbial communities during the remediation of black and odorous water using bioaugmentation and aeration. ENVIRONMENTAL RESEARCH 2024; 243:117895. [PMID: 38081350 DOI: 10.1016/j.envres.2023.117895] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Revised: 12/05/2023] [Accepted: 12/06/2023] [Indexed: 02/06/2024]
Abstract
This study elucidated the effect patterns of aeration and bioaugmentation on indigenous microbial communities, metabolites, and metabolic pathways in the remediation of black and odorous water. This is crucial for the precise formulation and targeted development of effective microbial consortia, as well as for tracking and forecasting the bioremediation of black and odorous water. The results confirmed that combining bioaugmentation with aeration markedly enhanced the degradation of COD, NH4+-N, and TN and the conversion of Fe and Mn. Aeration significantly increased the relative abundance of Flavobacterium and Diaphorobacter, and the positive interbacterial interaction in the effective microbial consortia EM31 gave the constituent strain Klebsiella and Bacillus a dominant niche in the bioaugmentation. Furthermore, bioaugmentation improved the capacity of the indigenous microbial consortia to utilize basic carbon source, particularly the utilization of L-glycerol, I-erythritol, glucose-1-phosphate, and the catabolism of cysteine and methionine. Moreover, during the remediation of black and odorous water by aeration and bioaugmentation, Glucosinolate biosynthesis (map00966), Steroid hormone biosynthesis (map00140), Folate biosynthesis (map00790), One carbon pool by folate (map00670), and Tyrosine metabolism (map00350) were identified as key functional metabolic pathways in microbial communities.
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Affiliation(s)
- Dan Zhang
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China
| | - Yu Lei
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Chen Wang
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China
| | - Shuhuan Lan
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xudong Li
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China
| | - Yifei Xie
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China.
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27
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Geris R, Malta M, Soares LA, de Souza Neta LC, Pereira NS, Soares M, Reis VDS, Pereira MDG. A Review about the Mycoremediation of Soil Impacted by War-like Activities: Challenges and Gaps. J Fungi (Basel) 2024; 10:94. [PMID: 38392767 PMCID: PMC10890077 DOI: 10.3390/jof10020094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2023] [Revised: 01/18/2024] [Accepted: 01/18/2024] [Indexed: 02/24/2024] Open
Abstract
(1) Background: The frequency and intensity of war-like activities (war, military training, and shooting ranges) worldwide cause soil pollution by metals, metalloids, explosives, radionuclides, and herbicides. Despite this environmentally worrying scenario, soil decontamination in former war zones almost always involves incineration. Nevertheless, this practice is expensive, and its efficiency is suitable only for organic pollutants. Therefore, treating soils polluted by wars requires efficient and economically viable alternatives. In this sense, this manuscript reviews the status and knowledge gaps of mycoremediation. (2) Methods: The literature review consisted of searches on ScienceDirect and Web of Science for articles (1980 to 2023) on the mycoremediation of soils containing pollutants derived from war-like activities. (3) Results: This review highlighted that mycoremediation has many successful applications for removing all pollutants of war-like activities. However, the mycoremediation of soils in former war zones and those impacted by military training and shooting ranges is still very incipient, with most applications emphasizing explosives. (4) Conclusion: The mycoremediation of soils from conflict zones is an entirely open field of research, and the main challenge is to optimize experimental conditions on a field scale.
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Affiliation(s)
- Regina Geris
- Institute of Chemistry, Federal University of Bahia, Barão de Jeremoabo Street, s/n, Campus Ondina, 40170-115 Salvador, BA, Brazil
| | - Marcos Malta
- Institute of Chemistry, Federal University of Bahia, Barão de Jeremoabo Street, s/n, Campus Ondina, 40170-115 Salvador, BA, Brazil
| | - Luar Aguiar Soares
- Department of Exact and Earth Sciences, Bahia State University, Silveira Martins Street, N. 2555, Cabula, 41150-000 Salvador, BA, Brazil
| | - Lourdes Cardoso de Souza Neta
- Department of Exact and Earth Sciences, Bahia State University, Silveira Martins Street, N. 2555, Cabula, 41150-000 Salvador, BA, Brazil
| | - Natan Silva Pereira
- Department of Exact and Earth Sciences, Bahia State University, Silveira Martins Street, N. 2555, Cabula, 41150-000 Salvador, BA, Brazil
| | - Miguel Soares
- Institute of Chemistry, Federal University of Bahia, Barão de Jeremoabo Street, s/n, Campus Ondina, 40170-115 Salvador, BA, Brazil
| | - Vanessa da Silva Reis
- Department of Exact and Earth Sciences, Bahia State University, Silveira Martins Street, N. 2555, Cabula, 41150-000 Salvador, BA, Brazil
| | - Madson de Godoi Pereira
- Department of Exact and Earth Sciences, Bahia State University, Silveira Martins Street, N. 2555, Cabula, 41150-000 Salvador, BA, Brazil
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Ghafghazi L, Taghavi L, Rasekh B, Farahani H, Hassani AH. Application of compost assisted by Fe 3O 4 nanoparticles in di (2-ethylhexyl) phthalate-contaminated soil remediation: Biostimulation strategy, Soil responses, and RSM/CCD Optimization. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 908:168029. [PMID: 37898188 DOI: 10.1016/j.scitotenv.2023.168029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Revised: 10/01/2023] [Accepted: 10/20/2023] [Indexed: 10/30/2023]
Abstract
Globally, contamination of agricultural soils by phthalate esters (PAEs) caused by direct consumption of plastic mulch films has been confirmed. The most widely used plasticizer is di (2-ethylhexyl) phthalate (DEHP), which is a more recalcitrant endocrine-disrupting chemical (EDC). Because of its low solubility and hydrophobicity, it remains in the soil longer, causes bioaccumulation in agricultural products, and has negative repercussions for food safety. In this study, the performance of kitchen organic waste compost assisted by Fe3O4 nanoparticles in DEHP removal efficiency (%) and soil C:N ratio (two responses) was optimized using Response Surface Methodology (RSM) based on Central Composite Design (CCD) in Design-Expert software (11.0.3.0). Under optimum conditions, a DEHP concentration of 10 mg·kg-1 (dw soil), a retention time of 35 days, an NPs dose of 0.99 g·kg-1 (media), a removal efficiency of 91.6 %, and a soil C:N ratio of 10.5 with a desirability of 0.963 were determined. A quadratic model (P-value <0.0001, adjusted R2 = 0.974 (Y1), 0.943 (Y2)) was used to predict the variables and their interactions. The agricultural soil responses in the treatments amended by compost and Fe3O4 NPs (SCN) showed a significant increase in SOM, TC, TN, AP, K, and Fe nutrients when compared to the control (P < 0.05). After 35 days, in the SC1N3 treatment (DEHP concentration = 10 mg·kg-1, NPs dose =1.2 g·kg-1), with higher DEHP removal efficiency (89.57 %), the C:N:P ratio was equal to 100: 9.75:0.69, and the total microbial colony count was 3.6 × 109 CFU/ml at pH 7.45. The study found that compost nutrients and Fe-based nanoparticle micronutrients can enhance DEHP degradation by stimulating the soil's native microflora. As a result, the synergistic potential of compost and Fe3O4 nanoparticles can be considered a promising, cost-effective, and agri-environmentally friendly approach in the "assisted bioremediation" strategy of DEHP-contaminated soils.
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Affiliation(s)
- Laleh Ghafghazi
- Department of Environmental Science and Forest, Faculty of Natural Resources and Environment, Science and Research Branch, Islamic Azad University (SRBIAU), P. O. Box 14515-775, Tehran, Iran
| | - Lobat Taghavi
- Department of Environmental Science and Forest, Faculty of Natural Resources and Environment, Science and Research Branch, Islamic Azad University (SRBIAU), P. O. Box 14515-775, Tehran, Iran.
| | - Behnam Rasekh
- Environment & Biotechnology Division, Research Institute of Petroleum Industry (RIPI), P. O. Box: 14665-137, Tehran, Iran
| | - Hadi Farahani
- Research Institute of Petroleum Industry (RIPI), P. O. Box 1485733111, Tehran, Iran
| | - Amir Hessam Hassani
- Department of Environmental Engineering, Faculty of Natural Resources and Environment, Science and Research Branch, Islamic Azad University, Tehran, Iran
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Azuazu IN, Sam K, Campo P, Coulon F. Challenges and opportunities for low-carbon remediation in the Niger Delta: Towards sustainable environmental management. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 900:165739. [PMID: 37499826 DOI: 10.1016/j.scitotenv.2023.165739] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2023] [Revised: 07/14/2023] [Accepted: 07/21/2023] [Indexed: 07/29/2023]
Abstract
There is increasing demand for low-carbon remediation strategies for reducing greenhouse gas emissions and promoting sustainable development in the management of environmental contamination. This trend is within the broader context of sustainable remediation strategies that balance environmental, economic, and social aspects. This article critically reviewed existing literature to evaluate and compare various low-carbon remediation methods, such as bioremediation, phytoremediation, in situ chemical oxidation, soil vapour extraction, and electrokinetic remediation, to identify suitable techniques for the remediation of oil-contaminated sites in the Niger Delta region of Nigeria. We analysed the UK sustainable remediation frameworks (SuRF-UK) to glean lessons for the Nigerian context. Our findings indicate that bioremediation and phytoremediation are particularly promising low-carbon remediation technologies for the Niger Delta region due to their cost-effectiveness and adaptability to local conditions. We proposed a framework that deeply considers opportunities for achieving multiple goals including effective remediation and limited greenhouse gas emissions while returning net social and economic benefit to local communities. The proposed framework will help decision makers to implement effective remediation technologies that meet sustainability indices, integrates emissions considerations return net environmental benefit to local communities. There is a need for policymakers to establish and enforce policies and regulations that support sustainable remediation practises, build the capacity of stakeholders, invest in research and development, and promote collaboration among stakeholders to create a regulatory environment that supports sustainable remediation practises and promotes environmental sustainability in the region. This study provides insights for achieving low-carbon remediation in regions addressing land contamination by different contaminants and facilitates the adoption of remediation technologies that consider contextual socio-economic and environmental indices for sustainable development.
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Affiliation(s)
| | - Kabari Sam
- School of the Environment, Geography and Geosciences, University of Portsmouth, PO1 3QL, UK
| | - Pablo Campo
- School of Water Energy and Environment, Cranfield University, MK430AL, UK
| | - Frederic Coulon
- School of Water Energy and Environment, Cranfield University, MK430AL, UK.
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30
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Wu R, Shen R, Liang Z, Zheng S, Yang Y, Lu Q, Adrian L, Wang S. Improve Niche Colonization and Microbial Interactions for Organohalide-Respiring-Bacteria-Mediated Remediation of Chloroethene-Contaminated Sites. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:17338-17352. [PMID: 37902991 DOI: 10.1021/acs.est.3c05932] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/01/2023]
Abstract
Organohalide-respiring bacteria (OHRB)-mediated reductive dehalogenation is promising in in situ bioremediation of chloroethene-contaminated sites. The bioremediation efficiency of this approach is largely determined by the successful colonization of fastidious OHRB, which is highly dependent on the presence of proper growth niches and microbial interactions. In this study, based on two ecological principles (i.e., Priority Effects and Coexistence Theory), three strategies were developed to enhance niche colonization of OHRB, which were tested both in laboratory experiments and field applications: (i) preinoculation of a niche-preparing culture (NPC, being mainly constituted of fermenting bacteria and methanogens); (ii) staggered fermentation; and (iii) increased inoculation of CE40 (a Dehalococcoides-containing tetrachloroethene-to-ethene dechlorinating enrichment culture). Batch experimental results show significantly higher dechlorination efficiencies, as well as lower concentrations of volatile fatty acids (VFAs) and methane, in experimental sets with staggered fermentation and niche-preconditioning with NPC for 4 days (CE40_NPC-4) relative to control sets. Accordingly, a comparatively higher abundance of Dehalococcoides as major OHRB, together with a lower abundance of fermenting bacteria and methanogens, was observed in CE40_NPC-4 with staggered fermentation, which indicated the balanced syntrophic and competitive interactions between OHRB and other populations for the efficient dechlorination. Further experiments with microbial source tracking analyses suggested enhanced colonization of OHRB by increasing the inoculation ratio of CE40. The optimized conditions for enhanced colonization of OHRB were successfully employed for field bioremediation of trichloroethene (TCE, 0.3-1.4 mM)- and vinyl chloride (VC, ∼0.04 mM)-contaminated sites, resulting in 96.6% TCE and 99.7% VC dechlorination to ethene within 5 and 3 months, respectively. This study provides ecological principles-guided strategies for efficient bioremediation of chloroethene-contaminated sites, which may be also employed for removal of other emerging organohalide pollutants.
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Affiliation(s)
- Rifeng Wu
- School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-Sen University, Guangzhou 510006, China
| | - Rui Shen
- School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-Sen University, Guangzhou 510006, China
| | - Zhiwei Liang
- School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-Sen University, Guangzhou 510006, China
| | - Shengzhi Zheng
- China State Science Dingshi Environmental Engineering Co., Ltd., Beijing 100102, China
| | - Yong Yang
- China State Science Dingshi Environmental Engineering Co., Ltd., Beijing 100102, China
| | - Qihong Lu
- School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-Sen University, Guangzhou 510006, China
| | - Lorenz Adrian
- Environmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Permoserstraße 15, 04318 Leipzig, Germany
- Chair of Geobiotechnology, Technische Universität Berlin, Ackerstraße 76, 13355 Berlin, Germany
| | - Shanquan Wang
- School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-Sen University, Guangzhou 510006, China
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31
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Romantschuk M, Lahti-Leikas K, Kontro M, Galitskaya P, Talvenmäki H, Simpanen S, Allen JA, Sinkkonen A. Bioremediation of contaminated soil and groundwater by in situ biostimulation. Front Microbiol 2023; 14:1258148. [PMID: 38029190 PMCID: PMC10658714 DOI: 10.3389/fmicb.2023.1258148] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Accepted: 09/22/2023] [Indexed: 12/01/2023] Open
Abstract
Bioremediation by in situ biostimulation is an attractive alternative to excavation of contaminated soil. Many in situ remediation methods have been tested with some success; however, due to highly variable results in realistic field conditions, they have not been implemented as widely as they might deserve. To ensure success, methods should be validated under site-analogous conditions before full scale use, which requires expertise and local knowledge by the implementers. The focus here is on indigenous microbial degraders and evaluation of their performance. Identifying and removing biodegradation bottlenecks for degradation of organic pollutants is essential. Limiting factors commonly include: lack of oxygen or alternative electron acceptors, low temperature, and lack of essential nutrients. Additional factors: the bioavailability of the contaminating compound, pH, distribution of the contaminant, and soil structure and moisture, and in some cases, lack of degradation potential which may be amended with bioaugmentation. Methods to remove these bottlenecks are discussed. Implementers should also be prepared to combine methods or use them in sequence. Chemical/physical means may be used to enhance biostimulation. The review also suggests tools for assessing sustainability, life cycle assessment, and risk assessment. To help entrepreneurs, decision makers, and methods developers in the future, we suggest founding a database for otherwise seldom reported unsuccessful interventions, as well as the potential for artificial intelligence (AI) to assist in site evaluation and decision-making.
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Affiliation(s)
- Martin Romantschuk
- Faculty of Biological and Environmental Sciences, University of Helsinki, Lahti, Finland
| | - Katariina Lahti-Leikas
- Faculty of Biological and Environmental Sciences, University of Helsinki, Lahti, Finland
| | - Merja Kontro
- Faculty of Biological and Environmental Sciences, University of Helsinki, Lahti, Finland
| | | | - Harri Talvenmäki
- Faculty of Biological and Environmental Sciences, University of Helsinki, Lahti, Finland
| | - Suvi Simpanen
- Faculty of Biological and Environmental Sciences, University of Helsinki, Lahti, Finland
| | - John A. Allen
- Faculty of Biological and Environmental Sciences, University of Helsinki, Lahti, Finland
| | - Aki Sinkkonen
- Natural Resources Institute Finland (Luke), Horticulture Technologies, Turku, Finland
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Shahid M, Khan MS, Singh UB. Pesticide-tolerant microbial consortia: Potential candidates for remediation/clean-up of pesticide-contaminated agricultural soil. ENVIRONMENTAL RESEARCH 2023; 236:116724. [PMID: 37500042 DOI: 10.1016/j.envres.2023.116724] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2023] [Revised: 07/16/2023] [Accepted: 07/21/2023] [Indexed: 07/29/2023]
Abstract
Reclamation of pesticide-polluted lands has long been a difficult endeavour. The use of synthetic pesticides could not be restricted due to rising agricultural demand. Pesticide toxicity has become a pressing agronomic problem due to its adverse impact on agroecosystems, agricultural output, and consequently food security and safety. Among different techniques used for the reclamation of pesticide-polluted sites, microbial bioremediation is an eco-friendly approach, which focuses on the application of resilient plant growth promoting rhizobacteria (PGPR) that may transform or degrade chemical pesticides to innocuous forms. Such pesticide-resilient PGPR has demonstrated favourable effects on soil-plant systems, even in pesticide-contaminated environments, by degrading pesticides, providing macro-and micronutrients, and secreting active but variable secondary metabolites like-phytohormones, siderophores, ACC deaminase, etc. This review critically aims to advance mechanistic understanding related to the reduction of phytotoxicity of pesticides via the use of microbe-mediated remediation techniques leading to crop optimization in pesticide-stressed soils. The literature surveyed and data presented herein are extremely useful, offering agronomists-and crop protectionists microbes-assisted remedial strategies for affordably enhancing crop productivity in pesticide-stressed soils.
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Affiliation(s)
- Mohammad Shahid
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms (NBAIM), Kushmaur, Mau Nath Bhanjan, 275103, UP, India; Department of Agricultural Microbiology, Faculty of Agriculture Science, Aligarh Muslim University (A.M.U.), Aligarh, 202001, UP, India.
| | - Mohammad Saghir Khan
- Department of Agricultural Microbiology, Faculty of Agriculture Science, Aligarh Muslim University (A.M.U.), Aligarh, 202001, UP, India
| | - Udai B Singh
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms (NBAIM), Kushmaur, Mau Nath Bhanjan, 275103, UP, India
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Wang H, Feyereisen GW, Wang P, Rosen C, Sadowsky MJ, Ishii S. Impacts of biostimulation and bioaugmentation on woodchip bioreactor microbiomes. Microbiol Spectr 2023; 11:e0405322. [PMID: 37747182 PMCID: PMC10581000 DOI: 10.1128/spectrum.04053-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Accepted: 07/26/2023] [Indexed: 09/26/2023] Open
Abstract
IMPORTANCE Nitrate pollution is a serious problem in agricultural areas in the U.S. Midwest and other parts of the world. Woodchip bioreactor is a promising technology that uses microbial denitrification to remove nitrate from agricultural subsurface drainage, although the reactor's nitrate removal performance is limited under cold conditions. This study showed that the inoculation of cold-adapted denitrifiers (i.e., bioaugmentation) and the addition of labile carbon (i.e., biostimulation) can influence the microbial populations and enhance the reactor's performance under cold conditions. This finding will help establish a strategy to mitigate nitrate pollution.
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Affiliation(s)
- Hao Wang
- Department of Soil, Water, and Climate, University of Minnesota, St. Paul, Minnesota, USA
| | - Gary W. Feyereisen
- USDA-ARS Soil and Water Management Research Unit, St. Paul, Minnesota, USA
| | - Ping Wang
- BioTechnology Institute, University of Minnesota, St. Paul, Minnesota, USA
| | - Carl Rosen
- Department of Soil, Water, and Climate, University of Minnesota, St. Paul, Minnesota, USA
| | - Michael J. Sadowsky
- Department of Soil, Water, and Climate, University of Minnesota, St. Paul, Minnesota, USA
- BioTechnology Institute, University of Minnesota, St. Paul, Minnesota, USA
| | - Satoshi Ishii
- Department of Soil, Water, and Climate, University of Minnesota, St. Paul, Minnesota, USA
- BioTechnology Institute, University of Minnesota, St. Paul, Minnesota, USA
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34
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Lei Q, Zhong J, Chen SF, Wu S, Huang Y, Guo P, Mishra S, Bhatt K, Chen S. Microbial degradation as a powerful weapon in the removal of sulfonylurea herbicides. ENVIRONMENTAL RESEARCH 2023; 235:116570. [PMID: 37423356 DOI: 10.1016/j.envres.2023.116570] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 06/25/2023] [Accepted: 07/05/2023] [Indexed: 07/11/2023]
Abstract
Sulfonylurea herbicides have been widely used worldwide and play a significant role in modern agricultural production. However, these herbicides have adverse biological effects that can damage the ecosystems and harm human health. As such, rapid and effective techniques that remove sulfonylurea residues from the environment are urgently required. Attempts have been made to remove sulfonylurea residues from environment using various techniques such as incineration, adsorption, photolysis, ozonation, and microbial degradation. Among them, biodegradation is regarded as a practical and environmentally responsible way to eliminate pesticide residues. Microbial strains such as Talaromyces flavus LZM1, Methylopila sp. SD-1, Ochrobactrum sp. ZWS16, Staphylococcus cohnii ZWS13, Enterobacter ludwigii sp. CE-1, Phlebia sp. 606, and Bacillus subtilis LXL-7 can almost completely degrade sulfonylureas. The degradation mechanism of the strains is such that sulfonylureas can be catalyzed by bridge hydrolysis to produce sulfonamides and heterocyclic compounds, which deactivate sulfonylureas. The molecular mechanisms associated with microbial degradation of sulfonylureas are relatively poorly studied, with hydrolase, oxidase, dehydrogenase and esterase currently known to play a pivotal role in the catabolic pathways of sulfonylureas. Till date, there are no reports specifically on the microbial degrading species and biochemical mechanisms of sulfonylureas. Hence, in this article, the degradation strains, metabolic pathways, and biochemical mechanisms of sulfonylurea biodegradation, along with its toxic effects on aquatic and terrestrial animals, are discussed in depth in order to provide new ideas for remediation of soil and sediments polluted by sulfonylurea herbicides.
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Affiliation(s)
- Qiqi Lei
- National Key Laboratory of Green Pesticide, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, 510642, China; Guangdong Laboratory for Lingnan Modern Agriculture, College of Plant Protection, South China Agricultural University, Guangzhou, 510642, China
| | - Jianfeng Zhong
- National Key Laboratory of Green Pesticide, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, 510642, China; Guangdong Laboratory for Lingnan Modern Agriculture, College of Plant Protection, South China Agricultural University, Guangzhou, 510642, China
| | - Shao-Fang Chen
- National Key Laboratory of Green Pesticide, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, 510642, China; Guangdong Laboratory for Lingnan Modern Agriculture, College of Plant Protection, South China Agricultural University, Guangzhou, 510642, China
| | - Siyi Wu
- National Key Laboratory of Green Pesticide, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, 510642, China; Guangdong Laboratory for Lingnan Modern Agriculture, College of Plant Protection, South China Agricultural University, Guangzhou, 510642, China
| | - Yaohua Huang
- National Key Laboratory of Green Pesticide, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, 510642, China; Guangdong Laboratory for Lingnan Modern Agriculture, College of Plant Protection, South China Agricultural University, Guangzhou, 510642, China
| | - Peng Guo
- Zhongshan City Garden Management Center of Guangdong Province, Zhongshan, China
| | - Sandhya Mishra
- Environmental Technologies Division, CSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow, 226001, India
| | - Kalpana Bhatt
- Department of Food Science, Purdue University, West Lafayette, IN, USA.
| | - Shaohua Chen
- National Key Laboratory of Green Pesticide, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, 510642, China; Guangdong Laboratory for Lingnan Modern Agriculture, College of Plant Protection, South China Agricultural University, Guangzhou, 510642, China.
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35
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Rodriguez KND, Santos RT, Nagpala MJM, Opulencia RB. Metataxonomic Characterization of Enriched Consortia Derived from Oil Spill-Contaminated Sites in Guimaras, Philippines, Reveals Major Role of Klebsiella sp. in Hydrocarbon Degradation. Int J Microbiol 2023; 2023:3247448. [PMID: 37790200 PMCID: PMC10545452 DOI: 10.1155/2023/3247448] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Revised: 08/21/2023] [Accepted: 09/07/2023] [Indexed: 10/05/2023] Open
Abstract
Oil spills are major anthropogenic disasters that cause serious harm to marine environments. In the Philippines, traditional methods of rehabilitating oil-polluted areas were proven to be less efficient and cause further damage to the environment. Microbial degradation has poised itself to be a promising alternative to those traditional methods in remediating oil spills. Hence, the present study aimed to enrich and characterize hydrocarbon-degrading microbial consortia from oil-contaminated regions in Guimaras Island for potential use in bioremediation. A total of 75 soil samples were obtained and used as inoculum for the enrichment for hydrocarbon degraders. Afterwards, 32 consortia were recovered and subjected to the 2,6-DCPIP assay for biodegradation ability on four types of hydrocarbons: diesel, xylene, hexane, and hexadecane. The consortia that obtained the highest percent degradation for each of the four hydrocarbons were "B2" (92.34% diesel degraded), "A5" (85.55% hexadecane degraded), "B1" (74.33% hexane degraded), and "B7" (63.38% xylene degraded). Illumina MiSeq 16S rRNA gene amplicon sequencing revealed that the dominant phyla in all consortia are Pseudomonadota (previously Proteobacteria), followed by Bacillota (previously Firmicutes). Overall, the amplicon sequence variants (ASVs) retrieved were mainly from the Gammaproteobacteria class, in which many hydrocarbon-degrading bacteria are found. Predictive functional profiling of the consortium showed the presence of genes involved in the degradation of recalcitrant hydrocarbon pollutants. Fatty acid metabolism, which includes alkB (alkane-1-monooxygenase) and genes for beta oxidation, was inferred to be the most abundant amongst all hydrocarbon degradation pathways. Klebsiella sp. is the predominant ASV in all the sequenced consortia as well as the major contributor of hydrocarbon degradation genes. The findings of the study can serve as groundwork for the development of hydrocarbon-degrading bacterial consortia for the bioremediation of oil spill-affected areas in the Philippines. Likewise, this paper provides a basis for further investigation into the role of Klebsiella sp. in the bioremediation of hydrocarbon pollutants.
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Affiliation(s)
| | - Russel T. Santos
- Genetics and Molecular Biology Division, Institute of Biological Sciences, University of the Philippines Los Baños, College, Laguna 4031, Los Baños, Philippines
| | - Michael Joseph M. Nagpala
- Microbiology Division, Institute of Biological Sciences, University of the Philippines Los Baños, College, Laguna 4031, Los Baños, Philippines
| | - Rina B. Opulencia
- Microbiology Division, Institute of Biological Sciences, University of the Philippines Los Baños, College, Laguna 4031, Los Baños, Philippines
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Lee S, Cho M, Sadowsky MJ, Jang J. Denitrifying Woodchip Bioreactors: A Microbial Solution for Nitrate in Agricultural Wastewater-A Review. J Microbiol 2023; 61:791-805. [PMID: 37594681 DOI: 10.1007/s12275-023-00067-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 07/04/2023] [Accepted: 07/05/2023] [Indexed: 08/19/2023]
Abstract
Nitrate (NO3-) is highly water-soluble and considered to be the main nitrogen pollutants leached from agricultural soils. Its presence in aquatic ecosystems is reported to cause various environmental and public health problems. Bioreactors containing microbes capable of transforming NO3- have been proposed as a means to remediate contaminated waters. Woodchip bioreactors (WBRs) are continuous flow, reactor systems located below or above ground. Below ground systems are comprised of a trench filled with woodchips, or other support matrices. The nitrate present in agricultural drainage wastewater passing through the bioreactor is converted to harmless dinitrogen gas (N2) via the action of several bacteria species. The WBR has been suggested as one of the most cost-effective NO3--removing strategy among several edge-of-field practices, and has been shown to successfully remove NO3- in several field studies. NO3- removal in the WBR primarily occurs via the activity of denitrifying microorganisms via enzymatic reactions sequentially reducing NO3- to N2. While previous woodchip bioreactor studies have focused extensively on its engineering and hydrological aspects, relatively fewer studies have dealt with the microorganisms playing key roles in the technology. This review discusses NO3- pollution cases originating from intensive farming practices and N-cycling microbial metabolisms which is one biological solution to remove NO3- from agricultural wastewater. Moreover, here we review the current knowledge on the physicochemical and operational factors affecting microbial metabolisms resulting in removal of NO3- in WBR, and perspectives to enhance WBR performance in the future.
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Affiliation(s)
- Sua Lee
- Division of Biotechnology and Advanced Institute of Environment and Bioscience, Jeonbuk National University, Iksan, Jeonbuk, 54596, Republic of Korea
| | - Min Cho
- Division of Biotechnology and Advanced Institute of Environment and Bioscience, Jeonbuk National University, Iksan, Jeonbuk, 54596, Republic of Korea
| | - Michael J Sadowsky
- BioTechnology Institute, Department of Soil, Water and Climate, and Department of Microbial and Plant Biology, University of Minnesota, St. Paul, MN, 55108, USA
| | - Jeonghwan Jang
- Division of Biotechnology and Advanced Institute of Environment and Bioscience, Jeonbuk National University, Iksan, Jeonbuk, 54596, Republic of Korea.
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Diaz-Vanegas C, Héry M, Desoeuvre A, Bruneel O, Joulian C, Jacob J, Battaglia-Brunet F, Casiot C. Towards an understanding of the factors controlling bacterial diversity and activity in semi-passive Fe- and As-oxidizing bioreactors treating arsenic-rich acid mine drainage. FEMS Microbiol Ecol 2023; 99:fiad089. [PMID: 37632198 DOI: 10.1093/femsec/fiad089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Revised: 07/12/2023] [Accepted: 08/22/2023] [Indexed: 08/27/2023] Open
Abstract
Semi-passive bioreactors based on iron and arsenic oxidation and coprecipitation are promising for the treatment of As-rich acid mine drainages. However, their performance in the field remains variable and unpredictable. Two bioreactors filled with distinct biomass carriers (plastic or a mix of wood and pozzolana) were monitored during 1 year. We characterized the dynamic of the bacterial communities in these bioreactors, and explored the influence of environmental and operational drivers on their diversity and activity. Bacterial diversity was analyzed by 16S rRNA gene metabarcoding. The aioA genes and transcripts were quantified by qPCR and RT-qPCR. Bacterial communities were dominated by several iron-oxidizing genera. Shifts in the communities were attributed to operational and physiochemical parameters including the nature of the biomass carrier, the water pH, temperature, arsenic, and iron concentrations. The bioreactor filled with wood and pozzolana showed a better resilience to disturbances, related to a higher bacterial alpha diversity. We evidenced for the first time aioA expression in a treatment system, associated with the presence of active Thiomonas spp. This confirmed the contribution of biological arsenite oxidation to arsenic removal. The resilience and the functional redundancy of the communities developed in the bioreactors conferred robustness and stability to the treatment systems.
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Affiliation(s)
- Camila Diaz-Vanegas
- HydroSciences Montpellier, University of Montpellier, CNRS, IRD, Montpellier, France
- French Geological Survey (BRGM), Water, Environment, Process and Analyses Division, Orléans, France
| | - Marina Héry
- HydroSciences Montpellier, University of Montpellier, CNRS, IRD, Montpellier, France
| | - Angélique Desoeuvre
- HydroSciences Montpellier, University of Montpellier, CNRS, IRD, Montpellier, France
| | - Odile Bruneel
- HydroSciences Montpellier, University of Montpellier, CNRS, IRD, Montpellier, France
| | - Catherine Joulian
- French Geological Survey (BRGM), Water, Environment, Process and Analyses Division, Orléans, France
| | - Jérôme Jacob
- French Geological Survey (BRGM), Water, Environment, Process and Analyses Division, Orléans, France
| | | | - Corinne Casiot
- HydroSciences Montpellier, University of Montpellier, CNRS, IRD, Montpellier, France
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38
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Sánchez Mata O, Aguilera Flores MM, Ureño García BG, Ávila Vázquez V, Cabañas García E, Franco Villegas EA. Bioremediation of Automotive Residual Oil-Contaminated Soils by Biostimulation with Enzymes, Surfactant, and Vermicompost. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2023; 20:6600. [PMID: 37623183 PMCID: PMC10454165 DOI: 10.3390/ijerph20166600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 07/28/2023] [Accepted: 08/16/2023] [Indexed: 08/26/2023]
Abstract
Contamination of soils by automotive residual oil represents a global environmental problem. Bioremediation is the technology most suitable to remove this contaminant from the medium. Therefore, this work aimed to evaluate the effectiveness of bioremediation of automotive residual oil-contaminated soils by biostimulation with enzymes, surfactant, and vermicompost. The bioremediation efficiency was examined using a factorial design of 24 to determine the effect of the time, pH and temperature conditions, biostimulation with enzyme-vermicompost, and biostimulation with enzyme-surfactant. Enzymes obtained from Ricinus communis L. seeds, commercial vermicompost, and Triton X-100 were used. Results showed that the highest removal efficiency (99.9%) was achieved at 49 days, with a pH of 4.5, temperature of 37 °C, and using biostimulation with enzyme-vermicompost (3% w/v-5% w/w). The addition of surfactant was not significant in increasing the removal efficiency. Therefore, the results provide adequate conditions to bioremediate automotive residual oil-contaminated soils by biostimulation using enzymes supported with vermicompost.
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Affiliation(s)
- Omar Sánchez Mata
- Interdisciplinary Professional Unit of Engineering, Campus Zacatecas, Instituto Politécnico Nacional, Blvd. del Bote 202 Cerro del Gato Ejido La Escondida, Col. Ciudad Administrativa, Zacatecas 98160, Mexico (V.Á.V.)
| | - Miguel Mauricio Aguilera Flores
- Interdisciplinary Professional Unit of Engineering, Campus Zacatecas, Instituto Politécnico Nacional, Blvd. del Bote 202 Cerro del Gato Ejido La Escondida, Col. Ciudad Administrativa, Zacatecas 98160, Mexico (V.Á.V.)
| | - Brenda Gabriela Ureño García
- Interdisciplinary Professional Unit of Engineering, Campus Zacatecas, Instituto Politécnico Nacional, Blvd. del Bote 202 Cerro del Gato Ejido La Escondida, Col. Ciudad Administrativa, Zacatecas 98160, Mexico (V.Á.V.)
| | - Verónica Ávila Vázquez
- Interdisciplinary Professional Unit of Engineering, Campus Zacatecas, Instituto Politécnico Nacional, Blvd. del Bote 202 Cerro del Gato Ejido La Escondida, Col. Ciudad Administrativa, Zacatecas 98160, Mexico (V.Á.V.)
| | - Emmanuel Cabañas García
- Scientific and Technological Studies Center No. 18, Instituto Politécnico Nacional, Blvd. del Bote 202 Cerro del Gato Ejido La Escondida, Col. Ciudad Administrativa, Zacatecas 98160, Mexico
| | - Efrén Alejandro Franco Villegas
- Interdisciplinary Professional Unit of Engineering, Campus Zacatecas, Instituto Politécnico Nacional, Blvd. del Bote 202 Cerro del Gato Ejido La Escondida, Col. Ciudad Administrativa, Zacatecas 98160, Mexico (V.Á.V.)
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Champramary S, Indic B, Szűcs A, Tyagi C, Languar O, Hasan KMF, Szekeres A, Vágvölgyi C, Kredics L, Sipos G. The mycoremediation potential of the armillarioids: a comparative genomics analysis. Front Bioeng Biotechnol 2023; 11:1189640. [PMID: 37662429 PMCID: PMC10470841 DOI: 10.3389/fbioe.2023.1189640] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2023] [Accepted: 08/03/2023] [Indexed: 09/05/2023] Open
Abstract
Genes involved in mycoremediation were identified by comparative genomics analysis in 10 armillarioid species and selected groups of white-rot Basidiomycota (14) and soft-rot Ascomycota (12) species to confine the distinctive bioremediation capabilities of the armillarioids. The genomes were explored using phylogenetic principal component analysis (pPCA), searching for genes already documented in a biocatalysis/biodegradation database. The results underlined a distinct, increased potential of aromatics-degrading genes/enzymes in armillarioids, with particular emphasis on a high copy number and diverse spectrum of benzoate 4-monooxygenase [EC:1.14.14.92] homologs. In addition, other enzymes involved in the degradation of various monocyclic aromatics were more abundant in the armillarioids than in the other white-rot basidiomycetes, and enzymes involved in the degradation of polycyclic aromatic hydrocarbons (PAHs) were more prevailing in armillarioids and other white-rot species than in soft-rot Ascomycetes. Transcriptome profiling of A. ostoyae and A. borealis isolates confirmed that several genes involved in the degradation of benzoates and other monocyclic aromatics were distinctively expressed in the wood-invading fungal mycelia. Data were consistent with armillarioid species offering a more powerful potential in degrading aromatics. Our results provide a reliable, practical solution for screening the likely fungal candidates for their full biodegradation potential, applicability, and possible specialization based on their genomics data.
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Affiliation(s)
- Simang Champramary
- Functional Genomics and Bioinformatics Group, Institute of Forest and Natural Resource Management, Faculty of Forestry, University of Sopron, Sopron, Hungary
- Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary
| | - Boris Indic
- Functional Genomics and Bioinformatics Group, Institute of Forest and Natural Resource Management, Faculty of Forestry, University of Sopron, Sopron, Hungary
| | - Attila Szűcs
- Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary
| | - Chetna Tyagi
- Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary
| | - Omar Languar
- Functional Genomics and Bioinformatics Group, Institute of Forest and Natural Resource Management, Faculty of Forestry, University of Sopron, Sopron, Hungary
- Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary
| | - K. M. Faridul Hasan
- Fibre and Nanotechnology Program, Faculty of Wood Engineering and Creative Industries, University of Sopron, Sopron, Hungary
| | - András Szekeres
- Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary
| | - Csaba Vágvölgyi
- Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary
| | - László Kredics
- Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary
| | - György Sipos
- Functional Genomics and Bioinformatics Group, Institute of Forest and Natural Resource Management, Faculty of Forestry, University of Sopron, Sopron, Hungary
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Leskovac A, Petrović S. Pesticide Use and Degradation Strategies: Food Safety, Challenges and Perspectives. Foods 2023; 12:2709. [PMID: 37509801 PMCID: PMC10379487 DOI: 10.3390/foods12142709] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Revised: 07/11/2023] [Accepted: 07/13/2023] [Indexed: 07/30/2023] Open
Abstract
While recognizing the gaps in pesticide regulations that impact consumer safety, public health concerns associated with pesticide contamination of foods are pointed out. The strategies and research directions proposed to prevent and/or reduce pesticide adverse effects on human health and the environment are discussed. Special attention is paid to organophosphate pesticides, as widely applied insecticides in agriculture, veterinary practices, and urban areas. Biotic and abiotic strategies for organophosphate pesticide degradation are discussed from a food safety perspective, indicating associated challenges and potential for further improvements. As food systems are endangered globally by unprecedented challenges, there is an urgent need to globally harmonize pesticide regulations and improve methodologies in the area of food safety to protect human health.
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Affiliation(s)
- Andreja Leskovac
- Vinca Institute of Nuclear Sciences-National Institute of the Republic of Serbia, University of Belgrade, M. Petrovića Alasa 12-14, 11000 Belgrade, Serbia
| | - Sandra Petrović
- Vinca Institute of Nuclear Sciences-National Institute of the Republic of Serbia, University of Belgrade, M. Petrovića Alasa 12-14, 11000 Belgrade, Serbia
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Ridene S, Werfelli N, Mansouri A, Landoulsi A, Abbes C. Bioremediation potential of consortium Pseudomonas Stutzeri LBR and Cupriavidus Metallidurans LBJ in soil polluted by lead. PLoS One 2023; 18:e0284120. [PMID: 37319245 PMCID: PMC10270627 DOI: 10.1371/journal.pone.0284120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2022] [Accepted: 03/23/2023] [Indexed: 06/17/2023] Open
Abstract
Pollution by lead (Pb) is an environmental and health threat due to the severity of its toxicity. Microbial bioremediation is an eco-friendly technique used to remediate contaminated soils. This present study was used to evaluate the effect of two bacterial strains isolated and identified from Bizerte lagoon: Cupriavidus metallidurans LBJ (C. metallidurans LBJ) and Pseudomonas stutzeri LBR (P. stutzeri LBR) on the rate of depollution of soil contaminated with Pb from Tunisia. To determine this effect, sterile and non-sterile soil was bioaugmented by P. stutzeri LBR and C. metallidurans LBJ strains individually and in a mixture for 25 days at 30°C. Results showed that the bioaugmentation of the non-sterile soil by the mixture of P. stutzeri LBR and C. metallidurans LBJ strains gave the best rate of reduction of Pb of 71.02%, compared to a rate of 58.07% and 46.47% respectively for bioaugmentation by the bacterial strains individually. In the case of the sterile soil, results showed that the reduction rate of lead was in the order of 66.96% in the case of the mixture of the two bacterial strains compared with 55.66% and 41.86% respectively for the addition of the two strains individually. These results are confirmed by analysis of the leachate from the sterile and non-sterile soil which showed an increase in the mobility and bioavailability of Pb in soil. These promising results offer another perspective for a soil bioremediation bioprocess applying bacterial bioremediation.
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Affiliation(s)
- Sirine Ridene
- University of Carthage, Biochemistry and Molecular Biology Laboratory of Faculty of Sciences of Bizerte, Risks Related to Environmental Stress, Struggle and Prevention (UR17ES20), Bizerte, Zarzouna, Tunisia
| | - Naima Werfelli
- International Center For Environmental Technologies, Boulevard Leader Yasser Arafat, Tunis, Tunisia
| | - Ahlem Mansouri
- University of Carthage, Biochemistry and Molecular Biology Laboratory of Faculty of Sciences of Bizerte, Risks Related to Environmental Stress, Struggle and Prevention (UR17ES20), Bizerte, Zarzouna, Tunisia
| | - Ahmed Landoulsi
- University of Carthage, Biochemistry and Molecular Biology Laboratory of Faculty of Sciences of Bizerte, Risks Related to Environmental Stress, Struggle and Prevention (UR17ES20), Bizerte, Zarzouna, Tunisia
| | - Chiraz Abbes
- University of Carthage, Biochemistry and Molecular Biology Laboratory of Faculty of Sciences of Bizerte, Risks Related to Environmental Stress, Struggle and Prevention (UR17ES20), Bizerte, Zarzouna, Tunisia
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Zhang B, Xu W, Ma Y, Gao X, Ming H, Jia J. Effects of bioaugmentation by isolated Achromobacter xylosoxidans BP1 on PAHs degradation and microbial community in contaminated soil. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 334:117491. [PMID: 36801800 DOI: 10.1016/j.jenvman.2023.117491] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2022] [Revised: 02/02/2023] [Accepted: 02/09/2023] [Indexed: 06/18/2023]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are a group of organic pollutants ubiquitous and persistent in soil. In order to provide a viable solution for bioremediation of PAHs-contaminated soil, a strain of Achromobacter xylosoxidans BP1 with superior PAHs degradation ability was isolated from contaminated soil at a coal chemical site in northern China. The degradation of phenanthrene (PHE) and benzo[a]pyrene (BaP) by strain BP1 was investigated in three different liquid phase cultures, and the removal rates of PHE and BaP by strain BP1 were 98.47% and 29.86% after 7 days under the conditions of PHE and BaP as the only carbon source, respectively. In the medium with the coexistence of PHE and BaP, the removal rates of BP1 were 89.44% and 9.42% after 7 days, respectively. Then, strain BP1 was investigated for its feasibility in remediating PAH-contaminated soil. Among the four PAHs-contaminated soils treated differently, the treatment inoculated with BP1 exhibited higher removal rates of PHE and BaP (p < 0.05), especially the CS-BP1 treatment (inoculation of BP1 into unsterilized PAHs-contaminated soil) showed 67.72%, 13.48% removal of PHE and BaP, respectively, over 49 days of incubation. Bioaugmentation also significantly increased the activity of dehydrogenase and catalase in the soil (p<0.05). Furthermore, the effect of bioaugmentation on the removal of PAHs was investigated by measuring the activity of dehydrogenase (DH) and catalase (CAT) during incubation. Among them, the DH and CAT activities of CS-BP1 and SCS-BP1 (inoculation of BP1 into sterilized PAHs-contaminated soil) treatments inoculated with strain BP1 were significantly higher than those of treatments without BP1 addition during incubation (p < 0.01). The structure of the microbial community varied among treatments, but the Proteobacteria phylum showed the highest relative abundance in all treatments of the bioremediation process, and most of the bacteria with higher relative abundance at the genus level also belonged to the Proteobacteria phylum. Prediction of microbial functions in soil by FAPROTAX analysis showed that bioaugmentation enhanced microbial functions associated with the degradation of PAHs. These results demonstrate the effectiveness of Achromobacter xylosoxidans BP1 as a PAH-contaminated soil degrader for the risk control of PAHs contamination.
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Affiliation(s)
- Ben Zhang
- School of Chemical and Environmental Engineering, China University of Mining & Technology (Beijing), Beijing, 100083, PR China
| | - Wei Xu
- School of Chemical and Environmental Engineering, China University of Mining & Technology (Beijing), Beijing, 100083, PR China
| | - Yichi Ma
- School of Chemical and Environmental Engineering, China University of Mining & Technology (Beijing), Beijing, 100083, PR China
| | - Xiaolong Gao
- School of Chemical and Environmental Engineering, China University of Mining & Technology (Beijing), Beijing, 100083, PR China
| | - Huyang Ming
- School of Chemical and Environmental Engineering, China University of Mining & Technology (Beijing), Beijing, 100083, PR China
| | - Jianli Jia
- School of Chemical and Environmental Engineering, China University of Mining & Technology (Beijing), Beijing, 100083, PR China.
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Lara-Moreno A, Merchán F, Morillo E, Zampolli J, Di Gennaro P, Villaverde J. Genome analysis for the identification of genes involved in phenanthrene biodegradation pathway in Stenotrophomonas indicatrix CPHE1. Phenanthrene mineralization in soils assisted by integrated approaches. Front Bioeng Biotechnol 2023; 11:1158177. [PMID: 37214282 PMCID: PMC10192627 DOI: 10.3389/fbioe.2023.1158177] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Accepted: 04/14/2023] [Indexed: 05/24/2023] Open
Abstract
Phenanthrene (PHE) is a highly toxic compound, widely present in soils. For this reason, it is essential to remove PHE from the environment. Stenotrophomonas indicatrix CPHE1 was isolated from an industrial soil contaminated by polycyclic aromatic hydrocarbons (PAHs) and was sequenced to identify the PHE degrading genes. Dioxygenase, monooxygenase, and dehydrogenase gene products annotated in S. indicatrix CPHE1 genome were clustered into different trees with reference proteins. Moreover, S. indicatrix CPHE1 whole-genome sequences were compared to genes of PAHs-degrading bacteria retrieved from databases and literature. On these basis, reverse transcriptase-polymerase chain reaction (RT-PCR) analysis pointed out that cysteine dioxygenase (cysDO), biphenyl-2,3-diol 1,2-dioxygenase (bphC), and aldolase hydratase (phdG) were expressed only in the presence of PHE. Therefore, different techniques have been designed to improve the PHE mineralization process in five PHE artificially contaminated soils (50 mg kg-1), including biostimulation, adding a nutrient solution (NS), bioaugmentation, inoculating S. indicatrix CPHE1 which was selected for its PHE-degrading genes, and the use of 2-hydroxypropyl-β-cyclodextrin (HPBCD) as a bioavailability enhancer. High percentages of PHE mineralization were achieved for the studied soils. Depending on the soil, different treatments resulted to be successful; in the case of a clay loam soil, the best strategy was the inoculation of S. indicatrix CPHE1 and NS (59.9% mineralized after 120 days). In sandy soils (CR and R soils) the highest percentage of mineralization was achieved in presence of HPBCD and NS (87.3% and 61.3%, respectively). However, the combination of CPHE1 strain, HPBCD, and NS showed to be the most efficient strategy for sandy and sandy loam soils (LL and ALC soils showed 35% and 74.6%, respectively). The results indicated a high degree of correlation between gene expression and the rates of mineralization.
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Affiliation(s)
- Alba Lara-Moreno
- Department of Agrochemistry, Environmental Microbiology and Soil Conservation, Institute of Natural Resources and Agrobiology of Seville, Spanish National Research Council (IRNAS-CSIC), Seville, Spain
- Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Seville, Seville, Spain
| | - Francisco Merchán
- Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Seville, Seville, Spain
| | - Esmeralda Morillo
- Department of Agrochemistry, Environmental Microbiology and Soil Conservation, Institute of Natural Resources and Agrobiology of Seville, Spanish National Research Council (IRNAS-CSIC), Seville, Spain
| | - Jessica Zampolli
- Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milano, Italy
| | - Patrizia Di Gennaro
- Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milano, Italy
| | - Jaime Villaverde
- Department of Agrochemistry, Environmental Microbiology and Soil Conservation, Institute of Natural Resources and Agrobiology of Seville, Spanish National Research Council (IRNAS-CSIC), Seville, Spain
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Kumar J, Sharma N, Singh SP. Genome-resolved metagenomics inferred novel insights into the microbial community, metabolic pathways, and biomining potential of Malanjkhand acidic copper mine tailings. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:50864-50882. [PMID: 36807860 DOI: 10.1007/s11356-023-25893-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Accepted: 02/08/2023] [Indexed: 04/16/2023]
Abstract
Mine tailing sites provide profound opportunities to elucidate the microbial mechanisms involved in ecosystem functioning. In the present study, metagenomic analysis of dumping soil and adjacent pond around India's largest copper mine at Malanjkhand has been done. Taxonomic analysis deciphered the abundance of phyla Proteobacteria, Bacteroidetes, Acidobacteria, and Chloroflexi. Genomic signatures of viruses were predicted in the soil metagenome, whereas Archaea and Eukaryotes were noticed in water samples. Mesophilic chemolithotrophs, such as Acidobacteria bacterium, Chloroflexi bacterium, and Verrucomicrobia bacterium, were predominant in soil, whereas, in the water sample, the abundance of Methylobacterium mesophilicum, Pedobacter sp., and Thaumarchaeota archaeon was determined. The functional potential analysis highlighted the abundance of genes related to sulfur, nitrogen, methane, ferrous oxidation, carbon fixation, and carbohydrate metabolisms. The genes for copper, iron, arsenic, mercury, chromium, tellurium, hydrogen peroxide, and selenium resistance were found to be predominant in the metagenomes. Metagenome-assembled genomes (MAGs) were constructed from the sequencing data, indicating novel microbial species genetically related to the phylum predicted through whole genome metagenomics. Phylogenetic analysis, genome annotations, functional potential, and resistome analysis showed the resemblance of assembled novel MAGs with traditional organisms used in bioremediation and biomining applications. Microorganisms harboring adaptive mechanisms, such as detoxification, hydroxyl radical scavenging, and heavy metal resistance, could be the potent benefactions for their utility as bioleaching agents. The genetic information produced in the present investigation provides a foundation for pursuing and understanding the molecular aspects of bioleaching and bioremediation applications.
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Affiliation(s)
- Jitesh Kumar
- Center of Innovative and Applied Bioprocessing, Department of Biotechnology (DBT), Govt. of India, S.A.S. Nagar, Sector-81, (Knowledge City) Mohali, 140306, India
| | - Nitish Sharma
- Center of Innovative and Applied Bioprocessing, Department of Biotechnology (DBT), Govt. of India, S.A.S. Nagar, Sector-81, (Knowledge City) Mohali, 140306, India
| | - Sudhir P Singh
- Center of Innovative and Applied Bioprocessing, Department of Biotechnology (DBT), Govt. of India, S.A.S. Nagar, Sector-81, (Knowledge City) Mohali, 140306, India.
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Muter O. Current Trends in Bioaugmentation Tools for Bioremediation: A Critical Review of Advances and Knowledge Gaps. Microorganisms 2023; 11:710. [PMID: 36985282 PMCID: PMC10056695 DOI: 10.3390/microorganisms11030710] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Revised: 03/06/2023] [Accepted: 03/08/2023] [Indexed: 03/12/2023] Open
Abstract
Bioaugmentation is widely used in soil bioremediation, wastewater treatment, and air biofiltration. The addition of microbial biomass to contaminated areas can considerably improve their biodegradation performance. Nevertheless, analyses of large data sets on the topic available in literature do not provide a comprehensive view of the mechanisms responsible for inoculum-assisted stimulation. On the one hand, there is no universal mechanism of bioaugmentation for a broad spectrum of environmental conditions, contaminants, and technology operation concepts. On the other hand, further analyses of bioaugmentation outcomes under laboratory conditions and in the field will strengthen the theoretical basis for a better prediction of bioremediation processes under certain conditions. This review focuses on the following aspects: (i) choosing the source of microorganisms and the isolation procedure; (ii) preparation of the inoculum, e.g., cultivation of single strains or consortia, adaptation; (iii) application of immobilised cells; (iv) application schemes for soil, water bodies, bioreactors, and hydroponics; and (v) microbial succession and biodiversity. Reviews of recent scientific papers dating mostly from 2022-2023, as well as our own long-term studies, are provided here.
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Affiliation(s)
- Olga Muter
- Faculty of Biology, University of Latvia, LV-1004 Riga, Latvia
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Kwak E, Kim JH, Choi JW, Lee S. Injection strategy for effective bacterial delivery in bioaugmentation scheme by controlling ionic strength and pore-water velocity. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 328:116971. [PMID: 36516708 DOI: 10.1016/j.jenvman.2022.116971] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Revised: 11/23/2022] [Accepted: 12/03/2022] [Indexed: 06/17/2023]
Abstract
For the in-situ remediation of the contaminated subsurface environment, the injection of nutrients and microorganisms changes chemical and physical conditions, which control the delivery and immobilization of microorganisms. We investigated the injection strategy for effective bacterial delivery in a bioaugmentation scheme by controlling ionic strength (IS) and pore-water velocity (v). A set of bacterial transport tests was conducted using the saturated sand column to mimic the saturated subsurface environment. The effectiveness of the injection strategies was evaluated by applying solutions with different ionic strengths into the sand column with different pore-water velocities. The deposition and delivery of bacteria through the sand column were analyzed using the first-order deposition model. The deposition and delivery of bacteria injected by various strategies were numerically simulated considering the variable deposition rate. The breakthrough curves from column experiments revealed that the bacterial deposition on the sand surface was increased by an increase in the ionic strength and by a decrease in the pore-water velocities. The rates of bacterial deposition (k1) on sand could be determined as a function of ionic strength and pore-water velocity, and it was applicable to simulate the delivery of bacteria under dynamic groundwater conditions. The numerical case study considering various injection strategies showed that the nutrient concentration controlled the bacterial delivery to the target area more significantly than the injection flow rate. Injection of bacterial solution with lower nutrient concentration could be increased the deposited bacterial concentration at the target point (Stp) by 6.2-7.1 times higher. Short pulse injection with a high injection rate decreased Stp by 67-78%. The efficiency of bacterial delivery (Ed) could be increased three times higher by lowering nutrient concentration in the injection solution. The process of evaluating the efficiency of bacterial delivery could be a prominent approach to determining the injection strategy for in-situ remediation considering variable conditions of a contaminated site.
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Affiliation(s)
- Eunjie Kwak
- Department of Earth and Environmental Sciences, Korea University, 145, Anam-ro, Seongbuk-gu, Seoul, 02841, Republic of Korea.
| | - Jae-Hyun Kim
- Department of Earth and Environmental Sciences, Korea University, 145, Anam-ro, Seongbuk-gu, Seoul, 02841, Republic of Korea.
| | - Jae-Woo Choi
- Center for Water Resource Cycle Research, Korea Institute of Science and Technology, Hwarangno 14-gil 5, Seongbuk-gu, Seoul, 02792, Republic of Korea.
| | - Soonjae Lee
- Department of Earth and Environmental Sciences, Korea University, 145, Anam-ro, Seongbuk-gu, Seoul, 02841, Republic of Korea.
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Shen Y, Ji Y, Wang W, Gao T, Li H, Xiao M. Temporal effect of phytoremediation on the bacterial community in petroleum-contaminated soil. HUMAN AND ECOLOGICAL RISK ASSESSMENT: AN INTERNATIONAL JOURNAL 2023; 29:427-448. [DOI: 10.1080/10807039.2022.2102460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 06/20/2022] [Accepted: 07/13/2022] [Indexed: 03/06/2025]
Affiliation(s)
- Yuanyuan Shen
- College of Biological and Environmental Engineering, Xi’an University, Xi’an, China
| | - Yu Ji
- School of Water and Environment, Chang’an University, Xi’an, China
| | - Wenke Wang
- School of Water and Environment, Chang’an University, Xi’an, China
| | - Tianpeng Gao
- College of Biological and Environmental Engineering, Xi’an University, Xi’an, China
| | - Haijuan Li
- College of Biological and Environmental Engineering, Xi’an University, Xi’an, China
| | - Mingyan Xiao
- College of Biological and Environmental Engineering, Xi’an University, Xi’an, China
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48
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Zhang W, Zhang H, Xu R, Qin H, Liu H, Zhao K. Heavy metal bioremediation using microbially induced carbonate precipitation: Key factors and enhancement strategies. Front Microbiol 2023; 14:1116970. [PMID: 36819016 PMCID: PMC9932936 DOI: 10.3389/fmicb.2023.1116970] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Accepted: 01/16/2023] [Indexed: 02/05/2023] Open
Abstract
With the development of economy, heavy metal (HM) contamination has become an issue of global concern, seriously threating animal and human health. Looking for appropriate methods that decrease their bioavailability in the environment is crucial. Microbially induced carbonate precipitation (MICP) has been proposed as a promising bioremediation method to immobilize contaminating metals in a sustainable, eco-friendly, and energy saving manner. However, its performance is always affected by many factors in practical application, both intrinsic and external. This paper mainly introduced ureolytic bacteria-induced carbonate precipitation and its implements in HM bioremediation. The mechanism of HM immobilization and in-situ application strategies (that is, biostimulation and bioaugmentation) of MICP are briefly discussed. The bacterial strains, culture media, as well as HMs characteristics, pH and temperature, etc. are all critical factors that control the success of MICP in HM bioremediation. The survivability and tolerance of ureolytic bacteria under harsh conditions, especially in HM contaminated areas, have been a bottleneck for an effective application of MICP in bioremediation. The effective strategies for enhancing tolerance of bacteria to HMs and improving the MICP performance were categorized to provide an in-depth overview of various biotechnological approaches. Finally, the technical barriers and future outlook are discussed. This review may provide insights into controlling MICP treatment technique for further field applications, in order to enable better control and performance in the complex and ever-changing environmental systems.
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Affiliation(s)
- Wenchao Zhang
- School of Chemistry and Life Sciences, Suzhou University of Science and Technology, Suzhou, China,*Correspondence: Wenchao Zhang,
| | - Hong Zhang
- Frontiers Science Center for Synthetic Biology, Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology, Tianjin University, Tianjin, China
| | - Ruyue Xu
- School of Chemistry and Life Sciences, Suzhou University of Science and Technology, Suzhou, China
| | - Haichen Qin
- School of Chemistry and Life Sciences, Suzhou University of Science and Technology, Suzhou, China
| | - Hengwei Liu
- School of Chemistry and Life Sciences, Suzhou University of Science and Technology, Suzhou, China
| | - Kun Zhao
- Sichuan Provincial People’s Hospital, University of Electronic Science and Technology of China, Chengdu, China,Insitute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China
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Kalneniece K, Gudra D, Lielauss L, Selga T, Fridmanis D, Terauds J, Muter O. Batch-mode stimulation of hydrocarbons biodegradation in freshwater sediments from historically contaminated Alūksne lake. JOURNAL OF CONTAMINANT HYDROLOGY 2023; 253:104103. [PMID: 36435695 DOI: 10.1016/j.jconhyd.2022.104103] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2022] [Revised: 09/30/2022] [Accepted: 11/01/2022] [Indexed: 06/16/2023]
Abstract
Historical contamination of freshwater lakes with hydrocarbons (HC) due to anthropogenic activities represents a serious problem worldwide. This study was focused on hydrocarbons-contaminated sediments sampled in Lake Alūksne of glacial origin in Northeast Latvia. The batch experiments were aimed at evaluating the effect of bio-stimulation and bioaugmentation on the biodegradation of hydrocarbons in lake sediments (LS), as well as changes in microbial community structure and metabolic activity. The sediments were sampled from two points of the lake, 4-5 m and 8 m depth, respectively. These samples slightly differed by colour, count of diatoms, microbial respiration intensity and colour intensity of 2,6- dichlorophenolindophenol. Nevertheless, the trend in biodegradation activity was similar for both LS samples. The concentration of HC in LS during the 32-day incubation decreased in average from 465 mg/kg to 165 mg/kg and 117.5 mg/kg in the LS amended with nutrients and nutrients+microbial community, respectively. Different treatment types of LS resulted in differences in microbial respiration and HC-degrading activity. The Shotgun sequencing has revealed the main phyla present in the intact LS being Proteobacteria (48.8%), Actinobacteria (24.4%), Firmicutes (10.4%) and Bacteroidetes (5.0%). Incubation of LS for 32 days resulted in increasing abundance of Proteobacteria from 48.8% in the raw LS to 58-62%, mainly due to the increase of Betaproteobacteria. The functional annotation of gene families revealed that the most abundant gene families were associated with ATP binding, metal ion, magnesium ion, sulfur cluster, zinc ion binding, DNA binding and other essential components for cell functioning. The Shannon biodiversity index of culturable microorganisms in EcoPlates™ ranged from 2.28 to 2.85. The data obtained in this study indicated that the suggested approach is a potent remediation technology for further ex situ scaling up.
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Affiliation(s)
- Kristine Kalneniece
- Department of Microbiology & Biotechnology, Faculty of Biology, University of Latvia, 1 Jelgavas Str., Riga LV-1004, Latvia
| | - Dita Gudra
- Latvian Biomedical Research and Study Center, 1 Ratsupites Str., Riga LV-1067, Latvia
| | - Ludvigs Lielauss
- Baltijas Juras Geologijas Centrs Ltd., 67A Ieriku Str., LV-1084 Riga, Latvia
| | - Turs Selga
- Faculty of Medicine, University of Latvia, 1 Jelgavas Str., Riga LV-1004, Latvia
| | - Davids Fridmanis
- Latvian Biomedical Research and Study Center, 1 Ratsupites Str., Riga LV-1067, Latvia
| | - Janis Terauds
- Baltijas Juras Geologijas Centrs Ltd., 67A Ieriku Str., LV-1084 Riga, Latvia
| | - Olga Muter
- Department of Microbiology & Biotechnology, Faculty of Biology, University of Latvia, 1 Jelgavas Str., Riga LV-1004, Latvia.
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Udume OA, Abu GO, Stanley HO, Vincent-Akpu IF, Momoh Y, Eze MO. Biostimulation of Petroleum-Contaminated Soil Using Organic and Inorganic Amendments. PLANTS (BASEL, SWITZERLAND) 2023; 12:plants12030431. [PMID: 36771516 PMCID: PMC9921818 DOI: 10.3390/plants12030431] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 01/03/2023] [Accepted: 01/10/2023] [Indexed: 06/01/2023]
Abstract
The most common approaches for the in-situ bioremediation of contaminated sites worldwide are bioaugmentation and biostimulation. Biostimulation has often proved more effective for chronically contaminated sites. This study examined the effectiveness of optimized water hyacinth compost in comparison with other organic and inorganic amendments for the remediation of crude oil-polluted soils. Water hyacinth was found to be rich in nutrients necessary to stimulate microbial growth and activity. An organic geochemical analysis revealed that all amendments in this study increased total petroleum hydrocarbon (TPH) biodegradation by ≥75% within 56 days, with the greatest biodegradation (93%) occurring in sterilized soil inoculated with optimized water hyacinth compost. This was followed by polluted soil amended with a combination of spent mushroom and water hyacinth composts (SMC + WH), which recorded a TPH biodegradation of 89%. Soil amendment using the inorganic fertilizer NPK (20:10:10) resulted in 86% TPH biodegradation. On the other hand, control samples (natural attenuation) recorded only 4% degradation. A molecular analysis of residual polycyclic aromatic hydrocarbons (PAHs) showed that the 16 PAHs designated by the US EPA as priority pollutants were either completely or highly degraded in the combined treatment (SMC + WH), indicating the potential of this amendment for the environmental remediation of soils contaminated with recalcitrant organic pollutants.
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Affiliation(s)
- Ogochukwu A. Udume
- Department of Microbiology, Faculty of Science, University of Port Harcourt, Port Harcourt 500004, Rivers State, Nigeria
| | - Gideon O. Abu
- Department of Microbiology, Faculty of Science, University of Port Harcourt, Port Harcourt 500004, Rivers State, Nigeria
| | - Herbert O. Stanley
- Department of Microbiology, Faculty of Science, University of Port Harcourt, Port Harcourt 500004, Rivers State, Nigeria
| | - Ijeoma F. Vincent-Akpu
- Department of Animal and Environmental Biology, Faculty of Science, University of Port Harcourt, Port Harcourt 500004, Rivers State, Nigeria
| | - Yusuf Momoh
- Department of Environmental Engineering, Faculty of Engineering, University of Port Harcourt, Port Harcourt 500004, Rivers State, Nigeria
| | - Michael O. Eze
- Department of Genomic and Applied Microbiology and Göttingen Genomics Laboratory, Georg-August University of Göttingen, 37077 Göttingen, Germany
- Bioinstrumentation and BioMEMS Laboratory, Department of Mechanical and Aerospace Engineering, University of California, Davis, CA 95616, USA
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