Environmental risks caused by livestock and poultry farms to the soils: Comparison of swine, chicken, and cattle farms

Patho-physiological effects of environmental relevant concentrations of lufenuron in male Japanese quails

The widespread utilization of synthetic chemicals contaminates the land and water environments. The present investigation determined the effects of sub-lethal concentrations of lufenuron in the male Japanese quail. The birds exposed to lufenuron showed the clinical signs of behavioral, digestive, nervous and reproductive upsets. The drug significantly (p < 0.05) decreased the feed intake, body weight, absolute and relative weights of visceral organs (kidneys, liver, brain, heart, testes), RBCs count, HCT, Hg concentration, serum proteins and anti-oxidants enzymes (SOD, CAT, LPO, GSH) while concentrations of hepatic, cardiac and renal biomarkers were significantly (p < 0.05) increased in the birds treated with higher doses (15 mg/kg and 20 mg/kg) of lufenuron, in a time and dose dependent manner. Comet assay revealed significantly (p < 0.05) increased frequency of DNA damage in the isolated cells of liver, kidneys and intestine along with a significant (p < 0.05) increased frequency of micronucleus in the erythrocytes. The visceral organs showed prominent histo-pathological ailments in the birds exposed to higher doses of lufenuron. Our study is the first comprehensive report that demonstrates the significant physio-biochemical health effects of lufenuron on complete clinico-hematological parameters of free ranging fauna (quail) of the natural ecosystem, even at sub-lethal environment relevant concentrations.

Analysis of antibiotic resistance genes in livestock manure and receiving environment reveals non-negligible risk from extracellular genes

Antibiotic resistance genes (ARGs), extracellular and intracellular, collectively constitute the complete resistome within farming environments. However, a systematic analysis of extracellular ARGs (eARGs) and intracellular ARGs (iARGs) remains missing. This study characterized eARGs and iARGs in livestock manure and examined their effects on the agricultural soil receiving them. The findings indicated differences in DNA concentration and the ratios of iDNA and eDNA across various manures, with chicken manure demonstrating the highest eDNA levels (20.7-22.7%). Different ARG subtypes had distinct pollution levels in livestock manure. Generally, except for blaTEM-1 and blaOXA-1, ermC, ermB, and cfr, other ARGs were abundant in eDNA (beyond 104 copies per g DW in each sample) and iDNA (beyond 107 copies per g DW) of animal manure. The copy numbers of eARGs and iARGs differed in different manures, with swine manure having the highest, ranging from 6.08 × 103 to 4.30 × 108 and from 3.21 × 107 to 9.51 × 1010 copies per g DW, respectively. Both iARGs and eARGs were more abundant in soil when manure was applied. The impacts of the various manures varied, with chicken manure having the most significant influence. Interestingly, several eARGs were much more abundant in soil than their intracellular counterparts, highlighting the need to regulate and manage both eARGs and iARGs.

Enhanced remediation of co-contaminated agricultural soils under cold stress by immobilized bacterial agents: A perspective based on abundance differences

This study explored the enhanced remediation effects and microbial mechanisms of the immobilized microbial agent B&Ma19, compared to the microbial agent Ma19, in cold-region farmland co-contaminated with antibiotics and heavy metals during winter. B&Ma19 achieved superior fluoroquinolone degradation and significantly reduced the bioavailability of copper and zinc, while Ma19 treatment only reduced the content of available zinc. Microbial community analysis revealed that B&Ma19 promoted the proliferation of Firmicutes and increased the relative abundance of rare taxa during the freeze-thaw and freezing phases. Functional predictions indicated that B&Ma19 enhanced the expression of proteins in the winter microbial community involved in resistance to antibiotics, metabolic activity, and nutrient acquisition capacity. A random forest model identified Sporosarcina as a potential key genus for co-contamination remediation. Moreover, increased in overall community dispersal limitation and reduced drift-driven succession were observed. The co-occurrence network became more stable, characterized by a higher proportion of moderately abundant keystone taxa. Mantel tests showed that B&Ma19 weakened the correlation between antibiotic resistance genes (ARGs) and mobile genetic elements, and reduced the impact of temperature fluctuations on contaminant concentrations. In contrast, Ma19 strengthened ARG-antibiotic associations. These findings provide a theoretical basis for bioremediation of co-contaminated farmland in cold regions.

Underestimated Cumulative Intake Risk of Veterinary Antibiotics Across Multiple Matrices within a Coupled Breeding-Cropping Model

The coupled breeding-cropping model has been increasingly applied in organic agriculture due to its high resource efficiency; however, the environmental risks of veterinary antibiotics within the solid-liquid-biological system remain unclear. This study focused on a typical poultry-crop system and investigated the migration patterns of enrofloxacin (ENX), ciprofloxacin (CIP), oxytetracycline (OTC), doxycycline (DOX), and florfenicol (FF) in manure, drain, paddy soil, and agricultural products. A strong source-sink relationship was established, with paddy soil identified as the primary reservoir, retaining over 40.1% of the total emissions. The migration behavior of antibiotics in the soil-rice system was primarily influenced by their organic carbon-normalized distribution coefficients, ionization forms, and soil organic carbon contents. Importantly, the cumulative risk of the five antibiotics was 1.4-828 times higher, exceeding risk thresholds by 13.9-fold. These findings emphasize the underestimated cumulative risks of mixed antibiotic use in agroecosystems.

The combined effects of tetracycline and glyphosate on growth and rhizosphere bacteria community in hulless barley over the whole growth period

The toxic effects of tetracycline and glyphosate on hulless barley and its environment, as well as their interrelationship, remain poorly understood. The present study aimed to identify biomarkers reflective of tetracycline and glyphosate toxicity, examine root damage and rhizosphere bacterial communities throughout the growth cycle, and assess the final grain quality. Results indicated that the hydrogen peroxide (H2O2) content in the underground parts of barley could serve as a sensitive biomarker for detecting tetracycline and glyphosate toxicity in barley. In addition, a synergistic effect between 5 mg/kg tetracycline and 5 mg/kg glyphosate was observed at the tillering stage, which not only induced H2O2 accumulation across all growth stages but also ultimately reduced seed quality. During the tillering phase, Proteobacteria dominanted, while Actinobacteria showed greater relative abundance during the jointing stage.By the ripening stage, Acidobacteria predominantly colonized the associated soils. Importantly, the study further identified metagenome-assembled genomes containing cytochrome P450 fragments capable of metabolizing these compounds. This study provides novel insights into the transformation of co-contaminants and the adaptive responses of rhizobacteria to tetracycline and glyphosate exposure, offering valuable information for agricultural practices.

Copper and zinc removal from anaerobic digestates via Sporosarcina pasteurii induced precipitation: Effect of volatile fatty acids on process performance

Microbial induced carbonate precipitation (MICP) shows great potential for metals recovery from secondary sources, which is vital for circular economy. This study explores the feasibility of using Sporosarcina pasteurii for MICP to recover copper (Cu) and zinc (Zn) from acidogenic anaerobic digestates at laboratory scale. Pre-cultured S. pasteurii was inoculated into solutions containing 20 g L-1 of urea and varying concentrations of Cu and Zn (0-25 mg L-1). The system was maintained at 30 °C with continuous agitation for seven days to assess Cu and Zn removal at initial pH values of 5, 6 and 7. The influence of volatile fatty acids (VFAs) on urea hydrolysis and Cu and Zn removal via S. pasteurii-induced MICP was evaluated by adding 3 g COD L-1 of acetic and propionic acids to metal solutions. Results showed that S. pasteurii enhanced Cu and Zn removal, with yields varying from 22% to 100% depending on the initial pH. In the presence of VFAs, Cu and Zn removal was significantly reduced (p < 0.05), however, only S. pasteurii-incubated samples exhibited Cu and Zn removal, indicating exclusive biological-driven removal. The primary mechanisms of action inferred for Cu and Zn removal in VFAs-spiked samples involved urea hydrolysis, which increased local pH and facilitated metals precipitation, as well as the adsorption of metal ions onto the negatively charged S. pasteurii cell wall. This study demonstrates the potential of S. pasteurii to enhance Cu and Zn removal from VFAs-containing media paving the way for a sustainable metals recovery alternative from waste streams.

Inoculation with effective microorganisms agent enhanced fungal diversity in the secondary fermentation process

Microbial inoculations have emerged as a key approach to address the low natural microbial activity of traditional composting technologies. It is crucial for successfully promoting manure composting to understand the influences of microbial inoculations on fungal communities and its mechanisms. To investigate the effects of microbial inoculation on diversity characteristics, tropic mode, and co-occurrence network of fungal communities during composting, an aerobic composting experiment of chicken manure inoculated with microbial agents was performed. The results showed that microbial inoculations enhanced fungal richness and diversity during the secondary fermentation, promoted beneficial fungi, and restrained pathogenic microbes. Microbial inoculation facilitated saprophytic fungi and symbiotic fungi, augmented fungal network complexity and cooperation during the first fermentation, concurrently impeding fungal network complexity and cooperation during the secondary fermentation. These results provide technical guidance for composting process optimization and compost product quality improving, which was beneficial to promote soil quality and mitigating agricultural non-point source pollution.

Emerging antibiotic and heavy metal resistance in spore-forming bacteria from pig manure, manure slurry and fertilized soil

Spore-forming bacteria (SFB), like Bacillus, are the gram-positive bacteria with broad-spectrum activity that is one of the commonly used strains of probiotics. However, these bacteria also have significant resistance. In this study, we systematically investigated pig manure, manure slurry and soil by 16S rRNA high-throughput sequencing and traditional culture techniques. We found the SFB was widespread in manure, manure slurry and soil, Firmicutes was one of the main dominant phyla in pig manure, manure slurry and soil, the relative abundance of Bacillus were 0.98%, 0.01%, and 2.57%, respectively, and metals such as copper have complex relationships with bacteria. We isolated 504 SFB from 369 samples, with the highest number identified as Bacillus subtilis. SFB strains showed varying degrees of antibiotic resistance; the greatest against erythromycin, followed by imipenem. The MICs of SFB varied greatly against different heavy metals; with high (est) resistance against Zn2+, followed by Cu2+. Second-generation whole genome sequencing (WGS) revealed that nine Bacillus strains carried different subtypes of vancomycin resistance genes, among which vanRM had the highest frequency. The strain W129 included the vanRA-vanRM-vanSA-vanZF cluster. The nine Bacillus strains also contained antibiotic genes such as aminoglycoside (ant(9)-Ia), β-lactam (bcII), and macrolide (msrE). Twenty-six Bacillus isolates carried copper resistance clusters, including csoR-copZ, copA-copZ-csoR, and copZ-copA. WGS showed that strain W166 carried 11 vancomycin resistance genes and 11 copper resistance genes. There were 4 vancomycin resistance genes and 14 copper resistance genes on the W129 chromosome. Strain W129 also harbors the plasmid pLKYM01 that contains an intact transposon consisting of insertion sequence and vancomycin resistance genes vanYF and vanRA. This study explores the potential risks of using pig manure and fertilized soil to inform safe and effective use of probiotics in agriculture. It highlights scientific evidence for concern over the safe utilization and control of animal waste products.

Distribution pattern analysis of multiple antibiotics in the soil-rice system using a QuEChERS extraction method

Antibiotics are commonly released into paddy fields as mixtures via human activities. However, the simultaneous extraction and detection of these chemicals from multiple media are technically challenging due to their different physicochemical properties, resulting in unclear patterns of their transport in the soil-rice system. In this study, a "quick, easy, cheap, effective, rugged, and safe" (QuEChERS) method was developed for the simultaneous analysis of 4 tetracyclines (TCs) and 4 fluoroquinolones (FQs) in the soil and rice tissues from a local poultry farm, and thereby the distribution patterns of the target antibiotics in the soil-rice system and their risk levels to the soil were analyzed. After parameter optimization, the calibration range used for the target antibiotics was 0.1-50 μg/L and each calibration curve was linear with a coefficient of determination (R2 > 0.995); The QuEChERS method achieved satisfactory recovery rates (70.3-124.6%) along with sensitive detection limits (0.005-0.21 ng/g) for TCs and FQs in the soil, root, stem, leaf, and grain. Among the 8 antibiotics, enrofloxacin (ENX), ciprofloxacin (CIP), oxytetracycline (OTC), and doxycycline (DOX) were detected around a poultry farm. The four antibiotics in the collected paddy soils around the poultry farm ranged from 7.1 ng/g to 395.5 ng/g. Notably, ENX and DOX had higher ecological risks (risk quotient values >1) than CIP and OTC in soil. ENX, CIP, and DOX were highly enriched in rice roots with concentrations up to 471.9, 857.3, and 547.4 ng/g, respectively, which were also detected in rice aboveground tissues. The findings may provide both technical and practical guidance for the understanding of antibiotic environmental behavior and risks.

Impact of Temperature Elevation on Microbial Communities and Antibiotic Degradation in Cold Region Soils of Northeast China

This study systematically investigated the effects of temperature changes on the degradation of antibiotics in soil, as well as the alterations in microbial community structure and aggregation, through a field warming experiment in a greenhouse. Compared to non-warming soil, the warming treatment significantly accelerated the degradation rate of tetracyclines during soil freezing and mitigated the impact of environmental fluctuations on soil microbial communities. The greenhouse environment promoted the growth and reproduction of a wide range of microbial taxa, but the abundance of Myxococcota was positively correlated with antibiotic concentrations in both treatments, suggesting a potential specific association with antibiotic degradation processes. Long-term warming in the greenhouse led to a shift in the assembly process of soil microbial communities, with a decrease in dispersal limitation and an increase in the drift process. Furthermore, co-occurrence network analysis revealed a more loosely structured microbial community in the greenhouse soil, along with the emergence of new characteristic taxa. Notably, more than 60% of the key taxa that connected the co-occurrence networks in both groups belonged to rare taxa, indicating that rare taxa play a crucial role in maintaining community structure and function.

Optimized combination of zero-valent iron and oxygen-releasing biochar as cathodes of microbial fuel cells to enhance copper migration in sediment

Membrane-less single-medium sediment microbial fuel cells (single-SMFC) can remove Cu2+ from sediment through electromigration. However, the high mass transfer resistance of the sediment and amount of oxygen at the cathode of the SMFC limit its Cu2+ removal ability. Therefore, this study used an oxygen-releasing bead (ORB) for slow oxygen release to increase oxygen at the SMFC cathode and improve the mass transfer property of the sediment. Resultantly, the copper removal efficiency of SMFC increased significantly. Response surface methodology was used to optimize the nano zero-valent iron (nZVI)-modified biochar as the catalyst to enhance the ability of the modified ORB (ORBm) to remove Cu2+ and slow release of O2. The maximum Cu2+ removal (95 %) and the slowest O2 release rate (0.41 mg O2/d·g ORBm) were obtained when the CaO2 content and ratio of nZVI-modified biochar to unmodified biochar were 0.99 g and 4.95, respectively. When the optimized ORBm was placed at the single-SMFC cathode, the voltage output and copper removal increased by 4.6 and 2.1 times, respectively, compared with the system without ORBm. This shows that the ORBm can improve the migration of Cu2+ in the sediment, providing a promising remediation method for Cu-contaminated sediments.

Coupling effects of aureomycin and zinc ion on nitrification process and nitrification enzymes during the biological nitrogen removal

Aureomycin and Zinc ion (Zn2+) are common antibiotics and heavy metals that exist in livestock wastewater. The coupling effects of Aureomycin and Zn2+ on the nitrification process and nitrification function enzymes are crucial for controlling nitrogen removal in livestock wastewater. However, rare studies were focused on the coupling effects of Aureomycin and Zn2+ on nitrification. This study employed a direct equipartition ray method to investigate the coupling effects of Aureomycin and Zn2+ on nitrification. The results suggested three different ratios of Aureomycin and Zn2+ affected nitrification performance differently. Ratio 1 and Ratio 2 exhibited a promotion effect with low concentrations and an inhibition effect with high concentrations on nitrification performance. The critical concentration for Ratio 1 and Ratio 2 were 5.00 mg L-1 and 1.90 mg L-1, respectively. Ratio 3 exhibited both time-dependent and concentration-dependent inhibitory effects on nitrification performance. The maximum inhibitory efficiency on nitrification performance was 90.0%, with a concentration of 34.5 mg L-1 at 96.0 h. The effects of binary mixture on nitrogen removal performance were attributed to the effects of binary mixture on nitrite oxidase activity. The qualitative evaluation of the concentration addition model and independent action model indicated Aureomycin and Zn2+ showed a synergistic effect with strong concentration-dependent and time-dependent in the whole concentration area. The synergistic effect of Aureomycin and Zn2+ on nitrite oxidase activity mainly depended on the concentration of Aureomycin. This study offers new insights into the effects of antibiotics and heavy metals on the biological nitrogen removal process.

Cellulosimicrobium sp. Strain L1: A Study on the Optimization of the Conditions and Performance of a Combined Biological Trickling Filter for Hydrogen Sulfide Degradation

Sulfide is a toxic and hazardous substance in the agricultural environment, which can cause damage to humans and livestock when exposed to large amounts of air. In this study, we performed one-factor optimization of the culture conditions and culture fractions of the Cellulosimicrobium sp. strain L1 and combined it with a biological trickling filter cell for the degradation of hydrogen sulfide for 24 consecutive days. The degradation effect of strain L1 and the biological trickling filter (BTF) on hydrogen sulfide was investigated, and the changes in intermediate products in the degradation process were briefly analyzed. The results showed that strain L1 had the highest conversion efficiency when incubated with 3 g/L sucrose as the carbon source and 1 g/L NH4Cl as the nitrogen source at a temperature of 35 °C, an initial pH of 5, and a NaCl concentration of 1%. The concentration of thiosulfate increased and then decreased during the degradation process, and the concentration of sulfate increased continuously. When strain L1 was applied to the biological trickling filter, it could degrade 359.53 mg/m3 of H2S. This study provides a deeper understanding of sulfide degradation in biological trickling filters and helps promote the development of desulfurization technology and the treatment of malodorous gasses produced by the accumulation of large quantities of livestock manure.

Response characteristics and functional predictions of soil microorganisms to heavy metals, antibiotics, and their resistance genes originating from different animal farms amended with Herbaspirillum huttiense

Current understanding is limited regarding technologies that use biochar and microorganisms to simultaneously treat soils contaminated with both veterinary antibiotics (VAs) and heavy metals (HMs) from different animal farms. The contributions of the keystone taxa and their similarities from different animal farms under VA and HM stresses before and after soil remediation should be further investigated as well. An innovative treatment of Herbaspirillum huttiense (HHS1) inoculated waste fungus chaff-based (WFCB) biochar was designed for immobilization of copper (Cu) and zinc (Zn), and the removal of oxytetracycline (OTC), enrofloxacin (ENR), and a subsequent reduction in their resistance genes in soils from pig, cow, and chicken farms. Roles of indigenous microorganisms which can treat soils contaminated with VAs and HMs were summarized. Results showed that available Cu and Zn were reduced by 19.5% and 28.1%, respectively, while 49.8% of OTC and 85.1% of ENR were removed by WFCB-HHS1. The decrease in ENR improved overall microbial community diversity, and the increases in genera HHS1, Pedobacter, Flavobacterium and Aequorivita, along with the decreases of genera Bacillus, Methylobacter, and Fermentimonas were indirectly favorable to treat HMs and VAs in soils from different animal farms. Bacterial communities in different animal farm soils were predominantly influenced by stochastic processes. The regulations of functional genes associated with metabolism and environmental information processing, which contribute to HM and VA defense, were altered when using WFCB-HHS1. Furthermore, the spread of their antibiotic resistance genes was restricted.

Effect of nitrogen retention composite additives Ca(H2PO4)2 and MgSO4 on the degradation of lignocellulose, compost maturation, and fungal communities in compost

This study investigated the effects of the nitrogen retention composite additives Ca(H2PO4)2 and MgSO4 on lignocellulose degradation, maturation, and fungal communities in composts. The study included control (C, without Ca(H2PO4)2 and MgSO4), 1% Ca(H2PO4)2 + 2% MgSO4 (CaPM1), 1.5% Ca(H2PO4)2 + 3% MgSO4 (CaPM2). The results showed that Ca(H2PO4)2 and MgSO4 enhanced the degradation of total organic carbon (TOC) and promoted the degradation of lignocellulose in compost, with CaPM2 showing the highest TOC and lignocellulose degradation. Changes in the three-dimensional excitation-emission matrix fluorescence spectroscopy (3D-EEM) of dissolved organic matter (DOM) components in compost indicated that the treatment group with the addition of Ca(H2PO4)2 and MgSO4 promoted the production of humic acids (HAs) and increased the degree of compost decomposition, with CaPM2 demonstrating the highest degree of decomposition. The addition of Ca(H2PO4)2 and MgSO4 modified the composition of the fungal community. Ca(H2PO4)2 and MgSO4 increased the relative abundance of Ascomycota, decreased unclassified_Fungi, and Glomeromycota, and activated the fungal genera Thermomyces and Aspergillus, which can degrade lignin and cellulose during the thermophilic stage of composting. Ca(H2PO4)2 and MgSO4 also increased the abundance of Saprotroph, particularly undefined Saprotroph. In conclusion, the addition of Ca(H2PO4)2 and MgSO4 in composting activated fungal communities involved in lignocellulose degradation, promoted the degradation of lignocellulose, and enhanced the maturation degree of compost.

In vitro assessment of the bacterial stress response and resistance evolution during multidrug-resistant bacterial invasion of the Xenopus tropicalis intestinal tract under typical stresses

The intestinal microbiome might be both a sink and source of resistance genes (RGs). To investigate the impact of environmental stress on the disturbance of exogenous multidrug-resistant bacteria (mARB) within the indigenous microbiome and proliferation of RGs, an intestinal conjugative system was established to simulate the invasion of mARB into the intestinal microbiota in vitro. Oxytetracycline (OTC) and heavy metals (Zn, Cu, Pb), commonly encountered in aquaculture, were selected as typical stresses for investigation. Adenosine 5'-triphosphate (ATP), hydroxyl radical (OH·-) and extracellular polymeric substance (EPS) were measured to investigate their influence on the acceptance of RGs by intestinal bacteria. The results showed that the transfer and diffusion of RGs under typical combined stressors were greater than those under a single stressor. Combined effect of OTC and heavy metals (Zn, Cu) significantly increased the activity and extracellular EPS content of bacteria in the intestinal conjugative system, increasing intI3 and RG abundance. OTC induced a notable inhibitory response in Citrobacter and exerted the proportion of Citrobacter and Carnobacterium in microbiota. The introduction of stressors stimulates the proliferation and dissemination of RGs within the intestinal environment. These results enhance our comprehension of the typical stresses effect on the RGs dispersal in the intestine.

Antibiotics and microplastics in manure and surrounding soil of farms in the Loess Plateau: Occurrence and correlation

The wide use of animal manure in farmland operations is a source of soil nutrients. However, the return of manure affected antibiotics and microplastics in the soil, thus the potential ecological risks cannot be overlooked. This study investigated the distribution of different antibiotics and microplastics and their correlation. It was found that multiple classes of veterinary antibiotics and microplastics could be detected simultaneously in most manure and soil. In manure, the average concentration of tetracycline antibiotics was higher than fluoroquinolones and sulfonamides. A much lower concentration of antibiotics was found in the soil samples relative to manure. The abundance of microplastics ranged from 21,333 to 88,333 n/kg in manure, and the average abundance was 50,583 ± 24,318 n/kg. The average abundance was 3056 ± 1746 n/kg in the soil. It confirmed that applying organic fertilizer to agricultural soil and the application of plastic mulch in farmlands introduced microplastics. Moreover, microplastics were found to be significantly correlated with antibiotics (r = 0.698, p < 0.001). The correlation between microplastics and antibiotics in soil was significantly weaker than that in manure. Farms could be the hotspot for the co-spread of microplastics and antibiotics. These findings highlighted the co-occurrence of antibiotics and microplastics in agricultural environments.

Multimedia distribution, partitioning, sources, comprehensive toxicity risk and co-occurrence network characteristics of trace elements in a typical Chinese shallow lake with high antibiotic risk

Although the combined pollution of trace elements and antibiotics has received extensive attention, the fate and toxicity risk of trace elements with high antibiotic risk are still unclear. The multimedia distributions, partitioning, sources, toxicity risks and co-occurrence network characteristics of trace elements in surface water (SW), overlying water (OW), pore water (PW) and sediment (Sedi) samples of 61 sites from Baiyangdian (BYD) Lake were investigated. The trace elements in the SW and OW are derived mainly from traffic and agricultural sources, and those in PW and Sedi samples are primarily from lithogenic and industrial sources. The total toxicity risk index (TRI) of nine trace elements (ΣTRI) in Sedi samples showed a very high toxicity risk (18.35 ± 8.84), and a high combined pollution toxicity risk (ΣΣTRI) was observed in PW (149.17 ± 97.52) and Sedi samples (46.37 ± 24.00). The co-occurrence network from SW to PW became more vulnerable. Generally, total antibiotics and TP may be keystones of trace elements in water and sediment. The high antibiotic risk significantly influenced ΣΣTRI in water samples but not in Sedi samples. The findings provide new implications for the monitoring and control of combined antibiotic-trace element pollution in shallow lakes.

Insights into antibiotic and heavy metal resistance interactions in Escherichia coli isolated from livestock manure and fertilized soil

Heavy metal and antibiotic-resistant bacteria from livestock feces are ecological and public health problems. However, the distribution and relationships of antibiotic resistance genes (ARGs), heavy metal resistance genes (HMRGs), and virulence factors (VFs) and their transmission mechanisms remain unclear. Therefore, we investigated the resistance of Escherichia coli, the prevalence of its ARGs, HMRGs, and VFs, and their transmission mechanisms in livestock fresh feces (FF), composted feces (CF), and fertilized soil (FS). In total, 99.54% (n = 221) and 91.44% (n = 203) of E. coli were resistant to at least one antibiotic and one heavy metal, respectively. Additionally, 72.52% (n = 161) were multi-drug resistant (MDR), of which Cu-resistant E. coli accounted for 72.67% (117/161). More than 99.34% (88/89) of E. coli carried multidrug ARGs, VFs, and the Cu resistance genes cueO and cusABCRFS. The Cu resistance genes cueO and cusABCRFS were mainly located on chromosomes, and cueO and cusF were positively associated with HMRGs, ARGs, and VFs. The Cu resistance genes pcoABCDRS were located on the plasmid pLKYL-P02 flanked by ARGs in PF18C from FF group and on chromosomes flanked by HMRGs in SAXZ1-1 from FS group. These results improved our understanding of bacterial multidrug and heavy metal resistance in the environment.

Dynamic distribution of gut microbiota in posthatching chicks and its relationship with average daily gain

The colonization and development of gut microbiota are essential for the health and growth of chicks after hatching. However, the colonization and prevalence of gut microbiota have not been well characterized, and knowledge of which microbes and their relationship with average daily gain in chicks is still limited. This study characterized the dynamic succession of microbiota in the intestinal tract of chicks and investigated its relationship with daily weight gain. A total of 121 fecal samples across 7 time points from d 0 to 10 posthatching were collected from 19 chicks randomly selected from 1,950 chicks. Using 16S rRNA gene sequencing examined microbial composition of fecal samples. The observed species index of alpha diversity increased with age, gradually achieving stability at 3 d of age. The microbiota of chicks after hatching was primarily Clostridium_sensu_stricto_1 (34.49%), and its relative abundance diminishes with age. In contrast, Lactobacillus had a low relative abundance in the first 2 d after hatching and gradually increased with age. Predicted functional capacities found that the microbiota of early-stage posthatching (d 0 and 1 after hatching) was involved in metabolism, including amino acid metabolism, metabolism of cofactors and vitamins, and nitrogen metabolism. However, at the later stage posthatching (from d 3-10 after hatching), the intestinal microbial function was involved in carbohydrate metabolism, amino acid metabolism, cell growth and death, and methane metabolism. It was identified that 47 operational taxonomic units were associated with average daily gain of chicks, 12 of which were annotated with Lactobacillus and significantly positive associated with average daily gain. In addition, Clostridium_sensu_stricto_1 was significantly negatively associated with average daily gain. Taken together, we characterized the dynamic successions of intestinal microbiota in hatching chicks. The intestinal microbiota of chicks has an impact on the host average daily gain. Our findings should be instrumental in improving local chick production.

Identification of livestock farms with potential risk of environmental pollution by using a model for returning livestock manure to cultivated land

Livestock farms produce a large amount of livestock manure, which, if not disposed of properly, will become an environmental pollution source. However, limited research has been conducted on identifying livestock farms with a potential risk of environmental pollution. In this study, a model for returning livestock manure to cultivated land was constructed. Livestock manure was returned to cultivated land, and the amount of surplus livestock manure nutrients, including nitrogen and phosphorus, in livestock farms was calculated with pig manure as an example. Then, livestock farms with a potential risk of environmental pollution in Shanggan Town and part of Xiangqian Town in Fuzhou City were identified using phosphorus as an index. Results showed that the spatial distributions of nitrogen and phosphorus from pig manure in the cultivated land varied. All cultivated lands exhibited the maximum carrying capacity for phosphorus, and 1811 cultivated lands exhibited potential nitrogen carrying capacity. A total of 13,958.997 kg of phosphorus from pig manure in 144 livestock farms could not be disposed to cultivated lands. In all, 144 livestock farms with surplus phosphorus from pig manure were identified as potential environmental pollution sources. These findings can serve as a scientific basis for the utilization of livestock manure, prevention of environmental pollution caused by livestock farms, and layout planning of livestock farms.

Effects of the coexistence of antibiotics and heavy metals on the fate of antibiotic resistance genes in chicken manure and surrounding soils

Both heavy metals and antibiotics exert selection pressure on bacterial resistance, and as they are commonly co-contaminated in the environment, they may play a larger role in bacterial resistance. This study examined how breeding cycles affect antibiotic resistance genes (ARGs) in chicken manure and the surrounding topsoils at 20, 50, 100, 200, and 300 m from twelve typical laying hen farms in the Ningxia Hui Autonomous Region of northwest China. Six antibiotics, seven heavy metals, ten mobile genetic elements (MGEs), and microbial community affected the ARGs profile in chicken dung and soil samples. Tetracycline antibiotic residues were prevalent in chicken manure, as were relatively high content of aureomycin during each culture period. Zinc (Zn) content was highest among the seven heavy metals in chicken feces. Chicken dung also enriched aminoglycosides, MLSB, and tetracycline ARGs, notably during brooding and high production. The farm had a minimal influence on antibiotics in the surrounding soil, but its effect on ARGs and MGEs closer to the farm (50 m) was stronger, and several ARGs and MGEs increased with distance. Manure microbial composition differed dramatically throughout breeding cycles and sampling distances. ARGs were more strongly related with antibiotics and heavy metals in manure than soil, whereas MGEs were the reverse. Antibiotics, heavy metals, MGEs, and bacteria in manure accounted 12.28%, 22.25%, 0.74%, and 0.19% of ARGs composition variance, respectively, according to RDA and VPA. Bacteria (2.89%) and MGEs (2.82%) only affected soil ARGs composition. These findings showed that heavy metals and antibiotics are the main factors affecting faecal ARGs and bacteria and MGEs soil ARGs. This paper includes antibiotic resistance data for large-scale laying hen husbandry in northwest China and a theoretical framework for decreasing antibiotic resistance.

Combined effects of amoxicillin and copper on nitrogen transformation and the microbial mechanisms during aerobic composting of cow manure

Pollutants in livestock manure have a compound effect during aerobic composting, but research to date has focused more on single factors. This study investigated the effects of adding amoxicillin (AMX), copper (Cu) and both (ACu) on nitrogen transformation and the microbial mechanisms in cow manure aerobic composting with wheat straw. In this study, compared with CK, AMX, Cu, and ACu increased NH₃ cumulative emissions by 32.32%, 41.78% and 8.32%, respectively, due to their inhibition of ammonia oxidation. Coexisting AMX and Cu decreased the absolute abundances of amoA/ nxrA genes and increased the absolute abundances of nirS /nosZ genes, but they had an antagonistic effect on the changes in functional gene abundances. Pseudomonas and Luteimonas were enriched during the thermophilic and cooling periods due to the addition of AMX and ACu, which enhanced denitrification in these two groups. Moreover, adding AMX and/or Cu led to more complex bacterial networks, but the effect of the two pollutants was lower than those of the individual pollutants. These findings provide theoretical and experimental support for controlling typical combined pollution with antibiotics and heavy metals in livestock manure.

Effect of composted pig manure, biochar, and their combination on antibiotic resistome dissipation in swine wastewater-treated soil

The prevalence of antibiotic resistance genes (ARGs), owing to irrigation using untreated swine wastewater, in vegetable-cultivated soils around swine farms poses severe threats to human health. Furthermore, at the field scale, the remediation of such soils is still challenging. Therefore, here, we performed field-scale experiments involving the cultivation of Brassica pekinensis in a swine wastewater-treated soil amended with composted pig manure, biochar, or their combination. Specifically, the ARG and mobile genetic element (MGE) profiles of bulk soil (BS), rhizosphere soil (RS), and root endophyte (RE) samples were examined using high-throughput quantitative polymerase chain reaction. In total, 117 ARGs and 22 MGEs were detected. Moreover, we observed that soil amendment using composted pig manure, biochar, or their combination decreased the absolute abundance of ARGs in BS and RE after 90 days of treatment. However, the decrease in the abundance of ARGs in RS was not significant. We also observed that the manure and biochar co-application showed a minimal synergistic effect. To clarify this observation, we performed network and Spearman correlation analyses and used structure equation models to explore the correlations among ARGs, MGEs, bacterial composition, and soil properties. The results revealed that the soil amendments reduced the abundances of MGEs and potential ARG-carrying bacteria. Additionally, weakened horizontal gene transfer was responsible for the dissipation of ARGs. Thus, our results indicate that composted manure application, with or without biochar, is a useful strategy for soil nutrient supplementation and alleviating farmland ARG pollution, providing a justification for using an alternative to the common agricultural practice of treating the soil using only untreated swine wastewater. Additionally, our results are important in the context of soil health for sustainable agriculture.

Comprehensive analysis of the fates and risks of veterinary antibiotics in a small ecosystem comprising a pig farm and its surroundings in Northeast China

This study investigated the behavior of veterinary antibiotics (VAs) in a small farm ecosystem. Manure and environmental samples were collected around a large pig farm in northeast China. Thirty-four VAs in six categories were analyzed. Then, a multimedia fugacity model was used to estimate the fates of VAs in the environment. The results showed that VAs were prevalent in manure, soil, water, and sediment, but not in crops. Compared with fresh manure, VA levels were significantly lower in surface manure piles left in the open air for 3-6 months. The main VAs, tetracyclines and quinolones, decreased by 427.12 and 158.45 µg/kg, respectively. VAs from manure piles were transported to the surroundings and migrated vertically into deep soil. The concentrations of ∑VAs detected in agricultural soils were 0.03-4.60 µg/kg; > 94% of the mass inventory of the VAs was retained in soil organic matter (SOM), suggesting that SOM is the main reservoir for antibiotics in soil. Risk assessment and model analysis indicated that the negative impact of mixed antibiotics at low concentrations in farmland on crops may be mediated by indirect effects, rather than direct effects. Our findings highlight the environmental fates and risks of antibiotics from livestock farms.

Heterogeneous catalysis mediated by light, electricity and enzyme via machine learning: Paradigms, applications and prospects

Energy crisis and environmental pollution have become the bottleneck of human sustainable development. Therefore, there is an urgent need to develop new catalysts for energy production and environmental remediation. Due to the high cost caused by blind screening and limited valuable computing resources, the traditional experimental methods and theoretical calculations are difficult to meet with the requirements. In the past decades, computer science has made great progress, especially in the field of machine learning (ML). As a new research paradigm, ML greatly accelerates the theoretical calculation methods represented by first principal calculation and molecular dynamics, and establish the physical picture of heterogeneous catalytic processes for energy and environment. This review firstly summarized the general research paradigms of ML in the discovery of catalysts. Then, the latest progresses of ML in light-, electricity- and enzyme-mediated heterogeneous catalysis were reviewed from the perspective of catalytic performance, operating conditions and reaction mechanism. The general guidelines of ML for heterogeneous catalysis were proposed. Finally, the existing problems and future development trend of ML in heterogeneous catalysis mediated by light, electricity and enzyme were summarized. We highly expect that this review will facilitate the interaction between ML and heterogeneous catalysis, and illuminate the development prospect of heterogeneous catalysis.

Effects of supplementation of inorganic trace elements with organic trace elements chelated with hydroxy methionine on laying performance, egg quality, blood micronutrients, antioxidant capacity and immune function of laying ducks

Introduction

This study aimed to investigate the effects of organic trace elements chelated with hydroxy methionine (OTE-HM) in diets, which substituted inorganic trace elements, on laying performance, egg quality, blood microelement content, antioxidant capacity and immune function of laying ducks.

Methods

A total of 300 healthy laying ducks at age of 30 wk were randomly divided into 5 treatments and 10 ducks per replicate. The treatments included a control group (CON) which was served with basal diet supplemented with 20 mg/kg Cu, 50 mg/kg Fe, 70 mg/kg Mn, and 70 mg/kg Zn in inorganic form, and 4 OTE-HM treated groups (OTE-HM25, OTE-HM50, OTE-HM75, OTE-HM100) which were served with basal diets supplemented with OTE-HM providing trace elements (combination of Cu, Fe, Mn, Zn) at 25%, 50%, 75% and 100% of the commercial levels, respectively.

Results

Results showed that substitution of inorganic trace elements with OTE-HM did not affect egg production, qualified egg rate, average egg weight, average daily egg mass, average daily feed intake, or feed per kg egg of laying ducks (P &gt; 0.05). Dietary with OTE-HM did not influence eggshell strength, eggshell thickness, egg shape index, eggshell ratio, yolk ratio, albumen ratio, albumen height, and Haugh unit of the sampled eggs of ducks (P &gt; 0.05), but increased the yolk color, compared with dietary with inorganic trace elements (P&lt; 0.01). Moreover, the blood content of Cu of the laying ducks was significantly increased by OTE-HM compared with that in CON (P&lt; 0.001), but the other elements in laying duck blood were not different among treatments (P &gt; 0.05). OTE-HM (75% and 100%) significantly increased serum activities of glutathione peroxidase and Cu-Zn superoxide dismutase, and decreased serum content of malonaldehyde of laying ducks compared with those in CON (P&lt; 0.05). OTE-HM (50%, 75%, and 100%) significantly increased the serum contents of immunoglobulin G and immunoglobulin A of laying ducks compared with those in CON (P&lt; 0.05).

Discussion

Collectively, replacing inorganic trace elements with 50% and 75% OTE-HM in diets did not influence the laying performance or egg quality, but improved trace element efficacy, antioxidant capacity and immune function of the laying ducks.