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For: Danczak RE, Chu RK, Fansler SJ, Goldman AE, Graham EB, Tfaily MM, Toyoda J, Stegen JC. Using metacommunity ecology to understand environmental metabolomes. Nat Commun 2020;11:6369. [PMID: 33311510 DOI: 10.1038/s41467-020-19989-y] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Accepted: 10/29/2020] [Indexed: 12/26/2022]  Open
Number Cited by Other Article(s)
1
Fonvielle J, Thuile Bistarelli L, Tao Y, Woodhouse JN, Shatwell T, Villalba LA, Berger SA, Kyba CCM, Nejstgaard JC, Jechow A, Kupprat F, Stephan S, Walles TJW, Wollrab S, Hölker F, Dittmar T, Gessner MO, Singer GA, Grossart HP. Skyglow increases cyanobacteria abundance and organic matter cycling in lakes. WATER RESEARCH 2025;278:123315. [PMID: 40049093 DOI: 10.1016/j.watres.2025.123315] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2024] [Revised: 12/30/2024] [Accepted: 02/17/2025] [Indexed: 04/14/2025]
2
Wang H, Zhan J, Zhao S, Jiang H, Jia H, Pan Y, Zhong X, Huo J. Sex-induced alterations in rumen microbial communities and metabolite profiles: implications for lamb body weight. BMC Microbiol 2025;25:328. [PMID: 40426040 DOI: 10.1186/s12866-025-04049-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2025] [Accepted: 05/15/2025] [Indexed: 05/29/2025]  Open
3
Hu J, Liu CG, Zhang WK, Liu XW, Dong B, Wang ZD, Xie YG, Hua ZS, Liu XW. Decomposing the molecular complexity and transformation of dissolved organic matter for innovative anaerobic bioprocessing. Nat Commun 2025;16:4859. [PMID: 40414853 DOI: 10.1038/s41467-025-60240-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Accepted: 05/20/2025] [Indexed: 05/27/2025]  Open
4
Chen Y, Cao D, Li X, Jia X, Shi Y, Cai Y. Interactive effects of soil dissolved organic matter (DOM) and Per- and polyfluoroalkyl substances on contaminated soil site: DOM molecular-level perspective. JOURNAL OF HAZARDOUS MATERIALS 2025;488:137372. [PMID: 39874753 DOI: 10.1016/j.jhazmat.2025.137372] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2024] [Revised: 01/11/2025] [Accepted: 01/23/2025] [Indexed: 01/30/2025]
5
Chen GL, Qian C, Du M, Tong MJ, Chen JJ, Yu HQ. Quantifying assembly processes of dissolved organic matter pools in eutrophication using high-resolution mass spectrometry and ecological models. WATER RESEARCH 2025;282:123781. [PMID: 40345130 DOI: 10.1016/j.watres.2025.123781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2025] [Revised: 04/21/2025] [Accepted: 05/03/2025] [Indexed: 05/11/2025]
6
Yang X, Peng X, Feng K, Wang S, Zou X, Deng Y. Organic molecular network analysis reveals transformation signatures of dissolved organic matter during anaerobic digestion process. WATER RESEARCH 2025;282:123777. [PMID: 40349674 DOI: 10.1016/j.watres.2025.123777] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2025] [Revised: 03/31/2025] [Accepted: 05/02/2025] [Indexed: 05/14/2025]
7
Cao X, He W, Wang XG, Chen X, Yi B, Ma C, Li X, Liu Y, He W, Shi Y. Carbon Isotopic Signatures of Aquifer Organic Molecules along Anthropogenic Recharge Gradients. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2025;59:7613-7623. [PMID: 40193595 DOI: 10.1021/acs.est.4c10929] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/09/2025]
8
Cao X, Ma H, Li SA, Huang H, Cui F, Tanentzap AJ. Enhanced Release and Reactivity of Soil Water-Extractable Organic Matter Following Wildfire in a Subtropical Forest. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2025;59:3992-4002. [PMID: 39982015 DOI: 10.1021/acs.est.4c13557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/22/2025]
9
Freeman EC, Peller T, Altermatt F. Ecosystem ecology needs an ecology of molecules. Trends Ecol Evol 2025;40:219-223. [PMID: 39893070 DOI: 10.1016/j.tree.2024.12.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2024] [Revised: 12/11/2024] [Accepted: 12/12/2024] [Indexed: 02/04/2025]
10
Zhang P, Wang Y, Yang B, Zhang Z, Wang X, Li H, He C, Zhang C, Zheng Y, Wang J. Marine Recalcitrant Dissolved Organic Matter Gained by Processing at Sandy Subterranean Estuaries. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2025;59:3569-3581. [PMID: 39945655 DOI: 10.1021/acs.est.4c10180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/26/2025]
11
Stegen JC, Garayburu-Caruso VA, Danczak RE, Chu RK, Goldman AE, McKever S, Renteria L, Toyoda J. Organic molecules are deterministically assembled in variably inundated river sediments, but drivers remain unclear. Sci Rep 2025;15:4332. [PMID: 39910094 PMCID: PMC11799343 DOI: 10.1038/s41598-024-76675-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Accepted: 10/16/2024] [Indexed: 02/07/2025]  Open
12
Wei Z, Ma X, Chai Y, Senbayram M, Wang X, Wu M, Zhang G, Cai S, Ma J, Xu H, Bol R, Rillig MC, Ji R, Yan X, Shan J. Tire Wear Particles Exposure Enhances Denitrification in Soil by Enriching Labile DOM and Shaping the Microbial Community. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2025;59:1209-1221. [PMID: 39725382 DOI: 10.1021/acs.est.4c09766] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2024]
13
Rich SL, Helbling DE. Broad Microbial Community Functions in a Conventional Activated Sludge System Exhibit Temporal Stability. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024;58:22368-22378. [PMID: 39628310 DOI: 10.1021/acs.est.4c09535] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2024]
14
Cheng Z, Hu Q, Guo H, Ma Q, Zhou J, Wang T, Zhu L. Long-term straw return enhanced the chlorine reactivity of soil DOM: Highlighting the molecular-level activity and transformation trade-offs. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;951:175485. [PMID: 39147061 DOI: 10.1016/j.scitotenv.2024.175485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2024] [Revised: 08/11/2024] [Accepted: 08/11/2024] [Indexed: 08/17/2024]
15
Freire-Zapata V, Holland-Moritz H, Cronin DR, Aroney S, Smith DA, Wilson RM, Ernakovich JG, Woodcroft BJ, Bagby SC, Rich VI, Sullivan MB, Stegen JC, Tfaily MM. Microbiome-metabolite linkages drive greenhouse gas dynamics over a permafrost thaw gradient. Nat Microbiol 2024;9:2892-2908. [PMID: 39354152 PMCID: PMC11522005 DOI: 10.1038/s41564-024-01800-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 07/30/2024] [Indexed: 10/03/2024]
16
de Celis M, Modin O, Arregui L, Persson F, Santos A, Belda I, Wilén BM, Liébana R. Community successional patterns and inter-kingdom interactions during granular biofilm development. NPJ Biofilms Microbiomes 2024;10:109. [PMID: 39426972 PMCID: PMC11490564 DOI: 10.1038/s41522-024-00581-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2024] [Accepted: 10/08/2024] [Indexed: 10/21/2024]  Open
17
Yang X, Feng K, Wang S, Yuan MM, Peng X, He Q, Wang D, Shen W, Zhao B, Du X, Wang Y, Wang L, Cao D, Liu W, Wang J, Deng Y. Unveiling the deterministic dynamics of microbial meta-metabolism: a multi-omics investigation of anaerobic biodegradation. MICROBIOME 2024;12:166. [PMID: 39244624 PMCID: PMC11380791 DOI: 10.1186/s40168-024-01890-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2024] [Accepted: 07/29/2024] [Indexed: 09/09/2024]
18
Hu Q, Lou M, Wang R, Bai S, Guo H, Zhou J, Ma Q, Wang T, Zhu L, Zhang X. Complexation with Metal Ions Affects Chlorination Reactivity of Dissolved Organic Matter: Structural Reactomics of Emerging Disinfection Byproducts. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024;58:13890-13903. [PMID: 39042037 DOI: 10.1021/acs.est.4c03022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/24/2024]
19
Ma K, Li Y, Song W, Zhou J, Liu X, Wang M, Gong X, Wang L, Tu Q. Disentangling drivers of mudflat intertidal DOM chemodiversity using ecological models. Nat Commun 2024;15:6620. [PMID: 39103321 DOI: 10.1038/s41467-024-50841-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Accepted: 07/23/2024] [Indexed: 08/07/2024]  Open
20
Cao X, Li SA, Huang H, Ma H. Wildfire Impacts on Molecular Changes of Dissolved Organic Matter during Its Passage through Soil. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024. [PMID: 38904350 DOI: 10.1021/acs.est.3c11056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/22/2024]
21
Catalán N, Rofner C, Verpoorter C, Pérez MT, Dittmar T, Tranvik L, Sommaruga R, Peter H. Treeline displacement may affect lake dissolved organic matter processing at high latitudes and altitudes. Nat Commun 2024;15:2640. [PMID: 38531850 DOI: 10.1038/s41467-024-46789-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Accepted: 03/11/2024] [Indexed: 03/28/2024]  Open
22
Wang L, Lin Y, Li J, Yu Q, Xu K, Ren H, Geng J. Deciphering Microbe-Mediated Dissolved Organic Matter Reactome in Wastewater Treatment Plants Using Directed Paired Mass Distance. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024;58:739-750. [PMID: 38147428 DOI: 10.1021/acs.est.3c06871] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2023]
23
Howard-Varona C, Lindback MM, Fudyma JD, Krongauz A, Solonenko NE, Zayed AA, Andreopoulos WB, Olson HM, Kim YM, Kyle JE, Glavina del Rio T, Adkins JN, Tfaily MM, Paul S, Sullivan MB, Duhaime MB. Environment-specific virocell metabolic reprogramming. THE ISME JOURNAL 2024;18:wrae055. [PMID: 38552150 PMCID: PMC11170926 DOI: 10.1093/ismejo/wrae055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Revised: 12/23/2023] [Accepted: 03/28/2024] [Indexed: 06/14/2024]
24
Li T, Li P, Qin W, Wu M, Saleem M, Kuang L, Zhao S, Tian C, Li Z, Jiang J, Chen K, Wang B. Fertilization Weakens the Ecological Succession of Dissolved Organic Matter in Paddy Rice Rhizosphere Soil at the Molecular Level. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023;57:19782-19792. [PMID: 37966898 DOI: 10.1021/acs.est.3c05939] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2023]
25
She Z, Wang J, Wang S, He C, Jiang Z, Pan X, Shi Q, Yue Z. Quantifying Stochastic Processes in Shaping Dissolved Organic Matter Pool with High-Resolution Mass Spectrometry. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023;57:16361-16371. [PMID: 37844127 DOI: 10.1021/acs.est.3c07046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2023]
26
Kajan K, Osterholz H, Stegen J, Gligora Udovič M, Orlić S. Mechanisms shaping dissolved organic matter and microbial community in lake ecosystems. WATER RESEARCH 2023;245:120653. [PMID: 37742402 DOI: 10.1016/j.watres.2023.120653] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Revised: 07/17/2023] [Accepted: 09/18/2023] [Indexed: 09/26/2023]
27
Li W, Liu N, Li J, Wang B, Shi X, Liang X, Yang M, Xu S, Liu CQ. Chemodiversity of Dissolved Organic Matter Is Governed by Microbial Biogeography in Inland Waters. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023;57:7753-7763. [PMID: 37163365 DOI: 10.1021/acs.est.3c00896] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
28
Yu S, Lv J, Jiang L, Geng P, Cao D, Wang Y. Changes of Soil Dissolved Organic Matter and Its Relationship with Microbial Community along the Hailuogou Glacier Forefield Chronosequence. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023;57:4027-4038. [PMID: 36811997 DOI: 10.1021/acs.est.2c08855] [Citation(s) in RCA: 30] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
29
Hu A, Meng F, Tanentzap AJ, Jang KS, Wang J. Dark Matter Enhances Interactions within Both Microbes and Dissolved Organic Matter under Global Change. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023;57:761-769. [PMID: 36516075 DOI: 10.1021/acs.est.2c05052] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
30
Current advances in interactions between microplastics and dissolved organic matters in aquatic and terrestrial ecosystems. Trends Analyt Chem 2022. [DOI: 10.1016/j.trac.2022.116882] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
31
Sun Y, Li X, Li X, Wang J. Deciphering the Fingerprint of Dissolved Organic Matter in the Soil Amended with Biodegradable and Conventional Microplastics Based on Optical and Molecular Signatures. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022;56:15746-15759. [PMID: 36301071 DOI: 10.1021/acs.est.2c06258] [Citation(s) in RCA: 94] [Impact Index Per Article: 31.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
32
Zerfaß C, Lehmann R, Ueberschaar N, Sanchez-Arcos C, Totsche KU, Pohnert G. Groundwater metabolome responds to recharge in fractured sedimentary strata. WATER RESEARCH 2022;223:118998. [PMID: 36030668 DOI: 10.1016/j.watres.2022.118998] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Revised: 08/01/2022] [Accepted: 08/16/2022] [Indexed: 06/15/2023]
33
Wu M, Li P, Li G, Liu K, Gao G, Ma S, Qiu C, Li Z. Using Potential Molecular Transformation To Understand the Molecular Trade-Offs in Soil Dissolved Organic Matter. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022;56:11827-11834. [PMID: 35880861 DOI: 10.1021/acs.est.2c01137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
34
Pang Z, Zhou G, Ewald J, Chang L, Hacariz O, Basu N, Xia J. Using MetaboAnalyst 5.0 for LC-HRMS spectra processing, multi-omics integration and covariate adjustment of global metabolomics data. Nat Protoc 2022;17:1735-1761. [PMID: 35715522 DOI: 10.1038/s41596-022-00710-w] [Citation(s) in RCA: 796] [Impact Index Per Article: 265.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2021] [Accepted: 05/18/2022] [Indexed: 01/01/2023]
35
Hu A, Jang KS, Meng F, Stegen J, Tanentzap AJ, Choi M, Lennon JT, Soininen J, Wang J. Microbial and Environmental Processes Shape the Link between Organic Matter Functional Traits and Composition. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022;56:10504-10516. [PMID: 35737964 DOI: 10.1021/acs.est.2c01432] [Citation(s) in RCA: 37] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
36
Li P, Liu J, Saleem M, Li G, Luan L, Wu M, Li Z. Reduced chemodiversity suppresses rhizosphere microbiome functioning in the mono-cropped agroecosystems. MICROBIOME 2022;10:108. [PMID: 35841078 PMCID: PMC9287909 DOI: 10.1186/s40168-022-01287-y] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Accepted: 05/16/2022] [Indexed: 06/15/2023]
37
Hu A, Choi M, Tanentzap AJ, Liu J, Jang KS, Lennon JT, Liu Y, Soininen J, Lu X, Zhang Y, Shen J, Wang J. Ecological networks of dissolved organic matter and microorganisms under global change. Nat Commun 2022;13:3600. [PMID: 35739132 PMCID: PMC9226077 DOI: 10.1038/s41467-022-31251-1] [Citation(s) in RCA: 91] [Impact Index Per Article: 30.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2021] [Accepted: 06/09/2022] [Indexed: 12/13/2022]  Open
38
Bulk and Spatially Resolved Extracellular Metabolome of Free-Living Nitrogen Fixation. Appl Environ Microbiol 2022;88:e0050522. [PMID: 35652664 PMCID: PMC9238392 DOI: 10.1128/aem.00505-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]  Open
39
Nelson AR, Toyoda J, Chu RK, Tolić N, Garayburu-Caruso VA, Saup CM, Renteria L, Wells JR, Stegen JC, Wilkins MJ, Danczak RE. Implications of sample treatment on characterization of riverine dissolved organic matter. ENVIRONMENTAL SCIENCE. PROCESSES & IMPACTS 2022;24:773-782. [PMID: 35416230 DOI: 10.1039/d2em00044j] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
40
Li S, Abdulkadir N, Schattenberg F, Nunes da Rocha U, Grimm V, Müller S, Liu Z. Stabilizing microbial communities by looped mass transfer. Proc Natl Acad Sci U S A 2022;119:e2117814119. [PMID: 35446625 PMCID: PMC9169928 DOI: 10.1073/pnas.2117814119] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Accepted: 03/11/2022] [Indexed: 01/18/2023]  Open
41
de Celis M, Duque J, Marquina D, Salvadó H, Serrano S, Arregui L, Santos A, Belda I. Niche differentiation drives microbial community assembly and succession in full-scale activated sludge bioreactors. NPJ Biofilms Microbiomes 2022;8:23. [PMID: 35411053 PMCID: PMC9001656 DOI: 10.1038/s41522-022-00291-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Accepted: 03/19/2022] [Indexed: 12/28/2022]  Open
42
Creusot N, Chaumet B, Eon M, Mazzella N, Moreira A, Morin S. Metabolomics insight into the influence of environmental factors in responses of freshwater biofilms to the model herbicide diuron. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022;29:29332-29347. [PMID: 34731421 DOI: 10.1007/s11356-021-17072-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2021] [Accepted: 10/12/2021] [Indexed: 06/13/2023]
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Little CJ, Rizzuto M, Luhring TM, Monk JD, Nowicki RJ, Paseka RE, Stegen JC, Symons CC, Taub FB, Yen JDL. Movement with meaning: integrating information into meta‐ecology. OIKOS 2022. [DOI: 10.1111/oik.08892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Danczak RE, Sengupta A, Fansler SJ, Chu RK, Garayburu-Caruso VA, Renteria L, Toyoda J, Wells J, Stegen JC. Inferring the Contribution of Microbial Taxa and Organic Matter Molecular Formulas to Ecological Assembly. Front Microbiol 2022;13:803420. [PMID: 35250925 PMCID: PMC8894727 DOI: 10.3389/fmicb.2022.803420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Accepted: 01/14/2022] [Indexed: 11/23/2022]  Open
45
Yuan Y, Yang C, Wang Y, Sun M, Bi C, Sun S, Sun G, Hao J, Li L, Shan C, Zhang S, Li Y. Functional metabolome profiling may improve individual outcomes in colorectal cancer management implementing concepts of predictive, preventive, and personalized medical approach. EPMA J 2022;13:39-55. [PMID: 35273658 PMCID: PMC8897532 DOI: 10.1007/s13167-021-00269-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Accepted: 12/27/2021] [Indexed: 10/19/2022]
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Serrana JM, Watanabe K. Sediment-associated microbial community profiling: sample pre-processing through sequential membrane filtration for 16S rRNA amplicon sequencing. BMC Microbiol 2022;22:33. [PMID: 35057747 PMCID: PMC8772107 DOI: 10.1186/s12866-022-02441-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Accepted: 01/10/2022] [Indexed: 12/16/2022]  Open
47
Danczak RE, Goldman AE, Chu RK, Toyoda JG, Garayburu-Caruso VA, Tolić N, Graham EB, Morad JW, Renteria L, Wells JR, Herzog SP, Ward AS, Stegen JC. Ecological theory applied to environmental metabolomes reveals compositional divergence despite conserved molecular properties. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021;788:147409. [PMID: 34022577 DOI: 10.1016/j.scitotenv.2021.147409] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Revised: 04/21/2021] [Accepted: 04/24/2021] [Indexed: 06/12/2023]
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Wang C, Xu Y, Yu B, Xiao A, Su Y, Guo H, Zhang H, Zhang L. Analysis of Sour Porridge Microbiota and Improvement of Cooking Quality via Pure Culture Fermentation Using Lacticaseibacillus paracasei Strain SZ02. Front Microbiol 2021;12:712189. [PMID: 34512590 PMCID: PMC8428527 DOI: 10.3389/fmicb.2021.712189] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Accepted: 08/05/2021] [Indexed: 11/13/2022]  Open
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Chen R, Miao Y, Liu Y, Zhang L, Zhong M, Adams JM, Dong Y, Mahendra S. Identification of novel 1,4-dioxane degraders and related genes from activated sludge by taxonomic and functional gene sequence analysis. JOURNAL OF HAZARDOUS MATERIALS 2021;412:125157. [PMID: 33540262 DOI: 10.1016/j.jhazmat.2021.125157] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2020] [Revised: 01/12/2021] [Accepted: 01/13/2021] [Indexed: 06/12/2023]
50
Belda I, Williams TC, de Celis M, Paulsen IT, Pretorius IS. Seeding the idea of encapsulating a representative synthetic metagenome in a single yeast cell. Nat Commun 2021;12:1599. [PMID: 33707418 PMCID: PMC7952416 DOI: 10.1038/s41467-021-21877-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Accepted: 02/16/2021] [Indexed: 01/31/2023]  Open
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