Root phenology in a changing climate

Reduction of the α and β diversity of ectomycorrhizal fungal community under snowmelt: highlights from a common garden trial using Abies sachalinensis with differing host origins and light condition

The community structure of ectomycorrhizal (ECM) fungi typically displays temporal dynamics. However, heavy snow cover hinders belowground investigations in temperate-to-boreal forests where ECM trees dominate, and the dynamics of the ECM fungal community structure during winter have not been fully elucidated. Given that boreal conifer species start root production in response to snowmelt, studies on the response of the ECM fungal community to snowmelt are needed. In the present study, to infer the community dynamics during the snowmelt season and their susceptibility to host tree conditions, we investigated ECM fungi associated with saplings of the evergreen conifer Abies sachalinensis immediately after the start and end of snowmelt in a common garden experiment. Saplings derived from two sources of contrasting snowfall conditions (heavy vs. little) were grown under two different light conditions (open vs. shaded), and the ECM fungal community dynamics patterns were compared across these combinations. The response of the ECM fungal community structure varied across treatments; although significant loss of ECM fungal operational taxonomic units (OTUs) was observed when saplings from the heavy snowfall region were grown under shade conditions, no change in community structure across the snowmelt season was observed for the other combinations. The stability of community composition despite the change in abiotic conditions with snowmelt, together with the effects of host origin and light conditions on community dynamics patterns, would imply the importance of host-mediated community dynamics of ECM fungi during the snowmelt season.

No winter halt in below-ground wood growth of four angiosperm deciduous tree species

In the temperate zone, deciduous trees exhibit clear above-ground seasonality, marked by a halt in wood growth that represents the completion of wood formation in autumn and reactivation in spring. However, the growth seasonality of below-ground woody organs, such as coarse roots, has been largely overlooked. Here we use tree monitoring data and pot experiments involving saplings to examine the late-season xylem development of stem and coarse roots with leaf phenology in four common deciduous tree species in Western Europe. Coarse-roots wood growth continued throughout the winter whereas stem wood growth halted in autumn, regardless of the tree species, experimental setting or location. Our results do not indicate a clear temperature constraint on below-ground wood growth, even during prolonged periods with soil temperatures lower than 3 °C. The continuous differentiation of xylem root cells in autumn and winter suggests that the non-growing season does not exist sensu stricto for all woody organs of angiosperm deciduous tree species of the temperate zone. Our findings hold implications for understanding tree functioning, in particular the seasonal wood formation, the environmental controls of tree growth and the carbon reserves dynamics.

Seasonal dynamics of fine root length in European beech: unveiling unexpected winter peaks and summer declines

Fine roots play a crucial role in many ecological and biogeochemical processes in temperate forests. Generally, fine root biomass is expected to increase during the growing season, when water and nutrient demands are high, but information on seasonal variability is still scarce. Here, seasonal differences in root length of European beech (Fagus sylvatica L.) were analysed at eight sites within its north-eastern distribution range. Fine roots of mature trees were monitored using minirhizotrons. Scans were taken for three different depths at the beginning of winter, the end of winter and over the summer for two consecutive years, and analysed automatically by an AI-algorithm (RootDetector). An additional experiment was carried out to show that the RootDetector was unaffected by changes in soil moisture. Root-length density was 40% higher at the beginning of winter and 51% higher at the end of winter than in summer. Our results indicate a net root loss during adverse conditions in early summer, but no trend towards deeper root growth over these drier periods. Interestingly, the root loss was compensated afterwards during more favourable conditions in autumn. We could show that fine root length in temperate forests is seasonally more variable and, so far, less predictable than previously assumed. A profound understanding of this seasonal variability is important for modelling terrestrial biogeochemical processes and global carbon fluxes.

Willow oak (Quercus phellos) seedling roots continue respiration and growth during fall and winter in a soil temperature-dependent manner

Many greentree reservoirs (GTRs) and other bottomland hardwood forests have experienced a shift in tree species composition away from desired red oaks (Quercus section Lobatae), like willow oak (Quercus phellos L.), due to flood stress mortality. Trees experience flood stress primarily through their root system, so it is surmised that GTR flooding may be occurring before root systems have reduced their activity entering the winter. Because soils buffer seasonal temperature changes, we hypothesized that root activity would respond to the belowground environment rather than the aboveground environment. To investigate whether cold soil temperatures reduce root growth and respiration in willow oak during winter, soil temperatures for container seedlings were either held at 15 °C or transitioned to 10 or 5 °C in the late fall. Root elongation was measured in seedlings grown in rhizotron pots by analyzing repeated images of roots during the fall-winter transition period. Root respiration, measured at soil temperature levels, was used as an indicator of root energetic expenses. Also, root respiration was measured at 15 and 5 °C to determine Q10 values to test for acclimation to low soil temperature. Root elongation continued in winter, even after stem elongation stopped in soil temperatures ≥5 °C, a condition usually met throughout most of the native range of willow oak. Both root elongation and respiration rates decreased in cooler soil temperatures. However, Q10 values were unaffected by soil temperature treatment. These findings do not support root dormancy or cold acclimation of root respiratory activity but indicate that temperature directly and reversibly affected root respiration rate. Root elongation may have been dependent on photoassimilates produced by green leaves that were retained through much of winter. Overall, our results suggest that willow oak roots may continue a high rate of growth throughout winter, unlike most temperate species measured to date, and that soil temperature has a major influence over their growth and respiration rates.

Upside down and the game of C allocation

Non-structural carbohydrates (NSCs) represent the primary carbon (C) reserves and play a crucial role in plant functioning and resilience. Indeed, these compounds are involved in the regulation between C supply and demand, and in the maintenance of hydraulic efficiency. Non-structural carbohydrates are stored in parenchyma of woody organs, which is recognized as a proxy for reserve storage capacity of tree. Notwithstanding the importance of NSCs for tree physiology, their long-term regulation and trade-offs against growth were not deeply investigated. This work evaluated the long-term dynamics of mature tree reserves in stem and root, proxied by parenchyma features and focusing on the trade-off and interplay between the resources allocation in radial growth and reserves in stem and coarse root. In a Mediterranean beech forest, NSCs content, stem and root wood anatomy analysis and eddy covariance data were combined. The parenchyma fraction (RAP) of beech root and stem was different, due to differences in axial parenchyma (AP) and narrow ray parenchyma (nRP) fractions. However, these parenchyma components and radial growth showed synchronous inter-annual dynamics between the two organs. In beech stem, positive correlations were found among soluble sugars content and nRP and among starch content and the AP. Positive correlations were found among Net Ecosystem Exchange (NEE) and AP of both organs. In contrast, NEE was negatively correlated to radial growth of root and stem. Our results suggest a different contribution of stem and roots to reserves storage and a putative partitioning in the functional roles of parenchyma components. Moreover, a long-term trade-off of C allocation between growth and reserve pool was evidenced. Indeed, in case of C source reduction, trees preferentially allocate C toward reserves pool. Conversely, in high productivity years, growth represents the major C sink.

Tree post-drought recovery: scenarios, regulatory mechanisms and ways to improve

Efficient post-drought recovery of growth and assimilation enables a plant to return to its undisturbed state and functioning. Unlike annual plants, trees suffer not only from the current drought, but also from cumulative impacts of consecutive water stresses which cause adverse legacy effects on survival and performance. This review provides an integrated assessment of ecological, physiological and molecular evidence on the recovery of growth and photosynthesis in trees, with a view to informing the breeding of trees with a better ability to recover from water stress. Suppression of recovery processes can result not only from stress damage but also from a controlled downshift of recovery as part of tree acclimation to water-limited conditions. In the latter case, recovery processes could potentially be activated by turning off the controlling mechanisms, but several obstacles make this unlikely. Tree phenology, and specifically photoperiodic constraints, can limit post-drought recovery of growth and photosynthesis, and targeting these constraints may represent a promising way to breed trees with an enhanced ability to recover post-drought. The mechanisms of photoperiod-dependent regulation of shoot, secondary and root growth and of assimilation processes are reviewed. Finally, the limitations and trade-offs of altering the photoperiodic regulation of growth and assimilation processes are discussed.

Above- and belowground phenology responses of subtropical Chinese fir (Cunninghamia lanceolata) to soil warming, precipitation exclusion and their interaction

Plant phenology plays an important role in nutrient cycling and carbon balance in forest ecosystems, but its response to the interaction of global warming and precipitation reduction remains unclear. In this study, an experiment with factorial soil warming (ambient, ambient +5 °C) and precipitation exclusion (ambient, ambient -50 %) was conducted in a subtropical Chinese fir (Cunninghamia lanceolata) plantation. We investigated the effects of soil warming, precipitation exclusion, and their interactions on Chinese fir phenology involving tree height and fine root growth. In the meantime, the impact of tree height growth and related climatic factors on fine root production was also assessed. The results showed that: (1) more variable phenology responses were observed in fine root growth than in tree height growth to the climatic treatments; the duration of fine root growth and tree height growth was significantly reduced by the precipitation exclusion and warming treatment, respectively; phenology differences of fine root and tree height growth caused by the solo warming and precipitation exclusion treatment were further enhanced by the combined treatment; and despite the greater inter-annual phenology stability of tree height growth than that of fine root growth, both of them showed insignificant response to all the climate treatments; (2) asynchrony of phenology between tree height and fine root growth was significantly enlarged by solo warming and precipitation exclusion treatments, and further enlarged by the combined treatment; (3) fine root production was significantly and positively correlated with air, and soil temperature, and tree height growth as well, which was altered by warming and precipitation exclusion treatments. Our results demonstrated that climatic changes significantly and differently alter phenology of, and extend the phenology asynchrony between, above and below ground plant components, and also highlight the climate-sensitive and variable nature of root phenology. Overall, these phenology responses to climatic change may weaken the close link between fine root production and tree height growth, which may result in temporal mismatch between nutrient demand and supply in Chinese fir plantation.

Bridging Time-series Image Phenotyping and Functional-Structural Plant Modeling to Predict Adventitious Root System Architecture

Root system architecture (RSA) is an important measure of how plants navigate and interact with the soil environment. However, current methods in studying RSA must make tradeoffs between precision of data and proximity to natural conditions, with root growth in germination papers providing accessibility and high data resolution. Functional-structural plant models (FSPMs) can overcome this tradeoff, though parameterization and evaluation of FSPMs are traditionally based in manual measurements and visual comparison. Here, we applied a germination paper system to study the adventitious RSA and root phenology of Populus trichocarpa stem cuttings using time-series image-based phenotyping augmented by FSPM. We found a significant correlation between timing of root initiation and thermal time at cutting collection (P value = 0.0061, R2 = 0.875), but little correlation with RSA. We also present a use of RhizoVision [1] for automatically extracting FSPM parameters from time series images and evaluating FSPM simulations. A high accuracy of the parameterization was achieved in predicting 2D growth with a sensitivity rate of 83.5%. This accuracy was lost when predicting 3D growth with sensitivity rates of 38.5% to 48.7%, while overall accuracy varied with phenotyping methods. Despite this loss in accuracy, the new method is amenable to high throughput FSPM parameterization and bridges the gap between advances in time-series phenotyping and FSPMs.

Warming nondormant tree roots advances aboveground spring phenology in temperate trees

Climate warming advances the onset of tree growth in spring, but above- and belowground phenology are not always synchronized. These differences in growth responses may result from differences in root and bud dormancy dynamics, but root dormancy is largely unexplored. We measured dormancy in roots and leaf buds of Fagus sylvatica and Populus nigra by quantifying the warming sum required to initiate above- and belowground growth in October, January and February. We furthermore carried out seven experiments, manipulating only the soil and not air temperature before or during tree leaf-out to evaluate the potential of warmer roots to influence budburst timing using seedlings and adult trees of F. sylvatica and seedlings of Betula pendula. Root dormancy was virtually absent in comparison with the much deeper winter bud dormancy. Roots were able to start growing immediately as soils were warmed during the winter. Interestingly, higher soil temperature advanced budburst across all experiments, with soil temperature possibly accounting for c. 44% of the effect of air temperature in advancing aboveground spring phenology per growing degree hour. Therefore, differences in root and bud dormancy dynamics, together with their interaction, likely explain the nonsynchronized above- and belowground plant growth responses to climate warming.

Embracing fine-root system complexity in terrestrial ecosystem modeling

Projecting the dynamics and functioning of the biosphere requires a holistic consideration of whole-ecosystem processes. However, biases toward leaf, canopy, and soil modeling since the 1970s have constantly left fine-root systems being rudimentarily treated. As accelerated empirical advances in the last two decades establish clearly functional differentiation conferred by the hierarchical structure of fine-root orders and associations with mycorrhizal fungi, a need emerges to embrace this complexity to bridge the data-model gap in still extremely uncertain models. Here, we propose a three-pool structure comprising transport and absorptive fine roots with mycorrhizal fungi (TAM) to model vertically resolved fine-root systems across organizational and spatial-temporal scales. Emerging from a conceptual shift away from arbitrary homogenization, TAM builds upon theoretical and empirical foundations as an effective and efficient approximation that balances realism and simplicity. A proof-of-concept demonstration of TAM in a big-leaf model both conservatively and radically shows robust impacts of differentiation within fine-root systems on simulating carbon cycling in temperate forests. Theoretical and quantitative support warrants exploiting its rich potentials across ecosystems and models to confront uncertainties and challenges for a predictive understanding of the biosphere. Echoing a broad trend of embracing ecological complexity in integrative ecosystem modeling, TAM may offer a consistent framework where modelers and empiricists can work together toward this grand goal.

Polar day syndrome: differences in growth, photosynthetic traits and sink-size patterns between northern and southern Finnish silver birch (Betula pendula Roth) provenances in native and non-native photoperiods

Continuous light (CL) is available throughout the polar day for plants in the Arctic during the growing season, whereas provenances of the same species experience a very different environment with non-CL (NCL) just a few latitudes to the south. Both provenances need to acclimate to climate warming, yet we lack comprehensive understanding of how their growth, photosynthesis and leaf traits differ. Further, the provenances presumably have morphological and physiological adaptations to their native environments and therefore differ in response to photoperiod. We tested the height growth, leaf longevity, biomass accumulation, biomass allocation and rates of gas exchange of northern (67°N) and southern (61°N) Finnish silver birch (Betula pendula Roth) origins in CL- and NCL-treatments in a 4-month chamber experiment. Irrespective of photoperiod, 67°N had higher area-based photosynthetic rate (Anet), stomatal conductance (gs) and relative height growth rate (RGR), but lower stomatal density and fewer branches and leaves than 61°N. Photoperiod affected height growth cessation, biomass and photosynthetic traits, whereas leaf longevity and many leaf functional traits remained unchanged. In CL, both provenances had lower gs, higher RGR, increased shoot:root ratio and increased sink sizes (more branching, more leaves, increased total plant dry weight) compared with NCL. In NCL, 67°N ceased height growth earlier than in CL, which altered biomass accumulation and distribution patterns. Northern conditions impose challenges for plant growth and physiology. Whether a provenance inhabits and is adapted to an area with or without CL can also affect its response to the changing climate. Northern birches may have adapted to CL and the short growing season with a 'polar day syndrome' of traits, including relatively high gas exchange rates with low leaf biomass and growth traits that are mainly limited by the environment and the earlier growth cessation (to avoid frost damage).

Separating the effects of air and soil temperature on silver birch. Part I. Does soil temperature or resource competition determine the timing of root growth?

The aboveground parts of boreal forest trees mostly grow earlier, and the roots later, in the growing season. We aimed to experimentally test whether the extrinsic driver of soil temperature or the intrinsic driver (resource competition between plant parts) is a more important control for the root and shoot growth of silver birch (Betula pendula Roth) seedlings. Sixteen two-year-old seedlings were grown in controlled environment rooms for two simulated growing seasons (GS1, GS2). In GS1, all the seedlings were acclimatized under the same conditions, but in GS2, the soil temperature treatments were: (i) constant 10 °C (Cool); (ii) constant 18 °C (Warm); (iii) early growing season at 10 °C, switched to 18 °C later (Early Cool Late Warm, ECLW) and (iv) early growing season 18 °C, switched to 10 °C later (Early Warm Late Cool, EWLC). The treatments did not affect growth allocation between shoots and roots. Warm soil benefitted shoot elongation as it slowed down in EWLC and accelerated in ECLW after the soil temperature switch. However, whole-tree biomasses were similar to Cool and the seedlings grew largest in Warm. Phenology was not strongly affected by soil temperature, and root and shoot growth did not usually peak simultaneously. Short root mortality increased strongly in ECLW and decreased in EWLC after the soil temperature switch. Long root longevity was not significantly affected but long root growth ceased earliest in ECLW. Soil warming increased foliar nutrient contents. Growth dynamics were not solely driven by soil temperature, but resource competition also played a significant role. The study showed the importance of soil temperature for fine root dynamics not only through root growth but also via root mortality, as soil warming increased mortality even more than growth. Soil temperature has complex effects on tree and soil functioning, which further affects carbon dynamics in forest ecosystems that have a climate feedback.

Growth of alpine grassland will start and stop earlier under climate warming

Alpine plants have evolved a tight seasonal cycle of growth and senescence to cope with a short growing season. The potential growing season length (GSL) is increasing because of climate warming, possibly prolonging plant growth above- and belowground. We tested whether growth dynamics in typical alpine grassland are altered when the natural GSL (2-3 months) is experimentally advanced and thus, prolonged by 2-4 months. Additional summer months did not extend the growing period, as canopy browning started 34-41 days after the start of the season, even when GSL was more than doubled. Less than 10% of roots were produced during the added months, suggesting that root growth was as conservative as leaf growth. Few species showed a weak second greening under prolonged GSL, but not the dominant sedge. A longer growing season under future climate may therefore not extend growth in this widespread alpine community, but will foster species that follow a less strict phenology.

Plant Growth Promotion and Heat Stress Amelioration in Arabidopsis Inoculated with Paraburkholderia phytofirmans PsJN Rhizobacteria Quantified with the GrowScreen-Agar II Phenotyping Platform

High temperatures inhibit plant growth. A proposed strategy for improving plant productivity under elevated temperatures is the use of plant growth-promoting rhizobacteria (PGPR). While the effects of PGPR on plant shoots have been extensively explored, roots-particularly their spatial and temporal dynamics-have been hard to study, due to their below-ground nature. Here, we characterized the time- and tissue-specific morphological changes in bacterized plants using a novel non-invasive high-resolution plant phenotyping and imaging platform-GrowScreen-Agar II. The platform uses custom-made agar plates, which allow air exchange to occur with the agar medium and enable the shoot to grow outside the compartment. The platform provides light protection to the roots, the exposure of it to the shoots, and the non-invasive phenotyping of both organs. Arabidopsis thaliana, co-cultivated with Paraburkholderia phytofirmans PsJN at elevated and ambient temperatures, showed increased lengths, growth rates, and numbers of roots. However, the magnitude and direction of the growth promotion varied depending on root type, timing, and temperature. The root length and distribution per depth and according to time was also influenced by bacterization and the temperature. The shoot biomass increased at the later stages under ambient temperature in the bacterized plants. The study offers insights into the timing of the tissue-specific, PsJN-induced morphological changes and should facilitate future molecular and biochemical studies on plant-microbe-environment interactions.

Water uptake patterns of tropical canopy trees in Borneo: species-specific and temporal variation and relationships with aboveground traits

Root water uptake depth and its temporal variation are important determinants of tree mortality, resource partitioning and drought resistance; however, their effects on tropical trees remain poorly understood. In this study, we investigated interspecific differences in water uptake depth and its temporal variation using stable isotope analysis and examined the relationships between water uptake depth and aboveground traits in a humid aseasonal tropical rainforest in Borneo. Species-specific differences in water uptake depth were examined for six dominant dipterocarp species. Temporal variation in water uptake depth for various canopy trees was assessed in three periods with different soil moisture conditions. We then examined the relationships between water uptake depth and aboveground traits including wood density, maximum tree height, flowering frequency and growth rate. Dipterocarpus globosus appeared to be more reliant on deep water resources than the other dipterocarp species. Water uptake from the soil layers varied among the three sampling periods. Trees generally utilized deeper soil water during the second driest sampling period, when temperatures were lowest. During the driest and wettest sampling periods, species with higher flowering frequencies tended to preferentially uptake deep soil water. These results suggest that low temperature and soil moisture promote increased deep soil water uptake in the study region. Dynamic relationships between water uptake patterns and aboveground tree traits may be related to resource partitioning among co-existing species.

Temporal dynamics of fine root production, mortality and turnover deviate across branch orders in a larch stand

Fine roots play a key role in carbon, nutrient, and water biogeochemical cycles in forest ecosystems. However, inter-annual dynamics of fine root production, mortality, and turnover on the basis of long-term measurement have been less studied. Here, field scanning rhizotrons were employed for tracking fine root by branch order over a 6 years period in a larch plantation. For total fine roots, from the first- to the fifth-order roots, annual root length production, length mortality, standing crops, and turnover rate varied up to 3.4, 2.3, 1.5, and 2.3-folds during the study period, respectively. The inter-annual variability of those roots indices in the first-order and the second-order roots were greater than that of the higher order (third- to fifth-order) roots. The turnover rate was markedly larger for the first-order roots than for the higher order roots, showing the greatest variability up to 20 times. Seasonal dynamics of root length production followed a general concentrated pattern with peak typically occurring in June or July, whereas root length mortality followed a general bimodal mortality pattern with the dominant peak in May and the secondary peak in August or October. Furthermore, the seasonal patterns of root length production and mortality were similar across years, especially for the first-order and the second-order roots. These results from long-term observation were beneficial for reducing uncertainty of characterizing fine root demography in consideration of large variation among years. Our findings highlight it is important for better understanding of fine root dynamics and determining root demography through distinguishing observation years and root branch orders.

Time-varying response of fine root growth to soil temperature and soil moisture in cypress and deciduous oak forests

Fine root phenology is controlled by complex mechanisms associated with aboveground phenological events and environmental conditions, and therefore, elucidating fine root responses to changing environments remains difficult without considering the dynamics within and among years. This study evaluated the response of fine root growth at variable time scales to the surrounding environments of soil temperature and moisture at ecosystem scales. Optical scanners were used to measure fine root production over 4 years in two forests dominated by either cypress or deciduous oak trees. Correlations between fine root production and soil temperature and moisture were analyzed using the state-space model. Fine root phenology varied among years in the cypress stand and showed stable growth patterns in the oak stand as production peaked in spring every year. Soil temperature had a dominant influence on fine root production, while soil moisture enhanced fine root growth especially in the oak stand. Fine root responses to both soil temperature and moisture peaked during the early growing season, indicating its own temperature hysteresis that means different responses under same temperature within a year. The time-varying response of fine root growth to external factors is a key perspective to explain fine root growth mechanisms, and whether evergreen or deciduous habits differentiates the fine root phenology due to a linkage between above- and belowground resource dynamics.

Responses of root phenology in ecotypes of Eriophorum vaginatum to transplantation and warming in the Arctic

The effect of climate change on phenology and growth is less understood for belowground plant tissues than for aboveground plant tissues, particularly in high-latitude regions. Ecotypes within a species adapted to a locality may display different responses to climate change. We established two common garden plots in the Arctic tundra north of the Brooks Range in northern Alaska. Three ecotypes of Eriophorum vaginatum along a latitudinal gradient were transplanted into common gardens, and half of the transplants were warmed using open-top chambers (OTCs). Minirhizotrons were used to track the root phenology during the growing seasons of 2016 and 2017. Warming with OTCs (approximately +1 °C in air) did not affect the root biomass, root production or root phenology. The southern ecotype (from 67°16'N) of Eriophorum vaginatum transplanted northward experienced delayed startup and root production compared to two northern ecotypes (from 68°38'N and 69°25'N), although significant differences were not observed in the three ecotypes in terms of root production, root biomass and growth duration at the two sites. Our results suggest that as the climate warms, ecotypes of Eriophorum vaginatum may be able to adjust their duration of root growth and root productivity by phenotypic plasticity, although the degree of plasticity controlling the root startup time may vary between southern and northern ecotypes.

Effects of Elevated Temperature on Root System Development of Two Lupine Species

The aim of this study was to assess the effect of elevated temperature on the growth, morphology and spatial orientation of lupine roots at the initial stages of development and on the formation of lupine root architecture at later stages. Two lupine species were studied-the invasive Lupinus polyphyllus Lindl. and the non-invasive L. luteus L. The plants were grown in climate chambers under 25 °C and simulated warming at 30 °C conditions. The angle of root curvature towards the vector of gravity was measured at the 48th hour of growth, and during a 4-h period after 90° reorientation. Root biometrical, histological measurements were carried out on 7-day-old and 30-day-old plants. The elevation of 5 °C affected root formation of the two lupine species differently. The initial roots of L. polyphyllus were characterized by worse spatial orientation, reduced growth and reduced mitotic index of root apical meristem at 30 °C compared with 25 °C. The length of primary roots of 30-day-old lupines and the number of lateral roots decreased by 14% and 16%, respectively. More intense root development and formation were observed in non-invasive L. luteus at 30 °C. Our results provide important information on the effect of elevated temperature on the formation of root architecture in two lupine species and suggest that global warming may impact the invasiveness of these species.

Microbial effects on plant phenology and fitness

Plant development and the timing of developmental events (phenology) are tightly coupled with plant fitness. A variety of internal and external factors determine the timing and fitness consequences of these life-history transitions. Microbes interact with plants throughout their life history and impact host phenology. This review summarizes current mechanistic and theoretical knowledge surrounding microbe-driven changes in plant phenology. Overall, there are examples of microbes impacting every phenological transition. While most studies have focused on flowering time, microbial effects remain important for host survival and fitness across all phenological phases. Microbe-mediated changes in nutrient acquisition and phytohormone signaling can release plants from stressful conditions and alter plant stress responses inducing shifts in developmental events. The frequency and direction of phenological effects appear to be partly determined by the lifestyle and the underlying nature of a plant-microbe interaction (i.e., mutualistic or pathogenic), in addition to the taxonomic group of the microbe (fungi vs. bacteria). Finally, we highlight biases, gaps in knowledge, and future directions. This biotic source of plasticity for plant adaptation will serve an important role in sustaining plant biodiversity and managing agriculture under the pressures of climate change.

Coordination of spring vascular and organ phenology in deciduous angiosperms growing in seasonally cold climates

In seasonally cold climates, many woody plants tolerate chilling and freezing temperatures by ceasing growth, shedding leaves and entering dormancy. At the same time, transport within these plants often decreases as the vascular system exhibits reduced functionality. As spring growth requires water and nutrients, we ask the question: how much does bud, leaf and flower development depend on the vasculature in spring? In this review, we present what is known about leaf, flower and vascular phenology to sort out this question. In early stages of bud development, buds rely on internal resources and do not appear to require vascular support. The situation changes during organ expansion, after leaves and flowers reconnect to the stem vascular system. However, there are major gaps in our understanding of the timing of vascular development, especially regarding the phloem, as well as the synchronization among leaves, flowers, stem and root vasculature. We believe these gaps are mainly the outcome of research completed in silo and urge future work to take a more integrative approach. We highlight current challenges and propose future directions to make rapid progress on this important topic in upcoming years.

Seasonal variations in the response of soil respiration to rainfall events in a riparian poplar plantation

Rainfall events have profound influence on the soil carbon release in different forest ecosystems. However, seasonal variations in soil respiration (RS) response to rainfall events and associated regulatory processes are not well documented in riparian forest ecosystems to date. We continuously measured soil respiration in a riparian plantation ecosystem from 2015 to 2018 to explore the relationships between soil respiration and rainfall events. Across the 4 years, 83 individual rainfall events were identified for spring, summer and autumn. We found that mean RS rate after rain (post-RS) was significantly higher than that before rain (pre-RS) (p < 0.05) in spring, and the relative change in soil respiration (RSrc) increased against rainfall size due to the stimulation by the significant increases in soil moisture content (ΔSM). In contrast, mean post-RS was lower than pre-RS and RSrc was significantly decreased with the increasing rainfall size (p < 0.01) in summer and autumn. Reduced changes in soil temperature (ΔTS) and increased soil moisture content after rain (post-SM) contributed to the decreased RS due to frequently occurring heavy rain events in summer. Increased ΔSM following rainfall events coupled with groundwater level increase suppressed RSrc in autumn, even though increased ΔTS could offset the negative effects of SM on RS to some extent. In addition, we found that higher post-SM after large rainfall events (>10 mm day^-1) changed the response of RS to soil temperature (TS) by reducing the temperature sensitivity (Q₁₀) even in this riparian plantation ecosystem. Our study highlights the importance of integrating seasonal difference in soil respiration response to rainfall events and the impact of large rainfall events on soil C release for estimating forest soil carbon cycling at multiple scales.

Climate Disruption of Plant-Microbe Interactions

Interactions between plants and microbes have important influences on evolutionary processes, population dynamics, community structure, and ecosystem function. We review the literature to document how climate change may disrupt these ecological interactions and develop a conceptual framework to integrate the pathways of plant-microbe responses to climate over different scales in space and time. We then create a blueprint to aid generalization that categorizes climate effects into changes in the context dependency of plant-microbe pairs, temporal mismatches and altered feedbacks over time, or spatial mismatches that accompany species range shifts. We pair a new graphical model of how plant-microbe interactions influence resistance to climate change with a statistical approach to predictthe consequences of increasing variability in climate. Finally, we suggest pathways through which plant-microbe interactions can affect resilience during recovery from climate disruption. Throughout, we take a forward-looking perspective, highlighting knowledge gaps and directions for future research.

Distinct xylem responses to acute vs prolonged drought in pine trees

Increasing dryness challenges trees' ability to maintain water transport to the leaves. Most plant hydraulics models use a static xylem response to water stress. Yet, in reality, lower soil moisture and warmer temperatures during growing seasons feed back onto xylem development. In turn, adjustments to water stress in the newly built xylem influence future physiological responses to droughts. In this study, we investigate the annual variation of anatomical traits in branch xylem in response to different soil and atmospheric moisture conditions and tree stress levels, as indicated by seasonal predawn leaf water potential (ΨL,pd). We used a 6-year field experiment in southwestern USA with three soil water treatments applied to Pinus edulis Engelm trees-ambient, drought (45% rain reduction) and irrigation (15-35% annual water addition). All trees were also subject to a natural 1-year acute drought (soil and atmospheric) that occurred during the experiment. The irrigated trees showed only moderate changes in anatomy-derived hydraulic traits compared with the ambient trees, suggesting a generally stable, well-balanced xylem structure under unstressed conditions. The artificial prolonged soil drought increased hydraulic efficiency but lowered xylem construction costs and decreased tracheid implosion safety ((t/b)2), suggesting that annual adjustments of xylem structure follow a safety-efficiency trade-off. The acute drought plunged hydraulic efficiency across all treatments. The combination of acute and prolonged drought resulted in vulnerable and inefficient new xylem, disrupting the stability of the anatomical trade-off observed in the rest of the years. The xylem hydraulic traits showed no consistent direct link to ΨL,pd. In the future, changes in seasonality of soil and atmospheric moisture are likely to have a critical impact on the ability of P. edulis to acclimate its xylem to warmer climate. Furthermore, the increasing frequency of acute droughts might reduce hydraulic resilience of P. edulis by repeatedly creating vulnerable and less efficient anatomical structure.

High Temperature can Change Root System Architecture and Intensify Root Interactions of Plant Seedlings

Climate change could alter plant aboveground and belowground resource allocation. Compared with shoots, we know much less about how roots, especially root system architecture (RSA) and their interactions, may respond to temperature changes. Such responses could have great influence on species'acquisition of resources and their competition with neighbors. We used a gel-based transparent growth system to in situ observe the responses of RSA and root interactions of three common subtropical plant species seedlings in Asia differing in growth forms (herb, shrub, and tree) under a wide growth temperature range of 18-34°C, including low and supra-optimal temperatures. Results showed that the RSA, especially root depth and root width, of the three species varied significantly in response to increased temperature although the response of their aboveground shoot traits was very similar. Increased temperature was also observed to have little impact on shoot/root resource allocation pattern. The variations in RSA responses among species could lead to both the intensity and direction change of root interactions. Under high temperature, negative root interactions could be intensified and species with larger root size and fast early root expansion had competitive advantages. In summary, our findings indicate that greater root resilience play a key role in plant adapting to high temperature. The varied intensity and direction of root interactions suggest changed temperatures could alter plant competition. Seedlings with larger root size and fast early root expansion may better adapt to warmer climates.

Dynamics and Vertical Distribution of Roots in European Beech Forests and Douglas Fir Plantations in Bulgaria

Identifying patterns in roots spatial distribution and dynamics, and quantifying the root stocks, annual production and turnover rates at species level is essential for understanding plant ecological responses to local environmental factors and climate change. We studied selected root traits in four different stands, two European beech (Fagus sylvatica L.) forests and two Douglas fir (Pseudotsuga menziezii Mirb. Franco) plantations. Root system vertical distribution and dynamics were studied using sequential coring method and characterised into three root diameter size classes (0–2, 2–5 and 5–10 mm) sampled at three different soil depths (0–15, 15–30, 30–45 cm). Root annual production and turnover rates were analysed and quantified using Decision Matrix and Maximum-Minimum estimation approaches. The overall root mass (<10 mm diameter up to 0–45 cm soil depth) was higher in the beech forests than in the Douglas fir plantations. Some root traits, e.g., the overall root mass, the fine (0–2 mm) and small (2–5 mm) roots mass, differed significantly between the sampling plots rather than between the forest types. The root system revealed a tree species specific vertical distribution pattern. More than half of the fine and small roots biomass of the Douglas fir stands were allocated in the uppermost soil layer and decreased significantly with depths, while in the beech forests the biomass was more uniformly distributed and decreased gradually with increasing soil depth. Although both tree species belong to two different plant functional types and the stands were situated in two distantly located regions with different climatic and soil characteristics, we revealed similar trends in the root biomass and necromass dynamics, and close values for the annual production and turnover rates. The mean turnover rates for all studied stands obtained by sequential coring and Decision Matrix were 1.11 yr−1 and 0.76 yr−1 based on mean and maximum biomass data, respectively. They were similar to the averaged values suggested for Central and Northern European forests but higher compared to those reported from Southern Europe.

Cryptic phenology in plants: Case studies, implications, and recommendations

Plant phenology-the timing of cyclic or recurrent biological events in plants-offers insight into the ecology, evolution, and seasonality of plant-mediated ecosystem processes. Traditionally studied phenologies are readily apparent, such as flowering events, germination timing, and season-initiating budbreak. However, a broad range of phenologies that are fundamental to the ecology and evolution of plants, and to global biogeochemical cycles and climate change predictions, have been neglected because they are "cryptic"-that is, hidden from view (e.g., root production) or difficult to distinguish and interpret based on common measurements at typical scales of examination (e.g., leaf turnover in evergreen forests). We illustrate how capturing cryptic phenology can advance scientific understanding with two case studies: wood phenology in a deciduous forest of the northeastern USA and leaf phenology in tropical evergreen forests of Amazonia. Drawing on these case studies and other literature, we argue that conceptualizing and characterizing cryptic plant phenology is needed for understanding and accurate prediction at many scales from organisms to ecosystems. We recommend avenues of empirical and modeling research to accelerate discovery of cryptic phenological patterns, to understand their causes and consequences, and to represent these processes in terrestrial biosphere models.

The Dynamics of Living and Dead Fine Roots of Forest Biomes Across the Northern Hemisphere

Research Highlights: A detailed picture of the seasonality in fine root biomass (FRB), necromass (FRN), and the biomass/necromass ratio (FRBN) throughout the whole year is crucial to uncover profound effects of long-term environmental changes on fine root dynamics. Materials and Methods: We used meta-analysis to characterize the variability of FRB, FRN and FRBN, and determined their relations with climatic (monthly versus annual), edaphic and geomorphic factors for tropical, temperate and boreal forest biomes across the Northern Hemisphere. Results: Boreal forests exhibited the highest FRB and FRN, while tropical forests yielded the lowest FRN, and thus the greatest FRBN. FRB and FRN significantly decreased with sampling depth, but increased with soil organic carbon content and elevation, while an opposite pattern was found for FRBN. Temperature and precipitation at different time scales (monthly versus annual) and latitude had varying influences on fine roots. High FRB and FRN were observed during dry season for tropical forests, but in the late growing season for temperate forests. The three forest biomes exhibited the high root activity (measured as FRBN) in June or July. Conclusions: It is crucial to realize the universal and specific responses of fine roots to multiple environmental factors when attempting to incorporate these parameters into fine root monthly dynamic models in forest ecosystems. The biome-specific fluctuation of fine roots contributes to identify the influence factors on fine root seasonal patterns throughout the whole year. Our analysis is expected to improve the understanding of the key role of fine roots at monthly level in modeling and predicting carbon budget of various forest biomes under future climate change.

Impact of fertiliser, water table, and warming on celery yield and CO2 and CH4 emissions from fenland agricultural peat

Peatlands are globally important areas for carbon preservation; although covering only 3% of global land area, they store 30% of total soil carbon. Lowland peat soils can also be very productive for agriculture, but their cultivation requires drainage as most crops are intolerant of root-zone anoxia. This leads to the creation of oxic conditions in which organic matter becomes vulnerable to mineralisation. Given the demand for high quality agricultural land, 40% of the UK's peatlands have been drained for agricultural use. In this study we present the outcomes of a controlled environment experiment conducted on agricultural fen peat to examine possible trade-offs between celery growth (an economically important crop on the agricultural peatlands of eastern England) and emissions of greenhouse gases (carbon dioxide (CO₂) and methane (CH₄)) at different temperatures (ambient and ambient +5 °C), water table levels (-30 cm, and -50 cm below the surface), and fertiliser use. Raising the water table from -50 cm to -30 cm depressed yields of celery, and at the same time decreased the entire ecosystem CO₂ loss by 31%. A 5 °C temperature increase enhanced ecosystem emissions of CO₂ by 25% and increased celery dry shoot weight by 23% while not affecting the shoot fresh weight. Fertiliser addition increased both celery yields and soil respiration by 22%. Methane emissions were generally very low and not significantly different from zero. Our results suggest that increasing the water table can lower emissions of greenhouse gases and reduce the rate of peat wastage, but reduces the productivity of celery. If possible, the water table should be raised to -30 cm before and after cultivation, and only decreased during the growing season, as this would reduce the overall greenhouse gas emissions and peat loss, potentially not affecting the production of vegetable crops.

Waterlogging and soil freezing during dormancy affected root and shoot phenology and growth of Scots pine saplings

Soil waterlogging is predicted to increase in the future climate in boreal regions due to increased precipitation. Snowmelt periods in winter may also become more common and further increase the amount of water in soil. It is not well known how waterlogging and soil freezing during winter affect the physiology, phenology and growth of trees. Our aim was to study the below- and aboveground responses of Scots pine (Pinus sylvestris L.) saplings to waterlogging (WL) in frozen (Fr) and unfrozen (NoFr) soils in a growth chamber experiment. The soil was either -2 °C or +2 °C and either waterlogged or not in a split-plot design for 6 weeks during dormancy, with similar air conditions in all treatments, which were Fr + WL, NoFr + WL, Fr + NoWL and NoFr + NoWL. Needles showed a shift towards a deeper dormancy in frozen than unfrozen soil in terms of chlorophyll fluorescence (Fv/Fm), water potential and apoplastic electrical resistance. In spring, initiation of shoot elongation started earlier if the soil was frozen during dormancy. In Fr + WL, initiation of root growth was delayed by 20 days compared with other treatments; after that, the root growth peaked at the same time as needle elongation. Needles remained smaller in Fr + WL than in the other treatments, indicating that roots formed a strong sink for carbon. Shoot and root biomass were not negatively affected by waterlogging if the soil remained unfrozen. In Fr + WL, survival and growth capacity of new terminal and whorl buds, the number of bud scales and the number of dwarf shoots were reduced. We conclude that soil freezing on sites prone to waterlogging should be considered in management of boreal forests, especially in the face of predicted climate change.

Unaltered phenology but increased production of ectomycorrhizal roots of Pinus elliottii under 4 years of nitrogen addition

Timing (phenology) and amount (production) are two integral facets of root growth, and their shifts have profound influences on below-ground resource acquisition. However, the environmental control and the effects of nitrogen (N) deposition on the production and phenology of ectomycorrhizal (ECM) roots remain unclear. Using a 4 yr minirhizotron experiment, we explored the control of the production and three phenophases (initiation, peak, and cessation of growth) of ECM roots in two soil layers and investigated their dynamic responses to N addition in a seasonally dry subtropical Pinus elliottii forest. We found a stronger control of water availability on the production and a stronger control of temperature on the phenology of ECM roots under ambient conditions. Temperature was correlated positively with initiation and negatively with cessation, especially in the shallow layer. N addition did not affect the phenology of ECM roots but increased their production by modifying N and phosphorus (P) stoichiometry in the soil and foliage. Our findings suggest a greater sensitivity of production than phenology of ECM roots to N addition. The increased production of ECM roots under N addition could be driven by N-induced P limitation or some combination of below-ground resources (P, N, water).

Different belowground responses to elevated ozone and soil water deficit in three European oak species (Quercus ilex, Q. pubescens and Q. robur)

Effects on roots due to ozone and/or soil water deficit often occur through diminished belowground allocation of carbon. Responses of root biomass, morphology, anatomy and ectomycorrhizal communities were investigated in seedlings of three oak species: Quercus ilex L., Q. pubescens Willd. and Q. robur L., exposed to combined effects of elevated ozone (ambient air and 1.4 × ambient air) and water deficit (100% and 10% irrigation relative to field capacity) for one growing season at a free-air ozone exposure facility. Effects on root biomass were observed as general reduction in coarse root biomass by -26.8% and in fine root biomass by -13.1% due to water deficit. Effect on coarse root biomass was the most prominent in Q. robur (-36.3%). Root morphological changes manifested as changes in proportions of fine root (<2 mm) diameter classes due to ozone and water deficit in Q. pubescens and due to water deficit in Q. robur. In addition, reduced fine root diameter (-8.49%) in Q. robur was observed under water deficit. Changes in root anatomy were observed as increased vessel density (+18.5%) due to ozone in all three species, as reduced vessel tangential diameter (-46.7%) in Q. ilex due to interaction of ozone and water, and as generally increased bark to secondary xylem ratio (+47.0%) due to interaction of ozone and water. Water deficit influenced occurrence of distinct growth ring boundaries in roots of Q. ilex and Q. robur. It shifted the ectomycorrhizal community towards dominance of stress-resistant species, with reduced relative abundance of Tomentella sp. 2 and increased relative abundances of Sphaerosporella brunnea and Thelephora sp. Our results provide evidence that expression of stress effects varies between root traits; therefore the combined analysis of root traits is necessary to obtain a complete picture of belowground responses.

Tree root dynamics in montane and sub-alpine mixed forest patches

BACKGROUND AND AIMS

The structure of heterogeneous forests has consequences for their biophysical environment. Variations in the local climate significantly affect tree physiological processes. We hypothesize that forest structure also alters tree root elongation and longevity through temporal and spatial variations in soil temperature and water potential.

METHODS

We installed rhizotrons in paired vegetation communities of closed forest (tree islands) and open patches (canopy gaps), along a soil temperature gradient (elevations of 1400, 1700 and 2000 m) in a heterogeneous mixed forest. We measured the number of growing tree roots, elongation and mortality every month over 4 years.

KEY RESULTS

The results showed that the mean daily root elongation rate (RER) was not correlated with soil water potential but was significantly and positively correlated with soil temperature between 0 and 8 °C only. The RER peaked in spring, and a smaller peak was usually observed in the autumn. Root longevity was dependent on altitude and the season in which roots were initiated, and root diameter was a significant factor explaining much of the variability observed. The finest roots usually grew faster and had a higher risk of mortality in gaps than in closed forest. At 2000 m, the finest roots had a higher risk of mortality compared with the lower altitudes.

CONCLUSIONS

The RER was largely driven by soil temperature and was lower in cold soils. At the treeline, ephemeral fine roots were more numerous, probably in order to compensate for the shorter growing season. Differences in soil climate and root dynamics between gaps and closed forest were marked at 1400 and 1700 m, but not at 2000 m, where canopy cover was more sparse. Therefore, heterogeneous forest structure and situation play a significant role in determining root demography in temperate, montane forests, mostly through impacts on soil temperature.

Fast Responses of Root Dynamics to Increased Snow Deposition and Summer Air Temperature in an Arctic Wetland

In wet tundra ecosystems, covering vast areas of the Arctic, the belowground plant biomass exceeds the aboveground, making root dynamics a crucial component of the nutrient cycling and the carbon (C) budget of the Arctic. In response to the projected climatic scenarios for the Arctic, namely increased temperature and changes in precipitation patterns, root dynamics may be altered leading to significant changes in the net ecosystem C budget. Here, we quantify the single and combined effects of 1 year of increased winter snow deposition by snow fences and summer warming by open-top chambers (OTCs) on root dynamics in a wetland at Disko Island (West Greenland). Based on ingrowth bags, snow accumulation decreased root productivity by 42% in the 0-15 cm soil depth compared to ambient conditions. Over the growing season 2014, minirhizotron observations showed that root growth continued until mid-September in all treatments, and it peaked between the end of July and mid-August. During the season, plots exposed to experimental warming showed a significant increase in root number during September (between 39 and 53%) and a 39% increase in root length by the beginning of September. In addition, a significant reduction of root diameter (14%) was observed in plots with increased snow accumulation. Along the soil profile (0-40 cm) summer warming by OTCs significantly increased the total root length (54%), root number (41%) and the root growth in the 20-30 cm soil depth (71%). These results indicate a fast response of this ecosystem to changes in air temperature and precipitation. Hence, on a short-term, summer warming may lead to increased root depth and belowground C allocation, whereas increased winter snow precipitation may reduce root production or favor specific plant species by means of reduced growing season length or increased nutrient cycling. Knowledge on belowground root dynamics is therefore critical to improve the estimation of the C balance of the Arctic.

Plant molecular responses to the elevated ambient temperatures expected under global climate change

Environmental temperatures affect plant distribution, growth, and development. The Intergovernmental Panel on Climate Change (IPCC) predicts that global temperatures will rise by at least 1.5°C by the end of this century. Global temperature changes have already had a discernable impact on agriculture, phenology, and ecosystems. At the molecular level, extensive literature exists on the mechanism controlling plant responses to high temperature stress. However, few studies have focused on the molecular mechanisms behind plant responses to mild increases in ambient temperature. Previous research has found that moderately higher ambient temperatures can induce hypocotyl elongation and early flowering. Recent evidence demonstrates roles for the phytohormones auxin and ethylene in adaptive growth of plant roots to slightly higher ambient temperatures.

Greater temperature sensitivity of plant phenology at colder sites: implications for convergence across northern latitudes

Warmer temperatures are accelerating the phenology of organisms around the world. Temperature sensitivity of phenology might be greater in colder, higher latitude sites than in warmer regions, in part because small changes in temperature constitute greater relative changes in thermal balance at colder sites. To test this hypothesis, we examined up to 20 years of phenology data for 47 tundra plant species at 18 high-latitude sites along a climatic gradient. Across all species, the timing of leaf emergence and flowering was more sensitive to a given increase in summer temperature at colder than warmer high-latitude locations. A similar pattern was seen over time for the flowering phenology of a widespread species, Cassiope tetragona. These are among the first results highlighting differential phenological responses of plants across a climatic gradient and suggest the possibility of convergence in flowering times and therefore an increase in gene flow across latitudes as the climate warms.

Limited linkages of aboveground and belowground phenology: A study in grape

PREMISE OF THE STUDY

Plant phenology influences resource utilization, carbon fluxes, and interspecific interactions. Although controls on aboveground phenology have been studied to some degree, controls on root phenology are exceptionally poorly understood.

METHODS

We used minirhizotrons to examine the timing of grape root production over 5 yr in Fredonia, New York, USA, in a humid continental climate; and over 3 yr in Oakville, California, USA, in a Mediterranean climate. We used data from previous experiments to examine the relationship of root phenology with aboveground phenology. We compared interannual variability in root and shoot growth and determined the influence of abiotic factors on the timing of root initiation, peak root standing crop, peak root growth rate, and cessation of root growth.

KEY RESULTS

Root phenology was not tightly coupled with aboveground phenological periods. Both sites typically had one yearly root flush and high interannual variability in root growth. Root phenology was more variable in California than in New York. In this and other published studies, interannual variation in root phenology was greater than variation in aboveground phenology. The three phenological phases of root growth-root initiation, peak root growth, and root cessation-were related to different suites of abiotic factors.

CONCLUSIONS

Root phenology is highly variable among years. Analysis of potential controlling factors over several years suggest that belowground phenological phases should be analyzed separately from each other. If aboveground grape phenology responds differently than belowground phenology to changes in air temperature, global warming may further uncouple the timing of aboveground and belowground growth.