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For: Wertheim JO, Murrell B, Smith MD, Kosakovsky Pond SL, Scheffler K. RELAX: detecting relaxed selection in a phylogenetic framework. Mol Biol Evol 2014;32:820-32. [PMID: 25540451 DOI: 10.1093/molbev/msu400] [Citation(s) in RCA: 460] [Impact Index Per Article: 41.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
Number Cited by Other Article(s)
1
Sun L, Xu Z, Shuai M, Li C, Yang G, Xu S. Natural resistance to cancers in long-lived mammals: genomic mechanisms and experimental evidence to explain Peto's paradox. SCIENCE CHINA. LIFE SCIENCES 2025;68:1801-1814. [PMID: 40131646 DOI: 10.1007/s11427-024-2838-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2024] [Accepted: 01/10/2025] [Indexed: 03/27/2025]
2
Lucotte EA, Jay P, Rougemont Q, Boyer L, Cornille A, Snirc A, Labat A, Chahine E, Duhamel M, Namias A, Gendelman J, Ma WJ, Hayes RK, Baruri S, Ham JP, Perlin MH, Hood ME, Rodríguez de la Vega RC, Giraud T. Repeated loss of function at HD mating-type genes and of recombination in anther-smut fungi. Nat Commun 2025;16:4962. [PMID: 40436846 PMCID: PMC12119880 DOI: 10.1038/s41467-025-60222-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2024] [Accepted: 05/14/2025] [Indexed: 06/01/2025]  Open
3
Liu X, Blomme J, Bogaert KA, D'hondt S, Coulembier Vandelannoote E, Wichard T, De Clerck O. Positive selection and relaxed purifying selection contribute to rapid evolution of sex-biased genes in green seaweed Ulva. BMC Ecol Evol 2025;25:44. [PMID: 40346481 PMCID: PMC12063405 DOI: 10.1186/s12862-025-02382-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2025] [Accepted: 04/25/2025] [Indexed: 05/11/2025]  Open
4
Weng Y, Qin D, Li X, Zhou J, Zhang B, Li QQ. Convergent Isobilateral Leaves Increase the Risk for Mangroves Facing Human-Induced Rapid Environmental Changes. PLANT, CELL & ENVIRONMENT 2025;48:3500-3511. [PMID: 39777404 DOI: 10.1111/pce.15373] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2024] [Accepted: 12/27/2024] [Indexed: 01/11/2025]
5
Ding Y, Zou M, Guo B. Genomic signatures associated with recurrent scale loss in cyprinid fish. Integr Zool 2025;20:535-550. [PMID: 38816909 DOI: 10.1111/1749-4877.12851] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/01/2024]
6
Policarpo M, Salzburger W, Maumus F, Gilbert C. Multiple Horizontal Transfers of Immune Genes Between Distantly Related Teleost Fishes. Mol Biol Evol 2025;42:msaf107. [PMID: 40378191 PMCID: PMC12107551 DOI: 10.1093/molbev/msaf107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2024] [Revised: 04/29/2025] [Accepted: 05/02/2025] [Indexed: 05/18/2025]  Open
7
Zhao X, Liu Y, Yuan B, Cao Z, Yang Y, He C, Chan KC, Xiao S, Lin H, Fang Q, Ye G, Ye X. Genomic signatures associated with the evolutionary loss of egg yolk in parasitoid wasps. Proc Natl Acad Sci U S A 2025;122:e2422292122. [PMID: 40232796 PMCID: PMC12036997 DOI: 10.1073/pnas.2422292122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2024] [Accepted: 03/14/2025] [Indexed: 04/16/2025]  Open
8
Oyeniran KA, Tenibiaje MO. Detectable episodic positive selection in the virion strand a-strain Maize streak virus genes may have a role in its host adaptation. Virus Genes 2025:10.1007/s11262-025-02157-z. [PMID: 40237943 DOI: 10.1007/s11262-025-02157-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2024] [Accepted: 04/06/2025] [Indexed: 04/18/2025]
9
Xie YY, Wen B, Bai MZ, Guo YY. De Novo Creation of Two Novel Spliceosomal Introns of RECG1 by Intronization of Formerly Exonic Sequences in Orchidaceae. J Mol Evol 2025;93:267-277. [PMID: 40202594 DOI: 10.1007/s00239-025-10242-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2024] [Accepted: 03/21/2025] [Indexed: 04/10/2025]
10
Iverson ENK, Criswell A, Havird JC. Stronger Evidence for Relaxed Selection Than Adaptive Evolution in High-elevation Animal mtDNA. Mol Biol Evol 2025;42:msaf061. [PMID: 40114504 PMCID: PMC12018679 DOI: 10.1093/molbev/msaf061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2023] [Revised: 07/04/2024] [Accepted: 07/15/2024] [Indexed: 03/22/2025]  Open
11
Song S, Cao J, Xiang H, Liu Z, Jiang W. Comparative mitogenomic analysis of Chinese cavefish Triplophysa (Cypriniformes: Nemacheilidae): novel gene tandem duplication and evolutionary implications. BMC Genomics 2025;26:293. [PMID: 40128668 PMCID: PMC11934697 DOI: 10.1186/s12864-025-11486-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2024] [Accepted: 03/13/2025] [Indexed: 03/26/2025]  Open
12
Ma J, Bechsgaard J, Aagaard A, Villesen P, Bilde T, Schierup MH. The genomic consequences and persistence of sociality in spiders. Genome Res 2025;35:499-511. [PMID: 39978820 PMCID: PMC11960701 DOI: 10.1101/gr.279503.124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Accepted: 02/04/2025] [Indexed: 02/22/2025]
13
Tressel LG, Shrestha B, Lee C, Choi IS, Ruhlman TA, Cardoso D, Wojciechowski MF, Jansen RK. Plastid-nuclear coevolution of ribosomal protein genes in papilionoid legumes. Mol Phylogenet Evol 2025;204:108281. [PMID: 39733867 DOI: 10.1016/j.ympev.2024.108281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 12/23/2024] [Accepted: 12/26/2024] [Indexed: 12/31/2024]
14
Prost S, Elbers JP, Slezacek J, Hykollari A, Fuselli S, Smith S, Fusani L. The unexpected loss of the 'hunger hormone' ghrelin in true passerines: a game changer in migration physiology. ROYAL SOCIETY OPEN SCIENCE 2025;12:242107. [PMID: 40109942 PMCID: PMC11919490 DOI: 10.1098/rsos.242107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/02/2024] [Revised: 02/19/2025] [Accepted: 02/21/2025] [Indexed: 03/22/2025]
15
Havens JL, Kosakovsky Pond SL, Zehr JD, Pekar JE, Parker E, Worobey M, Andersen KG, Wertheim JO. Dynamics of natural selection preceding human viral epidemics and pandemics. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.02.26.640439. [PMID: 40060453 PMCID: PMC11888428 DOI: 10.1101/2025.02.26.640439] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 03/15/2025]
16
Liang X, Wu M, Nong Q, Yang S, Kan T, Feng P. Evolution of UCP1 Gene and Its Significance to Temperature Adaptation in Rodents. Int J Mol Sci 2025;26:2155. [PMID: 40076776 PMCID: PMC11899873 DOI: 10.3390/ijms26052155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2024] [Revised: 02/12/2025] [Accepted: 02/24/2025] [Indexed: 03/14/2025]  Open
17
Edlund M, Anderson BM, Su HJ, Robison T, Caraballo-Ortiz MA, Der JP, Nickrent DL, Petersen G. Plastome evolution in Santalales involves relaxed selection prior to loss of ndh genes and major boundary shifts of the inverted repeat. ANNALS OF BOTANY 2025;135:515-530. [PMID: 39213003 PMCID: PMC11897430 DOI: 10.1093/aob/mcae145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2024] [Accepted: 09/03/2024] [Indexed: 09/04/2024]
18
Cai L, Havird JC, Jansen RK. Recombination and retroprocessing in broomrapes reveal a universal roadmap for mitochondrial evolution in heterotrophic plants. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.02.14.637881. [PMID: 39990427 PMCID: PMC11844532 DOI: 10.1101/2025.02.14.637881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 02/25/2025]
19
Wang J, Chang J, Wang K, Liang B, Zhu Y, Liu Z, Liang X, Chen J, Peng Y, Agnarsson I, Li D, Liu J. Blue light restores functional circadian clocks in eyeless cave spiders. SCIENCE ADVANCES 2025;11:eadr2802. [PMID: 39937902 PMCID: PMC11817938 DOI: 10.1126/sciadv.adr2802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2024] [Accepted: 01/13/2025] [Indexed: 02/14/2025]
20
Clemons RA, Smith CH, Zamudio KR. Primary regulatory T cell activator FOXP3 is present across Amphibia. Immunogenetics 2025;77:15. [PMID: 39945843 DOI: 10.1007/s00251-025-01372-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2024] [Accepted: 02/05/2025] [Indexed: 05/09/2025]
21
Claude SJ, Kamra K, Jung J, Kim HO, Kim JH. Elucidating the evolutionary dynamics of parasitism in Cuscuta: in-depth phylogenetic reconstruction and extensive plastomes reduction. BMC Genomics 2025;26:137. [PMID: 39939920 PMCID: PMC11823189 DOI: 10.1186/s12864-025-11324-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2024] [Accepted: 02/04/2025] [Indexed: 02/14/2025]  Open
22
Zhao Q, Xie F, He Q, Wang L, Guo K, Zhang C, Wang Y. Whole-genome relaxed selection and molecular constraints in Triplophysa under adapted Qinghai-Tibetan Plateau. BMC Genomics 2025;26:123. [PMID: 39924476 PMCID: PMC11808961 DOI: 10.1186/s12864-025-11290-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2024] [Accepted: 01/24/2025] [Indexed: 02/11/2025]  Open
23
Méndez MJN, Amini SS, Santos JC, Saal J, Wake MH, Ron SR, Tarvin RD. Caecilians maintain a functional long-wavelength-sensitive cone opsin gene despite signatures of relaxed selection and more than 200 million years of fossoriality. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.02.07.636964. [PMID: 39975400 PMCID: PMC11839130 DOI: 10.1101/2025.02.07.636964] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 02/21/2025]
24
Smith CR, Kaltenegger E, Teisher J, Moore AJ, Straub SCK, Livshultz T. Homospermidine synthase evolution and the origin(s) of pyrrolizidine alkaloids in Apocynaceae. AMERICAN JOURNAL OF BOTANY 2025;112:e16458. [PMID: 39887714 PMCID: PMC11848025 DOI: 10.1002/ajb2.16458] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Revised: 10/11/2024] [Accepted: 10/12/2024] [Indexed: 02/01/2025]
25
Arya M, Ghosh A, Tyagi K, Tyagi I, Bisht SS, Kumar V. Characterization of Complete Mitochondrial Genome of Badri Breed of Bos indicus (Bovidae: Bovinae): Selection Pressure and Comparative Analysis. Biochem Genet 2025;63:43-66. [PMID: 38407767 DOI: 10.1007/s10528-024-10691-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 01/05/2024] [Indexed: 02/27/2024]
26
York JM, Taylor TN, LaPotin S, Lu Y, Mueller U. Hymenopteran-specific TRPA channel from the Texas leaf cutter ant (Atta texana) is heat and cold activated and expression correlates with environmental temperature. INSECT SCIENCE 2025;32:301-320. [PMID: 38605428 PMCID: PMC11824891 DOI: 10.1111/1744-7917.13364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Revised: 03/05/2024] [Accepted: 03/07/2024] [Indexed: 04/13/2024]
27
Yang F, Cao LJ, Nguyen P, Ma ZZ, Chen JC, Song W, Wei SJ. Hierarchical architecture of neo-sex chromosomes and accelerated adaptive evolution in tortricid moths. Genome Res 2025;35:66-77. [PMID: 39762048 PMCID: PMC11789632 DOI: 10.1101/gr.279569.124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2024] [Accepted: 11/26/2024] [Indexed: 01/24/2025]
28
Zeng J, Zhang X, Huang C, Tian S, Zhao H. Dampened TLR2-mediated Inflammatory Signaling in Bats. Mol Biol Evol 2025;42:msae253. [PMID: 39663845 PMCID: PMC11702297 DOI: 10.1093/molbev/msae253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2024] [Revised: 11/29/2024] [Accepted: 12/03/2024] [Indexed: 12/13/2024]  Open
29
Masubuchi T, Chen L, Marcel N, Wen GA, Caron C, Zhang J, Zhao Y, Morris GP, Chen X, Hedrick SM, Lu LF, Wu C, Zou Z, Bui JD, Hui E. Functional differences between rodent and human PD-1 linked to evolutionary divergence. Sci Immunol 2025;10:eads6295. [PMID: 39752535 PMCID: PMC11774210 DOI: 10.1126/sciimmunol.ads6295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2024] [Accepted: 12/04/2024] [Indexed: 01/30/2025]
30
Barrett CF, Pace MC, Corbett CW, Kennedy AH, Thixton-Nolan HL, Freudenstein JV. Organellar phylogenomics at the epidendroid orchid base, with a focus on the mycoheterotrophic Wullschlaegelia. ANNALS OF BOTANY 2024;134:1207-1228. [PMID: 38804968 PMCID: PMC11688536 DOI: 10.1093/aob/mcae084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Accepted: 05/27/2024] [Indexed: 05/29/2024]
31
Pollard MD, Meyer WK, Puckett EE. Convergent relaxation of molecular constraint in herbivores reveals the changing role of liver and kidney functions across mammalian diets. Genome Res 2024;34:2176-2189. [PMID: 39578099 PMCID: PMC11694762 DOI: 10.1101/gr.278930.124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2024] [Accepted: 10/16/2024] [Indexed: 11/24/2024]
32
Sullivan SA, Orosco JC, Callejas-Hernández F, Blow F, Lee H, Ranallo-Benavidez T, Peters A, Raidal S, Girard YA, Johnson CK, Rogers K, Gerhold R, Mangelson H, Liachko I, Srivastava H, Chandler C, Berenberg D, Bonneau RA, Huang PJ, Yeh YM, Lee CC, Liu H, Tang P, Chen TW, Schatz MC, Carlton JM. Comparative genomics of the sexually transmitted parasite Trichomonas vaginalis reveals relaxed and convergent evolution and genes involved in spillover from birds to humans. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.12.22.629724. [PMID: 39763951 PMCID: PMC11703204 DOI: 10.1101/2024.12.22.629724] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/14/2025]
33
Kopania EEK, Thomas GWC, Hutter CR, Mortimer SME, Callahan CM, Roycroft E, Achmadi AS, Breed WG, Clark NL, Esselstyn JA, Rowe KC, Good JM. Sperm competition intensity shapes divergence in both sperm morphology and reproductive genes across murine rodents. Evolution 2024;79:11-27. [PMID: 39392918 DOI: 10.1093/evolut/qpae146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2024] [Revised: 09/19/2024] [Accepted: 10/09/2024] [Indexed: 10/13/2024]
34
Tom MT, Brand P, Bucks S, Zhang J, Escobar Huezo ME, Hansson BS, Bisch-Knaden S. Gene expansion in the hawkmoth Manduca sexta drives evolution of food-associated odorant receptors. iScience 2024;27:111317. [PMID: 39640564 PMCID: PMC11617253 DOI: 10.1016/j.isci.2024.111317] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2024] [Revised: 09/30/2024] [Accepted: 10/30/2024] [Indexed: 12/07/2024]  Open
35
Siozios S, Nadal-Jimenez P, Azagi T, Sprong H, Frost CL, Parratt SR, Taylor G, Brettell L, Liew KC, Croft L, King KC, Brockhurst MA, Hypša V, Novakova E, Darby AC, Hurst GDD. Genome dynamics across the evolutionary transition to endosymbiosis. Curr Biol 2024;34:5659-5670.e7. [PMID: 39549700 DOI: 10.1016/j.cub.2024.10.044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Revised: 04/12/2024] [Accepted: 10/15/2024] [Indexed: 11/18/2024]
36
Zuo B, Chen R, Tang X, Shao Y, Liu X, Nneji LM, Sun Y. Genomic Insights Into Genetic Basis of Evolutionary Conservatism and Innovation in Frogs. Integr Zool 2024. [PMID: 39663509 DOI: 10.1111/1749-4877.12931] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2024] [Revised: 10/12/2024] [Accepted: 11/11/2024] [Indexed: 12/13/2024]
37
Ward CM, Onetto CA, Borneman AR. Adaptation During the Shift from Entomopathogen to Endosymbiont Is Accompanied by Gene Loss and Intensified Selection. Genome Biol Evol 2024;16:evae251. [PMID: 39561190 PMCID: PMC11632363 DOI: 10.1093/gbe/evae251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2024] [Revised: 11/10/2024] [Accepted: 11/14/2024] [Indexed: 11/21/2024]  Open
38
Li J, Guo C, Xie M, Wang K, Wang X, Zou B, Hou F, Ran C, Bi S, Xu Y, Hua Y. Genomic signatures of sensory adaptation and evolution in pangolins. BMC Genomics 2024;25:1176. [PMID: 39633301 PMCID: PMC11616205 DOI: 10.1186/s12864-024-11063-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2024] [Accepted: 11/18/2024] [Indexed: 12/07/2024]  Open
39
Santos PKF, Kapheim KM. Convergent Evolution Associated with the Loss of Developmental Diapause May Promote Extended Lifespan in Bees. Genome Biol Evol 2024;16:evae255. [PMID: 39579066 PMCID: PMC11632380 DOI: 10.1093/gbe/evae255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2024] [Revised: 11/11/2024] [Accepted: 11/14/2024] [Indexed: 11/25/2024]  Open
40
de Cássia Bisio M, Dos Santos EM, Santos CA, Chahad-Ehlers S, de Brito RA. Molecular evolution and genetic diversity of defective chorion 1 in Anastrepha fraterculus and Anastrepha obliqua (Diptera, Tephritidae). Dev Genes Evol 2024;234:153-171. [PMID: 39509071 DOI: 10.1007/s00427-024-00723-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Accepted: 10/17/2024] [Indexed: 11/15/2024]
41
Vazquez JM, Lauterbur ME, Mottaghinia S, Bucci M, Fraser D, Gray-Sandoval G, Gaucherand L, Haidar ZR, Han M, Kohler W, Lama TM, Le Corf A, Loyer C, Maesen S, McMillan D, Li S, Lo J, Rey C, Capel SLR, Singer M, Slocum K, Thomas W, Tyburec JD, Villa S, Miller R, Buchalski M, Vazquez-Medina JP, Pfeffer S, Etienne L, Enard D, Sudmant PH. Extensive longevity and DNA virus-driven adaptation in nearctic Myotis bats. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.10.10.617725. [PMID: 39416019 PMCID: PMC11482938 DOI: 10.1101/2024.10.10.617725] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 10/19/2024]
42
Zarate S, Bertram MR, Rodgers C, Reed K, Pelzel-McCluskey A, Gomez-Romero N, Rodriguez LL, Mayo C, Mire C, Pond SLK, Velazquez-Salinas L. Phylogenomic Signatures of a Lineage of Vesicular Stomatitis Indiana Virus Circulating During the 2019-2020 Epidemic in the United States. Viruses 2024;16:1803. [PMID: 39599917 PMCID: PMC11598840 DOI: 10.3390/v16111803] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2024] [Revised: 11/14/2024] [Accepted: 11/15/2024] [Indexed: 11/29/2024]  Open
43
Magpali L, Ramos E, Picorelli A, Freitas L, Nery MF. Molecular evolution of toothed whale genes reveals adaptations to echolocating in different environments. BMC Genomics 2024;25:1049. [PMID: 39506652 PMCID: PMC11542384 DOI: 10.1186/s12864-024-10910-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Accepted: 10/16/2024] [Indexed: 11/08/2024]  Open
44
Low GW, Pavlova A, Gan HM, Ko MC, Sadanandan KR, Lee YP, Amos JN, Austin L, Falk S, Dowling DK, Sunnucks P. Accelerated differentiation of neo-W nuclear-encoded mitochondrial genes between two climate-associated bird lineages signals potential co-evolution with mitogenomes. Heredity (Edinb) 2024;133:342-354. [PMID: 39174672 PMCID: PMC11527876 DOI: 10.1038/s41437-024-00718-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2023] [Revised: 08/11/2024] [Accepted: 08/12/2024] [Indexed: 08/24/2024]  Open
45
Ruesink-Bueno IL, Drews A, O’Connor EA, Westerdahl H. Expansion of MHC-IIB Has Constrained the Evolution of MHC-IIA in Passerines. Genome Biol Evol 2024;16:evae236. [PMID: 39462092 PMCID: PMC11562119 DOI: 10.1093/gbe/evae236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2024] [Revised: 09/22/2024] [Accepted: 10/17/2024] [Indexed: 10/29/2024]  Open
46
Calamari ZT, Song A, Cohen E, Akter M, Das Roy R, Hallikas O, Christensen MM, Li P, Marangoni P, Jernvall J, Klein OD. Bank vole genomics links determinate and indeterminate growth of teeth. BMC Genomics 2024;25:1000. [PMID: 39472825 PMCID: PMC11523675 DOI: 10.1186/s12864-024-10901-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2024] [Accepted: 10/14/2024] [Indexed: 11/02/2024]  Open
47
Borujeni PM, Salavati R. Revisiting the functional annotation of TriTryp using sequence similarity tools. Heliyon 2024;10:e39243. [PMID: 39640808 PMCID: PMC11620254 DOI: 10.1016/j.heliyon.2024.e39243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Revised: 09/24/2024] [Accepted: 10/10/2024] [Indexed: 12/07/2024]  Open
48
Doellman MM, Sun Y, Barcenas-Peña A, Lumbsch HT, Grewe F. Rethinking asexuality: the enigmatic case of functional sexual genes in Lepraria (Stereocaulaceae). BMC Genomics 2024;25:1003. [PMID: 39455957 PMCID: PMC11515122 DOI: 10.1186/s12864-024-10898-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2024] [Accepted: 10/14/2024] [Indexed: 10/28/2024]  Open
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Farrand ZM, Galbreath KE, Teeter KC. Evidence of Intraspecific Adaptive Variation in the American Pika (Ochotona princeps) on a Continental Scale Using a Target Enrichment and Mitochondrial Genome Skimming Approach. Mol Ecol 2024:e17557. [PMID: 39425616 DOI: 10.1111/mec.17557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2024] [Revised: 08/23/2024] [Accepted: 09/26/2024] [Indexed: 10/21/2024]
50
Cicconardi F, Morris BJ, Martelossi J, Ray DA, Montgomery SH. Novel Sex-Specific Genes and Diverse Interspecific Expression in the Antennal Transcriptomes of Ithomiine Butterflies. Genome Biol Evol 2024;16:evae218. [PMID: 39373182 PMCID: PMC11500719 DOI: 10.1093/gbe/evae218] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 09/23/2024] [Accepted: 09/24/2024] [Indexed: 10/08/2024]  Open
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