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Lähteenaro M, Benda D, Straka J, Nylander JAA, Bergsten J. Phylogenomic analysis of Stylops reveals the evolutionary history of a Holarctic Strepsiptera radiation parasitizing wild bees. Mol Phylogenet Evol 2024; 195:108068. [PMID: 38554985 DOI: 10.1016/j.ympev.2024.108068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2024] [Revised: 03/07/2024] [Accepted: 03/24/2024] [Indexed: 04/02/2024]
Abstract
Holarctic Stylops is the largest genus of the enigmatic insect order Strepsiptera, twisted winged parasites. Members of Stylops are obligate endoparasites of Andrena mining bees and exhibit extreme sexual dimorphism typical of Strepsiptera. So far, molecular studies on Stylops have focused on questions on species delimitation. Here, we utilize the power of whole genome sequencing to infer the phylogeny of this morphologically challenging genus from thousands of loci. We use a species tree method, concatenated maximum likelihood analysis and Bayesian analysis with a relaxed clock model to reconstruct the phylogeny of 46 Stylops species, estimate divergence times, evaluate topological consistency across methods and infer the root position. Furthermore, the biogeographical history and coevolutionary patterns with host species are assessed. All methods recovered a well resolved topology with close to all nodes maximally supported and only a handful of minor topological variations. Based on the result, we find that included species can be divided into 12 species groups, seven of them including only Palaearctic species, three Nearctic and two were geographically mixed. We find a strongly supported root position between a clade formed by the spreta, thwaitesi and gwynanae species groups and the remaining species and that the sister group of Stylops is Eurystylops or Eurystylops + Kinzelbachus. Our results indicate that Stylops originated in the Western Palaearctic or Western Palaearctic and Nearctic in the early Neogene or late Paleogene, with four independent dispersal events to the Nearctic. Cophylogenetic analyses indicate that the diversification of Stylops has been shaped by both significant coevolution with the mining bee hosts and host-shifting. The well resolved and strongly supported phylogeny will provide a valuable phylogenetic basis for further studies into the fascinating world of Strepsipterans.
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Affiliation(s)
- Meri Lähteenaro
- Department of Zoology, Swedish Museum of Natural History, P. O. Box 50007, SE-104 05 Stockholm, Sweden; Department of Zoology, Faculty of Science, Stockholm University, SE-106 91 Stockholm, Sweden.
| | - Daniel Benda
- Department of Zoology, Faculty of Science, Charles University, Vinicna 7, CZ-128 44, Prague 2, Czech Republic; Department of Entomology, National Museum of the Czech Republic, Cirkusová 1740, CZ-19300 Prague 9, Czech Republic.
| | - Jakub Straka
- Department of Zoology, Faculty of Science, Charles University, Vinicna 7, CZ-128 44, Prague 2, Czech Republic.
| | - Johan A A Nylander
- Department of Bioinformatics and Genetics, Swedish Museum of Natural History, P.O. Box 50007, SE-106 91 Stockholm, Sweden.
| | - Johannes Bergsten
- Department of Zoology, Swedish Museum of Natural History, P. O. Box 50007, SE-104 05 Stockholm, Sweden; Department of Zoology, Faculty of Science, Stockholm University, SE-106 91 Stockholm, Sweden.
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2
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Mendoza AP, Muñoz-Maceda A, Ghersi BM, De La Puente M, Zariquiey C, Cavero N, Murillo Y, Sebastian M, Ibañez Y, Parker PG, Perez A, Uhart M, Robinson J, Olson SH, Rosenbaum MH. Diversity and prevalence of zoonotic infections at the animal-human interface of primate trafficking in Peru. PLoS One 2024; 19:e0287893. [PMID: 38324542 PMCID: PMC10849265 DOI: 10.1371/journal.pone.0287893] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Accepted: 09/01/2023] [Indexed: 02/09/2024] Open
Abstract
Wildlife trafficking creates favorable scenarios for intra- and inter-specific interactions that can lead to parasite spread and disease emergence. Among the fauna affected by this activity, primates are relevant due to their potential to acquire and share zoonoses - infections caused by parasites that can spread between humans and other animals. Though it is known that most primate parasites can affect multiple hosts and that many are zoonotic, comparative studies across different contexts for animal-human interactions are scarce. We conducted a multi-parasite screening targeting the detection of zoonotic infections in wild-caught monkeys in nine Peruvian cities across three contexts: captivity (zoos and rescue centers, n = 187); pet (households, n = 69); and trade (trafficked or recently confiscated, n = 132). We detected 32 parasite taxa including mycobacteria, simian foamyvirus, bacteria, helminths, and protozoa. Monkeys in the trade context had the highest prevalence of hemoparasites (including Plasmodium malariae/brasilianum, Trypanosoma cruzi, and microfilaria) and enteric helminths and protozoa were less common in pet monkeys. However, parasite communities showed overall low variation between the three contexts. Parasite richness (PR) was best explained by host genus and the city where the animal was sampled. Squirrel (genus Saimiri) and wooly (genus Lagothrix) monkeys had the highest PR, which was ~2.2 times the PR found in tufted capuchins (genus Sapajus) and tamarins (genus Saguinus/Leontocebus) in a multivariable model adjusted for context, sex, and age. Our findings illustrate that the threats of wildlife trafficking to One Health encompass exposure to multiple zoonotic parasites well-known to cause disease in humans, monkeys, and other species. We demonstrate these threats continue beyond the markets where wildlife is initially sold; monkeys trafficked for the pet market remain a reservoir for and contribute to the translocation of zoonotic parasites to households and other captive facilities where contact with humans is frequent. Our results have practical applications for the healthcare of rescued monkeys and call for urgent action against wildlife trafficking and ownership of monkeys as pets.
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Affiliation(s)
- A. Patricia Mendoza
- Wildlife Conservation Society - Peru Program, Lima, Peru
- Department of Biology, University of Missouri - Saint Louis, St Louis, Missouri, United States of America
- Asociación Neotropical Primate Conservation – Perú, Moyobamba, San Martín, Perú
| | - Ana Muñoz-Maceda
- School of Anthropology and Conservation, Durrell Institute of Conservation and Ecology, University of Kent, Canterbury, Kent, United Kingdom
| | - Bruno M. Ghersi
- Department of Infectious Disease and Global Health, Cummings School of Veterinary Medicine at Tufts University, North Grafton, Massachusetts, United States of America
| | | | | | - Nancy Cavero
- Wildlife Conservation Society - Peru Program, Lima, Peru
| | - Yovana Murillo
- Wildlife Conservation Society - Peru Program, Lima, Peru
| | | | - Yohani Ibañez
- Wildlife Conservation Society - Peru Program, Lima, Peru
| | - Patricia G. Parker
- Department of Biology, University of Missouri - Saint Louis, St Louis, Missouri, United States of America
| | - Alberto Perez
- Servicio Nacional de Sanidad y Calidad Agroalimentaria, Buenos Aires, Argentina
| | - Marcela Uhart
- One Health Institute, University of California - Davis, Davis, California, United States of America
| | - Janine Robinson
- School of Anthropology and Conservation, Durrell Institute of Conservation and Ecology, University of Kent, Canterbury, Kent, United Kingdom
| | - Sarah H. Olson
- Wildlife Conservation Society - Health Program, Bronx, New York, United States of America
| | - Marieke H. Rosenbaum
- Department of Infectious Disease and Global Health, Cummings School of Veterinary Medicine at Tufts University, North Grafton, Massachusetts, United States of America
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3
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Martinez V, Keith KD, Grace JK, Voelker G. Avian haemosporidians of breeding birds in the Davis Mountains sky-islands of west Texas, USA. Parasitology 2023; 150:1266-1276. [PMID: 38072659 PMCID: PMC10941211 DOI: 10.1017/s0031182023001087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Revised: 11/02/2023] [Accepted: 11/06/2023] [Indexed: 02/06/2024]
Abstract
Avian haemosporidians are protozoan parasites transmitted by insect vectors that infect birds worldwide, negatively impacting avian fitness and survival. However, the majority of haemosporidian diversity remains undescribed. Quantifying this diversity is critical to determining parasite–host relationships and host-switching potentials of parasite lineages as climate change induces both host and vector range shifts. In this study, we conducted a community survey of avian haemosporidians found in breeding birds on the Davis Mountains sky islands in west Texas, USA. We determined parasite abundance and host associations and compared our results to data from nearby regions. A total of 265 birds were screened and infections were detected in 108 birds (40.8%). Most positive infections were identified as Haemoproteus (36.2%), followed by Plasmodium (6.8%) and Leucocytozoon (0.8%). A total of 71 haemosporidian lineages were detected of which 39 were previously undescribed. We found that regional similarity influenced shared lineages, as a higher number of lineages were shared with avian communities in the sky islands of New Mexico compared to south Texas, the Texas Gulf Coast and central Mexico. We found that migratory status of avian host did not influence parasite prevalence, but that host phylogeny is likely an important driver.
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Affiliation(s)
- Viridiana Martinez
- Department of Ecology and Conservation Biology, Texas A&M University, College Station, TX, USA
| | - Katrina D Keith
- Department of Ecology and Conservation Biology, Texas A&M University, College Station, TX, USA
| | - Jacquelyn K Grace
- Department of Ecology and Conservation Biology, Texas A&M University, College Station, TX, USA
| | - Gary Voelker
- Department of Ecology and Conservation Biology, Texas A&M University, College Station, TX, USA
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Inumaru M, Nakamura K, Odagawa T, Suzuki M, Murata K, Sato Y. The first detection of avian haemosporidia from Culicoides biting midges in Japan, with notes on potential vector species and the transmission cycle. Vet Parasitol Reg Stud Reports 2023; 39:100840. [PMID: 36878625 DOI: 10.1016/j.vprsr.2023.100840] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Revised: 01/29/2023] [Accepted: 02/04/2023] [Indexed: 02/09/2023]
Abstract
BACKGROUND Biting midges (Ceratopogonidae) are capable of transmitting a variety of pathogens including viruses, trypanosomes and haemosporidia. The majority of Haemoproteus parasites are transmitted by biting midges predominantly of the genus Culicoides and are known to cause significant physical and reproductive impacts on both wild and domestic birds. In Japan, Haemoproteus had been detected from various avian hosts, but not from arthropod vectors. In this study, we investigated the prevalence of avian haemosporidia at an educational forest in central Japan in attempt to reveal possible vector species of Haemoproteus, which would help to better understand the transmission cycle of Haemoproteus within Japan and to develop preventative measures for captive and domestic birds. METHODS Biting midges were caught using UV light traps from 2016 to 2018. The collected samples were morphologically identified, and haemosporidian parasites were detected using PCR-based methods. The detected lineages were phylogenetically analyzed and compared with lineages previously detected from birds. Bloodmeal analyses were also carried out for part of the blood-fed individuals. RESULTS Six Haemoproteus lineages were detected from 17 of 1042 female Culicoides (1.63%), including three species (C. sigaensis, C. arakawae, and C. pictimargo) in which Haemoproteus was detected for the first time. All detected lineages were placed in the subgenus Parahaemoproteus clade and were previously detected from crows of central Japan, strongly suggesting that parasites of these genetic lineages are transmitted between Culicoides and crows. Two Plasmodium lineages were also detected but are thought to be transmitted between Culex mosquitoes and birds of the educational forest based on previous detections. No amplifications were seen in bloodmeal analysis, possibly due to insufficient amount of blood, denaturation via digestion, or insufficient detectability of the used protocol. CONCLUSION Haemoproteus DNA was detected from Culicoides for the first time in Japan, suggesting that transmission is possible within the country. These findings highlight the necessity to investigate Culicoides populations and Haemoproteus infections dynamics in Japan. However, vector competence could not be confirmed in this study and further studies are anticipated.
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Affiliation(s)
- Mizue Inumaru
- Laboratory of Biomedical Science, Department of Veterinary Medicine, College of Bioresource Sciences, Nihon University, Fujisawa, Kanagawa 252-0880, Japan; Department of Medical Entomology, National Institute of Infectious Diseases, Toyama 1-23-1, Shinjuku, Tokyo 162-8640, Japan
| | - Keita Nakamura
- Laboratory of Biomedical Science, Department of Veterinary Medicine, College of Bioresource Sciences, Nihon University, Fujisawa, Kanagawa 252-0880, Japan
| | - Taichi Odagawa
- Laboratory of Biomedical Science, Department of Veterinary Medicine, College of Bioresource Sciences, Nihon University, Fujisawa, Kanagawa 252-0880, Japan
| | - Momoka Suzuki
- Laboratory of Biomedical Science, Department of Veterinary Medicine, College of Bioresource Sciences, Nihon University, Fujisawa, Kanagawa 252-0880, Japan
| | - Koichi Murata
- Laboratory of Wildlife Science, Department of Animal Resource Sciences, College of Bioresource Sciences, Nihon University, Fujisawa, Kanagawa 252-0880, Japan
| | - Yukita Sato
- Laboratory of Biomedical Science, Department of Veterinary Medicine, College of Bioresource Sciences, Nihon University, Fujisawa, Kanagawa 252-0880, Japan.
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5
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Parejo-Pulido D, Mora-Rubio C, Marzal A, Magallanes S. Molecular characterization of haemosporidian and haemogregarine diversity in southwestern Iberian amphibians and reptiles. Parasitol Res 2023; 122:1139-1149. [PMID: 36933067 PMCID: PMC10097751 DOI: 10.1007/s00436-023-07814-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Accepted: 03/02/2023] [Indexed: 03/19/2023]
Abstract
The knowledge of the diversity and geographic distribution of parasite species is the first step towards understanding processes of global epidemiology and species conservation. Despite recent increases in research on haemosporidian and haemogregarine parasites of reptiles and amphibians, we still know little about their diversity and parasite-host interactions, especially in the Iberian Peninsula, where a few studies have been conducted. In this study, the haemosporidian and haemogregarine diversity and phylogenetic relationships of the parasites in southwestern Iberian amphibians and reptiles were assessed using PCR approaches on blood samples of 145 individuals from five amphibian and 13 reptile species. The amphibians did not present any of both groups of parasites studied. Regarding reptiles, five Hepatozoon, one Haemogregarina, and one Haemocystidum haplotypes were found infecting four different species, revealing new host records for these parasites. Among them, we found one new Haemocystidium haplotype and three new and a previously reported Hepatozoon haplotype from a north African snake. The latter finding suggests that some Hepatozoon parasites may not be host-specific and have large geographic ranges even crossing geographical barriers. These results increased the knowledge about the geographic distribution and the number of known host species of some reptile apicomplexan parasites, highlighting the great unexplored diversity of them in this region.
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Affiliation(s)
- Daniel Parejo-Pulido
- Instituto de Investigación en Recursos Cinegéticos (IREC), CSIC-UCLM-JCCM, Ronda de Toledo, 12, 13005, Ciudad Real, Spain
| | - Carlos Mora-Rubio
- Departamento de Anatomía Biología Celular y Zoología, Universidad de Extremadura, Avda. Elvas s/n, 06006, Badajoz, Spain
| | - Alfonso Marzal
- Departamento de Anatomía Biología Celular y Zoología, Universidad de Extremadura, Avda. Elvas s/n, 06006, Badajoz, Spain.,Grupo de Investigaciones en Fauna Silvestre, Universidad Nacional de San Martín, Jr. Maynas 1777, 22021, Tarapoto, Perú
| | - Sergio Magallanes
- Departamento de Anatomía Biología Celular y Zoología, Universidad de Extremadura, Avda. Elvas s/n, 06006, Badajoz, Spain. .,Department of Wetland Ecology (EBD-CSIC), Estación Biológica de Doñana, Avda. Américo Vespucio 26, E-41092, Seville, Spain.
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6
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Herrera JP, Moody J, Nunn CL. Predicting primate-parasite associations using exponential random graph models. J Anim Ecol 2023; 92:710-722. [PMID: 36633380 DOI: 10.1111/1365-2656.13883] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Accepted: 12/07/2022] [Indexed: 01/13/2023]
Abstract
Ecological associations between hosts and parasites are influenced by host exposure and susceptibility to parasites, and by parasite traits, such as transmission mode. Advances in network analysis allow us to answer questions about the causes and consequences of traits in ecological networks in ways that could not be addressed in the past. We used a network-based framework (exponential random graph models or ERGMs) to investigate the biogeographic, phylogenetic and ecological characteristics of hosts and parasites that affect the probability of interactions among nonhuman primates and their parasites. Parasites included arthropods, bacteria, fungi, protozoa, viruses and helminths. We investigated existing hypotheses, along with new predictors and an expanded host-parasite database that included 213 primate nodes, 763 parasite nodes and 2319 edges among them. Analyses also investigated phylogenetic relatedness, sampling effort and spatial overlap among hosts. In addition to supporting some previous findings, our ERGM approach demonstrated that more threatened hosts had fewer parasites, and notably, that this effect was independent of hosts also having a smaller geographic range. Despite having fewer parasites, threatened host species shared more parasites with other hosts, consistent with loss of specialist parasites and threat arising from generalist parasites that can be maintained in other, non-threatened hosts. Viruses, protozoa and helminths had broader host ranges than bacteria, or fungi, and parasites that infect non-primates had a higher probability of infecting more primate species. The value of the ERGM approach for investigating the processes structing host-parasite networks provided a more complete view on the biogeographic, phylogenetic and ecological traits that influence parasite species richness and parasite sharing among hosts. The results supported some previous analyses and revealed new associations that warrant future research, thus revealing how hosts and parasites interact to form ecological networks.
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Affiliation(s)
- James P Herrera
- Duke Lemur Center SAVA Conservation, Duke University, Durham, North Carolina, USA
| | - James Moody
- Department of Sociology, Duke University, Durham, North Carolina, USA
| | - Charles L Nunn
- Department of Evolutionary Anthropology, Duke University, Durham, North Carolina, USA.,Duke Global Health Institute, Duke University, Durham, North Carolina, USA
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7
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Vlček J, Miláček M, Vinkler M, Štefka J. Effect of population size and selection on Toll-like receptor diversity in populations of Galápagos mockingbirds. J Evol Biol 2023; 36:109-120. [PMID: 36398499 DOI: 10.1111/jeb.14121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Revised: 08/25/2022] [Accepted: 09/10/2022] [Indexed: 11/19/2022]
Abstract
The interactions of evolutionary forces are difficult to analyse in free-living populations. However, when properly understood, they provide valuable insights into evolutionary biology and conservation genetics. This is particularly important for the interplay of genetic drift and natural selection in immune genes that confer resistance to disease. The Galápagos Islands are inhabited by four closely related species of mockingbirds (Mimus spp.). We used 12 different-sized populations of Galápagos mockingbirds and one population of their continental relative northern mockingbird (Mimus polyglottos) to study the effects of genetic drift on the molecular evolution of immune genes, the Toll-like receptors (TLRs: TLR1B, TLR4 and TLR15). We found that neutral genetic diversity was positively correlated with island size, indicating an important effect of genetic drift. However, for TLR1B and TLR4, there was little correlation between functional (e.g., protein) diversity and island size, and protein structural properties were largely conserved, indicating only a limited effect of genetic drift on molecular phenotype. By contrast, TLR15 was less conserved and even its putative functional polymorphism correlated with island size. The patterns observed for the three genes suggest that genetic drift does not necessarily dominate selection even in relatively small populations, but that the final outcome depends on the degree of selection constraint that is specific for each TLR locus.
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Affiliation(s)
- Jakub Vlček
- Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic.,Department of Zoology, University of South Bohemia in České Budějovice Faculty of Science, České Budějovice, Czech Republic.,Department of Botany, Charles University Faculty of Science, Prague, Czech Republic
| | - Matěj Miláček
- Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic.,Department of Zoology, University of South Bohemia in České Budějovice Faculty of Science, České Budějovice, Czech Republic
| | - Michal Vinkler
- Department of Zoology, Charles University Faculty of Science, Prague, Czech Republic
| | - Jan Štefka
- Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic.,Department of Zoology, University of South Bohemia in České Budějovice Faculty of Science, České Budějovice, Czech Republic
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8
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Aguiar de Souza Penha V, Maia Chaves Bicalho Domingos F, Fecchio A, Bell JA, Weckstein JD, Ricklefs RE, Braga EM, de Abreu Moreira P, Soares L, Latta S, Tolesano-Pascoli G, Alquezar RD, Del-Claro K, Manica LT. Host life-history traits predict haemosporidian parasite prevalence in tanagers (Aves: Thraupidae). Parasitology 2022; 150:1-10. [PMID: 36226920 PMCID: PMC10090595 DOI: 10.1017/s0031182022001469] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2022] [Revised: 09/26/2022] [Accepted: 10/07/2022] [Indexed: 11/07/2022]
Abstract
Vector-borne parasites are important ecological drivers influencing life-history evolution in birds by increasing host mortality or susceptibility to new diseases. Therefore, understanding why vulnerability to infection varies within a host clade is a crucial task for conservation biology and for understanding macroecological life-history patterns. Here, we studied the relationship of avian life-history traits and climate on the prevalence of Plasmodium and Parahaemoproteus parasites. We sampled 3569 individual birds belonging to 53 species of the family Thraupidae. Individuals were captured from 2007 to 2018 at 92 locations. We created 2 phylogenetic generalized least-squares models with Plasmodium and Parahaemoproteus prevalence as our response variables, and with the following predictor variables: climate PC1, climate PC2, body size, mixed-species flock participation, incubation period, migration, nest height, foraging height, forest cover, and diet. We found that Parahaemoproteus and Plasmodium prevalence was higher in species inhabiting open habitats. Tanager species with longer incubation periods had higher Parahaemoproteus prevalence as well, and we hypothesize that these longer incubation periods overlap with maximum vector abundances, resulting in a higher probability of infection among adult hosts during their incubation period and among chicks. Lastly, we found that Plasmodium prevalence was higher in species without migratory behaviour, with mixed-species flock participation, and with an omnivorous or animal-derived diet. We discuss the consequences of higher infection prevalence in relation to life-history traits in tanagers.
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Affiliation(s)
| | | | - Alan Fecchio
- Centro de Investigación Esquel de Montaña y Estepa Patagónica (CIEMEP), CONICET – Universidad Nacional de la Patagonia San Juan Bosco, Esquel, Chubut, Argentina
| | - Jeffrey A. Bell
- Department of Biology, University of North Dakota, Grand Forks, USA
| | - Jason D. Weckstein
- Academy of Natural Sciences of Drexel University and Department of Biodiversity, Earth, and Environmental Science, Drexel University, Philadelphia, PA, USA
| | - Robert E. Ricklefs
- Department of Biology, University of Missouri–Saint Louis, Saint Louis, MO, USA
| | - Erika Martins Braga
- Malaria Laboratory, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | | | - Letícia Soares
- Research Associate, National Aviary, Pittsburgh, PA, USA
| | - Steven Latta
- Conservation and Field Research, National Aviary, Pittsburgh, PA, USA
| | - Graziela Tolesano-Pascoli
- Zoology Department, Institute of Biological Sciences, University of Brasilia, Brasilia, Distrito Federal, Brazil
| | - Renata Duarte Alquezar
- Animal Behavior Laboratory, Graduate Program in Ecology, University of Brasilia, Brasilia, Distrito Federal, Brazil
| | - Kleber Del-Claro
- Behavioral Ecology and Interactions Laboratory, Graduate Program in Ecology and Conservation of Natural Resources, Federal University of Uberlândia, Uberlândia, Minas Gerais, Brazil
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Huang X, Chen Z, Yang G, Xia C, Luo Q, Gao X, Dong L. Assemblages of Plasmodium and Related Parasites in Birds with Different Migration Statuses. Int J Mol Sci 2022; 23:ijms231810277. [PMID: 36142189 PMCID: PMC9499606 DOI: 10.3390/ijms231810277] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Revised: 08/25/2022] [Accepted: 08/30/2022] [Indexed: 12/03/2022] Open
Abstract
Migratory birds spend several months in their breeding grounds in sympatry with local resident birds and relatively shorter periods of time at stopover sites. During migration, parasites may be transmitted between migratory and resident birds. However, to what extent they share these parasites remains unclear. In this study, we compared the assemblages of haemosporidian parasites in migratory, resident, and passing birds, as well as the correlations between parasite assemblages and host phylogeny. Compared with passing birds, migratory birds were more likely to share parasites with resident birds. Shared lineages showed significantly higher prevalence rates than other lineages, indicating that common parasites are more likely to spill over from the current host to other birds. For shared lineages, the prevalence was significantly higher in resident birds than in migratory birds, suggesting that migratory birds pick up parasites at their breeding ground. Among the shared lineages, almost two-thirds presented no phylogenetic signal in their prevalence, indicating that parasite transmission among host species is weakly or not correlated with host phylogeny. Moreover, similarities between parasite assemblages are not correlated with either migration status or the phylogeny of hosts. Our results show that the prevalence, rather than host phylogeny, plays a central role in parasite transmission between migratory and resident birds in breeding grounds.
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10
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Robles-Fernández ÁL, Santiago-Alarcon D, Lira-Noriega A. Wildlife susceptibility to infectious diseases at global scales. Proc Natl Acad Sci U S A 2022; 119:e2122851119. [PMID: 35994656 PMCID: PMC9436312 DOI: 10.1073/pnas.2122851119] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Accepted: 07/11/2022] [Indexed: 11/18/2022] Open
Abstract
Disease transmission prediction across wildlife is crucial for risk assessment of emerging infectious diseases. Susceptibility of host species to pathogens is influenced by the geographic, environmental, and phylogenetic context of the specific system under study. We used machine learning to analyze how such variables influence pathogen incidence for multihost pathogen assemblages, including one of direct transmission (coronaviruses and bats) and two vector-borne systems (West Nile Virus [WNV] and birds, and malaria and birds). Here we show that this methodology is able to provide reliable global spatial susceptibility predictions for the studied host-pathogen systems, even when using a small amount of incidence information (i.e., [Formula: see text] of information in a database). We found that avian malaria was mostly affected by environmental factors and by an interaction between phylogeny and geography, and WNV susceptibility was mostly influenced by phylogeny and by the interaction between geographic and environmental distances, whereas coronavirus susceptibility was mostly affected by geography. This approach will help to direct surveillance and field efforts providing cost-effective decisions on where to invest limited resources.
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Affiliation(s)
- Ángel L. Robles-Fernández
- Facultad de Física, Universidad Veracruzana, 91000 Xalapa, México
- School of Life Sciences, Arizona State University, Tempe, AZ 85281
| | | | - Andrés Lira-Noriega
- Red de Estudios Moleculares Avanzados, Instituto de Ecología, A.C., 91073 Xalapa, México
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11
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Cruz-Laufer AJ, Artois T, Koblmüller S, Pariselle A, Smeets K, Van Steenberge M, Vanhove MPM. Explosive networking: The role of adaptive host radiations and ecological opportunity in a species-rich host-parasite assembly. Ecol Lett 2022; 25:1795-1812. [PMID: 35726545 DOI: 10.1111/ele.14059] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Revised: 02/22/2022] [Accepted: 05/13/2022] [Indexed: 01/09/2023]
Abstract
Many species-rich ecological communities emerge from adaptive radiation events. Yet the effects of adaptive radiation on community assembly remain poorly understood. Here, we explore the well-documented radiations of African cichlid fishes and their interactions with the flatworm gill parasites Cichlidogyrus spp., including 10,529 reported infections and 477 different host-parasite combinations collected through a survey of peer-reviewed literature. We assess how evolutionary, ecological, and morphological parameters determine host-parasite meta-communities affected by adaptive radiation events through network metrics, host repertoire measures, and network link prediction. The hosts' evolutionary history mostly determined host repertoires of the parasites. Ecological and evolutionary parameters predicted host-parasite interactions. Generally, ecological opportunity and fitting have shaped cichlid-Cichlidogyrus meta-communities suggesting an invasive potential for hosts used in aquaculture. Meta-communities affected by adaptive radiations are increasingly specialised with higher environmental stability. These trends should be verified across other systems to infer generalities in the evolution of species-rich host-parasite networks.
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Affiliation(s)
- Armando J Cruz-Laufer
- Faculty of Sciences, Centre for Environmental Sciences, Research Group Zoology: Biodiversity and Toxicology, UHasselt - Hasselt University, Diepenbeek, Belgium
| | - Tom Artois
- Faculty of Sciences, Centre for Environmental Sciences, Research Group Zoology: Biodiversity and Toxicology, UHasselt - Hasselt University, Diepenbeek, Belgium
| | | | - Antoine Pariselle
- ISEM, CNRS, IRD, Université de Montpellier, Montpellier, France.,Faculty of Sciences, Laboratory "Biodiversity, Ecology and Genome", Research Centre "Plant and Microbial Biotechnology, Biodiversity and Environment", Mohammed V University, Rabat, Morocco
| | - Karen Smeets
- Faculty of Sciences, Centre for Environmental Sciences, Research Group Zoology: Biodiversity and Toxicology, UHasselt - Hasselt University, Diepenbeek, Belgium
| | - Maarten Van Steenberge
- Faculty of Sciences, Centre for Environmental Sciences, Research Group Zoology: Biodiversity and Toxicology, UHasselt - Hasselt University, Diepenbeek, Belgium.,Laboratory of Biodiversity and Evolutionary Genomics, KU Leuven, Leuven, Belgium.,Operational Directorate Taxonomy and Phylogeny, Royal Belgian Institute of Natural Sciences, Brussels, Belgium
| | - Maarten P M Vanhove
- Faculty of Sciences, Centre for Environmental Sciences, Research Group Zoology: Biodiversity and Toxicology, UHasselt - Hasselt University, Diepenbeek, Belgium.,Laboratory of Biodiversity and Evolutionary Genomics, KU Leuven, Leuven, Belgium
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12
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Voinson M, Nunn CL, Goldberg A. Primate malarias as a model for cross-species parasite transmission. eLife 2022; 11:e69628. [PMID: 35086643 PMCID: PMC8798051 DOI: 10.7554/elife.69628] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2021] [Accepted: 01/14/2022] [Indexed: 12/16/2022] Open
Abstract
Parasites regularly switch into new host species, representing a disease burden and conservation risk to the hosts. The distribution of these parasites also gives insight into characteristics of ecological networks and genetic mechanisms of host-parasite interactions. Some parasites are shared across many species, whereas others tend to be restricted to hosts from a single species. Understanding the mechanisms producing this distribution of host specificity can enable more effective interventions and potentially identify genetic targets for vaccines or therapies. As ecological connections between human and local animal populations increase, the risk to human and wildlife health from novel parasites also increases. Which of these parasites will fizzle out and which have the potential to become widespread in humans? We consider the case of primate malarias, caused by Plasmodium parasites, to investigate the interacting ecological and evolutionary mechanisms that put human and nonhuman primates at risk for infection. Plasmodium host switching from nonhuman primates to humans led to ancient introductions of the most common malaria-causing agents in humans today, and new parasite switching is a growing threat, especially in Asia and South America. Based on a wild host-Plasmodium occurrence database, we highlight geographic areas of concern and potential areas to target further sampling. We also discuss methodological developments that will facilitate clinical and field-based interventions to improve human and wildlife health based on this eco-evolutionary perspective.
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Affiliation(s)
- Marina Voinson
- Department of Evolutionary Anthropology, Duke UniversityDurhamUnited States
| | - Charles L Nunn
- Department of Evolutionary Anthropology, Duke UniversityDurhamUnited States
- Duke Global Health, Duke UniversityDurhamUnited States
| | - Amy Goldberg
- Department of Evolutionary Anthropology, Duke UniversityDurhamUnited States
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13
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Euclydes L, De La Torre GM, Dudczak AC, Melo FTDV, Campião KM. Ecological specificity explains infection parameters of anuran parasites at different scales. Parasitology 2022:1-8. [PMID: 35195062 DOI: 10.1017/s0031182022000087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Understanding the determinants of parasite infection in different hosts is one of the main goals of disease ecology. Evaluating the relationship between parasite–host specificity and infection parameters within host communities and populations may contribute to this understanding. Here we propose two measures of specificity that encompasses phylogenetic and ecological relatedness among hosts and investigated how such metrics explain parasite infection prevalence and mean infection intensity (MII). We analysed the parasites associated with an anuran community in an area of Atlantic Forest and used the number of infected hosts and the net relatedness index to calculate the phylogenetic and ecological specificities of the parasites. These specificity measures were related to infection metrics (prevalence and MII) with generalized linear mixed models at community (all hosts) and population (infected host species) scales. Parasite prevalence was correlated with the number of infected hosts and, when considering only multi-host parasites, was positively related to parasite ecological specificity at community and population scales. Thus, parasite species have similar prevalences in ecologically closer hosts. No relationship was found for parasite MII. Incorporating ecological characteristics of hosts in parasite specificity analyses improves the detection of patterns of specificity across scales.
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Affiliation(s)
- Lorena Euclydes
- Department of Zoology, Faculty of Biological Sciences, Federal University of Paraná, Curitiba, Paraná81531-980, Brazil
| | - Gabriel M De La Torre
- Department of Zoology, Faculty of Biological Sciences, Federal University of Paraná, Curitiba, Paraná81531-980, Brazil
| | - Amanda Caroline Dudczak
- Department of Zoology, Faculty of Biological Sciences, Federal University of Paraná, Curitiba, Paraná81531-980, Brazil
| | - Francisco Tiago de Vasconcelos Melo
- Laboratory of Cell Biology and Helminthology 'Prof. Dr. Reinalda Marisa Lanfredi', Institute of Biological Sciences, Federal University of Pará, Belém, Pará66075-110, Brazil
| | - Karla Magalhães Campião
- Department of Zoology, Faculty of Biological Sciences, Federal University of Paraná, Curitiba, Paraná81531-980, Brazil
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14
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Apigo A, Oono R. Plant abundance, but not plant evolutionary history, shapes patterns of host specificity in foliar fungal endophytes. Ecosphere 2022. [DOI: 10.1002/ecs2.3879] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Affiliation(s)
- Austen Apigo
- Department of Ecology, Evolution, and Marine Biology University of California Santa Barbara California 93106 USA
| | - Ryoko Oono
- Department of Ecology, Evolution, and Marine Biology University of California Santa Barbara California 93106 USA
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15
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Contrasting drivers of diversity in hosts and parasites across the tropical Andes. Proc Natl Acad Sci U S A 2021; 118:2010714118. [PMID: 33731475 DOI: 10.1073/pnas.2010714118] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Abstract
Geographic turnover in community composition is created and maintained by eco-evolutionary forces that limit the ranges of species. One such force may be antagonistic interactions among hosts and parasites, but its general importance is unknown. Understanding the processes that underpin turnover requires distinguishing the contributions of key abiotic and biotic drivers over a range of spatial and temporal scales. Here, we address these challenges using flexible, nonlinear models to identify the factors that underlie richness (alpha diversity) and turnover (beta diversity) patterns of interacting host and parasite communities in a global biodiversity hot spot. We sampled 18 communities in the Peruvian Andes, encompassing ∼1,350 bird species and ∼400 hemosporidian parasite lineages, and spanning broad ranges of elevation, climate, primary productivity, and species richness. Turnover in both parasite and host communities was most strongly predicted by variation in precipitation, but secondary predictors differed between parasites and hosts, and between contemporary and phylogenetic timescales. Host communities shaped parasite diversity patterns, but there was little evidence for reciprocal effects. The results for parasite communities contradicted the prevailing view that biotic interactions filter communities at local scales while environmental filtering and dispersal barriers shape regional communities. Rather, subtle differences in precipitation had strong, fine-scale effects on parasite turnover while host-community effects only manifested at broad scales. We used these models to map bird and parasite turnover onto the ecological gradients of the Andean landscape, illustrating beta-diversity hot spots and their mechanistic underpinnings.
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16
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Messina S, Edwards DP, Van Houtte N, Tomassi S, Benedick S, Eens M, Costantini D. Impacts of selective logging on haemosporidian infection and physiological correlates in tropical birds. Int J Parasitol 2021; 52:87-96. [PMID: 34450133 DOI: 10.1016/j.ijpara.2021.07.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Revised: 07/12/2021] [Accepted: 07/15/2021] [Indexed: 12/24/2022]
Abstract
Tropical forest degradation affects host-parasite interactions, determining the probability of animals acquiring an infection. The activation of an immune response to fight off infections requires energy and other resources such as antioxidants which may be redirected from growth and reproduction. A key question is how selective logging-the most common form of tropical forest degradation-impacts the prevalence of avian haemosporidian infection and its correlated physiological responses (nutritional and oxidative status markers). We investigated the prevalence of Plasmodium, Haemoproteus, and Leucocytozoon parasites in 14 understorey bird species in lowland, logged and unlogged, old-growth forests of Borneo. Prevalences of infections were similar between selectively logged and unlogged forests. To explore nutritional and oxidative status effects of haemosporidian infections, we examined associations between infections and plasma proteins, plasma triglycerides, and multiple blood-based markers of oxidative status, testing for an impact of selective logging on those markers. Birds infected with Plasmodium showed higher levels of plasma proteins and non-enzymatic antioxidant capacity, and lower levels of plasma triglycerides and glutathione, compared with haemosporidian-free individuals. Conversely, birds infected with Haemoproteus showed no changes in nutritional or physiological markers compared with uninfected individuals. These results indicate higher metabolic and physiological costs of controlling Plasmodium infection, compared with Haemoproteus, possibly due to higher pathogenicity of Plasmodium. Selectively logged forests had no effect on the responses of birds to infection, suggesting that the environmental conditions of degraded forests do not appear to induce any appreciable physiological demands in parasitised birds.
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Affiliation(s)
- Simone Messina
- Behavioural Ecology & Ecophysiology Group, Department of Biology, University of Antwerp, Universiteitsplein 1, 2610 Wilrijk, Belgium.
| | - David Paul Edwards
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - Natalie Van Houtte
- Evolutionary Ecology Group, Department of Biology, University of Antwerp, Universiteitsplein 1, 2610 Wilrijk, Belgium
| | - Suzanne Tomassi
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - Suzan Benedick
- School of Sustainable Agriculture, Universiti Malaysia Sabah, Malaysia
| | - Marcel Eens
- Behavioural Ecology & Ecophysiology Group, Department of Biology, University of Antwerp, Universiteitsplein 1, 2610 Wilrijk, Belgium
| | - David Costantini
- UMR 7221 CNRS/MNHN, Muséum National d'Histoirie Naturelle, Sorbonne Universités, 7 rue Cuvier, 75005 Paris, France
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17
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Yang G, He H, Zhang G, Zhao W, Zhou J, Qian Y, Huang X, Dong L. Neglected parasite reservoirs in wetlands: Prevalence and diversity of avian haemosporidians in waterbird communities in Northeast China. Int J Parasitol Parasites Wildl 2021; 15:177-183. [PMID: 34141566 PMCID: PMC8182418 DOI: 10.1016/j.ijppaw.2021.04.013] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2021] [Revised: 04/12/2021] [Accepted: 04/26/2021] [Indexed: 11/28/2022]
Abstract
The diversity of waterbirds is threatened, and haemosporidian parasite infection is considered one of the most important causative factors. However, to date, only a few studies focusing on specific parasite species have been carried out, which cannot reflect the general patterns at the community level. To test whether the reported haemosporidian diversity in waterbirds is underestimated, we estimated the prevalence and lineage diversity of avian haemosporidian parasites in 353 waterbirds from 26 species in the Tumuji National Nature Reserve, Northeast China, as well as the host-parasite associations. According to the molecular analysis of cytochrome b (cyt b) barcode sequences, 28.3% of the birds were infected by 49 distinct parasite lineages, including 11 Plasmodium, 12 Haemoproteus, and 26 Leucocytozoon lineages, of which 39 were novel. The highest prevalence was contributed by Leucocytozoon (13.31%), followed by Plasmodium (13.03%) and Haemoproteus (4.25%), which suggested that waterbirds were infected to a lesser extent by Haemoproteus than by the other two genera. Among the most sampled birds, species belonging to Anatidae appeared to be susceptible to Leucocytozoon but resistant to Plasmodium, while Rallidae presented the opposite pattern. On the phylogenetic tree, most of the Leucocytozoon lineages detected in Anatidae clustered together and formed two well-supported clades, while lineages restricted to Gruidae were distantly related to other parasites in all three genera. SW5 was the most abundant lineage and therefore might be a major threat to waterbirds; among the hosts, the common coot harboured the highest diversity of parasite lineages and thus could act as a reservoir for potential transmission. This is the first study of avian haemosporidian infections in a wild waterbird community in Asia. Our findings have doubled the number of lineages recorded in waterbirds, broadened our understanding of host-parasite associations, and addressed the importance of studying haemosporidian infections in wild waterbird conservation.
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Affiliation(s)
- Guocheng Yang
- MOE Key Laboratory for Biodiversity Science and Ecological Engineering, College of Life Sciences, Beijing Normal University, Beijing, 100875, China
| | - Haiyan He
- MOE Key Laboratory for Biodiversity Science and Ecological Engineering, College of Life Sciences, Beijing Normal University, Beijing, 100875, China
| | - Guogang Zhang
- Key Laboratory of Forest Protection of National Forestry and Grassland Administration, National Bird Banding Center of China, Research Institute of Forest Ecology, Environment and Protection, Chinese Academy of Forestry, Beijing, 100091, China
| | - Wenyu Zhao
- MOE Key Laboratory for Biodiversity Science and Ecological Engineering, College of Life Sciences, Beijing Normal University, Beijing, 100875, China
| | - Jingying Zhou
- Tumuji National Nature Reserve of Inner Mongolia, Zhalaiteqi, Inner Mongolia Autonomous Region, 137600, China
| | - Ying Qian
- Tumuji National Nature Reserve of Inner Mongolia, Zhalaiteqi, Inner Mongolia Autonomous Region, 137600, China
| | - Xi Huang
- MOE Key Laboratory for Biodiversity Science and Ecological Engineering, College of Life Sciences, Beijing Normal University, Beijing, 100875, China
| | - Lu Dong
- MOE Key Laboratory for Biodiversity Science and Ecological Engineering, College of Life Sciences, Beijing Normal University, Beijing, 100875, China
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18
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First records of prevalence and diversity of avian haemosporidia in snipe species (genus Gallinago) of Japan. INTERNATIONAL JOURNAL FOR PARASITOLOGY-PARASITES AND WILDLIFE 2021; 16:5-17. [PMID: 34377664 PMCID: PMC8326977 DOI: 10.1016/j.ijppaw.2021.07.007] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Revised: 07/12/2021] [Accepted: 07/18/2021] [Indexed: 11/20/2022]
Abstract
Migratory birds are important carriers of pathogens such as viruses, bacteria and protozoa. Avian haemosporidia have been detected from many wild birds of Japan, but the infection status of migratory birds and transmission area are still largely unknown. Gallinago snipes are long-distance migratory shorebirds, and five species migrate to or through Japan, including Latham's snipe which is near threatened. Haemosporidian parasites in four snipe species were investigated to understand the role of migratory birds in the transmission of avian haemosporidia. Namely, this study aimed: i) to investigate differences in parasite prevalence and related factors explaining infection likelihood among these migratory species, ii) to explore the diversity in haemosporidian lineages and possible transmission areas, and iii) to assess the possibility of morphological effects of infection. Blood samples were collected from snipes caught in central and southwest Japan during migration. Parasites cytb gene DNA were detected via PCR-based testing, and detected lineages were phylogenetically analyzed. Additionally, factors related to prevalence and morphological effects of infection were statistically tested. 383 birds from four Gallinago snipe species were caught, showing higher overall prevalence of avian haemosporidia (17.8 %) than reported in other wader species in previous studies. This high infection rate is presumably due to increased contact with vector insects, resultant of environmental preferences. The prevalence of Plasmodium spp. Was higher in Swinhoe's snipes, while Haemoproteus spp. Was higher in Latham's snipes. These differences are thought to be related to ecological factors including habitat use, distribution and migratory route. Six lineages detected from juveniles indicate transmission between the breeding and sampling area. Contrary to expectations, a direct link between morphological features and haemosporidian parasite infection were not detected. These findings provide valuable information for conservation of this endangered migratory bird group. Further studies linking biological and parasitological research are anticipated to contribute to conservational actions.
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19
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Assessment of Associations between Malaria Parasites and Avian Hosts-A Combination of Classic System and Modern Molecular Approach. BIOLOGY 2021; 10:biology10070636. [PMID: 34356491 PMCID: PMC8301060 DOI: 10.3390/biology10070636] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/06/2021] [Revised: 06/20/2021] [Accepted: 07/01/2021] [Indexed: 11/28/2022]
Abstract
Simple Summary Throughout history, frequent outbreaks of diseases in humans have occurred following transmission from animals. While some diseases can jump between birds and mammals, others are stuck to closely related species. Understanding the mechanisms of host–parasite associations will enable us to predict the outbreaks of diseases and will therefore be important to society and ecological health. For decades, scientists have attempted to reveal how host–parasite associations are formed and persist. The key is to assess the ability of the parasite to infect and reproduce within the host without killing the host. Related studies have faced numerous challenges, but technical advances are providing solutions and are gradually broadening our understanding. In this review, I use bird malaria and related blood parasites as a model system and summarize the important advances in techniques and perspectives and how they provide new approaches for understanding the evolution of host–parasite associations to further predict disease outbreaks. Abstract Avian malaria and related haemosporidian parasites are responsible for fitness loss and mortality in susceptible bird species. This group of globally distributed parasites has long been used as a classical system for investigating host–parasite associations. The association between a parasite and its hosts can be assessed by the prevalence in the host population and infection intensity in a host individual, which, respectively, reflect the ability of the parasite to infect the host and reproduce within the host. However, the latter has long been poorly investigated due to numerous challenges, such as lack of general molecular markers and limited sensitivity of traditional methods, especially when analysing naturally infected birds. The recent development of genetic databases, together with novel molecular methodologies, has shed light on this long-standing problem. Real-time quantitative PCR has enabled more accurate quantification of avian haemosporidian parasites, and digital droplet PCR further improved experimental sensitivity and repeatability of quantification. In recent decades, parallel studies have been carried out all over the world, providing great opportunities for exploring the adaptation of haemosporidian parasites to different hosts and the variations across time and space, and further investigating the coevolutionary history between parasites and their hosts. I hereby review the most important milestones in diagnosis techniques of avian haemosporidian parasites and illustrate how they provide new insights for understanding host–parasite associations.
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20
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Roth AM, Keiser CN, Williams JB, Gee JM. Prevalence and intensity of avian malaria in a quail hybrid zone. Ecol Evol 2021; 11:8123-8135. [PMID: 34188875 PMCID: PMC8216944 DOI: 10.1002/ece3.7645] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2020] [Revised: 04/14/2021] [Accepted: 04/19/2021] [Indexed: 01/12/2023] Open
Abstract
Hybrid zones have been described as natural laboratories by researchers who study speciation and the various mechanisms that may affect gene flow. The evolutionary consequences of hybridization depend not only on reproductive compatibility between sympatric species, but also on factors like vulnerability to each other's predators and parasites. We examined infection patterns of the blood parasite Haemoproteus lophortyx, a causative agent of avian malaria, at a site in the contact zone between California quail (Callipepla californica) and Gambel's quail (C. gambelii). Controlling for the potential influence of sex and year, we tested whether species identity predicted infection status and intensity. We found that infection prevalence was lower in California and hybrid quail compared with Gambel's quail. However, infected California and hybrid quail had higher infection intensities than Gambel's quail. California and hybrid quail exhibited no significant differences in prevalence or intensity of infection. These findings suggest that infection by H. lophortyx has the potential to influence species barrier dynamics in this system; however, more work is necessary to determine the exact evolutionary consequences of this blood parasite on hybridization.
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Affiliation(s)
| | - Carl N. Keiser
- Department of BiologyUniversity of FloridaGainesvilleFLUSA
| | - Judson B. Williams
- Department of Ecology and Evolutionary BiologyPrinceton UniversityPrincetonNJUSA
- Present address:
Department of SurgeryDuke UniversityRaleighNCUSA
| | - Jennifer M. Gee
- Department of Ecology and Evolutionary BiologyPrinceton UniversityPrincetonNJUSA
- Present address:
James San Jacinto Mountains ReserveUniversity of California – RiversideUniversity of California Natural Reserve SystemIdyllwildCAUSA
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21
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Starkloff NC, Turner WC, FitzGerald AM, Oftedal MC, Martinsen ES, Kirchman JJ. Disentangling the effects of host relatedness and elevation on haemosporidian parasite turnover in a clade of songbirds. Ecosphere 2021. [DOI: 10.1002/ecs2.3497] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Affiliation(s)
- Naima C. Starkloff
- Department of Biological Sciences University at Albany, State University of New York Albany New York12222USA
- New York State Museum Albany New York12230USA
| | - Wendy C. Turner
- Department of Biological Sciences University at Albany, State University of New York Albany New York12222USA
| | - Alyssa M. FitzGerald
- Department of Biological Sciences University at Albany, State University of New York Albany New York12222USA
- New York State Museum Albany New York12230USA
- Institute of Marine Sciences University of California Santa Cruz Santa Cruz California95064USA
| | - Michelle C. Oftedal
- Department of Biological Sciences University at Albany, State University of New York Albany New York12222USA
- New York State Museum Albany New York12230USA
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22
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Schatz AM, Park AW. Host and parasite traits predict cross-species parasite acquisition by introduced mammals. Proc Biol Sci 2021; 288:20210341. [PMID: 33947240 PMCID: PMC8097221 DOI: 10.1098/rspb.2021.0341] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Accepted: 04/01/2021] [Indexed: 01/02/2023] Open
Abstract
Species invasions and range shifts can lead to novel host-parasite communities, but we lack general rules on which new associations are likely to form. While many studies examine parasite sharing among host species, the directionality of transmission is typically overlooked, impeding our ability to derive principles of parasite acquisition. Consequently, we analysed parasite records from the non-native ranges of 11 carnivore and ungulate species. Using boosted regression trees, we modelled parasite acquisition within each zoogeographic realm of a focal host's non-native range, using a suite of predictors characterizing the parasites themselves and the host community in which they live. We found that higher parasite prevalence among established hosts increases the likelihood of acquisition, particularly for generalist parasites. Non-native host species are also more likely to acquire parasites from established host species to which they are closely related; however, the acquisition of several parasite groups is biased to phylogenetically specialist parasites, indicating potential costs of parasite generalism. Statistical models incorporating these features provide an accurate prediction of parasite acquisition, indicating that measurable host and parasite traits can be used to estimate the likelihood of new host-parasite associations forming. This work provides general rules to help anticipate novel host-parasite associations created by climate change and other anthropogenic influences.
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Affiliation(s)
- Annakate M. Schatz
- Odum School of Ecology, University of Georgia, Athens, GA, USA
- Center for the Ecology of Infectious Diseases, University of Georgia, Athens, GA, USA
| | - Andrew W. Park
- Odum School of Ecology, University of Georgia, Athens, GA, USA
- Center for the Ecology of Infectious Diseases, University of Georgia, Athens, GA, USA
- Department of Infectious Diseases, College of Veterinary Medicine, University of Georgia, Athens, GA, USA
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23
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Barrow LN, Bauernfeind SM, Cruz PA, Williamson JL, Wiley DL, Ford JE, Baumann MJ, Brady SS, Chavez AN, Gadek CR, Galen SC, Johnson AB, Mapel XM, Marroquin-Flores RA, Martinez TE, McCullough JM, McLaughlin JE, Witt CC. Detecting turnover among complex communities using null models: a case study with sky-island haemosporidian parasites. Oecologia 2021; 195:435-451. [PMID: 33484348 DOI: 10.1007/s00442-021-04854-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2020] [Accepted: 01/08/2021] [Indexed: 11/26/2022]
Abstract
Turnover in species composition between sites, or beta diversity, is a critical component of species diversity that is typically influenced by geography, environment, and biotic interactions. Quantifying turnover is particularly challenging, however, in multi-host, multi-parasite assemblages where undersampling is unavoidable, resulting in inflated estimates of turnover and uncertainty about its spatial scale. We developed and implemented a framework using null models to test for community turnover in avian haemosporidian communities of three sky islands in the southwestern United States. We screened 776 birds for haemosporidian parasites from three genera (Parahaemoproteus, Plasmodium, and Leucocytozoon) by amplifying and sequencing a mitochondrial DNA barcode. We detected infections in 280 birds (36.1%), sequenced 357 infections, and found a total of 99 parasite haplotypes. When compared to communities simulated from a regional pool, we observed more unique, single-mountain haplotypes and fewer haplotypes shared among three mountain ranges than expected, indicating that haemosporidian communities differ to some degree among adjacent mountain ranges. These results were robust even after pruning datasets to include only identical sets of host species, and they were consistent for two of the three haemosporidian genera. The two more distant mountain ranges were more similar to each other than the one located centrally, suggesting that the differences we detected were due to stochastic colonization-extirpation dynamics. These results demonstrate that avian haemosporidian communities of temperate-zone forests differ on relatively fine spatial scales between adjacent sky islands. Null models are essential tools for testing the spatial scale of turnover in complex, undersampled, and poorly known systems.
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Affiliation(s)
- Lisa N Barrow
- Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM, USA
- Department of Evolution, Ecology and Organismal Biology, The Ohio State University, Columbus, OH, USA
| | - Selina M Bauernfeind
- Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM, USA
| | - Paxton A Cruz
- Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM, USA
| | - Jessie L Williamson
- Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM, USA
| | - Daniele L Wiley
- Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM, USA
| | - John E Ford
- Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM, USA
| | - Matthew J Baumann
- Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM, USA
| | - Serina S Brady
- Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM, USA
| | - Andrea N Chavez
- Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM, USA
- Bureau of Land Management, Rio Puerco District Office, Albuquerque, NM, USA
- Cibola National Forest and National Grasslands, Albuquerque, NM, USA
| | - Chauncey R Gadek
- Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM, USA
| | - Spencer C Galen
- Department of Ornithology, Academy of Natural Sciences of Drexel University, Philadelphia, PA, USA
- Biology Department, University of Scranton, Scranton, PA, USA
| | - Andrew B Johnson
- Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM, USA
| | - Xena M Mapel
- Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM, USA
| | - Rosario A Marroquin-Flores
- Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM, USA
- School of Biological Sciences, Illinois State University, Normal, IL, USA
| | - Taylor E Martinez
- Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM, USA
- Department of Molecular Medicine and Pharmacology, University of South Florida, Tampa, FL, USA
| | - Jenna M McCullough
- Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM, USA
| | - Jade E McLaughlin
- Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM, USA
| | - Christopher C Witt
- Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM, USA.
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24
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Galen SC, Borner J, Perkins SL, Weckstein JD. Phylogenomics from transcriptomic "bycatch" clarify the origins and diversity of avian trypanosomes in North America. PLoS One 2020; 15:e0240062. [PMID: 33031471 PMCID: PMC7544035 DOI: 10.1371/journal.pone.0240062] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Accepted: 09/17/2020] [Indexed: 12/04/2022] Open
Abstract
The eukaryotic blood parasite genus Trypanosoma includes several important pathogens of humans and livestock, but has been understudied in wildlife broadly. The trypanosomes that infect birds are in particular need of increased attention, as these parasites are abundant and globally distributed, yet few studies have addressed their evolutionary origins and diversity using modern molecular and analytical approaches. Of specific interest are the deep evolutionary relationships of the avian trypanosomes relative to the trypanosome species that are pathogenic in humans, as well as their species level diversity in regions where they have been understudied such as North America. Here, we address these unresolved areas of study using phylogenomic data for two species of avian trypanosomes that were isolated as “bycatch” from host transcriptome assemblies, as well as a large 18S DNA barcode sequence dataset that includes 143 novel avian Trypanosoma 18S sequences from North America. Using a phylogenomic approach, we find that the avian trypanosomes are nested within a clade of primarily mammalian trypanosomes that includes the human pathogen Trypanosoma cruzi, and are paraphyletic with respect to the ruminant trypanosome Trypanosoma theileri. DNA barcode sequences showed that T. avium and an unidentified small, non-striated trypanosome that was morphologically similar to T. everetti are each represented by highly abundant and divergent 18S haplotypes in North America. Community-level sampling revealed that additional species-level Trypanosoma lineages exist in this region. We compared the newly sequenced DNA barcodes from North America to a global database, and found that avian Trypanosoma 18S haplotypes generally exhibited a marked lack of host specificity with at least one T. avium haplotype having an intercontinental distribution. This highly abundant T. avium haplotype appears to have a remarkably high dispersal ability and cosmopolitan capacity to evade avian host immune defenses, which warrant further study.
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MESH Headings
- Animals
- Bayes Theorem
- Biological Evolution
- Birds/genetics
- Birds/parasitology
- Contig Mapping
- DNA Barcoding, Taxonomic
- DNA, Protozoan/chemistry
- DNA, Protozoan/metabolism
- Databases, Factual
- Haplotypes
- Humans
- North America
- Phylogeny
- RNA, Ribosomal, 18S/chemistry
- RNA, Ribosomal, 18S/classification
- RNA, Ribosomal, 18S/metabolism
- Transcriptome
- Trypanosoma/classification
- Trypanosoma/genetics
- Trypanosoma/pathogenicity
- Trypanosoma cruzi/classification
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Affiliation(s)
- Spencer C. Galen
- Department of Ornithology, Academy of Natural Sciences of Drexel University, Philadelphia, PA, United States of America
- Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, NY, United States of America
- Biology Department, University of Scranton, Scranton, PA, United States of America
- * E-mail:
| | - Janus Borner
- Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, NY, United States of America
- Institute of Evolutionary Ecology and Conservation Genomics, University of Ulm, Ulm, Germany
| | - Susan L. Perkins
- Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, NY, United States of America
- Division of Science, The City College of New York, New York, NY, United States of America
| | - Jason D. Weckstein
- Department of Ornithology, Academy of Natural Sciences of Drexel University, Philadelphia, PA, United States of America
- Department of Biodiversity, Earth, and Environmental Science, Drexel University, Philadelphia, PA, United States of America
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25
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Oliveira L, Dias RJP, Rossi MF, D'Agosto M, Santos HA. Molecular diversity and coalescent species delimitation of avian haemosporidian parasites in an endemic bird species of South America. Parasitol Res 2020; 119:4033-4047. [PMID: 33030600 DOI: 10.1007/s00436-020-06908-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2020] [Accepted: 09/27/2020] [Indexed: 12/18/2022]
Abstract
Haemoproteus spp. and Plasmodium spp. are blood parasites that occur in birds worldwide. Identifying the species within this group is complex, especially in wild birds that present low parasitemia when captured, making morphological identification very difficult. Thus, the use of alternative tools to identify species may be useful in the elucidation of the distribution of parasites that circulate in bird populations. The objectives of this study were to determine the prevalence and parasitemia of the genera Plasmodium and Haemoproteus in Tachyphonus coronatus in the Atlantic Forest, Brazil, and to evaluate the molecular diversity, geographic distribution, and specificity of these parasites based on coalescent species delimitation methods. Microscopic analysis, PCR, cyt b gene sequencing, phylogenetic analysis and coalescent species delimitation using single-locus algorithms were performed (Poisson tree process (PTP) and multi-rate Poisson tree process (MPTP) methods). The analyses were performed in 117 avian host individuals. The prevalence was 55.5% for Plasmodium and 1.7% for Haemoproteus, with a mean parasitemia of 0.06%. Twenty-five Plasmodium and two Haemoproteus lineages were recovered. The MPTP method recovered seven different evolutionarily significant units (ESUs) of Plasmodium and one of Haemoproteus, whereas PTP presented fourteen ESUs of Plasmodium and one of Haemoproteus. The MPTP was more consistent with current taxonomy, while PTP overestimated the number of lineages. These ESUs are widely distributed and have already been found in 22 orders of birds that, all together, inhabit every continent, except Antarctica. The computational methods of species delimitation proved to be effective in cases where the classification of Haemosporida based just on morphology is insufficient.
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Affiliation(s)
- Luísa Oliveira
- Department of Animal Parasitology, Veterinary Institute, Federal Rural University of Rio de Janeiro, Seropédica, RJ, Brazil
| | - Roberto Júnio Pedroso Dias
- Department of Zoology (LabProto), Biological Sciences Institute, Federal University of Juiz de Fora, Juiz de Fora, MG, Brazil.,Laboratory of Protozoology (LabProto), Biological Sciences Institute, Federal University of Juiz de Fora, Juiz de Fora, MG, Brazil
| | - Mariana F Rossi
- Department of Zoology (LabProto), Biological Sciences Institute, Federal University of Juiz de Fora, Juiz de Fora, MG, Brazil. .,Laboratory of Protozoology (LabProto), Biological Sciences Institute, Federal University of Juiz de Fora, Juiz de Fora, MG, Brazil.
| | - Marta D'Agosto
- Department of Zoology (LabProto), Biological Sciences Institute, Federal University of Juiz de Fora, Juiz de Fora, MG, Brazil
| | - Huarrisson A Santos
- Department of Epidemiology and Public Health, Veterinary Institute, Federal Rural University of Rio de Janeiro, Seropédica, RJ, Brazil
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26
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Lopes VL, Costa FV, Rodrigues RA, Braga ÉM, Pichorim M, Moreira PA. High fidelity defines the temporal consistency of host-parasite interactions in a tropical coastal ecosystem. Sci Rep 2020; 10:16839. [PMID: 33033317 PMCID: PMC7545182 DOI: 10.1038/s41598-020-73563-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2020] [Accepted: 09/17/2020] [Indexed: 11/30/2022] Open
Abstract
Host-parasite interactions represent a selective force that may reduce hosts’ lifespan, their reproductive success and survival. Environmental conditions can affect host-parasite communities, leading to distinct patterns of interactions with divergent ecological and evolutionary consequences for their persistence. Here, we tested whether climatic oscillation shapes the temporal dynamics of bird-haemosporidian associations, assessing the main mechanisms involved in the temporal dissimilarity of their interactions’ networks. For two years, we monthly sampled birds in a tropical coastal ecosystem to avian malaria molecular diagnosis. The studied networks exhibited high specialization, medium modularity, with low niche overlap among parasites lineages. Moreover, alpha and β-diversity of hosts, parasites and their interactions, as well as the structure of their networks were temporally consistent, i.e., stable under fluctuations in temperature or precipitation over seasons. The structure and temporal consistency of the studied antagonistic networks suggest a high fidelity between partners, which is likely relevant for their evolutionary persistence.
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Affiliation(s)
- V L Lopes
- Programa de Pós-Graduação em Ecologia de Biomas Tropicais, Universidade Federal de Ouro Preto - UFOP, Ouro Preto, Minas Gerais, Brazil.,Departamento de Biodiversidade, Evolução e Meio Ambiente, Universidade Federal de Ouro Preto - UFOP, Campus Morro do Cruzeiro, Ouro Preto, Minas Gerais, 35400-000, Brazil
| | - F V Costa
- Programa de Pós-Graduação em Ecologia de Biomas Tropicais, Universidade Federal de Ouro Preto - UFOP, Ouro Preto, Minas Gerais, Brazil
| | - R A Rodrigues
- Departamento de Parasitologia, Universidade Federal de Minas Gerais - UFMG, Belo Horizonte, Minas Gerais, Brazil
| | - É M Braga
- Departamento de Parasitologia, Universidade Federal de Minas Gerais - UFMG, Belo Horizonte, Minas Gerais, Brazil
| | - M Pichorim
- Laboratório de Ornitologia, Departamento de Botânica e Zoologia, Universidade Federal do Rio Grande do Norte - UFRN, Natal, Rio Grande do Norte, Brazil
| | - P A Moreira
- Programa de Pós-Graduação em Ecologia de Biomas Tropicais, Universidade Federal de Ouro Preto - UFOP, Ouro Preto, Minas Gerais, Brazil. .,Departamento de Biodiversidade, Evolução e Meio Ambiente, Universidade Federal de Ouro Preto - UFOP, Campus Morro do Cruzeiro, Ouro Preto, Minas Gerais, 35400-000, Brazil.
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27
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Carrera-Játiva PD, Morgan ER, Barrows M, Jiménez-Uzcátegui G, Tituaña JRA. Free-ranging avifauna as a source of generalist parasites for captive birds in zoological settings: An overview of parasite records and potential for cross-transmission. J Adv Vet Anim Res 2020; 7:482-500. [PMID: 33005675 PMCID: PMC7521809 DOI: 10.5455/javar.2020.g445] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2020] [Revised: 06/11/2020] [Accepted: 07/11/2020] [Indexed: 01/14/2023] Open
Abstract
Captive birds in zoological settings often harbor parasites, but little information is available about the potential for free-ranging avifauna to act as a source of infection. This review summarizes the gastrointestinal parasites found in zoo birds globally and in seven common free-ranging avian species [mallard (Anas platyrhynchos), Eurasian blackbird (Turdus merula), common starling (Sturnus vulgaris), Eurasian jackdaw (Corvus monedula), house sparrow (Passer domesticus), European robin (Erithacus rubecula), and rock dove (Columba livia)] to identify the overlap and discuss the potential for cross-species transmission. Over 70 references were assessed, and papers spanned over 90 years from 1925 to 2019. A total of 60 studies from 1987 to 2019 met the eligibility criteria. All examined free-ranging avifauna harbored parasite species that were also reported in zoo birds, except for the European jackdaw. Parasites reported in captive and free-ranging birds include nematodes (Capillaria caudinflata, Dispharynx nasuta, Ornithostrongylus quadriradiatus, Strongyloides avium, Syngamus trachea, and Tetrameres fissispina), cestodes (Dicranotaenia coronula, Diorchis stefanskii, Fimbriaria fasciolaris, and Raillietina cesticillus, Sobolevicanthus gracilis), trematode (Echinostoma revolutum), and protozoa (Cryptosporidium baileyi). Although no study effectively proved cross-transmission either experimentally or by genetic analysis, these parasites demonstrate low host specificity and a high potential for parasite sharing. There is potential for parasite sharing whenever determinants such as host specificity, life cycle, and husbandry are favorable. More research should be carried out to describe parasites in both captive and free-ranging birds in zoological settings and the likelihood of cross-infection. Such information would contribute to evidence-based control measures, enhancing effective husbandry and preventive medicine protocols.
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Affiliation(s)
| | - Eric R Morgan
- School of Biological Sciences, Queen's University Belfast, Belfast, United Kingdom
| | - Michelle Barrows
- Department of Veterinary Services and Conservation Medicine, Bristol Zoo Gardens, Bristol, United Kingdom
| | | | - Jorky Roosevelt Armijos Tituaña
- Carrera de Medicina Veterinaria, Universidad Nacional de Loja, Loja, Ecuador
- Facultad Agropecuaria y de Recursos Naturales Renovables, Universidad Nacional de Loja, Loja, Ecuador
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28
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Clark NJ, Drovetski SV, Voelker G. Robust geographical determinants of infection prevalence and a contrasting latitudinal diversity gradient for haemosporidian parasites in Western Palearctic birds. Mol Ecol 2020; 29:3131-3143. [PMID: 32652721 DOI: 10.1111/mec.15545] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Revised: 06/01/2020] [Accepted: 07/06/2020] [Indexed: 12/16/2022]
Abstract
Identifying robust environmental predictors of infection probability is central to forecasting and mitigating the ongoing impacts of climate change on vector-borne disease threats. We applied phylogenetic hierarchical models to a data set of 2,171 Western Palearctic individual birds from 47 species to determine how climate and landscape variation influence infection probability for three genera of haemosporidian blood parasites (Haemoproteus, Leucocytozoon, and Plasmodium). Our comparative models found compelling evidence that birds in areas with higher vegetation density (captured by the normalized difference vegetation index [NDVI]) had higher likelihoods of carrying parasite infection. Magnitudes of this relationship were remarkably similar across parasite genera considering that these parasites use different arthropod vectors and are widely presumed to be epidemiologically distinct. However, we also uncovered key differences among genera that highlighted complexities in their climate responses. In particular, prevalences of Haemoproteus and Plasmodium showed strong but contrasting relationships with winter temperatures, supporting mounting evidence that winter warming is a key environmental filter impacting the dynamics of host-parasite interactions. Parasite phylogenetic community diversities demonstrated a clear but contrasting latitudinal gradient, with Haemoproteus diversity increasing towards the equator and Leucocytozoon diversity increasing towards the poles. Haemoproteus diversity also increased in regions with higher vegetation density, supporting our evidence that summer vegetation density is important for structuring the distributions of these parasites. Ongoing variation in winter temperatures and vegetation characteristics will probably have far-reaching consequences for the transmission and spread of vector-borne diseases.
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Affiliation(s)
- Nicholas J Clark
- UQ Spatial Epidemiology Laboratory, School of Veterinary Science, The University of Queensland, Gatton, Queensland, Australia
| | - Sergei V Drovetski
- US Geological Survey, Patuxent Wildlife Research Center, Beltsville, MD, USA
| | - Gary Voelker
- Department of Ecology and Conservation Biology, Texas A&M University, College Station, TX, USA
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29
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Shaw LP, Wang AD, Dylus D, Meier M, Pogacnik G, Dessimoz C, Balloux F. The phylogenetic range of bacterial and viral pathogens of vertebrates. Mol Ecol 2020; 29:3361-3379. [PMID: 32390272 DOI: 10.1111/mec.15463] [Citation(s) in RCA: 49] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2019] [Revised: 03/20/2020] [Accepted: 05/04/2020] [Indexed: 12/14/2022]
Abstract
Many major human pathogens are multihost pathogens, able to infect other vertebrate species. Describing the general patterns of host-pathogen associations across pathogen taxa is therefore important to understand risk factors for human disease emergence. However, there is a lack of comprehensive curated databases for this purpose, with most previous efforts focusing on viruses. Here, we report the largest manually compiled host-pathogen association database, covering 2,595 bacteria and viruses infecting 2,656 vertebrate hosts. We also build a tree for host species using nine mitochondrial genes, giving a quantitative measure of the phylogenetic similarity of hosts. We find that the majority of bacteria and viruses are specialists infecting only a single host species, with bacteria having a significantly higher proportion of specialists compared to viruses. Conversely, multihost viruses have a more restricted host range than multihost bacteria. We perform multiple analyses of factors associated with pathogen richness per host species and the pathogen traits associated with greater host range and zoonotic potential. We show that factors previously identified as important for zoonotic potential in viruses-such as phylogenetic range, research effort, and being vector-borne-are also predictive in bacteria. We find that the fraction of pathogens shared between two hosts decreases with the phylogenetic distance between them. Our results suggest that host phylogenetic similarity is the primary factor for host-switching in pathogens.
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Affiliation(s)
- Liam P Shaw
- UCL Genetics Institute, University College London, London, UK.,Nuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Oxford, UK
| | - Alethea D Wang
- UCL Genetics Institute, University College London, London, UK.,Canadian University Dubai, Dubai, United Arab Emirates
| | - David Dylus
- Department of Computational Biology, University of Lausanne, Lausanne, Switzerland.,Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland.,Swiss Institute of Bioinformatics, Lausanne, Switzerland
| | - Magda Meier
- UCL Genetics Institute, University College London, London, UK.,Genetics and Genomic Medicine, University College London Institute of Child Health, London, UK
| | - Grega Pogacnik
- UCL Genetics Institute, University College London, London, UK
| | - Christophe Dessimoz
- Department of Computational Biology, University of Lausanne, Lausanne, Switzerland.,Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland.,Swiss Institute of Bioinformatics, Lausanne, Switzerland.,Department of Genetics Evolution and Environment, Centre for Life's Origins and Evolution, University College London, London, UK.,Department of Computer Science, University College London, London, UK
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30
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Schmidt R, Auge H, Deising HB, Hensen I, Mangan SA, Schädler M, Stein C, Knight TM. Abundance, origin, and phylogeny of plants do not predict community-level patterns of pathogen diversity and infection. Ecol Evol 2020; 10:5506-5516. [PMID: 32607170 PMCID: PMC7319236 DOI: 10.1002/ece3.6292] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Revised: 03/11/2020] [Accepted: 03/23/2020] [Indexed: 11/17/2022] Open
Abstract
Pathogens have the potential to shape plant community structure, and thus, it is important to understand the factors that determine pathogen diversity and infection in communities. The abundance, origin, and evolutionary relationships of plant hosts are all known to influence pathogen patterns and are typically studied separately. We present an observational study that examined the influence of all three factors and their interactions on the diversity of and infection of several broad taxonomic groups of foliar, floral, and stem pathogens across three sites in a temperate grassland in the central United States. Despite that pathogens are known to respond positively to increases in their host abundances in other systems, we found no relationship between host abundance and either pathogen diversity or infection. Native and exotic plants did not differ in their infection levels, but exotic plants hosted a more generalist pathogen community compared to native plants. There was no phylogenetic signal across plants in pathogen diversity or infection. The lack of evidence for a role of abundance, origin, and evolutionary relationships in shaping patterns of pathogens in our study might be explained by the high generalization and global distributions of our focal pathogen community, as well as the high diversity of our plant host community. In general, the community-level patterns of aboveground pathogen infections have received less attention than belowground pathogens, and our results suggest that their patterns might not be explained by the same drivers.
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Affiliation(s)
- Robin Schmidt
- Department of Community EcologyHelmholtz‐Centre for Environmental Research–UFZHalle (Saale)Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
- Institute of Biology/Geobotany and Botanical GardenMartin Luther University Halle‐WittenbergHalle (Saale)Germany
| | - Harald Auge
- Department of Community EcologyHelmholtz‐Centre for Environmental Research–UFZHalle (Saale)Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
| | - Holger B. Deising
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
- Institute of Agricultural and Nutritional Sciences, Phytopathology and Plant ProtectionMartin Luther University Halle‐WittenbergHalle (Saale)Germany
| | - Isabell Hensen
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
- Institute of Biology/Geobotany and Botanical GardenMartin Luther University Halle‐WittenbergHalle (Saale)Germany
| | - Scott A. Mangan
- Tyson Research Center & Department of BiologyWashington University in St. LouisSt. LouisMissouriUSA
| | - Martin Schädler
- Department of Community EcologyHelmholtz‐Centre for Environmental Research–UFZHalle (Saale)Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
| | - Claudia Stein
- Tyson Research Center & Department of BiologyWashington University in St. LouisSt. LouisMissouriUSA
- Department of Biology and Environmental SciencesAuburn University at MontgomeryMontgomeryALUSA
| | - Tiffany M. Knight
- Department of Community EcologyHelmholtz‐Centre for Environmental Research–UFZHalle (Saale)Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
- Institute of Biology/Geobotany and Botanical GardenMartin Luther University Halle‐WittenbergHalle (Saale)Germany
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31
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Ellis VA, Huang X, Westerdahl H, Jönsson J, Hasselquist D, Neto JM, Nilsson J, Nilsson J, Hegemann A, Hellgren O, Bensch S. Explaining prevalence, diversity and host specificity in a community of avian haemosporidian parasites. OIKOS 2020. [DOI: 10.1111/oik.07280] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Vincenzo A. Ellis
- Dept of Biology, Lund Univ., Ecology Building SE‐223 62 Lund Sweden
- Dept of Entomology and Wildlife Ecology, Univ. of Delaware Newark DE 19716 USA
| | - Xi Huang
- Dept of Biology, Lund Univ., Ecology Building SE‐223 62 Lund Sweden
- College of Life Sciences, Beijing Normal Univ. Beijing PR China
| | | | - Jane Jönsson
- Dept of Biology, Lund Univ., Ecology Building SE‐223 62 Lund Sweden
| | | | - Júlio M. Neto
- Dept of Biology, Lund Univ., Ecology Building SE‐223 62 Lund Sweden
| | - Jan‐Åke Nilsson
- Dept of Biology, Lund Univ., Ecology Building SE‐223 62 Lund Sweden
| | - Johan Nilsson
- Dept of Biology, Lund Univ., Ecology Building SE‐223 62 Lund Sweden
| | - Arne Hegemann
- Dept of Biology, Lund Univ., Ecology Building SE‐223 62 Lund Sweden
| | - Olof Hellgren
- Dept of Biology, Lund Univ., Ecology Building SE‐223 62 Lund Sweden
| | - Staffan Bensch
- Dept of Biology, Lund Univ., Ecology Building SE‐223 62 Lund Sweden
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32
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Fecchio A, Bell JA, Bosholn M, Vaughan JA, Tkach VV, Lutz HL, Cueto VR, Gorosito CA, González-Acuña D, Stromlund C, Kvasager D, Comiche KJM, Kirchgatter K, Pinho JB, Berv J, Anciães M, Fontana CS, Zyskowski K, Sampaio S, Dispoto JH, Galen SC, Weckstein JD, Clark NJ. An inverse latitudinal gradient in infection probability and phylogenetic diversity for Leucocytozoon blood parasites in New World birds. J Anim Ecol 2019; 89:423-435. [PMID: 31571223 DOI: 10.1111/1365-2656.13117] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2019] [Accepted: 08/30/2019] [Indexed: 01/26/2023]
Abstract
Geographic variation in environmental conditions as well as host traits that promote parasite transmission may impact infection rates and community assembly of vector-transmitted parasites. Identifying the ecological, environmental and historical determinants of parasite distributions and diversity is therefore necessary to understand disease outbreaks under changing environments. Here, we identified the predictors and contributions of infection probability and phylogenetic diversity of Leucocytozoon (an avian blood parasite) at site and species levels across the New World. To explore spatial patterns in infection probability and lineage diversity for Leucocytozoon parasites, we surveyed 69 bird communities from Alaska to Patagonia. Using phylogenetic Bayesian hierarchical models and high-resolution satellite remote-sensing data, we determined the relative influence of climate, landscape, geography and host phylogeny on regional parasite community assembly. Infection rates and parasite diversity exhibited considerable variation across regions in the Americas. In opposition to the latitudinal gradient hypothesis, both the diversity and prevalence of Leucocytozoon parasites decreased towards the equator. Host relatedness and traits known to promote vector exposure neither predicted infection probability nor parasite diversity. Instead, the probability of a bird being infected with Leucocytozoon increased with increasing vegetation cover (NDVI) and moisture levels (NDWI), whereas the diversity of parasite lineages decreased with increasing NDVI. Infection rates and parasite diversity also tended to be higher in cooler regions and higher latitudes. Whereas temperature partially constrains Leucocytozoon diversity and infection rates, landscape features, such as vegetation cover and water body availability, play a significant role in modulating the probability of a bird being infected. This suggests that, for Leucocytozoon, the barriers to host shifting and parasite host range expansion are jointly determined by environmental filtering and landscape, but not by host phylogeny. Our results show that integrating host traits, host ancestry, bioclimatic data and microhabitat characteristics that are important for vector reproduction are imperative to understand and predict infection prevalence and diversity of vector-transmitted parasites. Unlike other vector-transmitted diseases, our results show that Leucocytozoon diversity and prevalence will likely decrease with warming temperatures.
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Affiliation(s)
- Alan Fecchio
- Programa de Pós-Graduação em Ecologia e Conservação da Biodiversidade, Universidade Federal de Mato Grosso, Cuiabá, Brazil
| | - Jeffrey A Bell
- Department of Biology, University of North Dakota, Grand Forks, ND, USA
| | - Mariane Bosholn
- Laboratório de Biologia Evolutiva e Comportamento Animal, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | | | - Vasyl V Tkach
- Department of Biology, University of North Dakota, Grand Forks, ND, USA
| | - Holly L Lutz
- Department of Surgery, University of Chicago, Chicago, IL, USA.,Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA
| | - Victor R Cueto
- Centro de Investigación Esquel de Montaña y Estepa Patagónica (CIEMEP), CONICET - Universidad Nacional de la Patagonia San Juan Bosco, Esquel, Argentina
| | - Cristian A Gorosito
- Centro de Investigación Esquel de Montaña y Estepa Patagónica (CIEMEP), CONICET - Universidad Nacional de la Patagonia San Juan Bosco, Esquel, Argentina
| | - Daniel González-Acuña
- Laboratorio de Parásitos y Enfermedades de Fauna Silvestre, Facultad de Ciencias Veterinarias, Universidad de Concepción, Chillán, Chile
| | - Chad Stromlund
- Department of Biology, University of North Dakota, Grand Forks, ND, USA
| | - Danielle Kvasager
- Department of Biology, University of North Dakota, Grand Forks, ND, USA
| | - Kiba J M Comiche
- Núcleo de Estudos em Malária, Superintendência de Controle de Endemias, Instituto de Medicina Tropical de São Paulo, Universidade de São Paulo, Sao Paulo, Brazil
| | - Karin Kirchgatter
- Núcleo de Estudos em Malária, Superintendência de Controle de Endemias, Instituto de Medicina Tropical de São Paulo, Universidade de São Paulo, Sao Paulo, Brazil
| | - João B Pinho
- Laboratório de Ecologia de Aves, Universidade Federal de Mato Grosso, Cuiabá, Brazil
| | - Jacob Berv
- Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, USA
| | - Marina Anciães
- Laboratório de Biologia Evolutiva e Comportamento Animal, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | - Carla S Fontana
- Laboratório de Ornitologia, Museu de Ciências e Tecnologia e Programa de Pós-graduação em Ecologia e Evolução da Biodiversidade, Pontifícia Universidade Católica do Rio Grande do Sul, Porto Alegre, Brazil
| | - Kristof Zyskowski
- Peabody Museum of Natural History, Yale University, New Haven, CT, USA
| | - Sidnei Sampaio
- Laboratório de Evolução e Biogeografia, Universidade Federal da Bahia, Salvador, Brazil
| | - Janice H Dispoto
- Department of Ornithology, Academy of Natural Sciences of Drexel University, Philadelphia, PA, USA
| | - Spencer C Galen
- Department of Ornithology, Academy of Natural Sciences of Drexel University, Philadelphia, PA, USA
| | - Jason D Weckstein
- Department of Ornithology, Academy of Natural Sciences of Drexel University, Philadelphia, PA, USA.,Department of Biodiversity, Earth, and Environmental Science, Drexel University, Philadelphia, PA, USA
| | - Nicholas J Clark
- School of Veterinary Science, University of Queensland, Gatton, Qld, Australia
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33
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Dallas TA, Laine AL, Ovaskainen O. Detecting parasite associations within multi-species host and parasite communities. Proc Biol Sci 2019; 286:20191109. [PMID: 31575371 PMCID: PMC6790755 DOI: 10.1098/rspb.2019.1109] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2019] [Accepted: 09/11/2019] [Indexed: 01/23/2023] Open
Abstract
Understanding the role of biotic interactions in shaping natural communities is a long-standing challenge in ecology. It is particularly pertinent to parasite communities sharing the same host communities and individuals, as the interactions among parasites-both competition and facilitation-may have far-reaching implications for parasite transmission and evolution. Aggregated parasite burdens may suggest that infected host individuals are either more prone to infection, or that infection by a parasite species facilitates another, leading to a positive parasite-parasite interaction. However, parasite species may also compete for host resources, leading to the prediction that parasite-parasite associations would be generally negative, especially when parasite species infect the same host tissue, competing for both resources and space. We examine the presence and strength of parasite associations using hierarchical joint species distribution models fitted to data on resident parasite communities sampled on over 1300 small mammal individuals across 22 species and their resident parasite communities. On average, we detected more positive associations between infecting parasite species than negative, with the most negative associations occurring when two parasite species infected the same host tissue, suggesting that parasite species associations may be quantifiable from observational data. Overall, our findings suggest that parasite community prediction at the level of the individual host is possible, and that parasite species associations may be detectable in complex multi-species communities, generating many hypotheses concerning the effect of host community changes on parasite community composition, parasite competition within infected hosts, and the drivers of parasite community assembly and structure.
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Affiliation(s)
- Tad A. Dallas
- Organismal and Evolutionary Biology Research Programme, University of Helsinki, PO Box 65, Helsinki 00014, Finland
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA
| | - Anna-Liisa Laine
- Organismal and Evolutionary Biology Research Programme, University of Helsinki, PO Box 65, Helsinki 00014, Finland
- Department of Evolutionary Biology and Environmental Studies, University of Zürich, Zürich 8057, Switzerland
| | - Otso Ovaskainen
- Organismal and Evolutionary Biology Research Programme, University of Helsinki, PO Box 65, Helsinki 00014, Finland
- Centre for Biodiversity Dynamics, Department of Biology, Norwegian University of Science and Technology, Trondheim 7491, Norway
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34
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Galen SC, Speer KA, Perkins SL. Evolutionary lability of host associations promotes phylogenetic overdispersion of co‐infecting blood parasites. J Anim Ecol 2019; 88:1936-1949. [DOI: 10.1111/1365-2656.13089] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2019] [Accepted: 07/12/2019] [Indexed: 12/21/2022]
Affiliation(s)
- Spencer C. Galen
- Sackler Institute for Comparative Genomics, American Museum of Natural History New York NY USA
- Richard Gilder Graduate School American Museum of Natural History New York NY USA
| | - Kelly A. Speer
- Sackler Institute for Comparative Genomics, American Museum of Natural History New York NY USA
- Richard Gilder Graduate School American Museum of Natural History New York NY USA
| | - Susan L. Perkins
- Sackler Institute for Comparative Genomics, American Museum of Natural History New York NY USA
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35
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Fecchio A, Bell JA, Pinheiro RB, Cueto VR, Gorosito CA, Lutz HL, Gaiotti MG, Paiva LV, França LF, Toledo‐Lima G, Tolentino M, Pinho JB, Tkach VV, Fontana CS, Grande JM, Santillán MA, Caparroz R, Roos AL, Bessa R, Nogueira W, Moura T, Nolasco EC, Comiche KJ, Kirchgatter K, Guimarães LO, Dispoto JH, Marini MÂ, Weckstein JD, Batalha‐Filho H, Collins MD. Avian host composition, local speciation and dispersal drive the regional assembly of avian malaria parasites in South American birds. Mol Ecol 2019; 28:2681-2693. [DOI: 10.1111/mec.15094] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2019] [Revised: 03/27/2019] [Accepted: 03/28/2019] [Indexed: 12/21/2022]
Affiliation(s)
- Alan Fecchio
- Laboratório de Evolução e Biogeografia Universidade Federal da Bahia Salvador Brazil
| | - Jeffrey A. Bell
- Department of Biology University of North Dakota Grand Forks North Dakota
| | - Rafael B.P. Pinheiro
- Programa de Pós‐Graduação em Ecologia Conservação e Manejo da Vida Silvestre, Universidade Federal de Minas Gerais Belo Horizonte Brazil
| | - Victor R. Cueto
- Centro de Investigación Esquel de Montaña y Estepa Patagónica (CIEMEP) CONICET – Universidad Nacional de la Patagonia San Juan Bosco Esquel, Chubut Argentina
| | - Cristian A. Gorosito
- Centro de Investigación Esquel de Montaña y Estepa Patagónica (CIEMEP) CONICET – Universidad Nacional de la Patagonia San Juan Bosco Esquel, Chubut Argentina
| | - Holly L. Lutz
- Department of Surgery University of Chicago Chicago Illinios
- Integrative Research Center, Field Museum of Natural History Chicago Illinios
| | - Milene G. Gaiotti
- Programa de Pós‐Graduação em Ecologia Universidade de Brasília Brasília Brazil
| | - Luciana V. Paiva
- Laboratório de Ecologia de Populações Animais, Departamento de Biociências Universidade Federal Rural do Semiárido Mossoró Brazil
| | - Leonardo F. França
- Laboratório de Ecologia de Populações Animais, Departamento de Biociências Universidade Federal Rural do Semiárido Mossoró Brazil
| | - Guilherme Toledo‐Lima
- Laboratório de Ornitologia, Departamento de Botânica e Zoologia, Centro de Biociências Universidade Federal do Rio Grande do Norte Natal Brazil
| | - Mariana Tolentino
- Laboratório de Evolução e Comportamento Animal, Coordenação de Biodiversidade Instituto Nacional de Pesquisas da Amazônia Manaus Brazil
| | - João B. Pinho
- Laboratório de Ecologia de Aves Universidade Federal de Mato Grosso Cuiabá Brazil
| | - Vasyl V. Tkach
- Department of Biology University of North Dakota Grand Forks North Dakota
| | - Carla S. Fontana
- Laboratório de Ornitologia, Museu de Ciências e Tecnologia e Programa de Pós‐graduação em Ecologia e Evolução da Biodiversidade PUCRS Porto Alegre Brazil
| | - Juan Manuel Grande
- Facultad de Ciencias Exactas y Naturales Universidad Nacional de La Pampa Santa Rosa Argentina
| | - Miguel A. Santillán
- División Zoología Museo de Historia Natural de la Provincia de La Pampa Santa Rosa Argentina
| | - Renato Caparroz
- Laboratório de Genética e Biodiversidade, Departamento de Genética e Morfologia Instituto de Ciências Biológicas, Universidade de Brasilia Brasília Brazil
| | - Andrei L. Roos
- Instituto Chico Mendes de Conservação da Biodiversidade Florianópolis Brazil
- Programa de Pós‐Graduação em Ecologia Universidade Federal de Santa Catarina Florianópolis Brazil
| | | | - Wagner Nogueira
- Programa de Pós‐Graduação em Manejo e Conservação de Ecossistemas Naturais e Agrários, Universidade Federal de Viçosa Florestal Brazil
| | - Thiago Moura
- Departamento de Zoologia Universidade Estadual de Feira de Santana Feira de Santana Brazil
| | - Erica C. Nolasco
- Departamento de Zoologia Universidade Estadual de Feira de Santana Feira de Santana Brazil
| | - Kiba J.M. Comiche
- Núcleo de Estudos em Malária Superintendência de Controle de Endemias, Instituto de Medicina Tropical de São Paulo, Universidade de São Paulo Brazil
| | - Karin Kirchgatter
- Núcleo de Estudos em Malária Superintendência de Controle de Endemias, Instituto de Medicina Tropical de São Paulo, Universidade de São Paulo Brazil
| | - Lilian O. Guimarães
- Núcleo de Estudos em Malária Superintendência de Controle de Endemias, Instituto de Medicina Tropical de São Paulo, Universidade de São Paulo Brazil
| | - Janice H. Dispoto
- Department of Ornithology Academy of Natural Sciences of Drexel University Philadelphia Pennsylvania
| | - Miguel Â. Marini
- Departamento de Zoologia Universidade de Brasília Brasília Brazil
| | - Jason D. Weckstein
- Department of Ornithology Academy of Natural Sciences of Drexel University Philadelphia Pennsylvania
- Department of Biodiversity, Earth, and Environmental Science Drexel University Philadelphia Pennsylvania
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36
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Ecology, not distance, explains community composition in parasites of sky-island Audubon’s Warblers. Int J Parasitol 2019; 49:437-448. [DOI: 10.1016/j.ijpara.2018.11.012] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2018] [Revised: 11/13/2018] [Accepted: 11/19/2018] [Indexed: 12/31/2022]
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37
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Host Specificity in Variable Environments. Trends Parasitol 2019; 35:452-465. [PMID: 31047808 DOI: 10.1016/j.pt.2019.04.001] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2019] [Revised: 04/02/2019] [Accepted: 04/02/2019] [Indexed: 12/15/2022]
Abstract
Host specificity encompasses the range and diversity of host species that a parasite is capable of infecting and is considered a crucial measure of a parasite's potential to shift hosts and trigger disease emergence. Yet empirical studies rarely consider that regional observations only reflect a parasite's 'realized' host range under particular conditions: the true 'fundamental' range of host specificity is typically not approached. We provide an overview of challenges and directions in modelling host specificity under variable environmental conditions. Combining tractable modelling frameworks with multiple data sources that account for the strong interplay between a parasite's evolutionary history, transmission mode, and environmental filters that shape host-parasite interactions will improve efforts to quantify emerging disease risk in times of global change.
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38
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Engelstädter J, Fortuna NZ. The dynamics of preferential host switching: Host phylogeny as a key predictor of parasite distribution. Evolution 2019; 73:1330-1340. [PMID: 30847894 DOI: 10.1111/evo.13716] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2019] [Accepted: 02/06/2019] [Indexed: 12/17/2022]
Abstract
Parasites often jump to and become established in a new host species. There is much evidence that the probability of such host shifts decreases with increasing phylogenetic distance between donor and recipient hosts, but the consequences of such preferential host switching remain little explored. We develop a computational model to investigate the dynamics of parasite host shifts in the presence of this phylogenetic distance effect. In this model, a clade of parasites evolves on an evolving clade of host species where parasites can cospeciate with their hosts, switch to new hosts, speciate within hosts or become extinct. Our model predicts that host phylogenies are major determinants of parasite distributions across trees. In particular, we predict that trees consisting of few large clades of host species and those with fast species turnover should harbor more parasites than trees with many small clades and those that diversify more slowly. Within trees, large clades are predicted to exhibit a higher fraction of infected species than small clades. We discuss our results in the light of recent cophylogenetic studies in a wide range of host-parasite systems.
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Affiliation(s)
- Jan Engelstädter
- School of Biological Sciences, The University of Queensland, Brisbane, Australia
| | - Nicole Z Fortuna
- School of Biological Sciences, The University of Queensland, Brisbane, Australia
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39
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Garcia-Longoria L, Marzal A, de Lope F, Garamszegi L. Host-parasite interaction explains variation in the prevalence of avian haemosporidians at the community level. PLoS One 2019; 14:e0205624. [PMID: 30840636 PMCID: PMC6402683 DOI: 10.1371/journal.pone.0205624] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2018] [Accepted: 02/15/2019] [Indexed: 11/25/2022] Open
Abstract
Parasites are a selective force that shape host community structure and dynamics, but host communities can also influence parasitism. Understanding the dual nature from host-parasite interactions can be facilitated by quantifying the variation in parasite prevalence among host species and then comparing that variation to other ecological factors that are known to also shape host communities. Avian haemosporidian parasites (e.g. Plasmodium and Haemoproteus) are abundant and widespread representing an excellent model for the study of host-parasite interactions. Several geographic and environmental factors have been suggested to determine prevalence of avian haemosporidians in bird communities. However, it remains unknown whether host and parasite traits, represented by phylogenetic distances among species and degree of specialization in host-parasite relationships, can influence infection status. The aims of this study were to analyze factors affecting infection status in a bird community and to test whether the degree of parasite specialization on their hosts is determined by host traits. Our statistical analyses suggest that infection status is mainly determined by the interaction between host species and parasite lineages where tolerance and/or susceptibility to parasites plays an essential role. Additionally, we found that although some of the parasite lineages infected a low number of bird individuals, the species they infected were distantly related and therefore the parasites themselves should not be considered typical host specialists. Infection status was higher for generalist than for specialist parasites in some, but not all, host species. These results suggest that detected prevalence in a species mainly results from the interaction between host immune defences and parasite exploitation strategies wherein the result of an association between particular parasite lineages and particular host species is idiosyncratic.
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Affiliation(s)
- Luz Garcia-Longoria
- Departamento de Anatomía, Biología Celular y Zoología, Universidad de Extremadura, Badajoz (Spain)
- Molecular Ecology and Evolution Lab, Department of Biology, Lund University, Sölvegatan 37, Lund, Sweden
- * E-mail:
| | - Alfonso Marzal
- Departamento de Anatomía, Biología Celular y Zoología, Universidad de Extremadura, Badajoz (Spain)
| | - Florentino de Lope
- Departamento de Anatomía, Biología Celular y Zoología, Universidad de Extremadura, Badajoz (Spain)
| | - Laszlo Garamszegi
- Department of Evolutionary Ecology, Estación Biológica de Doñana-CSIC, Seville, Spain
- MTA-ELTE, Theoretical Biology and Evolutionary Ecology Research Group, Department of Plant Systematics, Ecology and Theoretical Biology, Eötvös Loránd University, Budapest, Hungary
- Behavioural Ecology Group, Department of Systematic Zoology and Ecology, Eötvös Loránd University, Budapest, Hungary
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40
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Fecchio A, Wells K, Bell JA, Tkach VV, Lutz HL, Weckstein JD, Clegg SM, Clark NJ. Climate variation influences host specificity in avian malaria parasites. Ecol Lett 2019; 22:547-557. [PMID: 30637890 DOI: 10.1111/ele.13215] [Citation(s) in RCA: 65] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Revised: 11/13/2018] [Accepted: 11/28/2018] [Indexed: 12/16/2022]
Abstract
Parasites with low host specificity (e.g. infecting a large diversity of host species) are of special interest in disease ecology, as they are likely more capable of circumventing ecological or evolutionary barriers to infect new hosts than are specialist parasites. Yet for many parasites, host specificity is not fixed and can vary in response to environmental conditions. Using data on host associations for avian malaria parasites (Apicomplexa: Haemosporida), we develop a hierarchical model that quantifies this environmental dependency by partitioning host specificity variation into region- and parasite-level effects. Parasites were generally phylogenetic host specialists, infecting phylogenetically clustered subsets of available avian hosts. However, the magnitude of this specialisation varied biogeographically, with parasites exhibiting higher host specificity in regions with more pronounced rainfall seasonality and wetter dry seasons. Recognising the environmental dependency of parasite specialisation can provide useful leverage for improving predictions of infection risk in response to global climate change.
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Affiliation(s)
- Alan Fecchio
- Laboratório de Evolução e Biogeografia, Universidade Federal da Bahia, Rua Barão de Jeremoabo 147, Salvador, BA, 40170115, Brazil
| | - Konstans Wells
- Department of Biosciences, Swansea University, Swansea, SA2 8PP, UK
| | - Jeffrey A Bell
- Department of Biology, University of North Dakota, 1 Campus Drive and Cornell Street, Grand Forks, ND, 58202, USA
| | - Vasyl V Tkach
- Department of Biology, University of North Dakota, 10 Cornell Street, Grand Forks, ND, 58202, USA
| | - Holly L Lutz
- Department of Surgery, University of Chicago, 5812 S. Ellis Ave., Chicago, IL, 606372, USA.,Integrative Research Center, Field Museum of Natural History, 1400 S. Lake Shore Drive, Chicago, IL, 60605, USA
| | - Jason D Weckstein
- Department of Ornithology, Academy of Natural Sciences and Department of Biodiversity, Earth, and Environmental Sciences, Drexel University, 1900 Benjamin Franklin Parkway, Philadelphia, PA, 19103, USA
| | - Sonya M Clegg
- Edward Grey Institute of Field Ornithology, Department of Zoology, University of Oxford, Oxford, OX1 3PS, UK
| | - Nicholas J Clark
- School of Veterinary Science, University of Queensland, Gatton, Qld, Australia
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41
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Videvall E. Genomic Advances in Avian Malaria Research. Trends Parasitol 2019; 35:254-266. [PMID: 30642725 DOI: 10.1016/j.pt.2018.12.005] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2018] [Revised: 12/24/2018] [Accepted: 12/25/2018] [Indexed: 12/14/2022]
Abstract
Haemosporidian parasites causing malaria-like diseases in birds are globally distributed and have been associated with reduced host fitness and mortality in susceptible bird species. This group of parasites has not only enabled a greater understanding of host specificity, virulence, and parasite dispersal, but has also been crucial in restructuring the evolutionary history of apicomplexans. Despite their importance, genomic resources of avian haemosporidians have proved difficult to obtain, and they have, as a result, been lagging behind the congeneric Plasmodium species infecting mammals. In this review, I discuss recent genomic advances in the field of avian malaria research, and outline outstanding questions that will become possible to investigate with the continued successful efforts to generate avian haemosporidian genomic data.
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Affiliation(s)
- Elin Videvall
- Center for Conservation Genomics, Smithsonian Conservation Biology Institute, Washington, DC, USA.
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42
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43
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Huang X, Ellis VA, Jönsson J, Bensch S. Generalist haemosporidian parasites are better adapted to a subset of host species in a multiple host community. Mol Ecol 2018; 27:4336-4346. [DOI: 10.1111/mec.14856] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2018] [Revised: 08/15/2018] [Accepted: 08/27/2018] [Indexed: 12/14/2022]
Affiliation(s)
- Xi Huang
- Molecular Ecology and Evolution Lab; Department of Biology; Lund University; Lund Sweden
| | - Vincenzo A. Ellis
- Molecular Ecology and Evolution Lab; Department of Biology; Lund University; Lund Sweden
| | - Jane Jönsson
- Molecular Ecology and Evolution Lab; Department of Biology; Lund University; Lund Sweden
| | - Staffan Bensch
- Molecular Ecology and Evolution Lab; Department of Biology; Lund University; Lund Sweden
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44
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Role of ecology and phylogeny in determining tapeworm assemblages in skates (Rajiformes). J Helminthol 2018; 93:738-751. [PMID: 30205854 DOI: 10.1017/s0022149x18000809] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
An understanding of the mechanisms that determine host and parasite relationships is a central aim in parasitology. Association of a parasite species with a host species may be influenced primarily by phylogenetic constraints that cause parasite species to co-speciate with their host species, or predominantly by ecological parameters that influence all other co-evolutionary scenarios. This study aimed to investigate the role of co-speciation as well as other co-evolutionary scenarios in influencing the assemblages of tapeworm parasites (marine cestodes) in skate hosts (Rajiformes) using a modification of the PACo (Procrustean Approach to Cophylogeny) method. The study found that phylogeny and host ecology are both significant predictors of skate-tapeworm relationships, implying that co-speciation as well as other co-evolutionary scenarios are shaping these associations. The study also investigated the key ecological parameters influencing host-switching and found that host diet, distribution depth, average body size and geographical location have a combined effect. Given the importance of parasites in ensuring healthy and stable marine ecosystems, the findings of this study have implications for conservation management worldwide.
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45
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Galen SC, Nunes R, Sweet PR, Perkins SL. Integrating coalescent species delimitation with analysis of host specificity reveals extensive cryptic diversity despite minimal mitochondrial divergence in the malaria parasite genus Leucocytozoon. BMC Evol Biol 2018; 18:128. [PMID: 30165810 PMCID: PMC6117968 DOI: 10.1186/s12862-018-1242-x] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2018] [Accepted: 08/15/2018] [Indexed: 01/27/2023] Open
Abstract
BACKGROUND Coalescent methods that use multi-locus sequence data are powerful tools for identifying putatively reproductively isolated lineages, though this approach has rarely been used for the study of microbial groups that are likely to harbor many unrecognized species. Among microbial symbionts, integrating genetic species delimitation methods with trait data that could indicate reproductive isolation, such as host specificity data, has rarely been used despite its potential to inform species limits. Here we test the ability of an integrative approach combining genetic and host specificity data to delimit species within the avian malaria parasite genus Leucocytozoon in central Alaska. RESULTS We sequenced seven nuclear loci for 69 Leucocytozoon samples and used multiple species delimitation methods (GMYC and BPP models), tested for differences in host infection patterns among putative species based on 406 individual infections, and characterized parasite morphology. We found that cryptic morphology has masked a highly diverse Leucocytozoon assemblage, with most species delimitation methods recovering support for at least 21 separate species that occur sympatrically and have divergent host infection patterns. Reproductive isolation among putative species appears to have evolved despite low mtDNA divergence, and in one instance two Leucocytozoon cytb haplotypes that differed by a single base pair (~ 0.2% divergence) were supported as separate species. However, there was no consistent association between mtDNA divergence and species limits. Among cytb haplotypes that differed by one to three base pairs we observed idiosyncratic patterns of nuclear and ecological divergence, with cytb haplotype pairs found to be either conspecific, reproductively isolated with no divergence in host specificity, or reproductively isolated with divergent patterns of host specialization. CONCLUSION Integrating multi-locus genetic species delimitation methods and non-traditional ecological data types such as host specificity provide a novel view of the diversity of avian malaria parasites that has been missed previously using morphology and mtDNA barcodes. Species delimitation methods show that Leucocytozoon is highly species-rich in Alaska, and the genus is likely to harbor extraordinary species-level diversity worldwide. Integrating genetic and ecological data will be an important approach for understanding the diversity and evolutionary history of microbial symbionts moving forward.
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Affiliation(s)
- Spencer C. Galen
- Sackler Institute for Comparative Genomics, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024 USA
- Richard Gilder Graduate School, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024 USA
| | - Renato Nunes
- Sackler Institute for Comparative Genomics, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024 USA
| | - Paul R. Sweet
- Department of Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024 USA
| | - Susan L. Perkins
- Sackler Institute for Comparative Genomics, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024 USA
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46
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Ellis VA, Bensch S. Host specificity of avian haemosporidian parasites is unrelated among sister lineages but shows phylogenetic signal across larger clades. Int J Parasitol 2018; 48:897-902. [PMID: 30076910 DOI: 10.1016/j.ijpara.2018.05.005] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2018] [Revised: 04/16/2018] [Accepted: 05/08/2018] [Indexed: 12/23/2022]
Abstract
Parasites can vary in the number of host species they infect, a trait known as "host specificity". Here we quantify phylogenetic signal-the tendency for closely related species to resemble each other more than distantly related species-in host specificity of avian haemosporidian parasites (genera Plasmodium, Haemoproteus and Leucocytozoon) using data from MalAvi, the global avian haemosporidian database. We used the genetic data (479 base pairs of cytochrome b) that define parasite lineages to produce genus level phylogenies. Combining host specificity data with those phylogenies revealed significant levels of phylogenetic signal while controlling for sampling effects; phylogenetic signal was higher when the phylogenetic diversity of hosts was taken into account. We then tested for correlations in the host specificity of pairs of sister lineages. Correlations were generally close to zero for all three parasite genera. These results suggest that while the host specificity of parasite sister lineages differ, larger clades may be relatively specialised or generalised.
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Affiliation(s)
- Vincenzo A Ellis
- Molecular Ecology and Evolution Lab, Department of Biology, Lund University, Lund, Sweden.
| | - Staffan Bensch
- Molecular Ecology and Evolution Lab, Department of Biology, Lund University, Lund, Sweden
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47
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Host community heterogeneity and the expression of host specificity in avian haemosporidia in the Western Cape, South Africa. Parasitology 2018; 145:1876-1883. [PMID: 29764529 DOI: 10.1017/s0031182018000665] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Similar patterns of parasite prevalence in animal communities may be driven by a range of different mechanisms. The influences of host heterogeneity and host-parasite interactions in host community assemblages are poorly understood. We sampled birds at 27 wetlands in South Africa to compare four hypotheses explaining how host community heterogeneity influences host specificity in avian haemosporidia communities: the host-neutral hypothesis, the super-spreader hypothesis, the host specialist hypothesis and the heterogeneity hypothesis. A total of 289 birds (29%) were infected with Plasmodium, Haemoproteus and/or Leucocytozoon lineages. Leucocytozoon was the most diverse and generalist parasite genus, and Plasmodium the most conservative. The host-neutral and host specialist hypotheses received the most support in explaining prevalence by lineage (Leucocytozoon) and genus (Plasmodium and Haemoproteus), respectively. We observed that haemosporidian prevalence was potentially amplified or reduced with variation in host and/or parasitic taxonomic levels of analysis. Our results show that Leucocytozoon host abundance and diversity was influential to parasite prevalence at varying taxonomic levels, particularly within heterogeneous host communities. Furthermore, we note that prevalent mechanisms of infection can potentially act as distinct roots for shaping communities of avian haemosporidia.
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McLeish MJ, Fraile A, García-Arenal F. Ecological Complexity in Plant Virus Host Range Evolution. Adv Virus Res 2018; 101:293-339. [PMID: 29908592 DOI: 10.1016/bs.aivir.2018.02.009] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The host range of a plant virus is the number of species in which it can reproduce. Most studies of plant virus host range evolution have focused on the genetics of host-pathogen interactions. However, the distribution and abundance of plant viruses and their hosts do not always overlap, and these spatial and temporal discontinuities in plant virus-host interactions can result in various ecological processes that shape host range evolution. Recent work shows that the distributions of pathogenic and resistant genotypes, vectors, and other resources supporting transmission vary widely in the environment, producing both expected and unanticipated patterns. The distributions of all of these factors are influenced further by competitive effects, natural enemies, anthropogenic disturbance, the abiotic environment, and herbivory to mention some. We suggest the need for further development of approaches that (i) explicitly consider resource use and the abiotic and biotic factors that affect the strategies by which viruses exploit resources; and (ii) are sensitive across scales. Host range and habitat specificity will largely determine which phyla are most likely to be new hosts, but predicting which host and when it is likely to be infected is enormously challenging because it is unclear how environmental heterogeneity affects the interactions of viruses and hosts.
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Affiliation(s)
- Michael J McLeish
- Centro de Biotecnología y Genómica de Plantas UPM-INIA, and E.T.S.I. Agrícola, Alimentaria y de Biosistemas, Campus de Montegancedo, Universidad Politécnica de Madrid, Madrid, Spain
| | - Aurora Fraile
- Centro de Biotecnología y Genómica de Plantas UPM-INIA, and E.T.S.I. Agrícola, Alimentaria y de Biosistemas, Campus de Montegancedo, Universidad Politécnica de Madrid, Madrid, Spain
| | - Fernando García-Arenal
- Centro de Biotecnología y Genómica de Plantas UPM-INIA, and E.T.S.I. Agrícola, Alimentaria y de Biosistemas, Campus de Montegancedo, Universidad Politécnica de Madrid, Madrid, Spain.
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Erlandson S, Wei X, Savage J, Cavender-Bares J, Peay K. Soil abiotic variables are more important than Salicaceae phylogeny or habitat specialization in determining soil microbial community structure. Mol Ecol 2018; 27:2007-2024. [PMID: 29603835 DOI: 10.1111/mec.14576] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2017] [Accepted: 03/21/2018] [Indexed: 01/03/2023]
Abstract
Predicting the outcome of interspecific interactions is a central goal in ecology. The diverse soil microbes that interact with plants are shaped by different aspects of plant identity, such as phylogenetic history and functional group. Species interactions may also be strongly shaped by abiotic environment, but there is mixed evidence on the relative importance of environment, plant identity and their interactions in shaping soil microbial communities. Using a multifactor, split-plot field experiment, we tested how hydrologic context, and three facets of Salicaceae plant identity-habitat specialization, phylogenetic distance and species identity-influence soil microbial community structure. Analysis of microbial community sequencing data with generalized dissimilarity models showed that abiotic environment explained up to 25% of variation in community composition of soil bacteria, fungi and archaea, while Salicaceae identity influenced <1% of the variation in community composition of soil microbial taxa. Multivariate linear models indicated that the influence of Salicaceae identity was small, but did contribute to differentiation of soil microbes within treatments. Moreover, results from a microbial niche breadth analysis show that soil microbes in wetlands have more specialized host associations than soil microbes in drier environments-showing that abiotic environment changed how plant identity correlated with soil microbial communities. This study demonstrates the predominance of major abiotic factors in shaping soil microbial community structure; the significance of abiotic context to biotic influence on soil microbes; and the utility of field experiments to disentangling the abiotic and biotic factors that are thought to be most essential for soil microbial communities.
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Affiliation(s)
- Sonya Erlandson
- Department of Biology, Stanford University, Stanford, CA, USA
| | - Xiaojing Wei
- Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, MN, USA
| | - Jessica Savage
- Department of Biology, University of Minnesota, Duluth, MN, USA
| | | | - Kabir Peay
- Department of Biology, Stanford University, Stanford, CA, USA
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Dallas T, Huang S, Nunn C, Park AW, Drake JM. Estimating parasite host range. Proc Biol Sci 2018; 284:rspb.2017.1250. [PMID: 28855365 DOI: 10.1098/rspb.2017.1250] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2017] [Accepted: 07/20/2017] [Indexed: 01/03/2023] Open
Abstract
Estimating the number of host species that a parasite can infect (i.e. host range) provides key insights into the evolution of host specialism and is a central concept in disease ecology. Host range is rarely estimated in real systems, however, because variation in species relative abundance and the detection of rare species makes it challenging to confidently estimate host range. We applied a non-parametric richness indicator to estimate host range in simulated and empirical data, allowing us to assess the influence of sampling heterogeneity and data completeness. After validating our method on simulated data, we estimated parasite host range for a sparsely sampled global parasite occurrence database (Global Mammal Parasite Database) and a repeatedly sampled set of parasites of small mammals from New Mexico (Sevilleta Long Term Ecological Research Program). Estimation accuracy varied strongly with parasite taxonomy, number of parasite occurrence records, and the shape of host species-abundance distribution (i.e. the dominance and rareness of species in the host community). Our findings suggest that between 20% and 40% of parasite host ranges are currently unknown, highlighting a major gap in our understanding of parasite specificity, host-parasite network structure, and parasite burdens.
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Affiliation(s)
- Tad Dallas
- Odum School of Ecology, University of Georgia, Athens, GA 30602, USA .,Environmental Science and Policy, University of California, Davis, Davis, CA 95616, USA
| | - Shan Huang
- Senckenberg Biodiversity and Climate Research Centre (BiK-F), Senckenberganlage 25, 60325 Frankfurt am Main, Germany
| | - Charles Nunn
- Department of Evolutionary Anthropology, Duke University, Durham, NC 27708, USA.,Duke Global Health Institute, Durham, NC 27710, USA
| | - Andrew W Park
- Odum School of Ecology, University of Georgia, Athens, GA 30602, USA.,Center for the Ecology of Infectious Diseases, University of Georgia, Athens, GA 30602, USA
| | - John M Drake
- Odum School of Ecology, University of Georgia, Athens, GA 30602, USA.,Center for the Ecology of Infectious Diseases, University of Georgia, Athens, GA 30602, USA
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