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Maciel F, Madureira L, Geada P, Teixeira JA, Silva J, Vicente AA. The potential of Pavlovophyceae species as a source of valuable carotenoids and polyunsaturated fatty acids for human consumption. Biotechnol Adv 2024; 74:108381. [PMID: 38777244 DOI: 10.1016/j.biotechadv.2024.108381] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2023] [Revised: 05/17/2024] [Accepted: 05/17/2024] [Indexed: 05/25/2024]
Abstract
Microalgae are a group of microorganisms, mostly photoautotrophs with high CO2 fixation capacity, that have gained increased attention in the last decades due to their ability to produce a wide range of valuable metabolites, such as carotenoids and polyunsaturated fatty acids, for application in food/feed, pharmaceutical, and cosmeceutical industries. Their increasing relevance has highlighted the importance of identifying and culturing new bioactive-rich microalgae species, as well as of a thorough understanding of the growth conditions to optimize the biomass production and master the biochemical composition according to the desired application. Thus, this review intends to describe the main cell processes behind the production of carotenoids and polyunsaturated fatty acids, in order to understand the possible main triggers responsible for the accumulation of those biocompounds. Their economic value and the biological relevance for human consumption are also summarized. In addition, an extensive review of the impact of culture conditions on microalgae growth performance and their biochemical composition is presented, focusing mainly on the studies involving Pavlovophyceae species. A complementary description of the biochemical composition of these microalgae is also presented, highlighting their potential applications as a promising bioresource of compounds for large-scale production and human and animal consumption.
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Affiliation(s)
- Filipe Maciel
- CEB - Centre of Biological Engineering, University of Minho, Campus de Gualtar, Braga, Portugal; LABBELS -Associate Laboratory, Braga/Guimarães, Portugal.
| | - Leandro Madureira
- CEB - Centre of Biological Engineering, University of Minho, Campus de Gualtar, Braga, Portugal.
| | - Pedro Geada
- CEB - Centre of Biological Engineering, University of Minho, Campus de Gualtar, Braga, Portugal; LABBELS -Associate Laboratory, Braga/Guimarães, Portugal.
| | - José António Teixeira
- CEB - Centre of Biological Engineering, University of Minho, Campus de Gualtar, Braga, Portugal; LABBELS -Associate Laboratory, Braga/Guimarães, Portugal.
| | - Joana Silva
- ALLMICROALGAE, Natural Products S.A., R&D Department, Rua 25 de Abril 19, 2445-287 Pataias, Portugal.
| | - António Augusto Vicente
- CEB - Centre of Biological Engineering, University of Minho, Campus de Gualtar, Braga, Portugal; LABBELS -Associate Laboratory, Braga/Guimarães, Portugal.
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Li DW, Tan JZ, Li ZF, Ou LJ. Membrane lipid remodeling and autophagy to cope with phosphorus deficiency in the dinoflagellate Prorocentrum shikokuense. CHEMOSPHERE 2024; 349:140844. [PMID: 38042419 DOI: 10.1016/j.chemosphere.2023.140844] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 11/26/2023] [Accepted: 11/27/2023] [Indexed: 12/04/2023]
Abstract
Dinoflagellates, which are responsible for more than 80% of harmful algal blooms in coastal waters, are competitive in low-phosphate environments. However, the specific acclimated phosphorus strategies to adapt to phosphorus deficiency in dinoflagellates, particularly through intracellular phosphorus metabolism, remain largely unknown. Comprehensive physiological, biochemical, and transcriptomic analyses were conducted to investigate intracellular phosphorus modulation in a model dinoflagellate, Prorocentrum shikokuense, with a specific focus on membrane lipid remodeling and autophagy in response to phosphorus deficiency. Under phosphorus deficiency, P. shikokuense exhibited a preference to spare phospholipids with nonphospholipids. The major phospholipid classes of phosphatidylcholine and phosphatidylethanolamine decreased in content, whereas the betaine lipid class of diacylglyceryl carboxyhydroxymethylcholine increased in content. Furthermore, under phosphorus deficiency, P. shikokuense induced autophagy as a mechanism to conserve and recycle cellular phosphorus resources. The present study highlights the effective modulation of intracellular phosphorus in P. shikokuense through membrane phospholipid remodeling and autophagy and contributes to a comprehensive understanding of the acclimation strategies to low-phosphorus conditions in dinoflagellates.
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Affiliation(s)
- Da-Wei Li
- College of Life Science and Technology, and Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, Jinan University, Guangzhou, China
| | - Jin-Zhou Tan
- College of Life Science and Technology, and Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, Jinan University, Guangzhou, China
| | - Zhuo-Fan Li
- College of Life Science and Technology, and Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, Jinan University, Guangzhou, China
| | - Lin-Jian Ou
- College of Life Science and Technology, and Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, Jinan University, Guangzhou, China; Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai, China.
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3
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Huang XL, Zhuang YQ, Xiong YY, Li DW, Ou LJ. Efficient modulation of cellular phosphorus components in response to phosphorus deficiency in the dinoflagellate Karenia mikimotoi. Appl Environ Microbiol 2023; 89:e0086723. [PMID: 37850723 PMCID: PMC10686090 DOI: 10.1128/aem.00867-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Accepted: 08/29/2023] [Indexed: 10/19/2023] Open
Abstract
IMPORTANCE Dinoflagellates are the most common phytoplankton group and account for more than 75% of harmful algal blooms in coastal waters. In recent decades, dinoflagellates seem to prevail in phosphate-depleted waters. However, the underlying acclimation mechanisms and competitive strategies of dinoflagellates in response to phosphorus deficiency are poorly understood, especially in terms of intracellular phosphorus modulation and recycling. Here, we focused on the response of intracellular phosphorus metabolism to phosphorus deficiency in the model dinoflagellate Karenia mikimotoi. Our work reveals the strong capability of K. mikimotoi to efficiently regulate intracellular phosphorus resources, particularly through membrane phospholipid remodeling and miRNA regulation of energy metabolism. Our research improved the understanding of intracellular phosphorus metabolism in marine phytoplankton and underscored the advantageous strategies of dinoflagellates in the efficient modulation of internal phosphorus resources to maintain active physiological activity and growth under unsuitable phosphorus conditions, which help them outcompete other species in coastal phosphate-depleted environments.
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Affiliation(s)
- Xue-Ling Huang
- College of Life Science and Technology and Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, Jinan University, Guangzhou, China
| | - Yan-Qing Zhuang
- College of Life Science and Technology and Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, Jinan University, Guangzhou, China
| | - Yue-Yue Xiong
- College of Life Science and Technology and Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, Jinan University, Guangzhou, China
| | - Da-Wei Li
- College of Life Science and Technology and Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, Jinan University, Guangzhou, China
| | - Lin-Jian Ou
- College of Life Science and Technology and Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, Jinan University, Guangzhou, China
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai, China
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Bolik S, Schlaich A, Mukhina T, Amato A, Bastien O, Schneck E, Demé B, Jouhet J. Lipid bilayer properties potentially contributed to the evolutionary disappearance of betaine lipids in seed plants. BMC Biol 2023; 21:275. [PMID: 38017456 PMCID: PMC10685587 DOI: 10.1186/s12915-023-01775-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Accepted: 11/21/2023] [Indexed: 11/30/2023] Open
Abstract
BACKGROUND Many organisms rely on mineral nutrients taken directly from the soil or aquatic environment, and therefore, developed mechanisms to cope with the limitation of a given essential nutrient. For example, photosynthetic cells have well-defined responses to phosphate limitation, including the replacement of cellular membrane phospholipids with non-phosphorous lipids. Under phosphate starvation, phospholipids in extraplastidial membranes are replaced by betaine lipids in microalgae. In higher plants, the synthesis of betaine lipid is lost, driving plants to other strategies to cope with phosphate starvation where they replace their phospholipids by glycolipids. RESULTS The aim of this work was to evaluate to what extent betaine lipids and PC lipids share physicochemical properties and could substitute for each other. By neutron diffraction experiments and dynamic molecular simulation of two synthetic lipids, the dipalmitoylphosphatidylcholine (DPPC) and the dipalmitoyl-diacylglyceryl-N,N,N-trimethylhomoserine (DP-DGTS), we found that DP-DGTS bilayers are thicker than DPPC bilayers and therefore are more rigid. Furthermore, DP-DGTS bilayers are more repulsive, especially at long range, maybe due to unexpected unscreened electrostatic contribution. Finally, DP-DGTS bilayers could coexist in the gel and fluid phases. CONCLUSION The different properties and hydration responses of PC and DGTS provide an explanation for the diversity of betaine lipids observed in marine organisms and for their disappearance in seed plants.
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Affiliation(s)
- Stéphanie Bolik
- Laboratoire Physiologie Cellulaire Et Végétale, Univ. Grenoble Alpes, CNRS, CEA, INRAE, IRIG, Grenoble, France
- Large Scale Structures Group, Institut Laue-Langevin, 38000, Grenoble, France
| | - Alexander Schlaich
- Institute for Computational Physics, Universität Stuttgart, Stuttgart, Germany
- Stuttgart Center for Simulation Science (SimTech), Universität Stuttgart, Stuttgart, Germany
| | - Tetiana Mukhina
- Institute for Condensed Matter Physics, Darmstadt, Darmstadt, TU, Germany
| | - Alberto Amato
- Laboratoire Physiologie Cellulaire Et Végétale, Univ. Grenoble Alpes, CNRS, CEA, INRAE, IRIG, Grenoble, France
| | - Olivier Bastien
- Laboratoire Physiologie Cellulaire Et Végétale, Univ. Grenoble Alpes, CNRS, CEA, INRAE, IRIG, Grenoble, France
| | - Emanuel Schneck
- Institute for Condensed Matter Physics, Darmstadt, Darmstadt, TU, Germany
| | - Bruno Demé
- Large Scale Structures Group, Institut Laue-Langevin, 38000, Grenoble, France.
| | - Juliette Jouhet
- Laboratoire Physiologie Cellulaire Et Végétale, Univ. Grenoble Alpes, CNRS, CEA, INRAE, IRIG, Grenoble, France.
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Shimojo M, Nakamura M, Kitaura G, Ihara Y, Shimizu S, Hori K, Iwai M, Ohta H, Ishizaki K, Shimojima M. Phosphatidic acid phosphohydrolase modulates glycerolipid synthesis in Marchantia polymorpha and is crucial for growth under both nutrient-replete and -deficient conditions. PLANTA 2023; 258:92. [PMID: 37792042 PMCID: PMC10550880 DOI: 10.1007/s00425-023-04247-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Accepted: 09/18/2023] [Indexed: 10/05/2023]
Abstract
MAIN CONCLUSION The phosphatidic acid phosphohydrolase of Marchantia polymorpha modulates plastid glycolipid synthesis through the ER pathway and is essential for normal plant development regardless of nutrient availability. Membrane lipid remodeling is one of the strategies plant cells use to secure inorganic phosphate (Pi) for plant growth, but many aspects of the molecular mechanism and its regulation remain unclear. Here we analyzed membrane lipid remodeling using a non-vascular plant, Marchantia polymorpha. The lipid composition and fatty acid profile during Pi starvation in M. polymorpha revealed a decrease in phospholipids and an increase in both galactolipids and betaine lipids. In Arabidopsis thaliana, phosphatidic acid phosphohydrolase (PAH) is involved in phospholipid degradation and is crucial for tolerance to both Pi and nitrogen starvation. We produced two M. polymorpha PAH (MpPAH) knockout mutants (Mppah-1 and Mppah-2) and found that, unlike Arabidopsis mutants, Mppah impaired plant growth with shorter rhizoids compared with wild-type plants even under nutrient-replete conditions. Mutation of MpPAH did not significantly affect the mole percent of each glycerolipid among total membrane glycerolipids from whole plants under both Pi-replete and Pi-deficient conditions. However, the fatty acid composition of monogalactosyldiacylglycerol indicated that the amount of plastid glycolipids produced through the endoplasmic reticulum pathway was suppressed in Mppah mutants. Phospholipids accumulated in the mutants under N starvation. These results reveal that MpPAH modulates plastid glycolipid synthesis through the endoplasmic reticulum pathway more so than what has been observed for Arabidopsis PAH; moreover, unlike Arabidopsis, MpPAH is crucial for M. polymorpha growth regardless of nutrient availability.
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Affiliation(s)
- Misao Shimojo
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan
| | - Masashi Nakamura
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan
| | - Ginga Kitaura
- Graduate School of Science, Kobe University, Kobe, 657-8501, Japan
| | - Yuta Ihara
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan
| | - Shinsuke Shimizu
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan
| | - Koichi Hori
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan
| | - Masako Iwai
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan
| | - Hiroyuki Ohta
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan
| | | | - Mie Shimojima
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan.
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Sakai R, Goto-Inoue N, Yamashita H, Aimoto N, Kitai Y, Maruyama T. Smart utilization of betaine lipids in the giant clam Tridacna crocea. iScience 2023; 26:107250. [PMID: 37485344 PMCID: PMC10362313 DOI: 10.1016/j.isci.2023.107250] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2023] [Revised: 05/14/2023] [Accepted: 06/26/2023] [Indexed: 07/25/2023] Open
Abstract
The giant clam Tridacna crocea thrives in poorly nourished coral reef water by forming a holobiont with zooxanthellae and utilizing photosynthetic products of the symbiont. However, detailed metabolic crosstalk between clams and symbionts is elusive. Here, we discovered that the nonphosphorous microalgal betaine lipid DGCC (diacylglycerylcarboxy-hydroxymethylcholine) and its deacylated derivative GCC are present in all tissues and organs, including algae-free sperm and eggs, and are metabolized. Colocalization of DGCC and PC (phosphatidylcholine) evidenced by MS imaging suggested that DGCC functions as a PC substitute. The high content of GCC in digestive diverticula (DD) suggests that the algal DGCC was digested in DD for further utilization. Lipidomics analysis showing the organ-specific distribution pattern of DGCC species suggests active utilization of DGCC as membrane lipids in the clam. Thus, the utilization of zooxanthellal DGCC in animal cells is a unique evolutionary outcome in phosphorous-deficient coral reef waters.
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Affiliation(s)
- Ryuichi Sakai
- Faculty and Graduate School of Fisheries Sciences, Hokkaido University, 3-1-1 Minato-cho, Hakodate 041-8611, Japan
| | - Naoko Goto-Inoue
- Department of Marine Science and Resources, College of Bioresource Sciences, Nihon University, 1866 Kameino, Fujisawa, Kanagawa 252-0880, Japan
| | - Hiroshi Yamashita
- Fisheries Technology Institute, Japan Fisheries Research and Education Agency, 148 Fukai-Ohta, Ishigaki, Okinawa 907-0451, Japan
| | - Naoya Aimoto
- Faculty and Graduate School of Fisheries Sciences, Hokkaido University, 3-1-1 Minato-cho, Hakodate 041-8611, Japan
| | - Yuto Kitai
- Faculty and Graduate School of Fisheries Sciences, Hokkaido University, 3-1-1 Minato-cho, Hakodate 041-8611, Japan
| | - Tadashi Maruyama
- School of Marine Biosciences, Kitasato University, 1-15-1, Kitazato, Minami, Sagamihara, Kanagawa 252-0374, Japan
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Calderini ML, Pääkkönen S, Salmi P, Peltomaa E, Taipale SJ. Temperature, phosphorus and species composition will all influence phytoplankton production and content of polyunsaturated fatty acids. JOURNAL OF PLANKTON RESEARCH 2023; 45:625-635. [PMID: 37483907 PMCID: PMC10361808 DOI: 10.1093/plankt/fbad026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Accepted: 05/08/2023] [Indexed: 07/25/2023]
Abstract
Temperature increases driven by climate change are expected to decrease the availability of polyunsaturated fatty acids in lakes worldwide. Nevertheless, a comprehensive understanding of the joint effects of lake trophic status, nutrient dynamics and warming on the availability of these biomolecules is lacking. Here, we conducted a laboratory experiment to study how warming (18-23°C) interacts with phosphorus (0.65-2.58 μM) to affect phytoplankton growth and their production of polyunsaturated fatty acids. We included 10 species belonging to the groups diatoms, golden algae, cyanobacteria, green algae, cryptophytes and dinoflagellates. Our results show that both temperature and phosphorus will boost phytoplankton growth, especially stimulating certain cyanobacteria species (Microcystis sp.). Temperature and phosphorus had opposing effects on polyunsaturated fatty acid proportion, but responses are largely dependent on species. Eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA) synthesizing species did not clearly support the idea that warming decreases the production or content of these essential polyunsaturated fatty acids. Our results suggest that warming may have different effects on the polyunsaturated fatty acid availability in lakes with different nutrient levels, and that different species within the same phytoplankton group can have contrasting responses to warming. Therefore, we conclude that future production of EPA and DHA is mainly determined by species composition.
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Affiliation(s)
| | - Salli Pääkkönen
- Spectral Imaging Laboratory, Faculty of Information Technology, University of Jyväskylä, P.O. BOX 35 FI-40014, Jyväskylä Finland
| | - Pauliina Salmi
- Spectral Imaging Laboratory, Faculty of Information Technology, University of Jyväskylä, P.O. BOX 35 FI-40014, Jyväskylä Finland
| | - Elina Peltomaa
- Department of Forest Sciences, University of Helsinki, P.O. Box 27 FI-00014, Helsinki, Finland
| | - Sami J Taipale
- Department of Biological and Environmental Science, University of Jyväskylä, P.O. BOX 35 FI-40014, Jyväskylä, Finland
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Jardim T, Domingues MRM, Alves E. An overview on lipids in nuts and oily fruits: oil content, lipid composition, health effects, lipidomic fingerprinting and new biotechnological applications of their by-products. Crit Rev Food Sci Nutr 2023:1-29. [PMID: 37178132 DOI: 10.1080/10408398.2023.2208666] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Tree nuts and oily fruits are used as a diet complement and are highly consumed worldwide. The production and consumption of these foods have been increasing, and an enormous global market value is forecasted for 2023. Besides their high nutritional value and lipid content, they provide health benefits to fat metabolism, heart, skin, and brain. The industrial by-products of these oily foods represent promising raw materials for many industries. However, the lipidomic analysis of nuts and oily fruits is still in its early stages. State-of-the-art analytical approaches for the lipid profiling and fingerprinting of nuts and oily fruits have been developed using high-performance liquid chromatography and high-resolution mass spectrometry for the accurate identification and structural characterization at the molecular species level. It is expected to bring a new understanding of these everyday foods' nutritional and functional value. This review comprises the oil content and lipid composition of various nuts and oily fruits, particularly those mostly consumed worldwide and having recognized beneficial health effects, biological activities associated with the lipids from different oily foodstuffs, analytical methodologies to analyze lipids in nuts and oily fruits, and the potential biotechnological applications of their industrial by-products for a lipid-based commercial valorization.
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Affiliation(s)
- Tiago Jardim
- Mass Spectrometry Centre, LAQV-REQUIMTE, Department of Chemistry, University of Aveiro, Aveiro, Portugal
| | - M Rosário M Domingues
- Mass Spectrometry Centre, LAQV-REQUIMTE, Department of Chemistry, University of Aveiro, Aveiro, Portugal
- CESAM - Centre for Environmental and Marine Studies, Department of Chemistry, University of Aveiro, Aveiro, Portugal
| | - Eliana Alves
- Mass Spectrometry Centre, LAQV-REQUIMTE, Department of Chemistry, University of Aveiro, Aveiro, Portugal
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Parmar P, Kumar R, Neha Y, Srivatsan V. Microalgae as next generation plant growth additives: Functions, applications, challenges and circular bioeconomy based solutions. FRONTIERS IN PLANT SCIENCE 2023; 14:1073546. [PMID: 37063190 PMCID: PMC10101342 DOI: 10.3389/fpls.2023.1073546] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Accepted: 01/05/2023] [Indexed: 06/19/2023]
Abstract
Sustainable agriculture practices involve the application of environment-friendly plant growth promoters and additives that do not negatively impact the health of the ecosystem. Stringent regulatory frameworks restricting the use of synthetic agrochemicals and the increase in demand for organically grown crops have paved the way for the development of novel bio-based plant growth promoters. In this context, microalgae biomass and derived agrochemicals offer novel sources of plant growth promotors that enhance crop productivity and impart disease resistance. These beneficial effects could be attributed to the presence of wide range of biomolecules such as soluble amino acid (AA), micronutrients, polysaccharides, phytohormones and other signaling molecules in microalgae biomass. In addition, their phototrophic nature, high photosynthetic efficiency, and wide environmental adaptability make them an attractive source of biostimulants, biofertilizers and biopesticides. The present review aims to describe the various plant growth promoting metabolites produced by microalgae and their effects on plant growth and productivity. Further, the effects elicited by microalgae biostimulants with respect to different modes of applications such as seed treatments, foliar spray and soil/root drenching is reviewed in detail. In addition, the ability of microalgae metabolites to impart tolerance against various abiotic and biotic stressors along with the mechanism of action is discussed in this paper. Although the use of microalgae based biofertilizers and biostimulants is gaining popularity, the high nutrient and water requirements and energy intensive downstream processes makes microalgae based technology commercially unsustainable. Addressing this challenge, we propose a circular economy model of microalgae mediated bioremediation coupled with biorefinery approaches of generating high value metabolites along with biofertilizer applications. We discuss and review new trends in enhancing the sustainability of microalgae biomass production by co-cultivation of algae with hydroponics and utilization of agriculture effluents.
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Affiliation(s)
- Priyanka Parmar
- Applied Phycology and Food Technology Laboratory, Council of Scientific and Industrial Research (CSIR)- Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, India
- Academy of Scientific and Innovative Research (AcSIR), Council of Scientific and Industrial Research -Human Resource Development Centre (CSIR-HRDC), Ghaziabad, Uttar Pradesh, India
| | - Raman Kumar
- Applied Phycology and Food Technology Laboratory, Council of Scientific and Industrial Research (CSIR)- Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, India
- Academy of Scientific and Innovative Research (AcSIR), Council of Scientific and Industrial Research -Human Resource Development Centre (CSIR-HRDC), Ghaziabad, Uttar Pradesh, India
| | - Yograj Neha
- Applied Phycology and Food Technology Laboratory, Council of Scientific and Industrial Research (CSIR)- Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, India
| | - Vidyashankar Srivatsan
- Applied Phycology and Food Technology Laboratory, Council of Scientific and Industrial Research (CSIR)- Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, India
- Academy of Scientific and Innovative Research (AcSIR), Council of Scientific and Industrial Research -Human Resource Development Centre (CSIR-HRDC), Ghaziabad, Uttar Pradesh, India
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Honda S, Yamazaki Y, Mukada T, Cheng W, Chuba M, Okazaki Y, Saito K, Oikawa A, Maruyama H, Wasaki J, Wagatsuma T, Tawaraya K. Lipidome Profiling of Phosphorus Deficiency-Tolerant Rice Cultivars Reveals Remodeling of Membrane Lipids as a Mechanism of Low P Tolerance. PLANTS (BASEL, SWITZERLAND) 2023; 12:1365. [PMID: 36987053 PMCID: PMC10057753 DOI: 10.3390/plants12061365] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/09/2022] [Revised: 03/15/2023] [Accepted: 03/16/2023] [Indexed: 06/19/2023]
Abstract
Plants have evolved various mechanisms for low P tolerance, one of which is changing their membrane lipid composition by remodeling phospholipids with non-phospholipids. The objective of this study was to investigate the remodeling of membrane lipids among rice cultivars under P deficiency. Rice (Oryza sativa L.) cultivars (Akamai, Kiyonishiki, Akitakomachi, Norin No. 1, Hiyadateine, Koshihikari, and Netaro) were grown in 0 (-P) and 8 (+P) mg P L-1 solution cultures. Shoots and roots were collected 5 and 10 days after transplanting (DAT) in solution culture and subjected to lipidome profiling using liquid chromatography-mass spectrometry. Phosphatidylcholine (PC)34, PC36, phosphatidylethanolamine (PE)34, PE36, phosphatidylglycerol (PG)34, phosphatidylinositol (PI)34 were the major phospholipids and digalactosyldiacylglycerol (DGDG)34, DGDG36, 1,2-diacyl-3-O-alpha-glucuronosylglycerol (GlcADG)34, GlcADG36, monogalactosyldiacylglycerol (MGDG)34, MGDG36, sulfoquinovosyldiacylglycerol (SQDG)34 and SQDG36 were the major non-phospholipids. Phospholipids were lower in the plants that were grown under -P conditions than that in the plants that were grown under +P for all cultivars at 5 and 10 DAT. The levels of non-phospholipids were higher in -P plants than that in +P plants of all cultivars at 5 and 10 DAT. Decomposition of phospholipids in roots at 5 DAT correlated with low P tolerance. These results suggest that rice cultivars remodel membrane lipids under P deficiency, and the ability of remodeling partly contributes to low P tolerance.
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Affiliation(s)
- Soichiro Honda
- Faculty of Agriculture, Yamagata University, Tsuruoka 997-8555, Japan
| | - Yumiko Yamazaki
- Faculty of Agriculture, Yamagata University, Tsuruoka 997-8555, Japan
| | - Takumi Mukada
- Faculty of Agriculture, Yamagata University, Tsuruoka 997-8555, Japan
| | - Weiguo Cheng
- Faculty of Agriculture, Yamagata University, Tsuruoka 997-8555, Japan
| | - Masaru Chuba
- Yamagata Integrated Agricultural Research Center, Tsuruoka 997-7601, Japan
| | - Yozo Okazaki
- RIKEN Center for Sustainable Resource Science, Yokohama 230-0045, Japan
| | - Kazuki Saito
- RIKEN Center for Sustainable Resource Science, Yokohama 230-0045, Japan
| | - Akira Oikawa
- Faculty of Agriculture, Yamagata University, Tsuruoka 997-8555, Japan
- RIKEN Center for Sustainable Resource Science, Yokohama 230-0045, Japan
| | - Hayato Maruyama
- Research Faculty of Agriculture, Hokkaido University, Sapporo 060-8589, Japan
| | - Jun Wasaki
- Graduate School of Integrated Sciences for Life, Hiroshima University, Higashi-Hiroshima 739-8521, Japan
| | - Tadao Wagatsuma
- Faculty of Agriculture, Yamagata University, Tsuruoka 997-8555, Japan
| | - Keitaro Tawaraya
- Faculty of Agriculture, Yamagata University, Tsuruoka 997-8555, Japan
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Light modulates the lipidome of the photosynthetic sea slug Elysia timida. Biochim Biophys Acta Mol Cell Biol Lipids 2023; 1868:159249. [PMID: 36336252 DOI: 10.1016/j.bbalip.2022.159249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Revised: 10/27/2022] [Accepted: 10/28/2022] [Indexed: 11/06/2022]
Abstract
Long-term kleptoplasty, the capability to retain functional stolen chloroplasts (kleptoplasts) for several weeks to months, has been shown in a handful of Sacoglossa sea slugs. One of these sea slugs is Elysia timida, endemic to the Mediterranean, which retains functional chloroplasts of the macroalga Acetabularia acetabulum. To understand how light modulates the lipidome of E. timida, sea slug specimens were subjected to two different 4-week light treatments: regular light and quasi-dark conditions. Lipidomic analyses were performed by HILIC-HR-ESI-MS and MS/MS. Quasi-dark conditions caused a reduction in the amount of essential lipids for photosynthetic membranes, such as glycolipids, indicating high level of kleptoplast degradation under sub-optimal light conditions. However, maximum photosynthetic capacities (Fv/Fm) were identical in both light treatments (≈0.75), showing similar kleptoplast functionality and suggesting that older kleptoplasts were targeted for degradation. Although more stable, the phospholipidome showed differences between light treatments: the amount of certain lipid species of phosphatidylethanolamine (PE), phosphatidylinositol (PI), and phosphatidylglycerol (PG) decreased under quasi-dark conditions, while other lipid species of phosphatidylcholine (PC), PE and lyso-PE (LPE) increased. Quasi-dark conditions promoted a decrease in the relative abundance of polyunsaturated fatty acids. These results suggest a light-driven remodelling of the lipidome according to the functions of the different lipids and highlight the plasticity of polar lipids in the photosynthetic sea slug E. timida.
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Transcriptomic-Guided Phosphonate Utilization Analysis Unveils Evidence of Clathrin-Mediated Endocytosis and Phospholipid Synthesis in the Model Diatom, Phaeodactylum tricornutum. mSystems 2022; 7:e0056322. [PMID: 36317887 PMCID: PMC9765203 DOI: 10.1128/msystems.00563-22] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
Phosphonates are important components of marine organic phosphorus, but their bioavailability and catabolism by eukaryotic phytoplankton remain enigmatic. Here, diatom Phaeodactylum tricornutum was used to investigate the bioavailability of phosphonates and describe the underlying molecular mechanism. The results showed that 2-aminoethylphosphonic acid (2-AEP) can be utilized as an alternative phosphorus source. Comparative transcriptomics revealed that the utilization of 2-AEP comprised 2 steps, including molecular uptake through clathrin-mediated endocytosis and incorporation into the membrane phospholipids in the form of diacylglyceryl-2-AEP (DAG-2-AEP). In the global ocean, we found the prevalence and dynamic expression pattern of key genes that are responsible for vesicle formation (CLTC, AP-2) and DAG-AEP synthesis (PCYT2, EPT1) in diatom assemblages. This study elucidates a distinctive mechanism of phosphonate utilization by diatoms, and discusses the ecological implications. IMPORTANCE Phosphonates contribute ~25% of total dissolved organic phosphorus in the ocean, and are found to be important for marine phosphorus biogeochemical cycle. As a type of biogenic phosphonate produced by microorganisms, 2-aminoethylphosphonic acid (2-AEP) widely exists in the ocean. It is well known that 2-AEP can be cleaved and utilized by prokaryotes, but its ability to support the growth of eukaryotic phytoplankton remains unclear. Our research identified the bioavailability of 2-AEP for the diatom Phaeodactylum tricornutum, and proposed a distinctive metabolic pathway of 2-AEP utilization. Different from the enzymatic hydrolysis of phosphonates, the results suggested that P. tricornutum utilizes 2-AEP by incorporating it into phospholipid instead of cleaving the C-P bond. Moreover, the ubiquitous distribution of associated representative gene transcripts in the environmental assemblages and the higher gene transcript abundance in the cold regions were observed, which suggests the possible environmental adaption of 2-AEP utilization by diatoms.
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Çakirsoy I, Miyamoto T, Ohtake N. Physiology of microalgae and their application to sustainable agriculture: A mini-review. FRONTIERS IN PLANT SCIENCE 2022; 13:1005991. [PMID: 36466259 PMCID: PMC9712798 DOI: 10.3389/fpls.2022.1005991] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2022] [Accepted: 10/24/2022] [Indexed: 05/13/2023]
Abstract
Concern that depletion of fertilizer feedstocks, which are a finite mineral resource, threatens agricultural sustainability has driven the exploration of sustainable methods of soil fertilization. Given that microalgae, which are unicellular photosynthetic organisms, can take up nutrients efficiently from water systems, their application in a biological wastewater purification system followed by the use of their biomass as a fertilizer alternative has attracted attention. Such applications of microalgae would contribute to the accelerated recycling of nutrients from wastewater to farmland. Many previous reports have provided information on the physiological characteristics of microalgae that support their utility. In this review, we focus on recent achievements of studies on microalgal physiology and relevant applications and outline the prospects for the contribution of microalgae to the establishment of sustainable agricultural practices.
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Affiliation(s)
- Iffet Çakirsoy
- Graduate School of Science and Technology, Niigata University, Niigata, Japan
| | - Takuji Miyamoto
- Sakeology Center, Niigata University, Niigata, Japan
- *Correspondence: Takuji Miyamoto, ; Norikuni Ohtake,
| | - Norikuni Ohtake
- Graduate School of Science and Technology, Niigata University, Niigata, Japan
- *Correspondence: Takuji Miyamoto, ; Norikuni Ohtake,
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Hulatt CJ, Wijffels RH, Posewitz MC. The Genome of the Haptophyte Diacronema lutheri (Pavlova lutheri, Pavlovales): A Model for Lipid Biosynthesis in Eukaryotic Algae. Genome Biol Evol 2021; 13:6337978. [PMID: 34343248 PMCID: PMC8379373 DOI: 10.1093/gbe/evab178] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/27/2021] [Indexed: 12/28/2022] Open
Abstract
Haptophytes are biogeochemically and industrially important protists with underexplored genomic diversity. We present a nuclear genome assembly for the class Pavlovales, which was assembled with PacBio long-read data into highly contiguous sequences. We sequenced strain Diacronema lutheri NIVA-4/92, formerly known as Pavlova lutheri, because it has established roles in aquaculture and has been a key organism for studying microalgal lipid biosynthesis. Our data show that D. lutheri has the smallest and most streamlined haptophycean genome assembled to date, with an assembly size of 43.503 Mb and 14,446 protein-coding genes. Together with its high nuclear GC content, Diacronema is an important genus for investigating selective pressures on haptophyte genome evolution, contrasting with the much larger and more repetitive genome of the coccolithophore Emiliania huxleyi. The D. lutheri genome will be a valuable resource for resolving the genetic basis of algal lipid biosynthesis and metabolic remodeling that takes place during adaptation and stress response in natural and engineered environments.
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Affiliation(s)
- Chris J Hulatt
- Faculty of Biosciences and Aquaculture, Nord University, Mørkvedbukta Research Station, Bodø, Norway.,Department of Chemistry, Colorado School of Mines, Golden, Colorado, USA
| | - René H Wijffels
- Faculty of Biosciences and Aquaculture, Nord University, Mørkvedbukta Research Station, Bodø, Norway.,Bioprocess Engineering, AlgaePARC, Wageningen University and Research, The Netherlands
| | - Matthew C Posewitz
- Department of Chemistry, Colorado School of Mines, Golden, Colorado, USA
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15
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Nicolò MS, Gugliandolo C, Rizzo MG, Zammuto V, Cicero N, Dugo G, Guglielmino SPP. Nutritional conditions of the novel freshwater Coccomyxa AP01 for versatile fatty acids composition. J Appl Microbiol 2021; 132:401-412. [PMID: 34260800 PMCID: PMC9292221 DOI: 10.1111/jam.15223] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Revised: 06/24/2021] [Accepted: 07/09/2021] [Indexed: 01/25/2023]
Abstract
AIMS This study was to analyse the biomass production and fatty acids (FAs) profiles in a newly isolated chlorophyte, namely Coccomyxa AP01, under nutritionally balanced (NB) conditions (comparing nitrate and urea as nitrogen sources) and nitrogen or phosphate deprivation. METHODS AND RESULTS Lipid yields was about 30%-40% of dried biomasses in all examined nutritional conditions. Under NB conditions, lipids were principally constituted by monounsaturated FAs, mainly represented by oleic acid, and saturated and polyunsaturated FAs at similar concentrations. Nutrients deprivation induced remarkable changes in FAs profiles, with the highest amounts of saturated (42%-46%), followed by similar amounts of monounsaturated and polyunsaturated, and the emergence of rare long-chain FAs. Under phosphate deprivation, biomass yield was similar to NB conditions, with the highest yield of saturated (mainly palmitic acid) and of polyunsaturated FAs (33%) (mainly linoleic and linolenic acids). CONCLUSIONS Balanced or deprived nutritional conditions in Coccomyxa AP01 induced a selective production and composition of FAs. The phosphate-deprivation condition concomitantly provided high biomass yield and the production of high value saturated and polyunsaturated FAs with industrial interest. SIGNIFICANCE AND IMPACT OF THE STUDY Coccomyxa AP01 could be considered a promising source of different FAs, including also docosapentaenoic acid, for several commercial purposes spanning from biodiesel production, pharmaceutical and cosmetic applications to innovative aquaculture fish feeds.
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Affiliation(s)
- Marco Sebastiano Nicolò
- Department of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina, Messina, Italy
| | - Concetta Gugliandolo
- Department of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina, Messina, Italy
| | - Maria Giovanna Rizzo
- Department of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina, Messina, Italy
| | - Vincenzo Zammuto
- Department of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina, Messina, Italy
| | - Nicola Cicero
- Department of Biomedical and Dental Sciences and Morpho-functional Imaging, University of Messina, Messina, Italy
| | - Giacomo Dugo
- Department of Biomedical and Dental Sciences and Morpho-functional Imaging, University of Messina, Messina, Italy
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Guéguen N, Le Moigne D, Amato A, Salvaing J, Maréchal E. Lipid Droplets in Unicellular Photosynthetic Stramenopiles. FRONTIERS IN PLANT SCIENCE 2021; 12:639276. [PMID: 33968100 PMCID: PMC8100218 DOI: 10.3389/fpls.2021.639276] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/08/2020] [Accepted: 03/17/2021] [Indexed: 06/12/2023]
Abstract
The Heterokonta or Stramenopile phylum comprises clades of unicellular photosynthetic species, which are promising for a broad range of biotechnological applications, based on their capacity to capture atmospheric CO2 via photosynthesis and produce biomolecules of interest. These molecules include triacylglycerol (TAG) loaded inside specific cytosolic bodies, called the lipid droplets (LDs). Understanding TAG production and LD biogenesis and function in photosynthetic stramenopiles is therefore essential, and is mostly based on the study of a few emerging models, such as the pennate diatom Phaeodactylum tricornutum and eustigmatophytes, such as Nannochloropsis and Microchloropsis species. The biogenesis of cytosolic LD usually occurs at the level of the endoplasmic reticulum. However, stramenopile cells contain a complex plastid deriving from a secondary endosymbiosis, limited by four membranes, the outermost one being connected to the endomembrane system. Recent cell imaging and proteomic studies suggest that at least some cytosolic LDs might be associated to the surface of the complex plastid, via still uncharacterized contact sites. The carbon length and number of double bonds of the acyl groups contained in the TAG molecules depend on their origin. De novo synthesis produces long-chain saturated or monounsaturated fatty acids (SFA, MUFA), whereas subsequent maturation processes lead to very long-chain polyunsaturated FA (VLC-PUFA). TAG composition in SFA, MUFA, and VLC-PUFA reflects therefore the metabolic context that gave rise to the formation of the LD, either via an early partitioning of carbon following FA de novo synthesis and/or a recycling of FA from membrane lipids, e.g., plastid galactolipids or endomembrane phosphor- or betaine lipids. In this review, we address the relationship between cytosolic LDs and the complex membrane compartmentalization within stramenopile cells, the metabolic routes leading to TAG accumulation, and the physiological conditions that trigger LD production, in response to various environmental factors.
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17
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Rees TAV, Raven JA. The maximum growth rate hypothesis is correct for eukaryotic photosynthetic organisms, but not cyanobacteria. THE NEW PHYTOLOGIST 2021; 230:601-611. [PMID: 33449358 PMCID: PMC8048539 DOI: 10.1111/nph.17190] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2020] [Accepted: 12/23/2020] [Indexed: 05/12/2023]
Abstract
The (maximum) growth rate (µmax ) hypothesis predicts that cellular and tissue phosphorus (P) concentrations should increase with increasing growth rate, and RNA should also increase as most of the P is required to make ribosomes. Using published data, we show that though there is a strong positive relationship between the µmax of all photosynthetic organisms and their P content (% dry weight), leading to a relatively constant P productivity, the relationship with RNA content is more complex. In eukaryotes there is a strong positive relationship between µmax and RNA content expressed as % dry weight, and RNA constitutes a relatively constant 25% of total P. In prokaryotes the rRNA operon copy number is the important determinant of the amount of RNA present in the cell. The amount of phospholipid expressed as % dry weight increases with increasing µmax in microalgae. The relative proportions of each of the five major P-containing constituents is remarkably constant, except that the proportion of RNA is greater and phospholipids smaller in prokaryotic than eukaryotic photosynthetic organisms. The effect of temperature differences between studies was minor. The evidence for and against P-containing constituents other than RNA being involved with ribosome synthesis and functioning is discussed.
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Affiliation(s)
- T. A. V. Rees
- Leigh Marine LaboratoryInstitute of Marine ScienceUniversity of AucklandAuckland1142New Zealand
| | - John A. Raven
- Division of Plant ScienceUniversity of Dundee at the James Hutton InstituteInvergowrie, Dundee,DD2 5DAUK
- Climate Change ClusterFaculty of ScienceUniversity of TechnologySydney, UltimoNSW2007Australia
- School of Biological SciencesUniversity of Western AustraliaCrawleyWA6009Australia
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18
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Bustamam MSA, Pantami HA, Azizan A, Shaari K, Min CC, Abas F, Nagao N, Maulidiani M, Banerjee S, Sulaiman F, Ismail IS. Complementary Analytical Platforms of NMR Spectroscopy and LCMS Analysis in the Metabolite Profiling of Isochrysis galbana. Mar Drugs 2021; 19:md19030139. [PMID: 33801258 PMCID: PMC7998644 DOI: 10.3390/md19030139] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Revised: 02/25/2021] [Accepted: 02/26/2021] [Indexed: 12/24/2022] Open
Abstract
This study was designed to profile the metabolites of Isochrysis galbana, an indigenous and less explored microalgae species. 1H Nuclear Magnetic Resonance (NMR) spectroscopy and Liquid Chromatography-Mass Spectrometry (LCMS) were used to establish the metabolite profiles of five different extracts of this microalga, which are hexane (Hex), ethyl acetate (EtOAc), absolute ethanol (EtOH), EtOH:water 1:1 (AqE), and 100% water (Aq). Partial least square discriminant analysis (PLS–DA) of the generated profiles revealed that EtOAc and Aq extracts contain a diverse range of metabolites as compared to the other extracts with a total of twenty-one metabolites, comprising carotenoids, polyunsaturated fatty acids, and amino acids, that were putatively identified from the NMR spectra. Meanwhile, thirty-two metabolites were successfully annotated from the LCMS/MS data, ten of which (palmitic acid, oleic acid, α-linolenic acid, arachidic acid, cholesterol, DHA, DPA, fucoxanthin, astaxanthin, and pheophytin) were similar to those present in the NMR profile. Another eleven glycerophospholipids were discovered using MS/MS-based molecular network (MN) platform. The results of this study, besides providing a better understanding of I.galbana’s chemical make-up, will be of importance in exploring this species potential as a feed ingredient in the aquaculture industry.
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Affiliation(s)
- Muhammad Safwan Ahamad Bustamam
- Natural Medicine and Products Research Laboratory, Institute of Bioscience, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia; (M.S.A.B.); (A.A.); (K.S.); (F.A.); (S.B.); (F.S.)
| | - Hamza Ahmed Pantami
- Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia;
| | - Awanis Azizan
- Natural Medicine and Products Research Laboratory, Institute of Bioscience, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia; (M.S.A.B.); (A.A.); (K.S.); (F.A.); (S.B.); (F.S.)
| | - Khozirah Shaari
- Natural Medicine and Products Research Laboratory, Institute of Bioscience, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia; (M.S.A.B.); (A.A.); (K.S.); (F.A.); (S.B.); (F.S.)
- Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia;
| | - Chong Chou Min
- Department of Aquaculture, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia; (C.C.M.); (N.N.)
| | - Faridah Abas
- Natural Medicine and Products Research Laboratory, Institute of Bioscience, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia; (M.S.A.B.); (A.A.); (K.S.); (F.A.); (S.B.); (F.S.)
| | - Norio Nagao
- Department of Aquaculture, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia; (C.C.M.); (N.N.)
| | - Maulidiani Maulidiani
- Faculty of Science and Marine Environment, Universiti Malaysia Terengganu, Kuala Nerus 21030, Terengganu, Malaysia;
| | - Sanjoy Banerjee
- Natural Medicine and Products Research Laboratory, Institute of Bioscience, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia; (M.S.A.B.); (A.A.); (K.S.); (F.A.); (S.B.); (F.S.)
| | - Fadzil Sulaiman
- Natural Medicine and Products Research Laboratory, Institute of Bioscience, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia; (M.S.A.B.); (A.A.); (K.S.); (F.A.); (S.B.); (F.S.)
| | - Intan Safinar Ismail
- Natural Medicine and Products Research Laboratory, Institute of Bioscience, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia; (M.S.A.B.); (A.A.); (K.S.); (F.A.); (S.B.); (F.S.)
- Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia;
- Correspondence: ; Tel.: +60-3-9769-7492
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19
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Qin X, Shi X, Gao Y, Dai X, Ou L, Guan W, Lu S, Cen J, Qi Y. Alkaline phosphatase activity during a phosphate replete dinoflagellate bloom caused by Prorocentrum obtusidens. HARMFUL ALGAE 2021; 103:101979. [PMID: 33980429 DOI: 10.1016/j.hal.2021.101979] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Revised: 01/03/2021] [Accepted: 01/16/2021] [Indexed: 06/12/2023]
Abstract
Prorocentrum obtusidens Schiller (formerly P. donghaiense Lu), a harmful algal species common in the East China Sea (ECS), often thrives with the depletion of phosphate. Three cruises in the spring of 2013 sampled an entire P. obtusidens bloom process to investigate the dynamics of alkaline phosphatase activity (APA) and phosphorus (P) status of the bloom species using both bulk and cell-specific assays. Unlike previous studies, the bloom of P. obtusidens occurred in a phosphate replete environment. Very high APA, with an average of 76.62 ± 90.24 nmol L-1 h-1, was observed during the early-bloom phase, a value comparable to that in low phosphate environments. The alkaline phosphatase (AP) hydrolytic kinetics also suggested a more efficient AP system with a lower half-saturation constant (Ks), but higher maximum potential hydrolytic velocity (Vmax) in this period. The APA decreased significantly with an average of 24.98 ± 30.98 nmol L-1 h-1 when the bloom reached its peak. The lack of a correlation between dissolved inorganic phosphate (DIP) or dissolved organic phosphate (DOP) concentration and APA suggested that the APA was regulated by the internal P growth demand, rather than the external P availability during the phosphate replete P. obtusidens bloom. These findings facilitate an understanding of the P. obtusidens acclimation strategy with respect to P variations in terms of AP expression during blooms in the ECS.
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Affiliation(s)
- Xianling Qin
- School of Life Sciences, and State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
| | - Xiaoyong Shi
- College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao, China; National Marine Hazard Mitigation Service, Beijing, China
| | - Yahui Gao
- School of Life Sciences, and State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
| | - Xinfeng Dai
- Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China
| | - Linjian Ou
- Research Center of Harmful Algae and Marine Biology, and Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institutes, Jinan University, Guangzhou, China.
| | - Weibing Guan
- Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China
| | - Songhui Lu
- Research Center of Harmful Algae and Marine Biology, and Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institutes, Jinan University, Guangzhou, China.
| | - Jingyi Cen
- Research Center of Harmful Algae and Marine Biology, and Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institutes, Jinan University, Guangzhou, China
| | - Yuzao Qi
- Research Center of Harmful Algae and Marine Biology, and Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institutes, Jinan University, Guangzhou, China
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20
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Dell'Aquila G, Maier UG. Specific acclimations to phosphorus limitation in the marine diatom Phaeodactylum tricornutum. Biol Chem 2020; 401:1495-1501. [PMID: 32845857 DOI: 10.1515/hsz-2020-0197] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Accepted: 08/19/2020] [Indexed: 11/15/2022]
Abstract
Phosphorus (P) is a crucial element and diatoms, unicellular phototrophic organisms, evolved efficient strategies to handle limiting phosphorus concentrations in the oceans. In the last decade, several groups investigated the model diatom Phaeodactylum tricornutum concerning phosphate homeostasis mechanisms. Here, we summarize the actual status of knowledge by linking the available data sets, thereby indicating experimental limits but also future research directions.
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Affiliation(s)
- Gianluca Dell'Aquila
- Cell Biology Laboratory, Philipps Universität Marburg, Karl-von-Frisch Strasse 8, D-35043Marburg, Germany
| | - Uwe G Maier
- SYNMIKRO Research Center, Hans-Meerwein-Str. 6, D-35032Marburg, Germany
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21
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Proteomic and Transcriptomic Patterns during Lipid Remodeling in Nannochloropsis gaditana. Int J Mol Sci 2020; 21:ijms21186946. [PMID: 32971781 PMCID: PMC7554720 DOI: 10.3390/ijms21186946] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Revised: 09/16/2020] [Accepted: 09/17/2020] [Indexed: 12/24/2022] Open
Abstract
Nutrient limited conditions are common in natural phytoplankton communities and are often used to increase the yield of lipids from industrial microalgae cultivations. Here we studied the effects of bioavailable nitrogen (N) and phosphorus (P) deprivation on the proteome and transcriptome of the oleaginous marine microalga Nannochloropsis gaditana. Turbidostat cultures were used to selectively apply either N or P deprivation, controlling for variables including the light intensity. Global (cell-wide) changes in the proteome were measured using Tandem Mass Tag (TMT) and LC-MS/MS, whilst gene transcript expression of the same samples was quantified by Illumina RNA-sequencing. We detected 3423 proteins, where 1543 and 113 proteins showed significant changes in abundance in N and P treatments, respectively. The analysis includes the global correlation between proteomic and transcriptomic data, the regulation of subcellular proteomes in different compartments, gene/protein functional groups, and metabolic pathways. The results show that triacylglycerol (TAG) accumulation under nitrogen deprivation was associated with substantial downregulation of protein synthesis and photosynthetic activity. Oil accumulation was also accompanied by a diverse set of responses including the upregulation of diacylglycerol acyltransferase (DGAT), lipase, and lipid body associated proteins. Deprivation of phosphorus had comparatively fewer, weaker effects, some of which were linked to the remodeling of respiratory metabolism.
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22
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Murakami H, Kakutani N, Kuroyanagi Y, Iwai M, Hori K, Shimojima M, Ohta H. MYB-like transcription factor NoPSR1 is crucial for membrane lipid remodeling under phosphate starvation in the oleaginous microalga Nannochloropsis oceanica. FEBS Lett 2020; 594:3384-3394. [PMID: 32770739 DOI: 10.1002/1873-3468.13902] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2020] [Revised: 08/03/2020] [Accepted: 08/03/2020] [Indexed: 11/07/2022]
Abstract
Membrane lipid remodeling under phosphate (Pi) limitation, a process that replaces structural membrane phospholipids with nonphosphorus lipids, is a widely observed adaptive response in plants and algae. Here, we identified the transcription factor phosphorus starvation response 1 (NoPSR1) as an indispensable player for regulating membrane lipid conversion during Pi starvation in the microalga Nannochloropsis oceanica. Knocking out NoPSR1 scarcely perturbed membrane lipid composition under Pi-sufficient conditions but significantly impaired dynamic alteration in membrane lipids during Pi starvation. In contrast, the absence of NoPSR1 led to no obvious change in cell proliferation or storage lipid accumulation under either nutrient-sufficient or Pi-deficient conditions. Our results demonstrate a key factor controlling the membrane lipid profile during the Pi starvation response in N. oceanica.
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Affiliation(s)
- Hiroki Murakami
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan
| | - Natsue Kakutani
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan
| | - Yunato Kuroyanagi
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan
| | - Masako Iwai
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan
| | - Koichi Hori
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan
| | - Mie Shimojima
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan
| | - Hiroyuki Ohta
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan
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23
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Huang B, Mimouni V, Lukomska E, Morant-Manceau A, Bougaran G. Carbon Partitioning and Lipid Remodeling During Phosphorus and Nitrogen Starvation in the Marine Microalga Diacronema lutheri (Haptophyta). JOURNAL OF PHYCOLOGY 2020; 56:908-922. [PMID: 32215912 DOI: 10.1111/jpy.12995] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Accepted: 03/03/2020] [Indexed: 06/10/2023]
Abstract
The domesticated marine microalga Diacronema lutheri is of great interest for producing various highly valuable molecules like lipids, particularly long-chain polyunsaturated fatty acids (LC-PUFA). In this study, we investigated the impact of phosphorus (P) and nitrogen (N) starvation on growth, carbon fixation (photosynthetic activity) and partitioning, and membrane lipid remodeling in this alga during batch culture. Our results show that the photosynthetic machinery was similarly affected by P and N stress. Under N starvation, we observed a much lower photosynthetic rate and biomass productivity. The degradation and re-use of cellular N-containing compounds contributed to triacylglycerol (TAG) accumulation. On the other hand, P-starved cells maintained pigment content and a carbon partitioning pattern more similar to the control, ensuring a high biomass. Betaine lipids constitute the major compounds of non-plastidial membranes, which are rich in eicosapentaenoic (EPA) and docosahexaenoic (DHA) acids. Under P and N starvations, EPA was transferred from the recycling of membrane polar lipids, most likely contributing to TAG accumulation.
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Affiliation(s)
- Bing Huang
- Laboratoire Mer, Molécules, Santé (IUML - FR 3473 CNRS), UFR Sciences et Techniques, Le Man Université, Avenue Olivier Messiaen, 72085, Le Mans Cedex 09, France
| | - Virginie Mimouni
- Laboratoire Mer, Molécules, Santé (IUML - FR 3473 CNRS), IUT de Laval, Département Génie Biologique, Le Mans Université, 52 rue des Docteurs Calmette et Guérin, 53020, Laval Cedex 9, France
| | - Ewa Lukomska
- Laboratoire Physiologie et Biotechnologie des Algues, IFREMER, rue de l'Ile d'Yeu, BP 21105, 44311, Nantes Cedex 03, France
| | - Annick Morant-Manceau
- Laboratoire Mer, Molécules, Santé (IUML - FR 3473 CNRS), UFR Sciences et Techniques, Le Man Université, Avenue Olivier Messiaen, 72085, Le Mans Cedex 09, France
| | - Gaël Bougaran
- Laboratoire Physiologie et Biotechnologie des Algues, IFREMER, rue de l'Ile d'Yeu, BP 21105, 44311, Nantes Cedex 03, France
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Surviving Starvation: Proteomic and Lipidomic Profiling of Nutrient Deprivation in the Smallest Known Free-Living Eukaryote. Metabolites 2020; 10:metabo10070273. [PMID: 32635273 PMCID: PMC7407893 DOI: 10.3390/metabo10070273] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2020] [Revised: 06/17/2020] [Accepted: 06/27/2020] [Indexed: 11/16/2022] Open
Abstract
Marine phytoplankton, comprising cyanobacteria, micro- and pico-algae are key to photosynthesis, oxygen production and carbon assimilation on Earth. The unicellular green picoalga Ostreococcus tauri holds a key position at the base of the green lineage of plants, which makes it an interesting model organism. O. tauri has adapted to survive in low levels of nitrogen and phosphorus in the open ocean and also during rapid changes in the levels of these nutrients in coastal waters. In this study, we have employed untargeted proteomic and lipidomic strategies to investigate the molecular responses of O. tauri to low-nitrogen and low-phosphorus environments. In the absence of external nitrogen, there was an elevation in the expression of ammonia and urea transporter proteins together with an accumulation of triglycerides. In phosphate-limiting conditions, the expression levels of phosphokinases and phosphate transporters were increased, indicating an attempt to maximise scavenging opportunities as opposed to energy conservation conditions. The production of betaine lipids was also elevated, highlighting a shift away from phospholipid metabolism. This finding was supported by the putative identification of betaine synthase in O. tauri. This work offers additional perspectives on the complex strategies that underpin the adaptive processes of the smallest known free-living eukaryote to alterations in environmental conditions.
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25
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Dell’Aquila G, Zauner S, Heimerl T, Kahnt J, Samel-Gondesen V, Runge S, Hempel F, Maier UG. Mobilization and Cellular Distribution of Phosphate in the Diatom Phaeodactylum tricornutum. FRONTIERS IN PLANT SCIENCE 2020; 11:579. [PMID: 32582227 PMCID: PMC7283521 DOI: 10.3389/fpls.2020.00579] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/25/2019] [Accepted: 04/17/2020] [Indexed: 06/11/2023]
Abstract
Unicellular organisms that live in marine environments must cope with considerable fluctuations in the availability of inorganic phosphate (Pi). Here, we investigated the extracellular Pi concentration-dependent expression, as well as the intracellular or extracellular localization, of phosphatases and phosphate transporters of the diatom Phaeodactylum tricornutum. We identified Pi-regulated plasma membrane-localized, ER-localized, and secreted phosphatases, in addition to plasma membrane-localized, vacuolar membrane-localized, and plastid-surrounding membrane-localized phosphate transporters that were also regulated in a Pi concentration-dependent manner. These studies not only add further knowledge to already existing transcriptomic data, but also highlight the capacity of the diatom to distribute Pi intracellularly and to mobilize Pi from extracellular and intracellular resources.
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Affiliation(s)
| | - Stefan Zauner
- Laboratory for Cell Biology, Philipps University of Marburg, Marburg, Germany
| | | | - Jörg Kahnt
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
| | - Vera Samel-Gondesen
- Laboratory for Cell Biology, Philipps University of Marburg, Marburg, Germany
| | - Simon Runge
- Laboratory for Cell Biology, Philipps University of Marburg, Marburg, Germany
| | | | - Uwe G. Maier
- Laboratory for Cell Biology, Philipps University of Marburg, Marburg, Germany
- SYNMIKRO Research Center, Marburg, Germany
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26
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Liang J, Iqbal S, Wen F, Tong M, Liu J. Phosphorus-Induced Lipid Class Alteration Revealed by Lipidomic and Transcriptomic Profiling in Oleaginous Microalga Nannochloropsis sp. PJ12. Mar Drugs 2019; 17:md17090519. [PMID: 31484443 PMCID: PMC6780086 DOI: 10.3390/md17090519] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2019] [Revised: 08/29/2019] [Accepted: 09/02/2019] [Indexed: 12/22/2022] Open
Abstract
Phytoplankton are primary producers in the marine ecosystem, where phosphorus is often a limiting factor of their growth. Hence, they have evolved strategies to recycle phosphorus by replacing membrane phospholipids with phosphorus-free lipids. However, mechanisms for replacement of lipid classes remain poorly understood. To improve our understanding, we performed the lipidomic and transcriptomic profiling analyses of an oleaginous marine microalga Nannochloropsis sp. PJ12 in response to phosphorus depletion (PD) and replenishing. In this study, by using (liquid chromatography couple with tandem mass spectrometry) LC-MS/MS-based lipidomic analysis, we show that membrane phospholipid levels are significantly reduced upon PD, while phosphorus-free betaine lipid levels are increased. However, levels of phosphorus-free photosynthetic galactolipid and sulfolipid are not increased upon PD, consistent with the reduced photosynthetic activity. RNA-seq-based transcriptomic analysis indicates that enzymes involved in phospholipid recycling and phosphorus-free lipid synthesis are upregulated, supporting the lipidomic analysis. Furthermore, enzymes involved in FASII (type II fatty acid synthesis) elongation cycle upon PD are transcriptionally downregulated. EPA (eicosapentaenoic acid) level decrease upon PD is revealed by both GC-MS (gas chromatography coupled with mass spectrometry) and LC-MS/MS-based lipidomic analyses. PD-induced alteration is reversed after phosphorus replenishing. Taken together, our results suggest that the alteration of lipid classes upon environmental change of phosphorus is a result of remodeling rather than de novo synthesis in Nannochloropsis sp. PJ12.
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Affiliation(s)
- Jibei Liang
- Ocean College, Zhejiang University, Zhoushan 316000, China.
- School of Marine Science and Technology, Zhejiang Ocean University, Zhoushan 316022, China.
| | - Sunya Iqbal
- Ocean College, Zhejiang University, Zhoushan 316000, China.
| | - Fang Wen
- Ocean College, Zhejiang University, Zhoushan 316000, China.
| | - Mengmeng Tong
- Ocean College, Zhejiang University, Zhoushan 316000, China.
| | - Jianhua Liu
- School of Marine Science and Technology, Zhejiang Ocean University, Zhoushan 316022, China.
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Chen M, Bi R, Chen X, Ding Y, Zhang H, Li L, Zhao M. Stoichiometric and sterol responses of dinoflagellates to changes in temperature, nutrient supply and growth phase. ALGAL RES 2019. [DOI: 10.1016/j.algal.2019.101609] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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28
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Kokabi K, Gorelova O, Ismagulova T, Itkin M, Malitsky S, Boussiba S, Solovchenko A, Khozin-Goldberg I. Metabolomic foundation for differential responses of lipid metabolism to nitrogen and phosphorus deprivation in an arachidonic acid-producing green microalga. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2019; 283:95-115. [PMID: 31128719 DOI: 10.1016/j.plantsci.2019.02.008] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2018] [Revised: 01/05/2019] [Accepted: 02/11/2019] [Indexed: 05/08/2023]
Abstract
The green oleaginous microalga Lobosphaera incisa accumulates storage lipids triacylglycerols (TAG) enriched in the long-chain polyunsaturated fatty acid arachidonic acid under nitrogen (N) deprivation. In contrast, under phosphorous (P) deprivation, the production of the monounsaturated oleic acid prevails. We compared physiological responses, ultrastructural, and metabolic consequences of L. incisa acclimation to N and P deficiency to provide novel insights into the key determinants of ARA accumulation. Differential responses to nutrient deprivation on growth performance, carbon-to-nitrogen stoichiometry, membrane lipid composition and TAG accumulation were demonstrated. Ultrastructural analyses suggested a dynamic role for vacuoles in sustaining cell homeostasis under conditions of different nutrient availability and their involvement in autophagy in L. incisa. Paralleling ARA-rich TAG accumulation in lipid droplets, N deprivation triggered intensive chloroplast dismantling and promoted catabolic processes. Metabolome analysis revealed depletion of amino acids and pyrimidines, and repression of numerous biosynthetic hubs to favour TAG biosynthesis under N deprivation. Under P deprivation, despite the relatively low growth penalties, the presence of the endogenous P reserves and the characteristic lipid remodelling, metabolic signatures of energy deficiency were revealed. Metabolome adjustments to P deprivation included depletion in ATP and phosphorylated nucleotides, increased levels of TCA-cycle intermediates and osmoprotectants. We conclude that characteristic cellular and metabolome adjustments tailor the adaptive responses of L. incisa to N and P deprivation modulating its LC-PUFA production.
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Affiliation(s)
- Kamilya Kokabi
- Microalgal Biotechnology Laboratory, The French Associates Institute for Agriculture and Biotechnology of Drylands, The J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede-Boqer Campus, Midreshet Ben-Gurion, 8499000, Israel
| | - Olga Gorelova
- Department of Bioengineering, Faculty of Biology, Moscow State University, GSP-1, Moscow, 119234, Russia
| | - Tatiana Ismagulova
- Department of Bioengineering, Faculty of Biology, Moscow State University, GSP-1, Moscow, 119234, Russia
| | - Maxim Itkin
- Metabolic Profiling Unit, Life Science Core Facilities, Weizmann Institute of Science, Rehovot, Israel
| | - Sergey Malitsky
- Metabolic Profiling Unit, Life Science Core Facilities, Weizmann Institute of Science, Rehovot, Israel
| | - Sammy Boussiba
- Microalgal Biotechnology Laboratory, The French Associates Institute for Agriculture and Biotechnology of Drylands, The J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede-Boqer Campus, Midreshet Ben-Gurion, 8499000, Israel
| | - Alexei Solovchenko
- Department of Bioengineering, Faculty of Biology, Moscow State University, GSP-1, Moscow, 119234, Russia; Peoples Friendship University of Russia (RUDN University), Moscow, 117198, Russia
| | - Inna Khozin-Goldberg
- Microalgal Biotechnology Laboratory, The French Associates Institute for Agriculture and Biotechnology of Drylands, The J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede-Boqer Campus, Midreshet Ben-Gurion, 8499000, Israel.
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29
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Huang B, Marchand J, Thiriet-Rupert S, Carrier G, Saint-Jean B, Lukomska E, Moreau B, Morant-Manceau A, Bougaran G, Mimouni V. Betaine lipid and neutral lipid production under nitrogen or phosphorus limitation in the marine microalga Tisochrysis lutea (Haptophyta). ALGAL RES 2019. [DOI: 10.1016/j.algal.2019.101506] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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30
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Meng Y, Cao X, Yang M, Liu J, Yao C, Xue S. Glycerolipid remodeling triggered by phosphorous starvation and recovery in Nannochloropsis oceanica. ALGAL RES 2019. [DOI: 10.1016/j.algal.2019.101451] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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31
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Stoyneva-Gärtner M, Uzunov B, Gärtner G, Borisova C, Draganova P, Radkova M, Stoykova P, Atanassov I. Current bioeconomical interest in stramenopilic Eustigmatophyceae: a review. BIOTECHNOL BIOTEC EQ 2019. [DOI: 10.1080/13102818.2019.1573154] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Affiliation(s)
- Maya Stoyneva-Gärtner
- Department of Botany, Faculty of Biology, Sofia University “St Kliment Ohridski”, Sofia, Bulgaria
| | - Blagoy Uzunov
- Department of Botany, Faculty of Biology, Sofia University “St Kliment Ohridski”, Sofia, Bulgaria
| | - Georg Gärtner
- Institute of Botany, Faculty of Biology, University of Innsbruck, Innsbruck, Austria
| | - Cvetanka Borisova
- Department of Botany, Faculty of Biology, Sofia University “St Kliment Ohridski”, Sofia, Bulgaria
| | - Petya Draganova
- Department of Botany, Faculty of Biology, Sofia University “St Kliment Ohridski”, Sofia, Bulgaria
| | - Mariana Radkova
- Functional Genetics Legumes Group, AgroBioInstitute, Agricultural Academy, Sofia, Bulgaria
| | - Petya Stoykova
- Functional Genetics Legumes Group, AgroBioInstitute, Agricultural Academy, Sofia, Bulgaria
| | - Ivan Atanassov
- Molecular Genetics Group, AgroBioInstitute, Agricultural Academy, Sofia, Bulgaria
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32
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Becker KW, Collins JR, Durham BP, Groussman RD, White AE, Fredricks HF, Ossolinski JE, Repeta DJ, Carini P, Armbrust EV, Van Mooy BAS. Daily changes in phytoplankton lipidomes reveal mechanisms of energy storage in the open ocean. Nat Commun 2018; 9:5179. [PMID: 30518752 PMCID: PMC6281602 DOI: 10.1038/s41467-018-07346-z] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2018] [Accepted: 10/25/2018] [Indexed: 12/31/2022] Open
Abstract
Sunlight is the dominant control on phytoplankton biosynthetic activity, and darkness deprives them of their primary external energy source. Changes in the biochemical composition of phytoplankton communities over diel light cycles and attendant consequences for carbon and energy flux in environments remain poorly elucidated. Here we use lipidomic data from the North Pacific subtropical gyre to show that biosynthesis of energy-rich triacylglycerols (TAGs) by eukaryotic nanophytoplankton during the day and their subsequent consumption at night drives a large and previously uncharacterized daily carbon cycle. Diel oscillations in TAG concentration comprise 23 ± 11% of primary production by eukaryotic nanophytoplankton representing a global flux of about 2.4 Pg C yr−1. Metatranscriptomic analyses of genes required for TAG biosynthesis indicate that haptophytes and dinoflagellates are active members in TAG production. Estimates suggest that these organisms could contain as much as 40% more calories at sunset than at sunrise due to TAG production. Day-night cycles in the biochemical composition of phytoplankton remain poorly understood. Here, Becker et al. use lipidomic and transcriptomic data from the North Pacific subtropical gyre to describe a daily cycle of production and consumption of energy-rich lipids by eukaryotic phytoplankton.
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Affiliation(s)
- Kevin W Becker
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, 02543, USA
| | - James R Collins
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, 02543, USA.,Massachusetts Institute of Technology/Woods Hole Oceanographic Institution Joint Program in Oceanography, Woods Hole, MA, 02543, USA.,School of Oceanography and eScience Institute, University of Washington, Seattle, WA, 98195, USA
| | - Bryndan P Durham
- School of Oceanography, University of Washington, Seattle, WA, 98195, USA
| | - Ryan D Groussman
- School of Oceanography, University of Washington, Seattle, WA, 98195, USA
| | - Angelicque E White
- College of Earth, Ocean, and Atmospheric Sciences, Oregon State University, Corvallis, OR, 97331, USA
| | - Helen F Fredricks
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, 02543, USA
| | - Justin E Ossolinski
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, 02543, USA
| | - Daniel J Repeta
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, 02543, USA
| | - Paul Carini
- Department of Microbiology, Oregon State University, Corvallis, OR, 97331, USA.,Department of Soil, Water and Environmental Science, University of Arizona, Tucson, AZ, 85721, USA
| | | | - Benjamin A S Van Mooy
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, 02543, USA.
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33
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Cañavate JP, Armada I, Hachero-Cruzado I. Common and Species-Specific Effects of Phosphate on Marine Microalgae Fatty Acids Shape Their Function in Phytoplankton Trophic Ecology. MICROBIAL ECOLOGY 2017; 74:623-639. [PMID: 28411302 DOI: 10.1007/s00248-017-0983-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2017] [Accepted: 04/10/2017] [Indexed: 05/08/2023]
Abstract
The use of fatty acids (FA) to infer structure of phytoplankton assemblages and as indicators of microalgae nutritional value is acquiring relevance in modern phytoplankton ecology and new advances concerning factors influencing FA variability among microalgae are demanded. In this regard, the relationship between phosphorus and FA remains particularly little studied in marine phytoplankton. In the present study, we focus on phosphate effects on FA from a diversified set of marine microalgae and provide new insights into the applicability of FA in phytoplankton trophic ecology. Phosphate deprivation mainly induced monounsaturated FA production in eight out of nine microalgae and their changes were species-specific, with palmitoleic acid exhibiting extreme variation and discriminating between haptophyte classes. The important phosphate-induced and interspecific variability found for oleic acid was perceived as a concern for the current application of this FA as a trophic position indicator in grazers. Chloroplast C-16 and C-18 polyunsaturated FA were more affected by phosphate than C-20 and C-22 highly unsaturated FA (HUFA). The relative stability of stearidonic acid to phosphate in cryptophytes and haptophytes pinpointed this FA as a suited marker for both microalgae groups. Taken all species together, phosphate deprivation and taxonomy accounted for 20.8 and 50.7% of total FA variation, respectively. HUFA were minimally affected by phosphate indicating their suitability as indicators of phytoplankton trophic value. The asymptotic relationship between HUFA and phosphorus cell content suggested mineral composition (phosphorus) could be more important than HUFA content as attribute of marine microalgae nutritional value at the species level.
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Affiliation(s)
- José Pedro Cañavate
- IFAPA Centro El Toruño. Andalusia Research and Training Institute for Fisheries and Agriculture, 11500-El Puerto de Santa María, Cádiz, Spain.
| | - Isabel Armada
- IFAPA Centro El Toruño. Andalusia Research and Training Institute for Fisheries and Agriculture, 11500-El Puerto de Santa María, Cádiz, Spain
| | - Ismael Hachero-Cruzado
- IFAPA Centro El Toruño. Andalusia Research and Training Institute for Fisheries and Agriculture, 11500-El Puerto de Santa María, Cádiz, Spain
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34
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Hess SK, Lepetit B, Kroth PG, Mecking S. Production of chemicals from microalgae lipids - status and perspectives. EUR J LIPID SCI TECH 2017. [DOI: 10.1002/ejlt.201700152] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Sandra K. Hess
- Department of Chemistry; Chair of Chemical Materials Science; University of Konstanz; Konstanz Germany
| | - Bernard Lepetit
- Department of Biology; Plant Ecology; University of Konstanz; Konstanz Germany
| | - Peter G. Kroth
- Department of Biology; Plant Ecology; University of Konstanz; Konstanz Germany
| | - Stefan Mecking
- Department of Chemistry; Chair of Chemical Materials Science; University of Konstanz; Konstanz Germany
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35
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Cañavate JP, Armada I, Hachero-Cruzado I. Aspects of phosphorus physiology associated with phosphate-induced polar lipid remodelling in marine microalgae. JOURNAL OF PLANT PHYSIOLOGY 2017; 214:28-38. [PMID: 28423307 DOI: 10.1016/j.jplph.2017.03.019] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2017] [Revised: 03/27/2017] [Accepted: 03/28/2017] [Indexed: 05/10/2023]
Abstract
Marine microalgae exhibit a diversified phosphorus physiology and have also been recently found to show high inter-taxa variability in their phosphate induced-polar lipids' remodelling. Identification of phosphorus physiology aspects that are more related to lipid remodelling can contribute to better understanding of such intricate phytoplankton lipid metabolism. Therefore, some aspects of phosphorus physiology related to its uptake, storage and use were evaluated in a taxonomically diversified group of nine marine microalgae that was arranged into three subgroups, each of them including species showing similar polar lipid responses to phosphate. Luxury phosphate uptake (PU) was the physiological aspect best associated to microalgal polar lipid metabolism as it was maximal in species (Picochlorum atomus, Tetraselmis suecica and Nannochloropsis gaditana) that were able to counterbalance between phospholipids (PL) and betaine lipids (BL). Cryptophytes (Rhodomonas baltica, Chroomonas placoidea), characterized by their constitutive BL and flexible PL contents in response to phosphate, had almost no luxury PU and showed higher phosphorus cell quota (QP) under phosphate deprivation. Haptophyes (Isochrysis galbana, Diacronema vlkianum), with constitutive BL contents and permanently minimal PL contents, showed the lowest QP when deprived of phosphate while their luxury PU was below that for green microalgae. Induction of alkaline phosphatase activity following phosphate depletion was maximal in diatoms (Phaeodactylum tricornutum, Chaetoceros gracilis) and I. galbana but it was unrelated to lipid remodelling. Despite strong influence of taxonomy, polar lipid remodelling accounted for 38.8% of total variation when microalgae were ordinated using their physiological responses to phosphorus as descriptive variables.
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Affiliation(s)
- José Pedro Cañavate
- IFAPA Centro El Toruño. Andalusia Research and Training Institute for Fisheries and Agriculture, 11500-El Puerto de Santa María, Cádiz, Spain.
| | - Isabel Armada
- IFAPA Centro El Toruño. Andalusia Research and Training Institute for Fisheries and Agriculture, 11500-El Puerto de Santa María, Cádiz, Spain
| | - Ismael Hachero-Cruzado
- IFAPA Centro El Toruño. Andalusia Research and Training Institute for Fisheries and Agriculture, 11500-El Puerto de Santa María, Cádiz, Spain
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