Temporal variation in pelagic food chain length in response to environmental change

Amino acid δ15N in eye lens laminae reveals life-time ontogenetic trophic shifts of a highly migratory species

Investigating the feeding ecology through the ontogenesis of highly migratory species such as the Pacific Bluefin tuna (PBFT; Thunnus orientalis) is difficult due to its extensive home range and cross-oceanic migration. Here, we show the potential of conducting nitrogen stable isotope (δ15N) analyses in bulk tissue and amino acids (AAs) in consecutive eye lens laminae of PBFT to reconstruct the trophic life history for an individual tuna. The δ15Nbulk profiles between individuals caught in the wild and pen-raised were compared. For all individuals, δ15Nbulk values increased with increasing eye lens diameter or fork length, and exhibited low variation among individual profiles despite tuna being captured in different months. Large δ15Nbulk shifts (6.8‰-8.5‰) were quantified between the first and last deposited laminae for each individual, suggesting major ontogenetic changes in either foraging areas or trophic position. AA δ15N values indicate that this highly migratory schooling predator switches feeding areas from lower to higher δ15N baseline values, reflecting feeding on both sides of the north Pacific, and tends to feed on prey of higher trophic position as it grows. Together, stable isotope analysis in bulk tissue and individual AAs in eye lens laminae could be a powerful approach to investigate changes in the foraging habitat and trophic status of highly migratory species.

Perturbations in a pelagic food web during the NE pacific large marine heatwave and persistent harmful diatom blooms

Unprecedented warm ocean conditions, driven by the Large Marine Heatwave (LMH) and the 2015-16 El Niño in the Northeast Pacific favored pervasive toxigenic Pseudo-nitzschia spp. blooms that caused widespread ecological impacts, but little is known about the magnitude to which marine food webs were altered. Here, we assessed the trophic transfer of domoic acid (DA; a neurotoxin) and changes in trophic position from multiple key species during the peak of the LMH and El Niño in 2015 in comparison with 2018, a reference non-anomalous warm year. DA and amino acid nitrogen isotopes (δ15N AAs) were quantified using liquid and gas chromatography mass spectrometry, respectively. Our integrative approach revealed extremely high levels of DA in anchovy viscera (>3000 μg/g) with contrasting baseline values (δ15N Phe) for southern California fish. These results together with data from northern CA revealed an unforeseen latitudinal isotopic variation in key DA vectors along California, possibly driven by anomalous restructuring of water masses. At the regional level, the observed cross-shore differences in baseline isotope values and DA toxicity suggest distinct pathways for DA trophic transfer for nearshore vs. offshore sites. Given the high levels of environmental disturbance during the LMH and persistence of toxigenic P. australis blooms, our resultant higher trophic position proxies in 2015 compared to 2018 were particularly unexpected. Such results highlight complex trophic interactions, where the trophic status of some species increased while others decreased in response to changes in net primary productivity, and biodiversity, and abundance of forage species. Our study demonstrates the use of δ15N AAs to identify pathways of N and DA trophic transfer and to quantify shifts in animal trophic position, a critical facet of understanding the response of food webs to climate change and DA production.

Spatial and temporal variations in trophic structure of fish assemblages in the Yellow Sea revealed by C and N stable isotopes

In this study, we assessed spatial and temporal variations in the trophic structure of fish assemblages in the Yellow Sea during spring and summer 2022 and compared their isotopic niches between the Provisional Measure Zone (PMZ) and Korea's west areas (non-PMZ) within the Yellow Sea. Spatial and temporal differences in the diversity and dominant species of fish assemblages were found between the PMZ and non-PMZ areas between the seasons. The mean δ13C values of fish assemblages were relatively higher in the non-PMZ areas than in the PMZ areas. In contrast, no significant differences were found in the mean δ15N values between the areas. Generally, the isotopic niche indices were relatively narrow in the PMZ areas compared to those in the non-PMZ areas. Overall, these spatial differences between the PMZ and non-PMZ areas suggest different trophic diversity of fish assemblages, resulting from site-specific variations in environmental conditions and community composition.

Trophic assessment of three sympatric batoid species in the Southern Gulf of California

The competitive exclusion principle establishes that the coexistence of closely related species requires a certain degree of resource partitioning. However, populations have individuals with different morphological or behavioral traits (e.g., maturity stages, sexes, temporal or spatial segregation). This interaction often results in a multi-level differentiation in food preferences and habits. We explored such resource partitioning between and within three batoid species: Hypanus dipterurus, Narcine entemedor, and Rhinoptera steindachneri in the southern Gulf of California, Mexico, using a combination of stomach content (excluding R. steindachneri) and stable isotope analyses. We found a clear differentiation between H. dipterurus and N. entemedor, where the latter exhibited more benthic habitats, supported by a greater association to infaunal prey and higher δ13C values. Though the degree and patterns of intra-specific segregation varied among species, there was a notable differentiation in both sex and stage of maturity, corresponding to changes in specialization (i.e., isotopic niche breadth) or trophic spectrum (varying prey importance and isotopic values per group). This work is a promising step towards understanding the dietary niche dynamics of these species in a potentially important feeding area within the southern Gulf of California, as well as the biological and ecological mechanisms that facilitate their coexistence.

Temperature, productivity, and habitat characteristics collectively drive lake food web structure

While many efforts have been devoted to understand variations in food web structure among terrestrial and aquatic ecosystems, the environmental factors influencing food web structure at large spatial scales remain hardly explored. Here, we compiled biodiversity inventories to infer food web structure of 67 French lakes using an allometric niche-based model and tested how environmental variables (temperature, productivity, and habitat) influence them. By applying a multivariate analysis on 20 metrics of food web topology, we found that food web structural variations are represented by two distinct complementary and independent structural descriptors. The first is related to the overall trophic diversity, whereas the second is related to the vertical structure. Interestingly, the trophic diversity descriptor was mostly explained by habitat size (26.7% of total deviance explained) and habitat complexity (20.1%) followed by productivity (dissolved organic carbon: 16.4%; nitrate: 9.1%) and thermal variations (10.7%). Regarding the vertical structure descriptor, it was mostly explained by water thermal seasonality (39.0% of total deviance explained) and habitat depth (31.9%) followed by habitat complexity (8.5%) and size (5.5%) as well as annual mean temperature (5.6%). Overall, we found that temperature, productivity, and habitat characteristics collectively shape lake food web structure. We also found that intermediate levels of productivity, high levels of temperature (mean and seasonality), as well as large habitats are associated with the largest and most complex food webs. Our findings, therefore, highlight the importance of focusing on these three components especially in the context of global change, as significant structural changes in aquatic food webs could be expected under increased temperature, pollution, and habitat alterations.

A sustainable thermochemical conversion of animal biomass to N-heterocycles

The production of high-valued organonitrogen chemicals, especially N-heterocycles, requires artificial N2 fixation accompanied by the consumption of fossil resources. To avoid the use of these energy- and resource-intensive processes, we develop a sustainable strategy to convert nitrogen-rich animal biomass into N-heterocycles through a thermochemical conversion process (TCP) under atmospheric pressure. A high percentage of N-heterocycles (87.51%) were obtained after the TCP of bovine skin due to the abundance of nitrogen-containing amino acids (e.g., glycine, proline, and l-hydroxyproline). Animal biomass with more diverse amino acid composition (e.g., muscles) yielded higher concentrations of amines/amides and nitriles after TCP. In addition, by introducing catalysts (KOH for pyrrole and Al2O3 for cyclo-Gly–Pro) to TCP, the production quantities of pyrrole and cyclo-Gly–Pro increased to 30.79 mg g−1 and 38.88 mg g−1, respectively. This approach can be used to convert the significant animal biomass waste generated annually from animal culls into valued organonitrogen chemicals while circumventing NH3-dependent and petrochemical-dependent synthesis routes.

Graphical Abstract

Amino acid nitrogen and carbon isotope data: Potential and implications for ecological studies

Explaining food web dynamics, stability, and functioning depend substantially on understanding of feeding relations within a community. Bulk stable isotope ratios (SIRs) in natural abundance are well-established tools to express direct and indirect feeding relations as continuous variables across time and space. Along with bulk SIRs, the SIRs of individual amino acids (AAs) are now emerging as a promising and complementary method to characterize the flow and transformation of resources across a diversity of organisms, from microbial domains to macroscopic consumers. This significant AA-SIR capacity is based on empirical evidence that a consumer's SIR, specific to an individual AA, reflects its diet SIR coupled with a certain degree of isotopic differences between the consumer and its diet. However, many empirical ecologists are still unfamiliar with the scope of applicability and the interpretative power of AA-SIR. To fill these knowledge gaps, we here describe a comprehensive approach to both carbon and nitrogen AA-SIR assessment focusing on two key topics: pattern in AA-isotope composition across spatial and temporal scales, and a certain variability of AA-specific isotope differences between the diet and the consumer. On this basis we review the versatile applicability of AA-SIR to improve our understanding of physiological processes as well as food web functioning, allowing us to reconstruct dominant basal dietary sources and trace their trophic transfers at the specimen and community levels. Given the insightful and opportunities of AA-SIR, we suggest future applications for the dual use of carbon and nitrogen AA-SIR to study more realistic food web structures and robust consumer niches, which are often very difficult to explain in nature.

Bulk and amino acid nitrogen isotopes suggest shifting nitrogen balance of pregnant sharks across gestation

Nitrogen isotope (δ¹⁵N) analysis of bulk tissues and individual amino acids (AA) can be used to assess how consumers maintain nitrogen balance with broad implications for predicting individual fitness. For elasmobranchs, a ureotelic taxa thought to be constantly nitrogen limited, the isotopic effects associated with nitrogen-demanding events such as prolonged gestation remain unknown. Given the linkages between nitrogen isotope variation and consumer nitrogen balance, we used AA δ¹⁵N analysis of muscle and liver tissue collected from female bonnethead sharks (Sphyrna tiburo, n = 16) and their embryos (n = 14) to explore how nitrogen balance may vary across gestation. Gestational stage was a strong predictor of bulk tissue and AA δ¹⁵N values in pregnant shark tissues, decreasing as individuals neared parturition. This trend was observed in trophic (e.g., Glx, Ala, Val), source (e.g., Lys), and physiological (e.g., Gly) AAs. Several potential mechanisms may explain these results including nitrogen conservation, scavenging, and bacterially mediated breakdown of urea to free ammonia that is used to synthesize AAs. We observed contrasting patterns of isotopic discrimination in embryo tissues, which generally became enriched in ¹⁵N throughout development. This was attributed to greater excretion of nitrogenous waste in more developed embryos, and the role of physiologically sensitive AAs (i.e., Gly and Ser) to molecular processes such as nucleotide synthesis. These findings underscore how AA isotopes can quantify shifts in nitrogen balance, providing unequivocal evidence for the role of physiological condition in driving δ¹⁵N variation in both bulk tissues and individual AAs.

Trophic Dynamics and Feeding Ecology of Skipjack Tuna (Katsuwonus pelamis) off Eastern and Western Taiwan

The skipjack tuna (Katsuwonus pelamis) is a mesopredator fish species with seasonal abundance in waters off Taiwan. Regional ecological and life-history information has been historically lacking for this species. In recent years, stable isotope analysis (SIA) of carbon and nitrogen has been used to assess predator feeding ecology and broader ecosystem trophic dynamics. This study evaluated comparative skipjack feeding ecology in distinct regions off Taiwan, combining traditional stomach content analysis with SIA of individuals off western (n = 43; 2020) and eastern (n = 347; 2012–2014 and n = 167; 2020) Taiwan. The stomach content analysis showed the most important prey to be ponyfish (Photopectoralis bindus) in western Taiwan and epipelagic squids (Myopsina spp.) and carangids (Decapterus macrosoma;) in eastern Taiwan from 2012 to 2014 and epipelagic carangids (Decapterus spp.) and flying fishes (Cheilopogon spp.) in eastern Taiwan in 2020, suggesting that the skipjack tuna is a generalist predator across regions. In contrast, time-integrated diet estimates from Bayesian mixing models indicated the importance of cephalopods and crustaceans as prey, potentially demonstrating more mesopelagic feeding in less productive waters during skipjack migrations outside the study regions. Skipjack off western Taiwan had a slightly higher estimated trophic position than in the waters off eastern Taiwan, potentially driven by the varying nutrient-driven pelagic food web structures. Skipjack SI values increased with body size off eastern Taiwan but not in western waters, suggesting that opportunistic predation can still result in different predator–prey size dynamics between regions.

Population structure in a continuously distributed coastal marine species, the harbor porpoise, based on microhaplotypes derived from poor-quality samples

Harbor porpoise in the North Pacific are found in coastal waters from southern California to Japan, but population structure is poorly known outside of a few local areas. We used multiplexed amplicon sequencing of 292 loci and genotyped clusters of single nucleotide polymoirphisms as microhaplotypes (N = 271 samples) in addition to mitochondrial (mtDNA) sequence data (N = 413 samples) to examine the genetic structure from samples collected along the Pacific coast and inland waterways from California to southern British Columbia. We confirmed an overall pattern of strong isolation-by-distance, suggesting that individual dispersal is restricted. We also found evidence of regions where genetic differences are larger than expected based on geographical distance alone, implying current or historical barriers to gene flow. In particular, the southernmost population in California is genetically distinct (F_ST  = 0.02 [microhaplotypes]; 0.31 [mtDNA]), with both reduced genetic variability and high frequency of an otherwise rare mtDNA haplotype. At the northern end of our study range, we found significant genetic differentiation of samples from the Strait of Georgia, previously identified as a potential biogeographical boundary or secondary contact zone between harbor porpoise populations. Association of microhaplotypes with remotely sensed environmental variables indicated potential local adaptation, especially at the southern end of the species' range. These results inform conservation and management for this nearshore species, illustrate the value of genomic methods for detecting patterns of genetic structure within a continuously distributed marine species, and highlight the power of microhaplotype genotyping for detecting genetic structure in harbor porpoises despite reliance on poor-quality samples.

Diet Shifts Explain Temporal Trends of Pollutant Levels in Indo-Pacific Humpback Dolphins (Sousa chinensis) from the Pearl River Estuary, China

We examined spatiotemporal trends of diet compositions and their relationship with pollutant accumulation levels in 46 weaning Indo-Pacific humpback dolphins (n = 46) from 2004 to 2017 in the Pearl River Estuary (PRE) based on blubber fatty acid signatures using quantitative fatty acid signature analysis in R (QFASAR). Fifty-one potential prey species were tested, among which 13 had a mean relative proportion greater than 1% in dolphin diets. Bombay duck was the predominant prey species, followed by Dussumier's thryssa and mullet, whereas other prey species were present at considerably reduced proportions in diets. The proportion of larger fishes (Bombay duck and mullet) in the diet has exhibited a significant decreasing trend in recent years, whereas the smaller fish (Dussumier's thryssa) steadily increased over the whole period, possibly due to the severe impacts of climate change and other human stressors on large fishes in estuarine waters. The proportions of Bombay duck in the diet were significantly and positively correlated with hepatic Cr levels in dolphins, whereas the temporal change in Bombay duck consumption mirrored that in the hepatic levels of several per- and polyfluoroalkyl substances, because Bombay duck was the most contaminated species among all the prey fishes.

Amino acid δ15N underestimation of cetacean trophic positions highlights limited understanding of isotopic fractionation in higher marine consumers

Compound-specific stable isotope analysis (CSIA) of amino acids (AAs) has been rapidly incorporated in ecological studies to resolve consumer trophic position (TP). Differential 15N fractionation of "trophic" AAs, which undergo trophic 15N enrichment, and "source" AAs, which undergo minimal trophic 15N enrichment and serve as a proxy for primary producer δ15N values, allows for internal calibration of TP. Recent studies, however, have shown the difference between source and trophic AA δ15N values in higher marine consumers is less than predicted from empirical studies of invertebrates and fish. To evaluate CSIA-AA for estimating TP of cetaceans, we compared source and trophic AA δ15N values of multiple tissues (skin, baleen, and dentine collagen) from five species representing a range of TPs: bowhead whales, beluga whales, short-beaked common dolphins, sperm whales, and fish-eating (FE) and marine mammal-eating (MME) killer whale ecotypes. TP estimates (TPCSIA) using several empirically derived equations and trophic discrimination factors (TDFs) were 1-2.5 trophic steps lower than stomach content-derived estimates (TPSC) for all species. Although TPCSIA estimates using dual TDF equations were in better agreement with TPSC estimates, our data do not support the application of universal or currently available dual TDFs to estimate cetacean TPs. Discrepancies were not simply due to inaccurate TDFs, however, because the difference between consumer glutamic acid/glutamine (Glx) and phenylalanine (Phe) δ15N values (δ15NGlx-Phe) did not follow expected TP order. In contrast to pioneering studies on invertebrates and fish, our data suggest trophic 15N enrichment of Phe is not negligible and should be examined among the potential mechanisms driving "compressed" and variable δ15NGlx-Phe values at high TPs. We emphasize the need for controlled diet studies to understand mechanisms driving AA-specific isotopic fractionation before widespread application of CSIA-AA in ecological studies of cetaceans and other marine consumers.

The correlation study between PCBs and δ15N values or FAs in fish collected from Dongting Lake

The toxicity of polychlorinated biphenyls (PCBs) and their transformation have been intensively investigated in recent years. However, the potential mechanisms of biotransformation in a lake food web remain unclear. To explore the correlation between the PCBs and δ¹⁵N values or FAs, six fish species were collected from Dongting Lake, and various tissues were dissected to analyze the δ¹⁵N values, FAs and PCBs. Based on the wet weight (ww), the concentration of ∑PCBs₁₁₅ ranged from 0.04 to 9.77 ng g^-1, and the highest level was found in the gonad of Cyprinus carpio. The toxicity equivalent (TEQ) of PCBs ranged from 0.003 to 2.39 pg g^-1, and the highest level was found in the fat of Silurus asotusy. The PCB levels in fish collected from Dongting Lake were at the low end of the global range. PCB28, 52, 95, 99, 101, 105 110, 118, 138, 153, 155 and 209 were found in all tissues. PCBs were distributed in a tissue-specific and species-specific manner in fish. PCB153 and 138 had a positive correlation with the TEQ in liver, gill, intestine and skin of fish on the basis of lipid weight (lw). Docosahexaenoic acid/eicosapentaenoic acid (DHA/EPA) and polyunsaturated fatty acid/saturated fatty acid (PUFA/SFA) had a positive correlation with some PCB congeners in the intestine. PCB52, ∑tetra-PCBs and Ind-PCBs had a positive correlation with the δ¹⁵N values in liver of fish on the basis of ww. PUFA/SFA and DHA/EPA might be indicators for the transfer of PCB congeners.

Trophic Patterns of Bighead Carp and Silver Carp Follow the Seasonality of Resource Availability

The influence of seasonality of the aquatic environment on food web has been notoriously understudied in empirical ecology. In this study, we focus on seasonal changes in one key attribute of a food web, the trophic level. We determine whether seasonal variations of fish trophic levels could be indicated by the change in food resources. Silver carp (Hypophthalmichthys molitrix) and bighead carp (H. nobilis) were used to explore the responses of trophic levels of the filter-feeding fish to seasonal variations of food resources. Combined stable isotopic analysis and dietary analysis revealed that filter-feeding fish tended to have a higher trophic level in spring (May) and autumn (September and October). This may result from the abundant density of food resources (zooplankton and phytoplankton) and fish flexible foraging strategy, as we predicted that the trophic level follows the seasonality of food availability. Pearson’ correlation analysis and a structural equation model showed that seasonal variation of total phosphorus and water temperature could indirectly affect trophic levels of silver carp and bighead carp by mediating the abundance of phytoplankton and zooplankton directly and indirectly along the food chain. According to these findings, the seasonal variation of food resources could be an important indicator of the temporal dynamics of the food web trophic pattern in freshwater ecosystems.

Consumer trophic positions respond variably to seasonally fluctuating environments

The effects of environmental seasonality on food web structure have been notoriously understudied in empirical ecology. Here, we focus on seasonal changes in one key attribute of a food web, consumer trophic position. We ask whether fishes inhabiting tropical river-floodplain ecosystems behave as seasonal omnivores, by shifting their trophic positions in relation to the annual flood pulse, or whether they feed at the same trophic position all year, as much empirical work implicitly assumes. Using dietary data from the Tonle Sap Lake, Cambodia, and a literature review, we find evidence that some fishes, especially small piscivores, increased consumption of invertebrates and/or plant material during the wet season, as predicted. However, nitrogen stable isotope (δ¹⁵ N) data for 26 Tonle Sap fishes, spanning a broader range of functional groups, uncovered high variation in seasonal trophic position responses among species (0 to ±0.52 trophic positions). Based on these findings, species respond to the flood pulse differently. Diverse behavioral responses to seasonality, underpinned by spatiotemporal variation at multiple scales, could be central for rerouting matter and energy flow in these dynamic ecosystems. Seasonally flexible foraging behaviors warrant further study given their potential influence on food web dynamics in a range of fluctuating environments.