• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (5074679)   Today's Articles (206)
For: Dodds KG, McEwan JC, Brauning R, Anderson RM, van Stijn TC, Kristjánsson T, Clarke SM. Construction of relatedness matrices using genotyping-by-sequencing data. BMC Genomics 2015;16:1047. [PMID: 26654230 PMCID: PMC4675043 DOI: 10.1186/s12864-015-2252-3] [Citation(s) in RCA: 77] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2015] [Accepted: 11/27/2015] [Indexed: 01/27/2023]  Open
Number Cited by Other Article(s)
1
Bilton TP, Alemu SW, Dodds KG, Henry H, Hess MK, Jordan R, Booker F, Hickey SM, Amyes N, Knowler K, Sandoval E, Peers-Adams J, van Stijn TC, Baird H, Watson T, Bain W, Veenvliet B, Pile G, Bryson B, Clarke SM, Johnson PL, McEwan JC, Rowe SJ. Rumen metagenome profiles are heritable and rank the New Zealand national sheep flock for enteric methane emissions. Genet Sel Evol 2025;57:25. [PMID: 40426027 PMCID: PMC12117806 DOI: 10.1186/s12711-025-00973-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2024] [Accepted: 05/07/2025] [Indexed: 05/29/2025]  Open
2
Bilton TP, Hickey SM, Jonker A, McRae K, Hess MK, Perry BJ, Bryson B, Henry H, Bain W, Booker F, Veenvliet B, Peers-Adams J, Pile G, Waller E, Janssen PH, Tiplady KM, Reid P, Muetzel S, Agnew M, Dodds KG, McEwan JC, Rowe SJ. Milk fatty acids and rumen composition as proxy measures of enteric methane. J Dairy Sci 2025;108:5125-5144. [PMID: 40139349 DOI: 10.3168/jds.2024-25876] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2024] [Accepted: 02/12/2025] [Indexed: 03/29/2025]
3
Boocock J, Alexander N, Alamo Tapia L, Walter-McNeill L, Patel SP, Munugala C, Bloom JS, Kruglyak L. Single-cell eQTL mapping in yeast reveals a tradeoff between growth and reproduction. eLife 2025;13:RP95566. [PMID: 40073070 PMCID: PMC11903034 DOI: 10.7554/elife.95566] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/14/2025]  Open
4
Ehoche OG, Arojju SK, Jahufer MZZ, Jauregui R, Larking AC, Cousins G, Tate JA, Lockhart PJ, Griffiths AG. Genomic selection shows improved expected genetic gain over phenotypic selection of agronomic traits in allotetraploid white clover. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2025;138:34. [PMID: 39847157 PMCID: PMC11757872 DOI: 10.1007/s00122-025-04819-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/10/2024] [Accepted: 01/06/2025] [Indexed: 01/24/2025]
5
Boocock J, Alexander N, Tapia LA, Walter-McNeill L, Patel SP, Munugala C, Bloom JS, Kruglyak L. Single-cell eQTL mapping in yeast reveals a tradeoff between growth and reproduction. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.12.07.570640. [PMID: 38106186 PMCID: PMC10723400 DOI: 10.1101/2023.12.07.570640] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/19/2023]
6
Prescott LA, Scholtens MR, Walker SP, Clarke SM, Dodds KG, Miller MR, Semmens JM, Carter CG, Symonds JE. Genetic parameters and genotype-by-environment interaction estimates for growth and feed efficiency related traits in Chinook salmon, Oncorhynchus tshawytscha, reared under low and moderate flow regimes. Genet Sel Evol 2024;56:63. [PMID: 39266967 PMCID: PMC11396914 DOI: 10.1186/s12711-024-00929-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Accepted: 08/23/2024] [Indexed: 09/14/2024]  Open
7
Croft L, Matheson P, Butterworth NJ, McGaughran A. Fitness consequences of population bottlenecks in an invasive blowfly. Mol Ecol 2024;33:e17492. [PMID: 39136044 DOI: 10.1111/mec.17492] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2024] [Revised: 07/14/2024] [Accepted: 08/02/2024] [Indexed: 08/28/2024]
8
Wang X, Stein L, Black M, Kubenka K, Randall J, Ding C. Phenotypic diversity and population structure of Pecan (Carya illinoinensis) collections reveals geographic patterns. Sci Rep 2024;14:18592. [PMID: 39127859 PMCID: PMC11316781 DOI: 10.1038/s41598-024-69521-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 08/06/2024] [Indexed: 08/12/2024]  Open
9
Bond DM, Veale A, Alexander A, Hore TA. Coat colour in marsupials: genetic variants at the ASIP locus determine grey and black fur of the brushtail possum. ROYAL SOCIETY OPEN SCIENCE 2024;11:240806. [PMID: 39086822 PMCID: PMC11288674 DOI: 10.1098/rsos.240806] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/17/2024] [Revised: 07/05/2024] [Accepted: 07/05/2024] [Indexed: 08/02/2024]
10
Kardos M, Waples RS. Low-coverage sequencing and Wahlund effect severely bias estimates of inbreeding, heterozygosity and effective population size in North American wolves. Mol Ecol 2024:e17415. [PMID: 38785346 DOI: 10.1111/mec.17415] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Revised: 05/03/2024] [Accepted: 05/09/2024] [Indexed: 05/25/2024]
11
Moran IG, Loo YY, Louca S, Young NBA, Whibley A, Withers SJ, Salloum PM, Hall ML, Stanley MC, Cain KE. Vocal convergence and social proximity shape the calls of the most basal Passeriformes, New Zealand Wrens. Commun Biol 2024;7:575. [PMID: 38750083 PMCID: PMC11096322 DOI: 10.1038/s42003-024-06253-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Accepted: 04/26/2024] [Indexed: 05/18/2024]  Open
12
Bilton TP, Sharma SK, Schofield MR, Black MA, Jacobs JME, Bryan GJ, Dodds KG. Construction of relatedness matrices in autopolyploid populations using low-depth high-throughput sequencing data. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2024;137:64. [PMID: 38430392 PMCID: PMC10908621 DOI: 10.1007/s00122-024-04568-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Accepted: 01/30/2024] [Indexed: 03/03/2024]
13
Volkova NA, Romanov MN, Abdelmanova AS, Larionova PV, German NY, Vetokh AN, Shakhin AV, Volkova LA, Sermyagin AA, Anshakov DV, Fisinin VI, Griffin DK, Sölkner J, Brem G, McEwan JC, Brauning R, Zinovieva NA. Genome-Wide Association Study Revealed Putative SNPs and Candidate Genes Associated with Growth and Meat Traits in Japanese Quail. Genes (Basel) 2024;15:294. [PMID: 38540354 PMCID: PMC10970133 DOI: 10.3390/genes15030294] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 02/08/2024] [Accepted: 02/23/2024] [Indexed: 06/14/2024]  Open
14
Croft L, Matheson P, Flemming C, Butterworth NJ, McGaughran A. Population structure and interspecific hybridisation of two invasive blowflies (Diptera: Calliphoridae) following replicated incursions into New Zealand. Ecol Evol 2024;14:e10832. [PMID: 38192906 PMCID: PMC10772223 DOI: 10.1002/ece3.10832] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Accepted: 12/13/2023] [Indexed: 01/10/2024]  Open
15
McGuinness CF, Black MA, Dunbier AK. Restriction site associated DNA sequencing for tumour mutation burden estimation and mutation signature analysis. Cancer Med 2023;12:21545-21560. [PMID: 37974533 PMCID: PMC10726921 DOI: 10.1002/cam4.6711] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Revised: 11/05/2023] [Accepted: 11/06/2023] [Indexed: 11/19/2023]  Open
16
Volkova NA, Romanov MN, Abdelmanova AS, Larionova PV, German NY, Vetokh AN, Shakhin AV, Volkova LA, Anshakov DV, Fisinin VI, Narushin VG, Griffin DK, Sölkner J, Brem G, McEwan JC, Brauning R, Zinovieva NA. Genotyping-by-Sequencing Strategy for Integrating Genomic Structure, Diversity and Performance of Various Japanese Quail (Coturnix japonica) Breeds. Animals (Basel) 2023;13:3439. [PMID: 38003057 PMCID: PMC10668688 DOI: 10.3390/ani13223439] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Revised: 10/23/2023] [Accepted: 11/06/2023] [Indexed: 11/26/2023]  Open
17
Guhlin J, Le Lec MF, Wold J, Koot E, Winter D, Biggs PJ, Galla SJ, Urban L, Foster Y, Cox MP, Digby A, Uddstrom LR, Eason D, Vercoe D, Davis T, Howard JT, Jarvis ED, Robertson FE, Robertson BC, Gemmell NJ, Steeves TE, Santure AW, Dearden PK. Species-wide genomics of kākāpō provides tools to accelerate recovery. Nat Ecol Evol 2023;7:1693-1705. [PMID: 37640765 DOI: 10.1038/s41559-023-02165-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2022] [Accepted: 07/11/2023] [Indexed: 08/31/2023]
18
Hess MK, Hodgkinson HE, Hess AS, Zetouni L, Budel JCC, Henry H, Donaldson A, Bilton TP, van Stijn TC, Kirk MR, Dodds KG, Brauning R, McCulloch AF, Hickey SM, Johnson PL, Jonker A, Morton N, Hendy S, Oddy VH, Janssen PH, McEwan JC, Rowe SJ. Large-scale analysis of sheep rumen metagenome profiles captured by reduced representation sequencing reveals individual profiles are influenced by the environment and genetics of the host. BMC Genomics 2023;24:551. [PMID: 37723422 PMCID: PMC10506323 DOI: 10.1186/s12864-023-09660-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Accepted: 09/07/2023] [Indexed: 09/20/2023]  Open
19
Moravčíková N, Kasarda R, Židek R, McEwan JC, Brauning R, Landete-Castillejos T, Chonco L, Ciberej J, Pokorádi J. Traces of Human-Mediated Selection in the Gene Pool of Red Deer Populations. Animals (Basel) 2023;13:2525. [PMID: 37570333 PMCID: PMC10417186 DOI: 10.3390/ani13152525] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2023] [Revised: 07/27/2023] [Accepted: 07/30/2023] [Indexed: 08/13/2023]  Open
20
Herry F, Hérault F, Lecerf F, Lagoutte L, Doublet M, Picard-Druet D, Bardou P, Varenne A, Burlot T, Le Roy P, Allais S. Restriction site-associated DNA sequencing technologies as an alternative to low-density SNP chips for genomic selection: a simulation study in layer chickens. BMC Genomics 2023;24:271. [PMID: 37208589 DOI: 10.1186/s12864-023-09321-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Accepted: 04/18/2023] [Indexed: 05/21/2023]  Open
21
Digby A, Eason D, Catalina A, Lierz M, Galla S, Urban L, Le Lec MF, Guhlin J, Steeves TE, Dearden PK, Joustra T, Lees C, Davis T, Vercoe D, Kākāpō Recovery Team. Hidden impacts of conservation management on fertility of the critically endangered kākāpō. PeerJ 2023;11:e14675. [PMID: 36755872 PMCID: PMC9901309 DOI: 10.7717/peerj.14675] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2021] [Accepted: 12/11/2022] [Indexed: 02/05/2023]  Open
22
Bedhiaf-Romdhani S, Baazaoui I, Dodds KG, Brauning R, Anderson RM, Van Stijn TC, McCulloch AF, McEwan JC. Efficiency of genotyping by sequencing in inferring genomic relatedness and molecular insights into fat tail selection in Tunisian sheep. Anim Genet 2023;54:389-397. [PMID: 36727208 DOI: 10.1111/age.13296] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Revised: 12/14/2022] [Accepted: 01/12/2023] [Indexed: 02/03/2023]
23
Pearson SM, Griffiths AG, Maclean P, Larking AC, Hong SW, Jauregui R, Miller P, McKenzie CM, Lockhart PJ, Tate JA, Ford JL, Faville MJ. Outlier analyses and genome-wide association study identify glgC and ERD6-like 4 as candidate genes for foliar water-soluble carbohydrate accumulation in Trifolium repens. FRONTIERS IN PLANT SCIENCE 2023;13:1095359. [PMID: 36699852 PMCID: PMC9868827 DOI: 10.3389/fpls.2022.1095359] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Accepted: 12/09/2022] [Indexed: 06/17/2023]
24
Genetic diversity and population structure of wild and cultivated Crotalaria species based on genotyping-by-sequencing. PLoS One 2022;17:e0272955. [PMID: 36048841 PMCID: PMC9436042 DOI: 10.1371/journal.pone.0272955] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Accepted: 07/28/2022] [Indexed: 11/19/2022]  Open
25
Liu Q, Johnson LJ, Applegate ER, Arfmann K, Jauregui R, Larking A, Mace WJ, Maclean P, Walker T, Johnson RD. Identification of Genetic Diversity, Pyrrocidine-Producing Strains and Transmission Modes of Endophytic Sarocladium zeae Fungi from Zea Crops. Microorganisms 2022;10:microorganisms10071415. [PMID: 35889134 PMCID: PMC9316807 DOI: 10.3390/microorganisms10071415] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2022] [Revised: 07/12/2022] [Accepted: 07/12/2022] [Indexed: 12/10/2022]  Open
26
Heuchel A, Hall D, Zhao W, Gao J, Wennström U, Wang XR. Genetic diversity and background pollen contamination in Norway spruce and Scots pine seed orchard crops. FORESTRY RESEARCH 2022;2:8. [PMID: 39525423 PMCID: PMC11524256 DOI: 10.48130/fr-2022-0008] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/16/2022] [Accepted: 05/10/2022] [Indexed: 11/16/2024]
27
Miller AK, Timoshevskaya N, Smith JJ, Gillum J, Sharif S, Clarke S, Baker C, Kitson J, Gemmell NJ, Alexander A. Population genomics of New Zealand pouched lamprey (kanakana; piharau; Geotria australis). J Hered 2022;113:380-397. [PMID: 35439308 PMCID: PMC9308044 DOI: 10.1093/jhered/esac014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Accepted: 03/23/2022] [Indexed: 11/12/2022]  Open
28
Barre P, Asp T, Byrne S, Casler M, Faville M, Rognli OA, Roldan-Ruiz I, Skøt L, Ghesquière M. Genomic Prediction of Complex Traits in Forage Plants Species: Perennial Grasses Case. Methods Mol Biol 2022;2467:521-541. [PMID: 35451789 DOI: 10.1007/978-1-0716-2205-6_19] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
29
Caulton A, Dodds KG, McRae KM, Couldrey C, Horvath S, Clarke SM. Development of Epigenetic Clocks for Key Ruminant Species. Genes (Basel) 2021;13:96. [PMID: 35052436 PMCID: PMC8775075 DOI: 10.3390/genes13010096] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Revised: 12/20/2021] [Accepted: 12/22/2021] [Indexed: 01/08/2023]  Open
30
Semagn K, Iqbal M, Alachiotis N, N'Diaye A, Pozniak C, Spaner D. Genetic diversity and selective sweeps in historical and modern Canadian spring wheat cultivars using the 90K SNP array. Sci Rep 2021;11:23773. [PMID: 34893626 PMCID: PMC8664822 DOI: 10.1038/s41598-021-02666-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Accepted: 11/22/2021] [Indexed: 12/14/2022]  Open
31
Possamai T, Wiedemann-Merdinoglu S, Merdinoglu D, Migliaro D, De Mori G, Cipriani G, Velasco R, Testolin R. Construction of a high-density genetic map and detection of a major QTL of resistance to powdery mildew (Erysiphe necator Sch.) in Caucasian grapes (Vitis vinifera L.). BMC PLANT BIOLOGY 2021;21:528. [PMID: 34763660 PMCID: PMC8582213 DOI: 10.1186/s12870-021-03174-4] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Accepted: 08/09/2021] [Indexed: 05/30/2023]
32
Foster Y, Dutoit L, Grosser S, Dussex N, Foster BJ, Dodds KG, Brauning R, Van Stijn T, Robertson F, McEwan JC, Jacobs JME, Robertson BC. Genomic signatures of inbreeding in a critically endangered parrot, the kākāpō. G3 (BETHESDA, MD.) 2021;11:jkab307. [PMID: 34542587 PMCID: PMC8527487 DOI: 10.1093/g3journal/jkab307] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Accepted: 08/23/2021] [Indexed: 02/06/2023]
33
Undin M, Lockhart PJ, Hills SFK, Armstrong DP, Castro I. Mixed Mating in a Multi-Origin Population Suggests High Potential for Genetic Rescue in North Island Brown Kiwi, Apteryx mantelli. FRONTIERS IN CONSERVATION SCIENCE 2021. [DOI: 10.3389/fcosc.2021.702128] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
34
Macnee N, Hilario E, Tahir J, Currie A, Warren B, Rebstock R, Hallett IC, Chagné D, Schaffer RJ, Bulley SM. Peridermal fruit skin formation in Actinidia sp. (kiwifruit) is associated with genetic loci controlling russeting and cuticle formation. BMC PLANT BIOLOGY 2021;21:334. [PMID: 34261431 PMCID: PMC8278711 DOI: 10.1186/s12870-021-03025-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2020] [Accepted: 05/10/2021] [Indexed: 05/10/2023]
35
Genetic basis and identification of candidate genes for wooden breast and white striping in commercial broiler chickens. Sci Rep 2021;11:6785. [PMID: 33762630 PMCID: PMC7990949 DOI: 10.1038/s41598-021-86176-4] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Accepted: 03/08/2021] [Indexed: 02/07/2023]  Open
36
Pappas F, Palaiokostas C. Genotyping Strategies Using ddRAD Sequencing in Farmed Arctic Charr (Salvelinus alpinus). Animals (Basel) 2021;11:899. [PMID: 33801139 PMCID: PMC8004150 DOI: 10.3390/ani11030899] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Revised: 03/13/2021] [Accepted: 03/16/2021] [Indexed: 12/17/2022]  Open
37
Ben-David E, Boocock J, Guo L, Zdraljevic S, Bloom JS, Kruglyak L. Whole-organism eQTL mapping at cellular resolution with single-cell sequencing. eLife 2021;10:e65857. [PMID: 33734084 PMCID: PMC8062134 DOI: 10.7554/elife.65857] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Accepted: 03/17/2021] [Indexed: 12/11/2022]  Open
38
Zhao H, Li Y, Petkowski J, Kant S, Hayden MJ, Daetwyler HD. Genomic prediction and genomic heritability of grain yield and its related traits in a safflower genebank collection. THE PLANT GENOME 2021;14:e20064. [PMID: 33140563 DOI: 10.1002/tpg2.20064] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2020] [Revised: 09/11/2020] [Accepted: 09/13/2020] [Indexed: 05/28/2023]
39
Petersen GEL, Fennessy PF, Dearden PK. Management tools for genetic diversity in an isolated population of the honeybee (Apis mellifera) in New Zealand. ANIMAL PRODUCTION SCIENCE 2021. [DOI: 10.1071/an21102] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
40
Lamb HJ, Hayes BJ, Nguyen LT, Ross EM. The Future of Livestock Management: A Review of Real-Time Portable Sequencing Applied to Livestock. Genes (Basel) 2020;11:E1478. [PMID: 33317066 PMCID: PMC7763041 DOI: 10.3390/genes11121478] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Revised: 11/10/2020] [Accepted: 12/01/2020] [Indexed: 12/12/2022]  Open
41
de Bem Oliveira I, Amadeu RR, Ferrão LFV, Muñoz PR. Optimizing whole-genomic prediction for autotetraploid blueberry breeding. Heredity (Edinb) 2020;125:437-448. [PMID: 33077896 PMCID: PMC7784927 DOI: 10.1038/s41437-020-00357-x] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2020] [Revised: 08/11/2020] [Accepted: 08/11/2020] [Indexed: 11/19/2022]  Open
42
Tahir J, Brendolise C, Hoyte S, Lucas M, Thomson S, Hoeata K, McKenzie C, Wotton A, Funnell K, Morgan E, Hedderley D, Chagné D, Bourke PM, McCallum J, Gardiner SE, Gea L. QTL Mapping for Resistance to Cankers Induced by Pseudomonas syringae pv. actinidiae (Psa) in a Tetraploid Actinidia chinensis Kiwifruit Population. Pathogens 2020;9:E967. [PMID: 33233616 PMCID: PMC7709049 DOI: 10.3390/pathogens9110967] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2020] [Revised: 11/11/2020] [Accepted: 11/16/2020] [Indexed: 11/30/2022]  Open
43
Calleja-Rodriguez A, Pan J, Funda T, Chen Z, Baison J, Isik F, Abrahamsson S, Wu HX. Evaluation of the efficiency of genomic versus pedigree predictions for growth and wood quality traits in Scots pine. BMC Genomics 2020;21:796. [PMID: 33198692 PMCID: PMC7667760 DOI: 10.1186/s12864-020-07188-4] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2020] [Accepted: 10/26/2020] [Indexed: 02/08/2023]  Open
44
Development and validation of a RAD-Seq target-capture based genotyping assay for routine application in advanced black tiger shrimp (Penaeus monodon) breeding programs. BMC Genomics 2020;21:541. [PMID: 32758142 PMCID: PMC7430818 DOI: 10.1186/s12864-020-06960-w] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Accepted: 07/29/2020] [Indexed: 11/26/2022]  Open
45
Robust genome-wide ancestry inference for heterogeneous datasets: illustrated using the 1,000 genome project with 3D facial images. Sci Rep 2020;10:11850. [PMID: 32678112 PMCID: PMC7367291 DOI: 10.1038/s41598-020-68259-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2020] [Accepted: 06/19/2020] [Indexed: 11/17/2022]  Open
46
Genetic Diversity in Invasive Populations of Argentine Stem Weevil Associated with Adaptation to Biocontrol. INSECTS 2020;11:insects11070441. [PMID: 32674400 PMCID: PMC7411575 DOI: 10.3390/insects11070441] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/05/2020] [Revised: 06/21/2020] [Accepted: 07/04/2020] [Indexed: 12/19/2022]
47
Palaiokostas C, Clarke SM, Jeuthe H, Brauning R, Bilton TP, Dodds KG, McEwan JC, De Koning DJ. Application of Low Coverage Genotyping by Sequencing in Selectively Bred Arctic Charr (Salvelinus alpinus). G3 (BETHESDA, MD.) 2020;10:2069-2078. [PMID: 32312839 PMCID: PMC7263669 DOI: 10.1534/g3.120.401295] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/18/2020] [Accepted: 04/16/2020] [Indexed: 12/12/2022]
48
Sabahat S, Brauning R, Clarke SM, Nadeem A, Thomson PC, Khatkar MS. SNP discovery and population structure analysis in Lassi and Marecha camel breeds using a genotyping by sequencing method. Anim Genet 2020;51:620-623. [PMID: 32421863 DOI: 10.1111/age.12953] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2019] [Revised: 04/24/2020] [Accepted: 04/24/2020] [Indexed: 11/27/2022]
49
Galla SJ, Moraga R, Brown L, Cleland S, Hoeppner MP, Maloney RF, Richardson A, Slater L, Santure AW, Steeves TE. A comparison of pedigree, genetic and genomic estimates of relatedness for informing pairing decisions in two critically endangered birds: Implications for conservation breeding programmes worldwide. Evol Appl 2020;13:991-1008. [PMID: 32431748 PMCID: PMC7232769 DOI: 10.1111/eva.12916] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2019] [Revised: 12/27/2019] [Accepted: 01/02/2020] [Indexed: 12/18/2022]  Open
50
Dierickx EG, Sin SYW, van Veelen HPJ, Brooke MDL, Liu Y, Edwards SV, Martin SH. Genetic diversity, demographic history and neo-sex chromosomes in the Critically Endangered Raso lark. Proc Biol Sci 2020;287:20192613. [PMID: 32126957 PMCID: PMC7126062 DOI: 10.1098/rspb.2019.2613] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]  Open
PrevPage 1 of 2 12Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA