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Liu XS, Li H, Feng SJ, Yang ZM. A transposable element-derived siRNAs involve DNA hypermethylation at the promoter of OsGSTZ4 for cadmium tolerance in rice. Gene 2024; 892:147900. [PMID: 37839767 DOI: 10.1016/j.gene.2023.147900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 09/20/2023] [Accepted: 10/12/2023] [Indexed: 10/17/2023]
Abstract
Environmental contaminants such as cadmium (Cd) pose high risks to crop production and human health. The genetic basis for regulation of Cd stress-responsive genes for plant adaptation to adverse environments remains poorly understood. In this study, we characterized a rice Zeta family glutathione-S-transferase (OsGSTZ4) gene for Cd detoxification. Heterologous expression of OsGSTZ4 in a yeast (Saccharomyces cerevisiae) conferred cellular Cd tolerance. Transgenic rice overexpressing OsGSTZ4 improved plant growth, attenuated Cd-induced toxicity, and accumulated more Cd in roots. OsGSTZ4 transcription was rapidly induced 3 h after Cd exposure and then declined to the basal level. This was followed by (days after Cd treatment) by CHH hypermethylation (by 41.2 %) at a MITE (Miniature Inverted-repeat Transposable Element) transposable element (TE) inserted in the 5'-untranscribed region (UTR) (-1,722 ∼ -1,392 bp) of OsGSTZ4. Meanwhile, three 24-nt siRNAs derived from the TE (-1,722 ∼ -1,471 bp) were detected and was also rapidly enriched under Cd stress. To validate the possibility that Cd-induced change in OsGSTZ4 expression correlates with the siRNAs-involved CHH methylation through an RdDM (RNA-directed DNA methylation) pathway, genetic analyses were performed. We found that the CHH methylation at the promoter and transcript level of OsGSTZ4 were compromised in the osdrm2 (loss of function for CHH methylation) and osrdr2i (defective in RNA-dependent RNA polymerase 2) but did not change in other types of methyltransferases such as osmet1, ossdg714 or osros1. Promoter deletion analyses confirmed that the siRNA target sequences were essential for the proper expression of OsGSTZ4. Our studies reveal an unusual feedback mechanism by which the Cd-induced rapid OsGSTZ4 expression for Cd tolerance would interplay with the late CHH hypermethylation to silence the TE through the 24-nt siRNAs- and Osdrm2-mediated RdDM pathway, and help understand the diversity of gene regulation via an epigenetic mechanism for rice adaptation to the environmental stress.
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Affiliation(s)
- Xue Song Liu
- Department of Biochemistry and Molecular Biology, College of Life Science, Nanjing Agricultural University, Nanjing 210095, China; Institute of Agricultural Facilities and Equipment, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China
| | - He Li
- Department of Biochemistry and Molecular Biology, College of Life Science, Nanjing Agricultural University, Nanjing 210095, China
| | - Sheng Jun Feng
- Department of Biochemistry and Molecular Biology, College of Life Science, Nanjing Agricultural University, Nanjing 210095, China; The State Key Laboratory of Subtropical Silviculture, Laboratory of Plant Molecular and Developmental Biology, Zhejiang A&F University, Hangzhou 311300, China
| | - Zhi Min Yang
- Department of Biochemistry and Molecular Biology, College of Life Science, Nanjing Agricultural University, Nanjing 210095, China.
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Ni WJ, Mubeen S, Leng XM, He C, Yang Z. Molecular-Assisted Breeding of Cadmium Pollution-Safe Cultivars. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023. [PMID: 37923701 DOI: 10.1021/acs.jafc.3c04967] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2023]
Abstract
Cadmium (Cd) contamination in edible agricultural products, especially in crops intended for consumption, has raised worldwide concerns regarding food safety. Breeding of Cd pollution-safe cultivars (Cd-PSCs) is an effective solution to preventing the entry of Cd into the food chain from contaminated agricultural soil. Molecular-assisted breeding methods, based on molecular mechanisms for cultivar-dependent Cd accumulation and bioinformatic tools, have been developed to accelerate and facilitate the breeding of Cd-PSCs. This review summarizes the recent progress in the research of the low Cd accumulation traits of Cd-PSCs in different crops. Furthermore, the application of molecular-assisted breeding methods, including transgenic approaches, genome editing, marker-assisted selection, whole genome-wide association analysis, and transcriptome, has been highlighted to outline the breeding of Cd-PSCs by identifying critical genes and molecular biomarkers. This review provides a comprehensive overview of the development of Cd-PSCs and the potential future for breeding Cd-PSC using modern molecular technologies.
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Affiliation(s)
- Wen-Juan Ni
- School of Life Science, Sun Yat-sen University, Guangzhou 510275, China
- School of Basic Medicine, Gannan Medical University, Ganzhou 341000, China
| | - Samavia Mubeen
- School of Life Science, Sun Yat-sen University, Guangzhou 510275, China
| | - Xiao-Min Leng
- School of Basic Medicine, Gannan Medical University, Ganzhou 341000, China
| | - Chuntao He
- School of Life Science, Sun Yat-sen University, Guangzhou 510275, China
- School of Agriculture, Sun Yat-sen University, Guangzhou 510275, China
| | - Zhongyi Yang
- School of Life Science, Sun Yat-sen University, Guangzhou 510275, China
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El Rasafi T, Haouas A, Tallou A, Chakouri M, Aallam Y, El Moukhtari A, Hamamouch N, Hamdali H, Oukarroum A, Farissi M, Haddioui A. Recent progress on emerging technologies for trace elements-contaminated soil remediation. CHEMOSPHERE 2023; 341:140121. [PMID: 37690564 DOI: 10.1016/j.chemosphere.2023.140121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Revised: 08/16/2023] [Accepted: 09/07/2023] [Indexed: 09/12/2023]
Abstract
Abiotic stresses from potentially toxic elements (PTEs) have devastating impacts on health and survival of all living organisms, including humans, animals, plants, and microorganisms. Moreover, because of the rapid growing industrial activities together with the natural processes, soil contamination with PTEs has pronounced, which required an emergent intervention. In fact, several chemical and physical techniques have been employed to overcome the negative impacts of PTEs. However, these techniques have numerous drawback and their acceptance are usually poor as they are high cost, usually ineffectiveness and take longer time. In this context, bioremediation has emerged as a promising approach for reclaiming PTEs-contaminated soils through biological process using bacteria, fungus and plants solely or in combination. Here, we comprehensively reviews and critically discusses the processes by which microorganisms and hyperaccumulator plants extract, volatilize, stabilize or detoxify PTEs in soils. We also established a multi-technology repair strategy through the combination of different strategies, such as the application of biochar, compost, animal minure and stabilized digestate for stimulation of PTE remediation by hyperaccumulators plants species. The possible use of remote sensing of soil in conjunction with geographic information system (GIS) integration for improving soil bio-remediation of PTEs was discussed. By synergistically combining these innovative strategies, the present review will open very novel way for cleaning up PTEs-contaminated soils.
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Affiliation(s)
- Taoufik El Rasafi
- Health and Environment Laboratory, Faculty of Sciences Ain Chock, Hassan II University, Casablanca, B.P 5366, Maarif, Casablanca, Morocco.
| | - Ayoub Haouas
- Department of Physical and Chemical Sciences, University of L'Aquila, Via Vetoio, 67100, L'Aquila, Italy
| | - Anas Tallou
- Department of Soil, Plant and Food Sciences - University of Bari "Aldo Moro", Italy
| | - Mohcine Chakouri
- Team of Remote Sensing and GIS Applied to Geosciences and Environment, Department of Earth Sciences, Sultan Moulay Slimane University, Beni Mellal, Morocco
| | - Yassine Aallam
- Laboratory of Agro-Industrial and Medical Biotechnologies, Faculty of Science and Techniques, University of Sultan Moulay Slimane, Beni Mellal, Morocco; Mohammed VI Polytechnic (UM6P) University, Ben Guerir, Morocco
| | - Ahmed El Moukhtari
- Ecology and Environment Laboratory, Faculty of Sciences Ben Msik, Hassan II University, PO 7955, Sidi Othmane, Casablanca, Morocco
| | - Noureddine Hamamouch
- Faculty of Sciences Dhar El Mahraz, University Sidi Mohamed Ben Abdellah, Fes, Morocco
| | - Hanane Hamdali
- Laboratory of Agro-Industrial and Medical Biotechnologies, Faculty of Science and Techniques, University of Sultan Moulay Slimane, Beni Mellal, Morocco
| | | | - Mohamed Farissi
- Laboratory of Biotechnology and Sustainable Development of Natural Resources, Polydisciplinary Faculty, USMS, Beni Mellal, Morocco
| | - Abdelmajid Haddioui
- Laboratory of Agro-Industrial and Medical Biotechnologies, Faculty of Science and Techniques, University of Sultan Moulay Slimane, Beni Mellal, Morocco
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de Almeida NM, de Almeida AAF, de Almeida Santos N, Mora-Ocampo IY, Pirovani CP. Leaf proteomic profiles in cacao scion-rootstock combinations tolerant and intolerant to cadmium toxicity. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 203:107987. [PMID: 37722279 DOI: 10.1016/j.plaphy.2023.107987] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 08/22/2023] [Accepted: 08/23/2023] [Indexed: 09/20/2023]
Abstract
Cd contamination in cacao beans is one of the major problems faced by cocoa producing countries in Latin America. Cacao scion-rootstock combinations influence the Cd accumulation in the shoot of the plant. The objective of this work was to carry out a comparative analysis between cacao scion rootstock combinations (CCN 51/BN 34, CCN 51/PS 13.19, CCN 51/PH 16 and CCN 51/CCN 51), contrasting for tolerance to cadmium (Cd) toxicity, by means of leaf proteomic profiles, in order to elucidate molecular mechanisms involved in tolerance to Cd toxicity. Cacao scion-rootstock combinations were grown in soil with 150 mg Cd kg-1 soil, together with the control treatment. Leaf samples were collected 96 h after treatments were applied. There were alterations in the leaf proteome of the cacao scion-rootstock combinations, whose molecular responses to Cd toxicity varied depending on the combination. Leaf proteomic analyzes provided important information regarding the molecular mechanisms involved in the tolerance and intolerance of cacao scion-rootstock combinations to Cd toxicity. Enzymatic and non-enzymatic antioxidant systems, efficient for eliminating ROS, especially the expressions of APX and SOD, in addition to the increase in the abundance of metalloproteins, such as ferredoxins, rubredoxin, ALMT, Trx-1 and ABC-transporter were key mechanisms used in the Cd detoxification in cacao scion-rootstock combinations tolerant to Cd toxicity. Carboxylic acid metabolism, glucose activation and signal transduction were also important processes in the responses of cacao scion-rootstock combinations to Cd toxicity. The results confirmed CCN 51/BN 34 as a cacao scion-rootstock combination efficient in tolerance to Cd toxicity.
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Affiliation(s)
- Nicolle Moreira de Almeida
- Department of Biological Sciences, State University of Santa Cruz, Highway Jorge Amado, Km 16, 45662-900, Ilhéus, BA, Brazil.
| | - Alex-Alan Furtado de Almeida
- Department of Biological Sciences, State University of Santa Cruz, Highway Jorge Amado, Km 16, 45662-900, Ilhéus, BA, Brazil.
| | - Nayara de Almeida Santos
- Department of Biological Sciences, State University of Santa Cruz, Highway Jorge Amado, Km 16, 45662-900, Ilhéus, BA, Brazil.
| | - Irma Yuliana Mora-Ocampo
- Department of Biological Sciences, State University of Santa Cruz, Highway Jorge Amado, Km 16, 45662-900, Ilhéus, BA, Brazil.
| | - Carlos Priminho Pirovani
- Department of Biological Sciences, State University of Santa Cruz, Highway Jorge Amado, Km 16, 45662-900, Ilhéus, BA, Brazil.
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Zhang Z, Zhong L, Xiao W, Du Y, Han G, Yan Z, He D, Zheng C. Transcriptomics combined with physiological analysis reveals the mechanism of cadmium uptake and tolerance in Ligusticum chuanxiong Hort. under cadmium treatment. FRONTIERS IN PLANT SCIENCE 2023; 14:1263981. [PMID: 37810396 PMCID: PMC10556529 DOI: 10.3389/fpls.2023.1263981] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Accepted: 08/30/2023] [Indexed: 10/10/2023]
Abstract
Introduction Ligusticum chuanxiong Hort. is a widely used medicinal plant, but its growth and quality can be negatively affected by contamination with the heavy metal cadmium (Cd). Despite the importance of understanding how L. chuanxiong responds to Cd stress, but little is currently known about the underlying mechanisms. Methods To address this gap, we conducted physiological and transcriptomic analyses on L. chuanxiong plants treated with different concentrations of Cd2+ (0 mg·L-1, 5 mg·L-1, 10 mg·L-1, 20 mg·L-1, and 40 mg·L-1). Results Our findings revealed that Cd stress inhibited biomass accumulation and root development while activating the antioxidant system in L. chuanxiong. Root tissues were the primary accumulation site for Cd in this plant species, with Cd being predominantly distributed in the soluble fraction and cell wall. Transcriptomic analysis demonstrated the downregulation of differential genes involved in photosynthetic pathways under Cd stress. Conversely, the plant hormone signaling pathway and the antioxidant system exhibited positive responses to Cd regulation. Additionally, the expression of differential genes related to cell wall modification was upregulated, indicating potential enhancements in the root cell wall's ability to sequester Cd. Several differential genes associated with metal transport proteins were also affected by Cd stress, with ATPases, MSR2, and HAM3 playing significant roles in Cd passage from the apoplast to the cell membrane. Furthermore, ABC transport proteins were found to be key players in the intravesicular compartmentalization and efflux of Cd. Discussion In conclusion, our study provides preliminary insights into the mechanisms underlying Cd accumulation and tolerance in L. chuanxiong, leveraging both physiological and transcriptomic approaches. The decrease in photosynthetic capacity and the regulation of plant hormone levels appear to be major factors contributing to growth inhibition in response to Cd stress. Moreover, the upregulation of differential genes involved in cell wall modification suggests a potential mechanism for enhancing root cell wall capabilities in isolating and sequestering Cd. The involvement of specific metal transport proteins further highlights their importance in Cd movement within the plant.
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Affiliation(s)
- Zhanling Zhang
- School of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China
- State Key Laboratory of Characteristic Chinese Medicine Resources in Southwest China, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China
| | - Lele Zhong
- Evaluation and Utilization of Strategic Rare Metals and Rare Earth Resource Key Laboratory of Sichuan Province, Chengdu, Sichuan, China
- Chengdu Analytical & Testing Center, Sichuan Bureau of Geology & Mineral Resources, Chengdu, Sichuan, China
| | - Wanting Xiao
- School of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China
- State Key Laboratory of Characteristic Chinese Medicine Resources in Southwest China, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China
| | - Yaping Du
- School of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China
- State Key Laboratory of Characteristic Chinese Medicine Resources in Southwest China, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China
| | - Guiqi Han
- School of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China
- State Key Laboratory of Characteristic Chinese Medicine Resources in Southwest China, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China
- College of Medical Technology, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China
| | - Zhuyun Yan
- School of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China
- State Key Laboratory of Characteristic Chinese Medicine Resources in Southwest China, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China
| | - Dongmei He
- School of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China
- State Key Laboratory of Characteristic Chinese Medicine Resources in Southwest China, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China
| | - Chuan Zheng
- School of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China
- State Key Laboratory of Characteristic Chinese Medicine Resources in Southwest China, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China
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Yu J, Zhang J, Hong H. Characterization and Expression Analysis of Four Cadmium-Tolerance-Associated Genes of Avicennia marina (Forsk.). BIOLOGY 2023; 12:biology12020216. [PMID: 36829494 PMCID: PMC9952839 DOI: 10.3390/biology12020216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Revised: 12/31/2022] [Accepted: 01/09/2023] [Indexed: 01/31/2023]
Abstract
Mangroves colonize the intertidal area of estuaries (e.g., Pichavaram, Payardia, and Mai Po) with remarkable cadmium (Cd) pollution. A study on the mechanism of mangrove plant response to Cd pollution can help to understand the adaptive characteristics of plants under Cd stress. This study explored the roles of peroxidase (PRX), pectate lyase (PL), and phytosulfokine (PSK) genes in cadmium tolerance of mangrove Avicennia marina. Full-length sequences of four genes (i.e., AmPRX1, AmPRX2, AmPL, and AmPSK) associated with metal tolerance were identified with suppression subtractive hybridization and rapid amplification of cDNA ends. These genes showed the characteristic features of the respective protein family, indicating functions similar to other plant proteins. Real-time quantitative PCR analysis demonstrated that cadmium exposure resulted in differences in expression patterns among the tissues. Our findings emphasize the complex regulatory mechanism of these four genes in response to trace metal pollution and reveal their functions in metabolic signaling during the stress response.
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Affiliation(s)
- Jinfeng Yu
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, School of Life Sciences, Xiamen University, Xiamen 361102, China
- Xiamen Innovax Biotech, Xiamen 361022, China
| | - Jicheng Zhang
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, School of Life Sciences, Xiamen University, Xiamen 361102, China
- Frasergen, Wuhan 430075, China
| | - Hualong Hong
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, School of Life Sciences, Xiamen University, Xiamen 361102, China
- Correspondence:
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Kebert M, Kostić S, Vuksanović V, Gavranović Markić A, Kiprovski B, Zorić M, Orlović S. Metal- and Organ-Specific Response to Heavy Metal-Induced Stress Mediated by Antioxidant Enzymes' Activities, Polyamines, and Plant Hormones Levels in Populus deltoides. PLANTS (BASEL, SWITZERLAND) 2022; 11:3246. [PMID: 36501286 PMCID: PMC9741192 DOI: 10.3390/plants11233246] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Revised: 11/20/2022] [Accepted: 11/22/2022] [Indexed: 06/17/2023]
Abstract
Besides anthropogenic factors, climate change causes altered precipitation patterns that indirectly affect the increase of heavy metals in soils due to hydrological effects and enhanced leaching (i.e., Cd and Ni), especially in the vicinity of mines and smelters. Phytoextraction is a well-known, powerful "green" technique for environmental clean-up that uses plants to extract, sequester, and/or detoxify heavy metals, and it makes significant contributions to the removal of persistent inorganic pollutants from soils. Poplar species, due to their growth features, high transpiration rate, large biomass, and feasible reproduction represent great candidates for phytoextraction technology. However, the consequences of concomitant oxidative stress upon plant metabolism and the mechanism of the poplar's tolerance to heavy metal-induced stress are still not completely understood. In this study, cuttings of poplar species (Populus deltoides W. Bartram ex Marshall) were separately exposed to two heavy metals (Cd2+ and Ni2+) that were triple the maximum allowed amount (MAA) (according to national legislation). The aim of the study was to estimate the effects of heavy metals on: (I) the accumulation of free and conjugated polyamines, (II) plant hormones (including abscisic acid-ABA and indole-3-acetic acid-IAA), and (III) the activities of different antioxidant enzymes at root and leaf levels. By using the selected ion monitoring (SIM) mode of gas chromatography with mass spectrometry (GC/MS) coupled with the isotopically labeled technique, amounts of ABA and IAA were quantified, while polyamine amounts were determined by using high-performance liquid chromatography (HPLC) with fluorometric detection after derivatization. The results showed that P. deltoides responded to elevated concentrations of heavy metals in soils by exhibiting metal- and organ-specific tolerance. Knowledge about tolerance mechanisms is of great importance for the development of phytoremediation technology and afforestation programs for polluted soils.
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Affiliation(s)
- Marko Kebert
- Institute of Lowland Forestry and Environment, University of Novi Sad, Antona Čehova 13d, 21000 Novi Sad, Serbia
| | - Saša Kostić
- Institute of Lowland Forestry and Environment, University of Novi Sad, Antona Čehova 13d, 21000 Novi Sad, Serbia
| | - Vanja Vuksanović
- Faculty of Agriculture, University of Novi Sad, Trg Dositeja Obradovića 8, 21000 Novi Sad, Serbia
| | - Anđelina Gavranović Markić
- Division for Genetics, Forest Tree Breeding and Seed Science, Croatian Forest Research Institute, Cvjetno Naselje 41, HR-10450 Jastrebarsko, Croatia
| | - Biljana Kiprovski
- Institute of Field and Vegetable Crops, National Institute of the Republic of Serbia, Maksima Gorkog 30, 21000 Novi Sad, Serbia
| | - Martina Zorić
- Institute of Lowland Forestry and Environment, University of Novi Sad, Antona Čehova 13d, 21000 Novi Sad, Serbia
| | - Saša Orlović
- Institute of Lowland Forestry and Environment, University of Novi Sad, Antona Čehova 13d, 21000 Novi Sad, Serbia
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Liu J, Fu P, Wang L, Lin X, Enayatizamir N. A fungus ( Trametes pubescens) resists cadmium toxicity by rewiring nitrogen metabolism and enhancing energy metabolism. Front Microbiol 2022; 13:1040579. [PMID: 36504813 PMCID: PMC9733723 DOI: 10.3389/fmicb.2022.1040579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Accepted: 10/26/2022] [Indexed: 11/22/2022] Open
Abstract
As a primary goal, cadmium (Cd) is a heavy metal pollutant that is readily adsorbed and retained in rice, and it becomes a serious threat to food safety and human health. Fungi have attracted interest for their ability to remove heavy metals from the environment, although the underlying mechanisms of how fungi defend against Cd toxicity are still unclear. In this study, a Cd-resistant fungus Trametes pubescens (T. pubescens) was investigated. Pot experiments of rice seedlings colonized with T. pubescens showed that their coculture could significantly enhance rice seedling growth and reduce Cd accumulation in rice tissues. Furthermore, integrated transcriptomic and metabolomic analyses were used to explore how T. pubescens would reprogram its metabolic network against reactive oxygen species (ROS) caused by Cd toxicity. Based on multi-omic data mining results, we postulated that under Cd stress, T. pubescens was able to upregulate both the mitogen-activated protein kinase (MAPK) and phosphatidylinositol signaling pathways, which enhanced the nitrogen flow from amino acids metabolism through glutaminolysis to α-ketoglutarate (α-KG), one of the entering points of tricarboxylic acid (TCA) cycle within mitochondria; it thus increased the production of energy equivalents, adenosine triphosphate (ATP) and reduced nicotinamide adenine dinucleotide phosphate (NADPH) for T. pubescens to resist oxidative damage. This study can enable a better understanding of the metabolic rewiring of T. pubescens under Cd stress, and it can also provide a promising potential to prevent the rice paddy fields from Cd toxicity and enhance food safety.
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Affiliation(s)
- Jing Liu
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, China,School of Food Science and Engineering, Hainan University, Haikou, China
| | - Pengcheng Fu
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, China,*Correspondence: Pengcheng Fu,
| | - Li Wang
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, China
| | - Xiuying Lin
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, China
| | - Naeimeh Enayatizamir
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, China,Department of Soil Science, Faculty of Agriculture, Shahid Chamran University of Ahvaz, Ahvaz, Iran
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Shen C, Huang YY, Xin JL, He CT, Yang ZY. A novel microRNA IamiR-4-3p from water spinach (Ipomoea aquatica Forsk.) increased Cd uptake and translocation in Arabidopsis thaliana. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:41375-41385. [PMID: 35089521 DOI: 10.1007/s11356-022-18875-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2021] [Accepted: 01/21/2022] [Indexed: 06/14/2023]
Abstract
MicroRNAs (miRNAs) play important roles in plant response to Cd stress. In our previous study, we observed significant differences in the expression levels of IamiR-4-3p between high-Cd and low-Cd cultivars of water spinach. The function of IamiR-4-3p was investigated by using wild type Arabidopsis (WT), Arabidopsis transfected with empty vector pCambia1302 (CK), and Arabidopsis transfected with IamiR-4-3p + vector pCambia1302 (p35S::miR-4-3p) in this study. In p35S::miR-4-3p Arabidopsis, the expression levels of GST3 and AWPM19-like were reduced by 20% and 24%. Under Cd treatment, higher root and shoot Cd concentrations were detected in the transgenic p35S::miR-4-3p Arabidopsis. MDA and H2O2 concentrations were positively correlated with the Cd concentrations in all Arabidopsis. The elevated GSH pool in p35S::miR-4-3p Arabidopsis should compensate for its restricted GST3 expression in response to Cd-induced oxidative stress. Lower F1 (cell wall) and higher F2 (organelle) and F3 (soluble fraction) Cd concentrations were observed along with the reduced ABA level in p35S::miR-4-3p Arabidopsis, which could induce a weakened apoplastic barrier and higher Cd accumulation and translocation in roots. It is suggested that IamiR-4-3p is able to reduce the expression levels of GST3 and AWPM19-like, resulting in higher Cd uptake and translocation in Arabidopsis.
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Affiliation(s)
- Chuang Shen
- Research Center for Environmental Pollution Control Technology, School of Safety and Environmental Engineering, Hunan Institute of Technology, Hengyang, 421002, China
| | - Ying-Ying Huang
- Research Center for Environmental Pollution Control Technology, School of Safety and Environmental Engineering, Hunan Institute of Technology, Hengyang, 421002, China
| | - Jun-Liang Xin
- Research Center for Environmental Pollution Control Technology, School of Safety and Environmental Engineering, Hunan Institute of Technology, Hengyang, 421002, China
| | - Chun-Tao He
- State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-Sen University, Xingang Xi Road 135, Guangzhou, 510275, China.
| | - Zhong-Yi Yang
- State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-Sen University, Xingang Xi Road 135, Guangzhou, 510275, China.
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10
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Rahi AA, Younis U, Ahmed N, Ali MA, Fahad S, Sultan H, Zarei T, Danish S, Taban S, El Enshasy HA, Tamunaidu P, Alotaibi JM, Alharbi SA, Datta R. Toxicity of Cadmium and nickel in the context of applied activated carbon biochar for improvement in soil fertility. Saudi J Biol Sci 2022; 29:743-750. [PMID: 35197740 PMCID: PMC8847926 DOI: 10.1016/j.sjbs.2021.09.035] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2021] [Revised: 09/11/2021] [Accepted: 09/13/2021] [Indexed: 12/28/2022] Open
Abstract
Toxicity induced by heavy metals deteriorates soil fertility status. It also adversely affects the growth and yield of crops. These heavy metals become part of the food chain when crops are cultivated in areas where heavy metals are beyond threshold limits. Cadmium (Cd) and nickel (Ni) are considered the most notorious ones among different heavy metals. The high water solubility of Cd made it a potential toxin for plants and their consumers. Accumulation of Ni in plants, leaves, and fruits also deteriorates their quality and causes cancer in humans when such a Ni-contaminated diet is used regularly. Both Cd and Ni also compete with essential nutrients of plants, making the fertility status of soil poor. To overcome this problem, the use of activated carbon biochar can play a milestone role. In the recent past application of activated carbon biochar is gaining more and more attention. Biochar sorb the Cd and Ni and releases essential micronutrients that are part of its structure. Many micropores and high cation exchange capacity make it the most acceptable organic amendment to improve soil fertility and immobilize Cd and Ni. In addition to improving water and nutrients, soil better microbial proliferation enhances the soil rhizosphere ecosystem and nutrient cycling. This review has covered Cd and Ni harmful effects on crop yield and their immobilization by activated carbon biochar. The focus was made to elaborate on the positive effects of biochar on crop yield and soil health.
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Affiliation(s)
- Ashfaq Ahmad Rahi
- Pesticide Quality Control Laboratory, Multan, 60000 Punjab, Pakistan
| | - Uzma Younis
- Department of Botany, University of Central Punjab, Punjab, Pakistan
| | - Niaz Ahmed
- Department of Soil Science, Faculty of Agricultural Sciences and Technology, Bahauddin Zakariya University, Multan 60800, Punjab Pakistan
| | - Muhammad Arif Ali
- Department of Soil Science, Faculty of Agricultural Sciences and Technology, Bahauddin Zakariya University, Multan 60800, Punjab Pakistan
| | - Shah Fahad
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresource, College of Tropical Crops, Hainan University, Haikou 570228, China.,Department of Agronomy, The University of Haripur, Haripur 22620, Pakistan
| | - Haider Sultan
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresource, College of Tropical Crops, Hainan University, Haikou 570228, China
| | - Tayebeh Zarei
- Laboratory of Tropical and Mediterranean Symbioses, CIRAD, Montpellier, France
| | - Subhan Danish
- Department of Soil Science, Faculty of Agricultural Sciences and Technology, Bahauddin Zakariya University, Multan 60800, Punjab Pakistan.,Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresource, College of Tropical Crops, Hainan University, Haikou 570228, China
| | - Süleyman Taban
- Department of Soil Science and Plant Nutrition, Faculty of Agriculture, Ankara University, 06110 Ankara, Turkey
| | - Hesham Ali El Enshasy
- Institute of Bioproduct Development (IBD), Universiti Teknologi Malaysia (UTM), Skudai, Johor Bahru, Johor, Malaysia.,School of Chemical and Energy Engineering, Faculty of Engineering, Universiti Teknologi Malaysia (UTM), Skudai, Johor Bahru, Johor, Malaysia.,City of Scientific Research and Technology Applications (SRTA), New Burg Al-Arab, Alexandria, Egypt
| | - Pramila Tamunaidu
- Malaysia-Japan Advanced Research Centre (MJARC), Malaysia-Japan International Institute of Technology, Universiti Teknologi Malaysia (UTM), 84600 Pagoh, Johor, Malaysia
| | - Jamal M Alotaibi
- Department of agricultural Extension and Rural society, College of food sciences and agriculture, King Saud University Riyadh, PO Box 2460, 11451, Saudi Arabia
| | - Sulaiman Ali Alharbi
- Department of Botany and Microbiology, College of Science, King Saud University, PO Box -2455, Riyadh 11451, Saudi Arabia
| | - Rahul Datta
- Department of Geology and Pedology, Faculty of Forestry and Wood Technology, Mendel University in Brno, Zemedelska 3, 61300 Brno, Czech Republic
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11
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Olowe OM, Nicola L, Asemoloye MD, Akanmu AO, Babalola OO. Trichoderma: Potential bio-resource for the management of tomato root rot diseases in Africa. Microbiol Res 2022; 257:126978. [DOI: 10.1016/j.micres.2022.126978] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Revised: 01/24/2022] [Accepted: 01/28/2022] [Indexed: 12/27/2022]
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12
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Al-Saari N, Azmi NSA, Samsulrizal NH. Trichoderma Genes for Abiotic Stress Tolerance in Plants. Fungal Biol 2022. [DOI: 10.1007/978-3-030-91650-3_13] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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13
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Feki K, Tounsi S, Mrabet M, Mhadhbi H, Brini F. Recent advances in physiological and molecular mechanisms of heavy metal accumulation in plants. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:64967-64986. [PMID: 34599711 DOI: 10.1007/s11356-021-16805-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Accepted: 09/24/2021] [Indexed: 05/27/2023]
Abstract
Among abiotic stress, the toxicity of metals impacts negatively on plants' growth and productivity. This toxicity promotes various perturbations in plants at different levels. To withstand stress, plants involve efficient mechanisms through the implication of various signaling pathways. These pathways enhance the expression of many target genes among them gene coding for metal transporters. Various metal transporters which are localized at the plasma membrane and/or at the tonoplast are crucial in metal stress response. Furthermore, metal detoxification is provided by metal-binding proteins like phytochelatins and metallothioneins. The understanding of the molecular basis of metal toxicities signaling pathways and tolerance mechanisms is crucial for genetic engineering to produce transgenic plants that enhance phytoremediation. This review presents an overview of the recent advances in our understanding of metal stress response. Firstly, we described the effect of metal stress on plants. Then, we highlight the mechanisms involved in metal detoxification and the importance of the regulation in the response to heavy metal stress. Finally, we mentioned the importance of genetic engineering for enhancing the phytoremediation technique. In the end, the response to heavy metal stress is complex and implicates various components. Thus, further studies are needed to better understand the mechanisms involved in response to this abiotic stress.
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Affiliation(s)
- Kaouthar Feki
- Laboratory of Legumes and Sustainable Agrosystem (L2AD), Center of Biotechnology of Borj-Cédria, BP901, 2050, Hammam-Lif, Tunisia
| | - Sana Tounsi
- Biotechnology and Plant Improvement Laboratory, Center of Biotechnology of Sfax (CBS), University of Sfax, B.P "1177", 3018, Sfax, Tunisia
| | - Moncef Mrabet
- Laboratory of Legumes and Sustainable Agrosystem (L2AD), Center of Biotechnology of Borj-Cédria, BP901, 2050, Hammam-Lif, Tunisia
| | - Haythem Mhadhbi
- Laboratory of Legumes and Sustainable Agrosystem (L2AD), Center of Biotechnology of Borj-Cédria, BP901, 2050, Hammam-Lif, Tunisia
| | - Faiçal Brini
- Biotechnology and Plant Improvement Laboratory, Center of Biotechnology of Sfax (CBS), University of Sfax, B.P "1177", 3018, Sfax, Tunisia.
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14
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Poosapati S, Ravulapalli PD, Viswanathaswamy DK, Kannan M. Proteomics of Two Thermotolerant Isolates of Trichoderma under High-Temperature Stress. J Fungi (Basel) 2021; 7:1002. [PMID: 34946985 PMCID: PMC8704589 DOI: 10.3390/jof7121002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2021] [Revised: 11/22/2021] [Accepted: 11/22/2021] [Indexed: 11/22/2022] Open
Abstract
Several species of the soil borne fungus of the genus Trichoderma are known to be versatile, opportunistic plant symbionts and are the most successful biocontrol agents used in today's agriculture. To be successful in field conditions, the fungus must endure varying climatic conditions. Studies have indicated that a high atmospheric temperature coupled with low humidity is a major factor in the inconsistent performance of Trichoderma under field conditions. Understanding the molecular modulations associated with Trichoderma that persist and deliver under abiotic stress conditions will aid in exploiting the value of these organisms for such uses. In this study, a comparative proteomic analysis, using two-dimensional gel electrophoresis (2DE) and matrix-assisted laser desorption/time-of-flight (MALDI-TOF-TOF) mass spectrometry, was used to identify proteins associated with thermotolerance in two thermotolerant isolates of Trichoderma: T. longibrachiatum 673, TaDOR673 and T. asperellum 7316, TaDOR7316; with 32 differentially expressed proteins being identified. Sequence homology and conserved domains were used to identify these proteins and to assign a probable function to them. The thermotolerant isolate, TaDOR673, seemed to employ the stress signaling MAPK pathways and heat shock response pathways to combat the stress condition, whereas the moderately tolerant isolate, TaDOR7316, seemed to adapt to high-temperature conditions by reducing the accumulation of misfolded proteins through an unfolded protein response pathway and autophagy. In addition, there were unique, as well as common, proteins that were differentially expressed in the two isolates studied.
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Affiliation(s)
- Sowmya Poosapati
- Department of Plant Pathology, ICAR-Indian Institute of Oilseeds Research, Rajendranagar, Hyderabad 500030, India;
- Section of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093, USA
| | - Prasad Durga Ravulapalli
- Department of Plant Pathology, ICAR-Indian Institute of Oilseeds Research, Rajendranagar, Hyderabad 500030, India;
| | | | - Monica Kannan
- Proteomics Facility, School of Life Sciences, University of Hyderabad, Gachibowli, Hyderabad 500046, India;
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15
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Mahmoud A, AbdElgawad H, Hamed BA, Beemster GT, El-Shafey NM. Differences in Cadmium Accumulation, Detoxification and Antioxidant Defenses between Contrasting Maize Cultivars Implicate a Role of Superoxide Dismutase in Cd Tolerance. Antioxidants (Basel) 2021; 10:1812. [PMID: 34829683 PMCID: PMC8614887 DOI: 10.3390/antiox10111812] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2021] [Revised: 11/05/2021] [Accepted: 11/08/2021] [Indexed: 01/01/2023] Open
Abstract
Cadmium (Cd), a readily absorbed and translocated toxic heavy metal, inhibits plant growth, interrupts metabolic homeostasis and induces oxidative damage. Responses towards Cd-stress differ among plant cultivars, and the complex integrated relationships between Cd accumulation, detoxification mechanisms and antioxidant defenses still need to be unraveled. To this end, 12 Egyptian maize cultivars were grown under Cd-stress to test their Cd-stress tolerance. Out of these cultivars, tolerant (TWC360 and TWC321), moderately sensitive (TWC324) and sensitive (SC128) cultivars were selected, and we determined their response to Cd in terms of biomass, Cd accumulation and antioxidant defense system. The reduction in biomass was highly obvious in sensitive cultivars, while TWC360 and TWC321 showed high Cd-tolerance. The cultivar TWC321 showed lower Cd uptake concurrently with an enhanced antioxidant defense system. Interestingly, TWC360 accumulated more Cd in the shoot, accompanied with increased Cd detoxification and sequestration. A principal component analysis revealed a clear separation between the sensitive and tolerant cultivars with significance of the antioxidant defenses, including superoxide dismutase (SOD). To confirm the involvement of SOD in Cd-tolerance, we studied the effect of Cd-stress on a transgenic maize line (TG) constitutively overexpressing AtFeSOD gene in comparison to its wild type (WT). Compared to their WT, the TG plants showed less Cd accumulation and improved growth, physiology, antioxidant and detoxification systems. These results demonstrate the role of SOD in determining Cd-tolerance.
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Affiliation(s)
- Aya Mahmoud
- Department of Botany and Microbiology, Faculty of Science, Beni-Suef University, Beni-Suef 62511, Egypt; (A.M.); (H.A.); (B.A.H.)
| | - Hamada AbdElgawad
- Department of Botany and Microbiology, Faculty of Science, Beni-Suef University, Beni-Suef 62511, Egypt; (A.M.); (H.A.); (B.A.H.)
| | - Badreldin A. Hamed
- Department of Botany and Microbiology, Faculty of Science, Beni-Suef University, Beni-Suef 62511, Egypt; (A.M.); (H.A.); (B.A.H.)
| | - Gerrit T.S. Beemster
- Integrated Molecular Plant Physiology Research (IMPRES), Department of Biology, University of Antwerp, 2020 Antwerp, Belgium;
| | - Nadia M. El-Shafey
- Department of Botany and Microbiology, Faculty of Science, Beni-Suef University, Beni-Suef 62511, Egypt; (A.M.); (H.A.); (B.A.H.)
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16
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Murali M, Naziya B, Ansari MA, Alomary MN, AlYahya S, Almatroudi A, Thriveni MC, Gowtham HG, Singh SB, Aiyaz M, Kalegowda N, Lakshmidevi N, Amruthesh KN. Bioprospecting of Rhizosphere-Resident Fungi: Their Role and Importance in Sustainable Agriculture. J Fungi (Basel) 2021; 7:314. [PMID: 33919629 PMCID: PMC8072672 DOI: 10.3390/jof7040314] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2021] [Revised: 04/09/2021] [Accepted: 04/14/2021] [Indexed: 01/28/2023] Open
Abstract
Rhizosphere-resident fungi that are helpful to plants are generally termed as 'plant growth promoting fungi' (PGPF). These fungi are one of the chief sources of the biotic inducers known to give their host plants numerous advantages, and they play a vital role in sustainable agriculture. Today's biggest challenge is to satisfy the rising demand for crop protection and crop yield without harming the natural ecosystem. Nowadays, PGPF has become an eco-friendly way to improve crop yield by enhancing seed germination, shoot and root growth, chlorophyll production, and fruit yield, etc., either directly or indirectly. The mode of action of these PGPF includes the solubilization and mineralization of the essential micro- and macronutrients needed by plants to regulate the balance for various plant processes. PGPF produce defense-related enzymes, defensive/volatile compounds, and phytohormones that control pathogenic microbes' growth, thereby assisting the plants in facing various biotic and abiotic stresses. Therefore, this review presents a holistic view of PGPF as efficient natural biofertilizers to improve crop plants' growth and resistance.
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Affiliation(s)
- Mahadevamurthy Murali
- Applied Plant Pathology Laboratory, Department of Studies in Botany, University of Mysore, Manasagangotri, Mysuru 570006, Karnataka, India; (M.M.); (B.N.); (N.K.)
| | - Banu Naziya
- Applied Plant Pathology Laboratory, Department of Studies in Botany, University of Mysore, Manasagangotri, Mysuru 570006, Karnataka, India; (M.M.); (B.N.); (N.K.)
| | - Mohammad Azam Ansari
- Department of Epidemic Disease Research, Institutes for Research and Medical Consultations (IRMC), Imam Abdulrahman Bin Faisal University, Dammam 31441, Saudi Arabia;
| | - Mohammad N. Alomary
- National Center for Biotechnology, Life Science and Environmental Research Institute, King Abdulaziz City for Science and Technology, Riyadh P.O. Box 6086, Saudi Arabia; (M.N.A.); (S.A.)
| | - Sami AlYahya
- National Center for Biotechnology, Life Science and Environmental Research Institute, King Abdulaziz City for Science and Technology, Riyadh P.O. Box 6086, Saudi Arabia; (M.N.A.); (S.A.)
| | - Ahmad Almatroudi
- Department of Medical Laboratories, College of Applied Medical Sciences, Qassim University, Qassim 51431, Saudi Arabia
| | - M. C. Thriveni
- Central Sericultural Germplasm Resources Centre, Central Silk Board, Ministry of Textiles, Thally Road, TVS Nagar, Hosur 635109, Tamil Nadu, India;
| | | | - Sudarshana Brijesh Singh
- Department of Studies in Biotechnology, University of Mysore, Manasagangotri, Mysuru 570006, Karnataka, India; (H.G.G.); (S.B.S.); (M.A.)
| | - Mohammed Aiyaz
- Department of Studies in Biotechnology, University of Mysore, Manasagangotri, Mysuru 570006, Karnataka, India; (H.G.G.); (S.B.S.); (M.A.)
| | - Nataraj Kalegowda
- Applied Plant Pathology Laboratory, Department of Studies in Botany, University of Mysore, Manasagangotri, Mysuru 570006, Karnataka, India; (M.M.); (B.N.); (N.K.)
| | - Nanjaiah Lakshmidevi
- Department of Studies in Microbiology, University of Mysore, Manasagangotri, Mysuru 570006, Karnataka, India;
| | - Kestur Nagaraj Amruthesh
- Applied Plant Pathology Laboratory, Department of Studies in Botany, University of Mysore, Manasagangotri, Mysuru 570006, Karnataka, India; (M.M.); (B.N.); (N.K.)
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17
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Enhanced Cadmium Accumulation and Tolerance in Transgenic Hairy Roots of Solanum nigrum L. Expressing Iron-Regulated Transporter Gene IRT1. Life (Basel) 2020; 10:life10120324. [PMID: 33287205 PMCID: PMC7761695 DOI: 10.3390/life10120324] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2020] [Revised: 11/26/2020] [Accepted: 12/01/2020] [Indexed: 02/07/2023] Open
Abstract
Solanum nigrum L., a hyperaccumulator of cadmium (Cd), is regarded as a promising candidate for phytoremediation of heavy metal pollution. In the present study, the hairy roots of Solanum nigrum L. were selected as a model plant system to study the potential application of Iron-regulated Transporter Gene (IRT1) for the efficient phytoremediation of Cd pollution. The transgenic hairy roots of Solanum nigrum L. expressing the IRT1 gene from Arabidopsis thaliana were successfully obtained via the Agrobacterium tumegaciens-mediated method. Expression of IRT1 reduced Cd stress-induced phytotoxic effects. Significantly superior root growth, increased antioxidant enzyme activities, decreased reactive oxygen species (ROS) levels, and less cell apoptosis were observed in the transgenic hairy roots of Solanum nigrum L. compared to the wild-type lines under Cd stress. Enhanced Cd accumulation was also carried out in the transgenic hairy roots compared to the control (886.8 μg/g vs. 745.0 μg/g). These results provide an important understanding of the Cd tolerance mechanism of transgenic IRT1 hairy roots of Solanum nigrum L., and are of particular importance to the development of a transgenic candidate for efficient phytoremediation process.
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18
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Yu H, Li Q, Shen X, Zhang L, Liu J, Tan Q, Li Y, Lv B, Shang X. Transcriptomic Analysis of Two Lentinula edodes Genotypes With Different Cadmium Accumulation Ability. Front Microbiol 2020; 11:558104. [PMID: 33042065 PMCID: PMC7526509 DOI: 10.3389/fmicb.2020.558104] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Accepted: 08/24/2020] [Indexed: 01/26/2023] Open
Abstract
Lentinula edodes, also known as Xiang'gu, is commonly eaten in cultures around the world. However, L. edodes is particularly susceptible to enrichment with heavy metals, particularly cadmium (Cd), which is toxic to human health. Understanding the molecular mechanism and mining key genes involved in Cd enrichment will facilitate genetic modification of L. edodes strains. Two L. edodes genotypes, Le4625 (with higher Cd enrichment capability) and Le4606 (with lower Cd enrichment capability) were used in this study. The Cd concentrations in the mycelia of the tested genotypes differed significantly after Cd (0.1 mg/L) exposure; and the Cd content in Le4625 (1.390 ± 0.098 mg/kg) was approximately three-fold that in Le4606 (0.440 ± 0.038 mg/kg) after 7 h of Cd exposure. A total of 24,592 transcripts were assessed by RNA-Seq to explore variance in Cd accumulation. Firstly, differentially expressed genes (DEGs) were analyzed separately following Cd exposure. In comparison with Ld4625, Ld4606 showed a greater number of Cd-induced changes in transcription. In Ld4606, DEGs following Cd exposure were associated with transmembrane transport, glutathione transfer and cytochrome P450, indicating that these genes could be involved in Cd resistance in L. edodes. Next, Le4606 and Le4625 were exposed to Cd, after which DEGs were identified to explore genetic factors affecting Cd accumulation. After Cd exposure, DEGs between Le4606 and Le4625 encoded proteins involved in multiple biological pathways, including transporters on the membrane, cell wall modification, oxidative stress response, translation, degradation, and signaling pathways. Cadmium enrichment in cells may activate MAPK signaling and the anti-oxidative stress response, which can subsequently alter signal transduction and the intracellular oxidation/reduction balance. Furthermore, several possible candidate genes involved in the Cd accumulation were identified, including the major facilitator superfamily genes, heat shock proteins, and laccase 11, a multicopper oxidase. This comparison of the transcriptomes of two L. edodes strains with different capacities for Cd accumulation provides valuable insight into the cultivation of mushrooms with less Cd enrichment and also serves as a reference for the construction of engineered strains for environmental pollution control.
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Affiliation(s)
- Hailong Yu
- Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, National Engineering Research Center of Edible Fungi, Shanghai, China.,Engineering Research Centre of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, China
| | - Qiaozhen Li
- Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, National Engineering Research Center of Edible Fungi, Shanghai, China
| | - Xiufen Shen
- Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, National Engineering Research Center of Edible Fungi, Shanghai, China.,Engineering Research Centre of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, China
| | - Lujun Zhang
- Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, National Engineering Research Center of Edible Fungi, Shanghai, China
| | - Jianyu Liu
- Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, National Engineering Research Center of Edible Fungi, Shanghai, China
| | - Qi Tan
- Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, National Engineering Research Center of Edible Fungi, Shanghai, China
| | - Yu Li
- Engineering Research Centre of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, China
| | - Beibei Lv
- Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences, Shanghai, China
| | - Xiaodong Shang
- Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, National Engineering Research Center of Edible Fungi, Shanghai, China
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19
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Estrada-Rivera M, Hernández-Oñate MÁ, Dautt-Castro M, Gallardo-Negrete JDJ, Rebolledo-Prudencio OG, Uresti-Rivera EE, Arenas-Huertero C, Herrera-Estrella A, Casas-Flores S. IPA-1 a Putative Chromatin Remodeler/Helicase-Related Protein of Trichoderma virens Plays Important Roles in Antibiosis Against Rhizoctonia solani and Induction of Arabidopsis Systemic Disease Resistance. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2020; 33:808-824. [PMID: 32101077 DOI: 10.1094/mpmi-04-19-0092-r] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Trichoderma spp. are filamentous fungi that colonize plant roots conferring beneficial effects to plants, either indirectly through the induction of their defense systems or directly through the suppression of phytopathogens in the rhizosphere. Transcriptomic analyses of Trichoderma spp. emerged as a powerful method for identifying the molecular events underlying the establishment of this beneficial relationship. Here, we focus on the transcriptomic response of Trichoderma virens during its interaction with Arabidopsis seedlings. The main response of T. virens to cocultivation with Arabidopsis was the repression of gene expression. The biological processes of transport and metabolism of carbohydrates were downregulated, including a set of cell wall-degrading enzymes putatively relevant for root colonization. Repression of such genes reached their basal levels at later times in the interaction, when genes belonging to the biological process of copper ion transport were induced, a necessary process providing copper as a cofactor for cell wall-degrading enzymes with the auxiliary activities class. RNA-Seq analyses showed the induction of a member of the SNF2 family of chromatin remodelers/helicase-related proteins, which was named IPA-1 (increased protection of Arabidopsis-1). Sequence analyses of IPA-1 showed its closest relatives to be members of the Rad5/Rad16 and SNF2 subfamilies; however, it grouped into a different clade. Although deletion of IPA-1 in T. virens did not affect its growth, the antibiotic activity of Δipa-1 culture filtrates against Rhizoctonia solani diminished but it remained unaltered against Botrytis cinerea. Triggering of the plant defense genes in plants treated with Δipa-1 was higher, showing enhanced resistance against Pseudomonas syringae but not against B. cinerea as compared with the wild type.
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Affiliation(s)
- Magnolia Estrada-Rivera
- IPICYT, División de Biología Molecular, Camino a la presa San José No. 2055, Colonia Lomas 4a sección, C.P. 78216, San Luis Potosí, Mexico
| | - Miguel Ángel Hernández-Oñate
- CONACYT-Centro de Investigación en Alimentación y Desarrollo, Carretera Gustavo Enrique Astiazarán Rosas No. 46, La Victoria, C.P. 83304. Hermosillo, Sonora, Mexico
| | - Mitzuko Dautt-Castro
- IPICYT, División de Biología Molecular, Camino a la presa San José No. 2055, Colonia Lomas 4a sección, C.P. 78216, San Luis Potosí, Mexico
| | - José de Jesús Gallardo-Negrete
- IPICYT, División de Biología Molecular, Camino a la presa San José No. 2055, Colonia Lomas 4a sección, C.P. 78216, San Luis Potosí, Mexico
| | | | - Edith Elena Uresti-Rivera
- Facultad de Ciencias Químicas, Departamento de Inmunología y Biología Celular y Molecular, Universidad Autónoma de San Luis Potosí, Av. Salvador Nava s/n, Zona Universitaria, 78290, San Luis Potosí, Mexico
| | - Catalina Arenas-Huertero
- Facultad de Ciencias, Universidad Autónoma de San Luis Potosí, Av. Chapultepec No. 1570. Priv. del Pedregal 78295, San Luis Potosí, Mexico
| | - Alfredo Herrera-Estrella
- Laboratorio Nacional de Genómica para la Biodiversidad, CINVESTAV-Irapuato, C.P. 36824, Irapuato, Gto., México
| | - Sergio Casas-Flores
- IPICYT, División de Biología Molecular, Camino a la presa San José No. 2055, Colonia Lomas 4a sección, C.P. 78216, San Luis Potosí, Mexico
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20
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Gao J, Chen B, Lin H, Liu Y, Wei Y, Chen F, Li W. Identification and characterization of the glutathione S-Transferase (GST) family in radish reveals a likely role in anthocyanin biosynthesis and heavy metal stress tolerance. Gene 2020; 743:144484. [PMID: 32081694 DOI: 10.1016/j.gene.2020.144484] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Revised: 02/14/2020] [Accepted: 02/15/2020] [Indexed: 11/26/2022]
Abstract
Glutathione S-transferases (GSTs) are a large complex family of enzymes (EC 2.5.1.18) that play vital roles in flavonoid metabolism and plant growth and development and are responsive to heavy metal stress. However, knowledge about GST genes in radish (a vegetable crop with an extraordinary capacity to adapt to heavy metal stresses) is limited. Therefore, it is critical to identify putative candidate GST genes responsible for heavy metal stress tolerance and anthocyanin biosynthesis. In this study, we first identified 82 R. sativus GST (RsGST) genes using various bioinformatic approaches, and their expression profiles were characterized from RNAseq data. These RsGST genes could be grouped into 7 major subclasses: tau (43 members), phi (21 members), tetrachlorohydroquinone dehalogenase (7 members), dehydroascorbat reductase (5 members), zeta (3 members), lambda (2 members) and theta (1 member). In addition, most of the RsGST genes showed organ-specific expression in our study. Moreover, the transcripts of RsGSTF12-1 and RsGSTF12-2, belonging to the phi class, might be candidates encoding anthocyanin transporters in carmine radish, whereas the tau class, consisting of RsGSTU13-1, RsGSTU19, RsGSTU24-1, and RsGSTU3, and theta class, consisting of RsGSTT1-1, might be defend radish against adverse heavy metal stresses. These results will aid in understanding the functions of the GST family related to heavy metal stress and anthocyanin biosynthesis, thereby potentially improving radish breeding programs for high-pigment-content material as well as HM-tolerant material.
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Affiliation(s)
- Jian Gao
- School of Advanced Agriculture and Bioengineering, Yangtze Normal University, Fuling 408100, China; Green Intelligence Environmental School, Yangtze Normal University, Fuling 408100, China
| | - Baowei Chen
- School of Advanced Agriculture and Bioengineering, Yangtze Normal University, Fuling 408100, China
| | - Haijian Lin
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest Region, Ministry of Agriculture, Maize Research Institute of Sichuan Agricultural University, Wenjiang, Sichuan, China
| | - Yi Liu
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest Region, Ministry of Agriculture, Maize Research Institute of Sichuan Agricultural University, Wenjiang, Sichuan, China
| | - Yao Wei
- School of Advanced Agriculture and Bioengineering, Yangtze Normal University, Fuling 408100, China
| | - Fabo Chen
- School of Advanced Agriculture and Bioengineering, Yangtze Normal University, Fuling 408100, China; Green Intelligence Environmental School, Yangtze Normal University, Fuling 408100, China
| | - Wenbo Li
- School of Advanced Agriculture and Bioengineering, Yangtze Normal University, Fuling 408100, China; Green Intelligence Environmental School, Yangtze Normal University, Fuling 408100, China.
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21
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Sun Y, Lu Q, Cao Y, Wang M, Cheng X, Yan Q. Comparative Transcriptome Analysis of the Molecular Mechanism of the Hairy Roots of Brassica campestris L. in Response to Cadmium Stress. Int J Mol Sci 2019; 21:ijms21010180. [PMID: 31888010 PMCID: PMC6981690 DOI: 10.3390/ijms21010180] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Revised: 12/20/2019] [Accepted: 12/20/2019] [Indexed: 02/07/2023] Open
Abstract
Brassica campestris L., a hyperaccumulator of cadmium (Cd), is considered a candidate plant for efficient phytoremediation. The hairy roots of Brassica campestris L are chosen here as a model plant system to investigate the response mechanism of Brassica campestris L. to Cd stress. High-throughput sequencing technology is used to identify genes related to Cd tolerance. A total of 2394 differentially expressed genes (DEGs) are identified by RNA-Seq analysis, among which 1564 genes are up-regulated, and 830 genes are down-regulated. Data from the gene ontology (GO) analysis indicate that DEGs are mainly involved in metabolic processes. Glutathione metabolism, in which glutathione synthetase and glutathione S-transferase are closely related to Cd stress, is identified in the Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. A Western blot shows that glutathione synthetase and glutathione S-transferase are involved in Cd tolerance. These results provide a preliminary understanding of the Cd tolerance mechanism of Brassica campestris L. and are, hence, of particular importance to the future development of an efficient phytoremediation process based on hairy root cultures, genetic modification, and the subsequent regeneration of the whole plant.
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Affiliation(s)
| | | | | | | | - Xiyu Cheng
- Correspondence: (X.C.); (Q.Y.); Tel.: +86-138-1027-4418 (X.C.); +86-138-1093-8871 (Q.Y.)
| | - Qiong Yan
- Correspondence: (X.C.); (Q.Y.); Tel.: +86-138-1027-4418 (X.C.); +86-138-1093-8871 (Q.Y.)
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22
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Kumar S, Prasad S, Yadav KK, Shrivastava M, Gupta N, Nagar S, Bach QV, Kamyab H, Khan SA, Yadav S, Malav LC. Hazardous heavy metals contamination of vegetables and food chain: Role of sustainable remediation approaches - A review. ENVIRONMENTAL RESEARCH 2019; 179:108792. [PMID: 31610391 DOI: 10.1016/j.envres.2019.108792] [Citation(s) in RCA: 176] [Impact Index Per Article: 35.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2019] [Revised: 09/12/2019] [Accepted: 10/01/2019] [Indexed: 05/23/2023]
Abstract
This review emphasizes the role of toxic metal remediation approaches due to their broad sustainability and applicability. The rapid developmental processes can incorporate a large quantity of hazardous and unseen heavy metals in all the segments of the environment, including soil, water, air and plants. The released hazardous heavy metals (HHMs) entered into the food chain and biomagnified into living beings via food and vegetable consumption and originate potentially health-threatening effects. The physical and chemical remediation approaches are restricted and localized and, mainly applied to wastewater and soils and not the plant. The nanotechnological, biotechnological and genetical approaches required to more rectification and sustainability. A cellular, molecular and nano-level understanding of the pathways and reactions are responsible for potentially toxic metals (TMs) accumulation. These approaches can enable the development of crop varieties with highly reduced concentrations of TMs in their consumable foods and vegetables. As a critical analysis by authors observed that nanoparticles could provide very high adaptability for both in-situ and ex-situ remediation of hazardous heavy metals (HHMs) in the environment. These methods could be used for the improvement of the inbuilt genetic potential and phytoremediation ability of plants by developing transgenic. These biological processes involve the transfer of gene of interest, which plays a role in hazardous metal uptake, transport, stabilization, inactivation and accumulation to increased host tolerance. This review identified that use of nanoremediation and combined biotechnological and, transgenic could help to enhance phytoremediation efficiency in a sustainable way.
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Affiliation(s)
- Sandeep Kumar
- Centre for Environment Science and Climate Resilient Agriculture, Indian Agricultural Research Institute, New Delhi 110012, India.
| | - Shiv Prasad
- Centre for Environment Science and Climate Resilient Agriculture, Indian Agricultural Research Institute, New Delhi 110012, India
| | - Krishna Kumar Yadav
- Institute of Environment and Development Studies, Bundelkhand University, Kanpur Road, Jhansi 284128, India.
| | - Manoj Shrivastava
- Centre for Environment Science and Climate Resilient Agriculture, Indian Agricultural Research Institute, New Delhi 110012, India
| | - Neha Gupta
- Institute of Environment and Development Studies, Bundelkhand University, Kanpur Road, Jhansi 284128, India
| | - Shivani Nagar
- Division of Plant Physiology, Indian Agricultural Research Institute, New Delhi 110012, India
| | - Quang-Vu Bach
- Institute of Research and Development, Duy Tan University, Danang 550000, Viet Nam.
| | - Hesam Kamyab
- UTM Razak School of Engineering and Advanced Technology, Universiti Teknologi Malaysia, Malaysia
| | - Shakeel A Khan
- Centre for Environment Science and Climate Resilient Agriculture, Indian Agricultural Research Institute, New Delhi 110012, India
| | - Sunita Yadav
- Centre for Environment Science and Climate Resilient Agriculture, Indian Agricultural Research Institute, New Delhi 110012, India
| | - Lal Chand Malav
- National Bureau of Soil Survey and Land Use Planning, Nagpur, India
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23
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Oshiquiri LH, Dos Santos KRA, Ferreira Junior SA, Steindorff AS, Barbosa Filho JR, Mota TM, Ulhoa CJ, Georg RC. Trichoderma harzianum transcriptome in response to cadmium exposure. Fungal Genet Biol 2019; 134:103281. [PMID: 31626987 DOI: 10.1016/j.fgb.2019.103281] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2019] [Revised: 10/11/2019] [Accepted: 10/14/2019] [Indexed: 11/18/2022]
Abstract
Cadmium (Cd) is a heavy metal present in the environment mainly as a result of industrial contamination that can cause toxic effects to life. Some microorganisms, as Trichoderma harzianum, a fungus used in biocontrol, are able to survive in polluted environments and act as bioremediators. Aspects about the tolerance to the metal have been widely studied in other fungi although there are a few reports about the response of T. harzianum. In this study, we determined the effects of cadmium over growth of T. harzianum and used RNA-Seq to identify significant genes and processes regulated in the metal presence. Cadmium inhibited the fungus growth proportionally to its concentration although the fungus exhibited tolerance as it continued to grow, even in the highest concentrations used. A total of 3767 (1993 up and 1774 down) and 2986 (1606 up and 1380 down) differentially expressed genes were detected in the mycelium of T. harzianum cultivated in the presence of 1.0 mg mL-1 or 2.0 mg mL-1 of CdCl2, respectively, compared to the absence of the metal. Of these, 2562 were common to both treatments. Biological processes related to cellular homeostasis, transcription initiation, sulfur compound biosynthetic and metabolic processes, RNA processing, protein modification and vesicle-mediated transport were up-regulated. Carbohydrate metabolic processes were down-regulated. Pathway enrichment analysis indicated induction of glutathione and its precursor's metabolism. Interestingly, it also indicated an intense transcriptional induction, especially by up-regulation of spliceosome components. Carbohydrate metabolism was repressed, especially the mycoparasitism-related genes, suggesting that the mycoparasitic ability of T. harzianum could be affected during cadmium exposure. These results contribute to the advance of the current knowledge about the response of T. harzianum to cadmium exposure and provide significant targets for biotechnological improvement of this fungus as a bioremediator and a biocontrol agent.
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Affiliation(s)
- Letícia Harumi Oshiquiri
- Instituto de Ciências Biológicas, Universidade Federal de Goiás, Goiânia, Goiás CEP:74690-900, Brazil
| | | | | | - Andrei Stecca Steindorff
- U.S. Department of Energy (DOE) Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
| | | | - Thuana Marcolino Mota
- Instituto de Ciências Biológicas, Universidade Federal de Goiás, Goiânia, Goiás CEP:74690-900, Brazil
| | - Cirano José Ulhoa
- Instituto de Ciências Biológicas, Universidade Federal de Goiás, Goiânia, Goiás CEP:74690-900, Brazil
| | - Raphaela Castro Georg
- Instituto de Ciências Biológicas, Universidade Federal de Goiás, Goiânia, Goiás CEP:74690-900, Brazil.
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24
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Du B, Zhao W, An Y, Li Y, Zhang X, Song L, Guo C. Overexpression of an alfalfa glutathione S-transferase gene improved the saline-alkali tolerance of transgenic tobacco. Biol Open 2019; 8:bio.043505. [PMID: 31471294 PMCID: PMC6777358 DOI: 10.1242/bio.043505] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
Abiotic stresses restrict the productivity and quality of agricultural crops. Glutathione S-transferase (GST) utilizes glutathione to scavenge reactive oxygen species (ROS) that result from abiotic stresses. This study aimed to determine the expression pattern of the MsGSTU8 gene and its effects on saline-alkali tolerance. MsGSTU8, from alfalfa (Medicago sativa 'Zhaodong'), was transformed into transgenic tobacco (Nicotiana tabacum) and overexpressed to determine its effects on saline-alkali tolerance. The gene products in alfalfa localized to the cytoplasm and the transcript levels were higher in the leaves than the roots and stems. Expression was strongly induced by cold, drought, salt and saline-alkali stresses as well as abscisic acid (ABA) treatments. The transgenic tobacco lines had significantly higher transcription levels of the abiotic stress-related genes and higher GST activity than the wild types. Transgenic tobacco lines with saline-alkali treatments maintained their chlorophyll content, showed improved antioxidant enzyme activity and soluble sugar levels, reduced ion leakage, O2 .-, H2O2 accumulation and malondialdehyde content. Our results indicate that overexpression of MsGSTU8 could improve resistance to saline-alkali stresses by decreasing the accumulation of ROS and increasing the levels of antioxidant enzymes. Furthermore, they suggest that MsGSTU8 could be utilized for transgenic crop plant breeding.
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Affiliation(s)
- Binghao Du
- Key Laboratory of Molecular and Cytogenetics, College of Life Science and Technology, Harbin Normal University, Harbin 150025, Heilongjiang Province, China
| | - Weidi Zhao
- Key Laboratory of Molecular and Cytogenetics, College of Life Science and Technology, Harbin Normal University, Harbin 150025, Heilongjiang Province, China
| | - Yimin An
- Key Laboratory of Molecular and Cytogenetics, College of Life Science and Technology, Harbin Normal University, Harbin 150025, Heilongjiang Province, China
| | - Yakun Li
- Key Laboratory of Molecular and Cytogenetics, College of Life Science and Technology, Harbin Normal University, Harbin 150025, Heilongjiang Province, China
| | - Xue Zhang
- Key Laboratory of Molecular and Cytogenetics, College of Life Science and Technology, Harbin Normal University, Harbin 150025, Heilongjiang Province, China
| | - Lili Song
- Key Laboratory of Molecular and Cytogenetics, College of Life Science and Technology, Harbin Normal University, Harbin 150025, Heilongjiang Province, China
| | - Changhong Guo
- Key Laboratory of Molecular and Cytogenetics, College of Life Science and Technology, Harbin Normal University, Harbin 150025, Heilongjiang Province, China
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25
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26
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Chen SC, Ren JJ, Zhao HJ, Wang XL, Wang TH, Jin SD, Wang ZH, Li CY, Liu AR, Lin XM, Ahammed GJ. Trichoderma harzianum Improves Defense Against Fusarium oxysporum by Regulating ROS and RNS Metabolism, Redox Balance, and Energy Flow in Cucumber Roots. PHYTOPATHOLOGY 2019; 109:972-982. [PMID: 30714883 DOI: 10.1094/phyto-09-18-0342-r] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Plant survival in the terrestrial ecosystem is influenced by both beneficial and harmful microbes. Trichoderma spp. are a group of filamentous fungi that promote plant growth and resistance to harmful microbes. Previously, we showed that the genus Trichoderma could effectively suppress Fusarium wilt in cucumber. However, the mechanisms that underlie the effects of the genus Trichoderma on plant defense have not been fully substantiated. Two essential metabolic pathways, such as the ascorbate (AsA)-glutathione (GSH) cycle and the oxidative pentose phosphate pathway (OPPP), have been shown to participate in plant tolerance to biotic stressors; nevertheless, the involvement of these pathways in Trichoderma-induced enhanced defense remains elusive. Here, we show that Trichoderma harzianum could alleviate oxidative and nitrostative stress by minimizing reactive oxygen species (ROS; hydrogen peroxide and superoxide) and reactive nitrogen species (nitric oxide [NO]) accumulation, respectively, under Fusarium oxysporum infection in cucumber roots. The genus Trichoderma enhanced antioxidant potential to counterbalance the overproduced ROS and attenuated the transcript and activity of NO synthase and nitrate reductase. The genus Trichoderma also stimulated S-nitrosylated glutathione reductase activity and reduced S-nitrosothiol and S-nitrosylated glutathione content. Furthermore, the genus Trichoderma enhanced AsA and GSH concentrations and activated their biosynthetic enzymes, γ-GCS and l-galactono-1,4-lactone dehydrogenase. Interestingly, the genus Trichoderma alleviated Fusarium-inhibited activity of glucose-6-phosphate dehydrogenase and 6-phosphogluconate dehydrogenase, enzymes involved in the OPPP. Such positive regulation of the key enzymes indicates the adequate maintenance of the AsA-GSH pathway and the OPPP, which potentially contributed to improve redox balance, energy flow, and defense response. Our study advances the current knowledge of Trichoderma-induced enhanced defense against F. oxysporum in cucumber.
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Affiliation(s)
- Shuang-Chen Chen
- 1 College of Forestry, Henan University of Science and Technology, Luoyang 471023, People's Republic of China
- 2 Department of Plant Science, Agricultural and Animal Husbandry College, Tibet University, Linzhi 860000, People's Republic of China
| | - Jing-Jing Ren
- 1 College of Forestry, Henan University of Science and Technology, Luoyang 471023, People's Republic of China
| | - Hong-Jiao Zhao
- 1 College of Forestry, Henan University of Science and Technology, Luoyang 471023, People's Republic of China
| | - Xiang-Li Wang
- 1 College of Forestry, Henan University of Science and Technology, Luoyang 471023, People's Republic of China
| | - Tai-Hang Wang
- 1 College of Forestry, Henan University of Science and Technology, Luoyang 471023, People's Republic of China
- 2 Department of Plant Science, Agricultural and Animal Husbandry College, Tibet University, Linzhi 860000, People's Republic of China
| | - Sun-Da Jin
- 1 College of Forestry, Henan University of Science and Technology, Luoyang 471023, People's Republic of China
| | - Zhong-Hong Wang
- 1 College of Forestry, Henan University of Science and Technology, Luoyang 471023, People's Republic of China
- 2 Department of Plant Science, Agricultural and Animal Husbandry College, Tibet University, Linzhi 860000, People's Republic of China
| | - Chong-Yang Li
- 1 College of Forestry, Henan University of Science and Technology, Luoyang 471023, People's Republic of China
| | - Ai-Rong Liu
- 1 College of Forestry, Henan University of Science and Technology, Luoyang 471023, People's Republic of China
| | - Xiao-Min Lin
- 1 College of Forestry, Henan University of Science and Technology, Luoyang 471023, People's Republic of China
| | - Golam Jalal Ahammed
- 1 College of Forestry, Henan University of Science and Technology, Luoyang 471023, People's Republic of China
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27
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Anwar S, Khan S, Hussain I, Bashir R, Fahad S. Chelators induced uptake of cadmium and modulation of water relation, antioxidants, and photosynthetic traits of maize. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2019; 26:17577-17590. [PMID: 31020535 DOI: 10.1007/s11356-019-05170-6] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2019] [Accepted: 04/11/2019] [Indexed: 06/09/2023]
Abstract
The present study was aimed to reveal the effect of cadmium (Cd)-polluted soil on the activation of antioxidant enzymes, photosynthesis, pigments, water relation, and other biochemical traits and comparative effect of synthetic and organic chelators. A pot experiment was conducted using two maize varieties grown in Cd-contaminated (15 and 30 mg kg-1) soil and chelators (1 mM EDTA, and 1 mM citric acid). Cd decreased biomass and photosynthetic traits while increased malondialdehyde (MDA) contents, total proteins, and antioxidant enzyme activities. Addition of EDTA enhanced Cd uptake, antioxidative enzyme, and total proteins; however, it reduced the water, osmotic, and turgor potential as compared to Cd alone. Addition of citric acid has lessened the antioxidant enzyme activities and MDA contents and enhanced the plant biomass as compared to Cd alone. Increases in antioxidants and MDA content were found to be positively related to the Cd contents in shoot and root. The application of citric acid significantly alleviated the Cd-induced toxic effects, showing remarkable improvement in biomass. These results indicated that EDTA was more effective for mobilizing Cd from soil to the root and shoot than citric acid; however, the physiological traits and plant biomass were more strongly inhibited by EDTA than by the Cd. Our study implies that citric acid ameliorated the negative effect of Cd on physiological traits and biomass, and hence could be used effectively for Cd phytoextraction.
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Affiliation(s)
- Sumera Anwar
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China.
- Nuclear Institute for Agriculture and Biology, Faisalabad, Pakistan.
| | - Shahbaz Khan
- College of Agriculture, Shanxi Agricultural University, Taigu, China
| | - Iqbal Hussain
- Department of Botany, Government College University, Faisalabad, Pakistan
| | - Rohina Bashir
- Department of Botany, Government College University, Faisalabad, Pakistan
| | - Shah Fahad
- Department of Agriculture, University of Swabi, Khyber Pakhtunkhwa, Amber, Pakistan
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28
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Malinich EA, Wang K, Mukherjee PK, Kolomiets M, Kenerley CM. Differential expression analysis of Trichoderma virens RNA reveals a dynamic transcriptome during colonization of Zea mays roots. BMC Genomics 2019; 20:280. [PMID: 30971198 PMCID: PMC6458689 DOI: 10.1186/s12864-019-5651-z] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2018] [Accepted: 03/27/2019] [Indexed: 12/16/2022] Open
Abstract
Background Trichoderma spp. are majorly composed of plant-beneficial symbionts widely used in agriculture as bio-control agents. Studying the mechanisms behind Trichoderma-derived plant benefits has yielded tangible bio-industrial products. To better take advantage of this fungal-plant symbiosis it is necessary to obtain detailed knowledge of which genes Trichoderma utilizes during interaction with its plant host. In this study, we explored the transcriptional activity undergone by T. virens during two phases of symbiosis with maize; recognition of roots and after ingress into the root cortex. Results We present a model of T. virens – maize interaction wherein T. virens experiences global repression of transcription upon recognition of maize roots and then induces expression of a broad spectrum of genes during colonization of maize roots. The genes expressed indicate that, during colonization of maize roots, T. virens modulates biosynthesis of phytohormone-like compounds, secretes a plant-environment specific array of cell wall degrading enzymes and secondary metabolites, remodels both actin-based and cell membrane structures, and shifts metabolic activity. We also highlight transcription factors and signal transduction genes important in future research seeking to unravel the molecular mechanisms of T. virens activity in maize roots. Conclusions T. virens displays distinctly different transcriptional profiles between recognizing the presence of maize roots and active colonization of these roots. A though understanding of these processes will allow development of T. virens as a bio-control agent. Further, the publication of these datasets will target future research endeavors specifically to genes of interest when considering T. virens – maize symbiosis. Electronic supplementary material The online version of this article (10.1186/s12864-019-5651-z) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Elizabeth A Malinich
- Department of Plant Pathology and Microbiology, Texas A&M University, College Station, TX, USA
| | - Ken Wang
- Department of Plant Pathology and Microbiology, Texas A&M University, College Station, TX, USA
| | - Prasun K Mukherjee
- Department of Plant Pathology and Microbiology, Texas A&M University, College Station, TX, USA
| | - Michael Kolomiets
- Department of Plant Pathology and Microbiology, Texas A&M University, College Station, TX, USA
| | - Charles M Kenerley
- Department of Plant Pathology and Microbiology, Texas A&M University, College Station, TX, USA.
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29
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Nelson DR, Chaiboonchoe A, Fu W, Hazzouri KM, Huang Z, Jaiswal A, Daakour S, Mystikou A, Arnoux M, Sultana M, Salehi-Ashtiani K. Potential for Heightened Sulfur-Metabolic Capacity in Coastal Subtropical Microalgae. iScience 2019; 11:450-465. [PMID: 30684492 PMCID: PMC6348204 DOI: 10.1016/j.isci.2018.12.035] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2018] [Revised: 11/07/2018] [Accepted: 12/28/2018] [Indexed: 12/05/2022] Open
Abstract
The activities of microalgae support nutrient cycling that helps to sustain aquatic and terrestrial ecosystems. Most microalgal species, especially those from the subtropics, are genomically uncharacterized. Here we report the isolation and genomic characterization of 22 microalgal species from subtropical coastal regions belonging to multiple clades and three from temperate areas. Halotolerant strains including Halamphora, Dunaliella, Nannochloris, and Chloroidium comprised the majority of these isolates. The subtropical-based microalgae contained arrays of methyltransferase, pyridine nucleotide-disulfide oxidoreductase, abhydrolase, cystathionine synthase, and small-molecule transporter domains present at high relative abundance. We found that genes for sulfate transport, sulfotransferase, and glutathione S-transferase activities were especially abundant in subtropical, coastal microalgal species and halophytic species in general. Our metabolomics analyses indicate lineage- and habitat-specific sets of biomolecules implicated in niche-specific biological processes. This work effectively expands the collection of available microalgal genomes by ∼50%, and the generated resources provide perspectives for studying halophyte adaptive traits. We have sequenced 20+ microallgal genomes from the subtropics This new collection increases the available microalgal genomes by ∼50% Metabolomics indicates lineage- and habitat-specificity of biomolecules Coastal, subtropical species of microalgae show expansion of sulfur-metabolic genes
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Affiliation(s)
- David R Nelson
- Center for Genomics and Systems Biology, New York University Abu Dhabi, Abu Dhabi, UAE
| | | | - Weiqi Fu
- Division of Science and Math, New York University Abu Dhabi, Abu Dhabi, UAE
| | - Khaled M Hazzouri
- Khalifa Center for Genetic Engineering and Biotechnology (KCGEB), United Arab Emirates University, Al-Ain, UAE
| | - Ziyuan Huang
- Department of Computer Science, New York University Shanghai, Shanghai, China
| | - Ashish Jaiswal
- Division of Science and Math, New York University Abu Dhabi, Abu Dhabi, UAE
| | - Sarah Daakour
- Center for Genomics and Systems Biology, New York University Abu Dhabi, Abu Dhabi, UAE
| | - Alexandra Mystikou
- Center for Genomics and Systems Biology, New York University Abu Dhabi, Abu Dhabi, UAE
| | - Marc Arnoux
- Center for Genomics and Systems Biology, New York University Abu Dhabi, Abu Dhabi, UAE
| | - Mehar Sultana
- Center for Genomics and Systems Biology, New York University Abu Dhabi, Abu Dhabi, UAE
| | - Kourosh Salehi-Ashtiani
- Center for Genomics and Systems Biology, New York University Abu Dhabi, Abu Dhabi, UAE; Division of Science and Math, New York University Abu Dhabi, Abu Dhabi, UAE.
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30
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Poveda J, Hermosa R, Monte E, Nicolás C. The Trichoderma harzianum Kelch Protein ThKEL1 Plays a Key Role in Root Colonization and the Induction of Systemic Defense in Brassicaceae Plants. FRONTIERS IN PLANT SCIENCE 2019; 10:1478. [PMID: 31803213 PMCID: PMC6873215 DOI: 10.3389/fpls.2019.01478] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2019] [Accepted: 10/24/2019] [Indexed: 05/21/2023]
Abstract
The fungal genus Trichoderma includes strains with biocontrol and/or biostimulant potential and is recognized as a source of genes with biotechnological value. In a previous study the Kelch domain protein, encoded by the Thkel1 gene of Trichoderma harzianum T34, was found to confer tolerance to salt stress when expressed in plants of Arabidopsis thaliana. In the present work, we have overexpressed Thkel1 in rapeseed plants in order to generate an additional biotechnological tool for analyzing the role of this gene in Trichoderma-plant interactions. The overexpression of this gene in Brassicaceae plants improves responses to pathogens through the induction of systemic defenses mediated by jasmonic acid, facilitates root colonization by modulating the myrosinase activity, and, as a result, increases plant productivity. These effects were also observed in Thkel1 overexpressing plants subjected to abiotic stress conditions. Additionally, the differences detected in root colonization levels by T. harzianum wild type and Thkel1 silenced transformants between Arabidopsis or rapeseed and tomato plants indicate that ThKEL1 interacts in different ways in Brassicaceae and non-Brassicaceae plants.
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Affiliation(s)
- Jorge Poveda
- Department of Botany and Plant Physiology, Spanish-Portuguese Institute for Agricultural Research (CIALE), University of Salamanca, Salamanca, Spain
| | - Rosa Hermosa
- Department of Microbiology and Genetics, Spanish-Portuguese Institute for Agricultural Research (CIALE), University of Salamanca, Salamanca, Spain
| | - Enrique Monte
- Department of Microbiology and Genetics, Spanish-Portuguese Institute for Agricultural Research (CIALE), University of Salamanca, Salamanca, Spain
- *Correspondence: Enrique Monte,
| | - Carlos Nicolás
- Department of Botany and Plant Physiology, Spanish-Portuguese Institute for Agricultural Research (CIALE), University of Salamanca, Salamanca, Spain
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Srivastava D, Verma G, Chauhan AS, Pande V, Chakrabarty D. Rice (Oryza sativa L.) tau class glutathione S-transferase (OsGSTU30) overexpression in Arabidopsis thaliana modulates a regulatory network leading to heavy metal and drought stress tolerance. Metallomics 2019; 11:375-389. [PMID: 30516767 DOI: 10.1039/c8mt00204e] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
OsGSTU30 increases the abiotic stress tolerance in plants either by its catalytic activity or by modulating the expression of stress responsive genes.
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Affiliation(s)
- Dipali Srivastava
- Genetics and Molecular Biology Division
- CSIR-National Botanical Research Institute
- India
- Department of Biotechnology
- Kumaun University
| | - Giti Verma
- Genetics and Molecular Biology Division
- CSIR-National Botanical Research Institute
- India
| | | | - Veena Pande
- Department of Biotechnology
- Kumaun University
- India
| | - Debasis Chakrabarty
- Genetics and Molecular Biology Division
- CSIR-National Botanical Research Institute
- India
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Zhu H, Ai H, Cao L, Sui R, Ye H, Du D, Sun J, Yao J, Chen K, Chen L. Transcriptome analysis providing novel insights for Cd-resistant tall fescue responses to Cd stress. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2018; 160:349-356. [PMID: 29860131 DOI: 10.1016/j.ecoenv.2018.05.066] [Citation(s) in RCA: 58] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2018] [Revised: 04/26/2018] [Accepted: 05/24/2018] [Indexed: 05/17/2023]
Abstract
Cadmium (Cd) is a severely toxic heavy metal and environmental pollutant. Tall fescue is a cold season turf grass which has high resistance to Cd as well as the ability to enrich it. To investigate the molecular mechanism underlying the adaptability of tall fescue to Cd stress, RNA-Seq was used to examine Cd stress responses of tall fescue at a transcriptional level. A total of 12 cDNA libraries were constructed from the total RNA of roots or leaves of tall fescue with or without Cd treatments. A total of 2594 (1768 up- and 826 down-regulated) differentially expressed genes (DEGs) were detected in the roots of Cd-stressed tall fescue compared with control roots (R_cd vs R_ck), while only 52 (29 up- and 23 down-regulated) DEGs were found in the leaves of Cd-stressed plants versus the controls (L_cd vs L_ck). The genes encoding glutathione S-transferase (GST), transporter proteins including the ABC transporter, ZRT/IRT-like protein, potassium transporter/channel, nitrate transporter, putative iron-phytosiderophore transporter, copper-transporting ATPase or transporter and multidrug and toxic compound extrusion (MATE) proteins, and numerous transcription factors were found to be significantly induced in Cd-treated roots. In addition, pathogenesis/disease-related gene mRNAs were accumulated in Cd-treated roots of tall fescue. Furthermore, the significantly enriched KEGG pathways in roots were related to 'Glutathione metabolism', 'Ribosome', 'alpha-Linolenic acid metabolism', 'Diterpenoid biosynthesis', 'Sulfur metabolism', 'Phenylpropanoid biosynthesis', 'Protein processing in endoplasmic reticulum', 'Protein export' and 'Nitrogen metabolism'. The study provides novel insights for further understanding the molecular mechanisms of tall fescue responses to Cd stress.
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Affiliation(s)
- Huihui Zhu
- College of Resources and Environmental Science, South-Central University for Nationalities, Wuhan 430074, China; Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
| | - Honglian Ai
- College of Pharmacy, South-Central University for Nationalities, Wuhan 430074, China
| | - Liwen Cao
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Ran Sui
- College of Resources and Environmental Science, South-Central University for Nationalities, Wuhan 430074, China
| | - Hengpeng Ye
- College of Resources and Environmental Science, South-Central University for Nationalities, Wuhan 430074, China
| | - Dongyun Du
- College of Resources and Environmental Science, South-Central University for Nationalities, Wuhan 430074, China
| | - Jie Sun
- College of Resources and Environmental Science, South-Central University for Nationalities, Wuhan 430074, China
| | - Jun Yao
- China University of Geosciences Beijing, School of Water Resources & Environment, Beijing 100083, China
| | - Ke Chen
- College of Resources and Environmental Science, South-Central University for Nationalities, Wuhan 430074, China.
| | - Liang Chen
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China.
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33
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Fanelli F, Liuzzi VC, Logrieco AF, Altomare C. Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain. BMC Genomics 2018; 19:662. [PMID: 30200883 PMCID: PMC6131884 DOI: 10.1186/s12864-018-5049-3] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2018] [Accepted: 08/31/2018] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND So far, biocontrol agent selection has been performed mainly by time consuming in vitro confrontation tests followed by extensive trials in greenhouse and field. An alternative approach is offered by application of high-throughput techniques, which allow extensive screening and comparison among strains for desired genetic traits. In the genus Trichoderma, the past assignments of particular features or strains to one species need to be reconsidered according to the recent taxonomic revisions. Here we present the genome of a biocontrol strain formerly known as Trichoderma harzianum ITEM 908, which exhibits both growth promoting capabilities and antagonism against different fungal pathogens, including Fusarium graminearum, Rhizoctonia solani, and the root-knot nematode Meloidogyne incognita. By genomic analysis of ITEM 908 we investigated the occurrence and the relevance of genes associated to biocontrol and stress tolerance, providing a basis for future investigation aiming to unravel the complex relationships between genomic endowment and exhibited activities of this strain. RESULTS The MLST analysis of ITS-TEF1 concatenated datasets reclassified ITEM 908 as T. atrobrunneum, a species recently described within the T. harzianum species complex and phylogenetically close to T. afroharzianum and T. guizhouense. Genomic analysis revealed the presence of a broad range of genes encoding for carbohydrate active enzymes (CAZYmes), proteins involved in secondary metabolites production, peptaboils, epidithiodioxopiperazines and siderophores potentially involved in parasitism, saprophytic degradation as well as in biocontrol and antagonistic activities. This abundance is comparable to other Trichoderma spp. in the T. harzianum species complex, but broader than in other biocontrol species and in the species T. reesei, known for its industrial application in cellulase production. Comparative analysis also demonstrated similar genomic organization of major secondary metabolites clusters, as in other Trichoderma species. CONCLUSIONS Reported data provide a contribution to a deeper understanding of the mode of action and identification of activity-specific genetic markers useful for selection and improvement of biocontrol strains. This work will also enlarge the availability of genomic data to perform comparative studies with the aim to correlate phenotypic differences with genetic diversity of Trichoderma species.
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Affiliation(s)
- Francesca Fanelli
- Institute of Sciences of Food Production, National Research Council, Bari, Italy
| | - Vania Cosma Liuzzi
- Institute of Sciences of Food Production, National Research Council, Bari, Italy
| | | | - Claudio Altomare
- Institute of Sciences of Food Production, National Research Council, Bari, Italy
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Koźmińska A, Wiszniewska A, Hanus-Fajerska E, Muszyńska E. Recent strategies of increasing metal tolerance and phytoremediation potential using genetic transformation of plants. PLANT BIOTECHNOLOGY REPORTS 2018; 12:1-14. [PMID: 29503668 PMCID: PMC5829118 DOI: 10.1007/s11816-017-0467-2] [Citation(s) in RCA: 51] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2017] [Accepted: 12/18/2017] [Indexed: 05/18/2023]
Abstract
Avoidance and reduction of soil contamination with heavy metals is one of the most serious global challenges. Nowadays, science offers us new opportunities of utilizing plants to extract toxic elements from the soil by means of phytoremediation. Plant abilities to uptake, translocate, and transform heavy metals, as well as to limit their toxicity, may be significantly enhanced via genetic engineering. This paper provides a comprehensive review of recent strategies aimed at the improvement of plant phytoremediation potential using plant transformation and employing current achievements in nuclear and cytoplasmic genome transformation. Strategies for obtaining plants suitable for effective soil clean-up and tolerant to excessive concentrations of heavy metals are critically assessed. Promising directions in genetic manipulations, such as gene silencing and cis- and intragenesis, are also discussed. Moreover, the ways of overcoming disadvantages of phytoremediation using genetic transformation approachare proposed. The knowledge gathered here could be useful for designing new research aimed at biotechnological improvement of phytoremediation efficiency.
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Affiliation(s)
- Aleksandra Koźmińska
- Institute of Plant Biology and Biotechnology, Faculty of Biotechnology and Horticulture, University of Agriculture in Krakow, Al. 29 Listopada 54, 31-425 Kraków, Poland
| | - Alina Wiszniewska
- Institute of Plant Biology and Biotechnology, Faculty of Biotechnology and Horticulture, University of Agriculture in Krakow, Al. 29 Listopada 54, 31-425 Kraków, Poland
| | - Ewa Hanus-Fajerska
- Institute of Plant Biology and Biotechnology, Faculty of Biotechnology and Horticulture, University of Agriculture in Krakow, Al. 29 Listopada 54, 31-425 Kraków, Poland
| | - Ewa Muszyńska
- Department of Botany, Faculty of Agriculture and Biology, Warsaw University of Life Sciences (SGGW), Nowoursynowska 159, Building 37, 02-776 Warsaw, Poland
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Kumar S, Trivedi PK. Glutathione S-Transferases: Role in Combating Abiotic Stresses Including Arsenic Detoxification in Plants. FRONTIERS IN PLANT SCIENCE 2018; 9:751. [PMID: 29930563 PMCID: PMC5999759 DOI: 10.3389/fpls.2018.00751] [Citation(s) in RCA: 206] [Impact Index Per Article: 34.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2018] [Accepted: 05/16/2018] [Indexed: 05/20/2023]
Abstract
Arsenic (As), naturally occurring metalloid and a potential hazardous material, is found in low concentrations in the environment and emerges from natural sources and anthropogenic activities. The presence of As in ground water, which is used for irrigation, is a matter of great concern since it affects crop productivity and contaminates food chain. In plants, As alters various metabolic pathways in cells including the interaction of substrates/enzymes with the sulfhydryl groups of proteins and the replacement of phosphate in ATP for energy. In addition, As stimulates the generation of free radicals and reactive oxygen species (ROS), resulting in oxidative stress. Glutathione S-transferases (GSTs) quench reactive molecules with the addition of glutathione (GSH) and protect the cell from oxidative damage. GSTs are a multigene family of isozymes, known to catalyze the conjugation of GSH to miscellany of electrophilic and hydrophobic substrates. GSTs have been reported to be associated with plant developmental processes and are responsive to multitude of stressors. In past, several studies suggested involvement of plant GST gene family in As response due to the requirement of sulfur and GSH in the detoxification of this toxic metalloid. This review provides updated information about the role of GSTs in abiotic and biotic stresses with an emphasis on As uptake, metabolism, and detoxification in plants. Further, the genetic manipulations that helped in enhancing the understanding of the function of GSTs in abiotic stress response and heavy metal detoxification has been reviewed.
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Fukushima A, Iwasa M, Nakabayashi R, Kobayashi M, Nishizawa T, Okazaki Y, Saito K, Kusano M. Effects of Combined Low Glutathione with Mild Oxidative and Low Phosphorus Stress on the Metabolism of Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 2017; 8:1464. [PMID: 28894456 PMCID: PMC5581396 DOI: 10.3389/fpls.2017.01464] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2017] [Accepted: 08/07/2017] [Indexed: 05/29/2023]
Abstract
Plants possess highly sensitive mechanisms that monitor environmental stress levels for a dose-dependent fine-tuning of their growth and development. Differences in plant responses to severe and mild abiotic stresses have been recognized. Although many studies have revealed that glutathione can contribute to plant tolerance to various environmental stresses, little is known about the relationship between glutathione and mild abiotic stress, especially the effect of stress-induced altered glutathione levels on the metabolism. Here, we applied a systems biology approach to identify key pathways involved in the gene-to-metabolite networks perturbed by low glutathione content under mild abiotic stress in Arabidopsis thaliana. We used glutathione synthesis mutants (cad2-1 and pad2-1) and plants overexpressing the gene encoding γ-glutamylcysteine synthetase, the first enzyme of the glutathione biosynthetic pathway. The plants were exposed to two mild stress conditions-oxidative stress elicited by methyl viologen and stress induced by the limited availability of phosphate. We observed that the mutants and transgenic plants showed similar shoot growth as that of the wild-type plants under mild abiotic stress. We then selected the synthesis mutants and performed multi-platform metabolomics and microarray experiments to evaluate the possible effects on the overall metabolome and the transcriptome. As a common oxidative stress response, several flavonoids that we assessed showed overaccumulation, whereas the mild phosphate stress resulted in increased levels of specific kaempferol- and quercetin-glycosides. Remarkably, in addition to a significant increased level of sugar, osmolytes, and lipids as mild oxidative stress-responsive metabolites, short-chain aliphatic glucosinolates over-accumulated in the mutants, whereas the level of long-chain aliphatic glucosinolates and specific lipids decreased. Coordinated gene expressions related to glucosinolate and flavonoid biosynthesis also supported the metabolite responses in the pad2-1 mutant. Our results suggest that glutathione synthesis mutants accelerate transcriptional regulatory networks to control the biosynthetic pathways involved in glutathione-independent scavenging metabolites, and that they might reconfigure the metabolic networks in primary and secondary metabolism, including lipids, glucosinolates, and flavonoids. This work provides a basis for the elucidation of the molecular mechanisms involved in the metabolic and transcriptional regulatory networks in response to combined low glutathione content with mild oxidative and nutrient stress in A. thaliana.
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Affiliation(s)
| | - Mami Iwasa
- RIKEN Center for Sustainable Resource ScienceYokohama, Japan
- Nissan Chemical Industries, Ltd.Funabashi, Japan
| | - Ryo Nakabayashi
- RIKEN Center for Sustainable Resource ScienceYokohama, Japan
| | | | | | - Yozo Okazaki
- RIKEN Center for Sustainable Resource ScienceYokohama, Japan
| | - Kazuki Saito
- RIKEN Center for Sustainable Resource ScienceYokohama, Japan
- Graduate School of Pharmaceutical Sciences, Chiba UniversityChiba, Japan
| | - Miyako Kusano
- RIKEN Center for Sustainable Resource ScienceYokohama, Japan
- Graduate School of Life and Environmental Sciences, University of TsukubaTsukuba, Japan
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37
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Kashyap PL, Rai P, Srivastava AK, Kumar S. Trichoderma for climate resilient agriculture. World J Microbiol Biotechnol 2017; 33:155. [PMID: 28695465 DOI: 10.1007/s11274-017-2319-1] [Citation(s) in RCA: 63] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2016] [Accepted: 07/05/2017] [Indexed: 01/16/2023]
Abstract
Climate change is one of the biggest challenges of the twenty-first century for sustainable agricultural production. Several reports highlighted the need for better agricultural practices and use of eco-friendly methods for sustainable crop production under such situations. In this context, Trichoderma species could be a model fungus to sustain crop productivity. Currently, these are widely used as inoculants for biocontrol, biofertilization, and phytostimulation. They are reported to improve photosynthetic efficiency, enhance nutrient uptake and increase nitrogen use efficiency in crops. Moreover, they can be used to produce bio-energy, facilitate plants for adaptation and mitigate adverse effect of climate change. The technological advancement in high throughput DNA sequencing and biotechnology provided deep insight into the complex and diverse biotic interactions established in nature by Trichoderma spp. and efforts are being made to translate this knowledge to enhance crop growth, resistance to disease and tolerance to abiotic stresses under field conditions. The discovery of several traits and genes that are involved in the beneficial effects of Trichoderma spp. has resulted in better understanding of the performance of bioinoculants in the field, and will lead to more efficient use of these strains and possibly to their improvement by genetic modification. The present mini-review is an effort to elucidate the molecular basis of plant growth promotion and defence activation by Trichoderma spp. to garner broad perspectives regarding their functioning and applicability for climate resilient agriculture.
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Affiliation(s)
- Prem Lal Kashyap
- ICAR-Indian Institute of Wheat and Barley Research (IIWBR), Karnal, 132001, India. .,ICAR-National Bureau of Agriculturally Important Microorganisms (NBAIM), Mau, Uttar Pradesh, 275103, India.
| | - Pallavi Rai
- ICAR-National Bureau of Agriculturally Important Microorganisms (NBAIM), Mau, Uttar Pradesh, 275103, India
| | - Alok Kumar Srivastava
- ICAR-National Bureau of Agriculturally Important Microorganisms (NBAIM), Mau, Uttar Pradesh, 275103, India
| | - Sudheer Kumar
- ICAR-Indian Institute of Wheat and Barley Research (IIWBR), Karnal, 132001, India
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Anwar S, Khan S, Ashraf MY, Noman A, Zafar S, Liu L, Ullah S, Fahad S. Impact of chelator-induced phytoextraction of cadmium on yield and ionic uptake of maize. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2017; 19:505-513. [PMID: 27819494 DOI: 10.1080/15226514.2016.1254153] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Enhanced phytoextraction uses soil chelators to increase the bioavailability of heavy metals. This study tested the effectiveness of ethylenediaminetetraacetic acid (EDTA) and citric acid in enhancing cadmium (Cd) phytoextraction and their effects on the growth, yield, and ionic uptake of maize (Zea mays). Maize seeds of two cultivars were sown in pots treated with 15 (Cd15) or 30 mg Cd kg-1 soil (Cd30). EDTA and citric acid at 0.5 g kg-1 each were applied 2 weeks after germination. Results demonstrated that the growth, yield per plant, and total grain weight were reduced by exposure to Cd. EDTA increased the uptake of Cd in shoots, roots, and grains of both maize varieties. Citric acid did not enhance the uptake of Cd, rather it ameliorated the toxicity of Cd, as shown by increased shoot and root length and biomass. Cadmium toxicity reduced the number of grains, rather than the grain size. The maize cultivar Sahiwal-2002 extracted 1.6% and 3.6% of Cd from soil in both Cd+ EDTA treatments. Hence, our study implies that maize can be used to successfully phytoremediate Cd from soil using EDTA, without reducing plant biomass or yield.
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Affiliation(s)
- Sumera Anwar
- a College of Plant Science and Technology , Huazhong Agriculture University , Wuhan , Hubei , China
- b Soil and Environmental Science Division , Nuclear Institutes for Agriculture and Biology (NIAB) , Faisalabad , Pakistan
| | - Shahbaz Khan
- a College of Plant Science and Technology , Huazhong Agriculture University , Wuhan , Hubei , China
| | - M Yasin Ashraf
- b Soil and Environmental Science Division , Nuclear Institutes for Agriculture and Biology (NIAB) , Faisalabad , Pakistan
| | - Ali Noman
- c Department of Botany , Government College University , Faisalabad , Pakistan
| | - Sara Zafar
- c Department of Botany , Government College University , Faisalabad , Pakistan
| | - Lijun Liu
- a College of Plant Science and Technology , Huazhong Agriculture University , Wuhan , Hubei , China
| | - Sana Ullah
- a College of Plant Science and Technology , Huazhong Agriculture University , Wuhan , Hubei , China
| | - Shah Fahad
- a College of Plant Science and Technology , Huazhong Agriculture University , Wuhan , Hubei , China
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Nianiou-Obeidat I, Madesis P, Kissoudis C, Voulgari G, Chronopoulou E, Tsaftaris A, Labrou NE. Plant glutathione transferase-mediated stress tolerance: functions and biotechnological applications. PLANT CELL REPORTS 2017; 36:791-805. [PMID: 28391528 DOI: 10.1007/s00299-017-2139-7] [Citation(s) in RCA: 113] [Impact Index Per Article: 16.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2017] [Accepted: 03/27/2017] [Indexed: 05/07/2023]
Abstract
Plant glutathione transferases (EC 2.5.1.18, GSTs) are an ancient, multimember and diverse enzyme class. Plant GSTs have diverse roles in plant development, endogenous metabolism, stress tolerance, and xenobiotic detoxification. Their study embodies both fundamental aspects and agricultural interest, because of their ability to confer tolerance against biotic and abiotic stresses and to detoxify herbicides. Here we review the biotechnological applications of GSTs towards developing plants that are resistant to biotic and abiotic stresses. We integrate recent discoveries, highlight, and critically discuss the underlying biochemical and molecular pathways involved. We elaborate that the functions of GSTs in abiotic and biotic stress adaptation are potentially a result of both catalytic and non-catalytic functions. These include conjugation of reactive electrophile species with glutathione and the modulation of cellular redox status, biosynthesis, binding, and transport of secondary metabolites and hormones. Their major universal functions under stress underline the potential in developing climate-resilient cultivars through a combination of molecular and conventional breeding programs. We propose that future GST engineering efforts through rational and combinatorial approaches, would lead to the design of improved isoenzymes with purpose-designed catalytic activities and novel functional properties. Concurrent GST-GSH metabolic engineering can incrementally increase the effectiveness of GST biotechnological deployment.
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Affiliation(s)
- Irini Nianiou-Obeidat
- Laboratory of Genetics and Plant Breeding, School of Agriculture, Forestry and Natural Environment, Aristotle University of Thessaloniki, P.O. Box 261, 54124, Thessaloniki, Greece.
| | - Panagiotis Madesis
- Institute of Applied Biosciences, CERTH, 6th km Charilaou-Thermis Road, Thermi, P.O. Box 361, 57001, Thessaloniki, Greece
| | - Christos Kissoudis
- Laboratory of Genetics and Plant Breeding, School of Agriculture, Forestry and Natural Environment, Aristotle University of Thessaloniki, P.O. Box 261, 54124, Thessaloniki, Greece
- Wageningen UR Plant Breeding, Wageningen University and Research Centre, Droevendaalsesteeg 1, 6708PB, Wageningen, The Netherlands
| | - Georgia Voulgari
- Laboratory of Genetics and Plant Breeding, School of Agriculture, Forestry and Natural Environment, Aristotle University of Thessaloniki, P.O. Box 261, 54124, Thessaloniki, Greece
| | - Evangelia Chronopoulou
- Laboratory of Enzyme Technology, Department of Biotechnology, School of Food, Biotechnology and Development, Agricultural University of Athens, 75 Iera Odos Street, 11855, Athens, Greece
| | - Athanasios Tsaftaris
- Laboratory of Genetics and Plant Breeding, School of Agriculture, Forestry and Natural Environment, Aristotle University of Thessaloniki, P.O. Box 261, 54124, Thessaloniki, Greece
- Institute of Applied Biosciences, CERTH, 6th km Charilaou-Thermis Road, Thermi, P.O. Box 361, 57001, Thessaloniki, Greece
| | - Nikolaos E Labrou
- Laboratory of Enzyme Technology, Department of Biotechnology, School of Food, Biotechnology and Development, Agricultural University of Athens, 75 Iera Odos Street, 11855, Athens, Greece
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Zhu FY, Chan WL, Chen MX, Kong RPW, Cai C, Wang Q, Zhang JH, Lo C. SWATH-MS Quantitative Proteomic Investigation Reveals a Role of Jasmonic Acid during Lead Response in Arabidopsis. J Proteome Res 2016; 15:3528-3539. [DOI: 10.1021/acs.jproteome.6b00258] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Fu-Yuan Zhu
- School
of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China
- School
of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong, China
- Shenzhen
Research Institute, The Chinese University of Hong Kong, Shenzhen, China
| | - Wai-Lung Chan
- School
of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Mo-Xian Chen
- School
of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong, China
| | | | - Congxi Cai
- Department
of Horticulture, Zhejiang University, Hangzhou 310058, China
| | - Qiaomei Wang
- Department
of Horticulture, Zhejiang University, Hangzhou 310058, China
| | - Jian-Hua Zhang
- School
of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong, China
| | - Clive Lo
- School
of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China
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Yang G, Xu Z, Peng S, Sun Y, Jia C, Zhai M. In planta characterization of a tau class glutathione S-transferase gene from Juglans regia (JrGSTTau1) involved in chilling tolerance. PLANT CELL REPORTS 2016; 35:681-92. [PMID: 26687965 DOI: 10.1007/s00299-015-1912-8] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2015] [Revised: 11/11/2015] [Accepted: 11/26/2015] [Indexed: 05/03/2023]
Abstract
KEY MESSAGE JrGSTTau1 is an important candidate gene for plant chilling tolerance regulation. A tau subfamily glutathione S-transferase (GST) gene from Juglans regia (JrGSTTau1, GeneBank No.: KT351091) was cloned and functionally characterized. JrGSTTau1 was induced by 16, 12, 10, 8, and 6 °C stresses. The transiently transformed J. regia showed much greater GST, glutathione peroxidase (GPX), superoxide dismutase (SOD), and peroxidase (POD) activities and lower H2O2, malondialdehyde (MDA), reactive oxygen species (ROS), and electrolyte leakage (EL) rate than prokII (empty vector control) and RNAi::JrGSTTau1 under cold stress, indicating that JrGSTTau1 may be involved in chilling tolerance. To further confirm the role of JrGSTTau1, JrGSTTau1 was heterologously expressed in tobacco, transgenic Line5, Line9, and Line12 were chosen for analysis. The germinations of WT, Line5, Line9, and Line12 were similar, but the fresh weight, primary root length, and total chlorophyll content (tcc) of the transgenic lines were significantly higher than those of WT under cold stress. When cultivated in soil, the GST and SOD activities of transgenic tobacco were significantly higher than those of WT; however, the MDA and H2O2 contents of WT were on average 1.47- and 1.96-fold higher than those of Line5, Line9, and Line12 under 16 °C. The DAB, Evans blue, and PI staining further confirmed these results. Furthermore, the abundances of NtGST, MnSOD, NtMAPK9, and CDPK15 were elevated in 35S::JrGSTTau1 tobacco compared with WT. These results suggested that JrGSTTau1 improves the plant chilling tolerance involved in protecting enzymes, ROS scavenging, and stress-related genes, indicating that JrGSTTau1 is a candidate gene for the potential application in molecular breeding to enhance plant abiotic stress tolerance.
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Affiliation(s)
- Guiyan Yang
- Laboratory of Walnut Research Center, College of Forestry, Northwest A & F University, Yangling, 712100, Shaanxi, People's Republic of China
| | - Zhenggang Xu
- College of Life Science and Technology, Central South University of Forestry and Technology, 498 Shaoshan South Road, Changsha, 410004, Hunan Province, People's Republic of China
| | - Shaobing Peng
- Laboratory of Walnut Research Center, College of Forestry, Northwest A & F University, Yangling, 712100, Shaanxi, People's Republic of China
| | - Yudong Sun
- Laboratory of Walnut Research Center, College of Forestry, Northwest A & F University, Yangling, 712100, Shaanxi, People's Republic of China
| | - Caixia Jia
- Laboratory of Walnut Research Center, College of Forestry, Northwest A & F University, Yangling, 712100, Shaanxi, People's Republic of China
| | - Meizhi Zhai
- Laboratory of Walnut Research Center, College of Forestry, Northwest A & F University, Yangling, 712100, Shaanxi, People's Republic of China.
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Singh S, Parihar P, Singh R, Singh VP, Prasad SM. Heavy Metal Tolerance in Plants: Role of Transcriptomics, Proteomics, Metabolomics, and Ionomics. FRONTIERS IN PLANT SCIENCE 2016; 6:1143. [PMID: 26904030 PMCID: PMC4744854 DOI: 10.3389/fpls.2015.01143] [Citation(s) in RCA: 400] [Impact Index Per Article: 50.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2015] [Accepted: 12/02/2015] [Indexed: 05/18/2023]
Abstract
Heavy metal contamination of soil and water causing toxicity/stress has become one important constraint to crop productivity and quality. This situation has further worsened by the increasing population growth and inherent food demand. It has been reported in several studies that counterbalancing toxicity due to heavy metal requires complex mechanisms at molecular, biochemical, physiological, cellular, tissue, and whole plant level, which might manifest in terms of improved crop productivity. Recent advances in various disciplines of biological sciences such as metabolomics, transcriptomics, proteomics, etc., have assisted in the characterization of metabolites, transcription factors, and stress-inducible proteins involved in heavy metal tolerance, which in turn can be utilized for generating heavy metal-tolerant crops. This review summarizes various tolerance strategies of plants under heavy metal toxicity covering the role of metabolites (metabolomics), trace elements (ionomics), transcription factors (transcriptomics), various stress-inducible proteins (proteomics) as well as the role of plant hormones. We also provide a glance of some strategies adopted by metal-accumulating plants, also known as "metallophytes."
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Affiliation(s)
- Samiksha Singh
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of AllahabadAllahabad, India
| | - Parul Parihar
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of AllahabadAllahabad, India
| | - Rachana Singh
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of AllahabadAllahabad, India
| | - Vijay P. Singh
- Department of Botany, Government Ramanuj Pratap Singhdev Post Graduate College, Sarguja UniversityBaikunthpur, India
| | - Sheo M. Prasad
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of AllahabadAllahabad, India
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Jiang HX, Yang LT, Qi YP, Lu YB, Huang ZR, Chen LS. Root iTRAQ protein profile analysis of two Citrus species differing in aluminum-tolerance in response to long-term aluminum-toxicity. BMC Genomics 2015; 16:949. [PMID: 26573913 PMCID: PMC4647617 DOI: 10.1186/s12864-015-2133-9] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2015] [Accepted: 10/23/2015] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Limited information is available on aluminum (Al)-toxicity-responsive proteins in woody plant roots. Seedlings of 'Xuegan' (Citrus sinensis) and 'Sour pummelo' (Citrus grandis) were treated for 18 weeks with nutrient solution containing 0 (control) or 1.2 mM AlCl3 · 6H2O (+Al). Thereafter, we investigated Citrus root protein profiles using isobaric tags for relative and absolute quantification (iTRAQ). The aims of this work were to determine the molecular mechanisms of plants to deal with Al-toxicity and to identify differentially expressed proteins involved in Al-tolerance. RESULTS C. sinensis was more tolerant to Al-toxicity than C. grandis. We isolated 347 differentially expressed proteins from + Al Citrus roots. Among these proteins, 202 (96) proteins only presented in C. sinensis (C. grandis), and 49 proteins were shared by the two species. Of the 49 overlapping proteins, 45 proteins were regulated in the same direction upon Al exposure in the both species. These proteins were classified into following categories: sulfur metabolism, stress and defense response, carbohydrate and energy metabolism, nucleic acid metabolism, protein metabolism, cell transport, biological regulation and signal transduction, cell wall and cytoskeleton metabolism, and jasmonic acid (JA) biosynthesis. The higher Al-tolerance of C. sinensis may be related to several factors, including: (a) activation of sulfur metabolism; (b) greatly improving the total ability of antioxidation and detoxification; (c) up-regulation of carbohydrate and energy metabolism; (d) enhancing cell transport; (e) decreased (increased) abundances of proteins involved in protein synthesis (proteiolysis); (f) keeping a better balance between protein phosphorylation and dephosphorylation; and (g) increasing JA biosynthesis. CONCLUSIONS Our results demonstrated that metabolic flexibility was more remarkable in C. sinenis than in C. grandis roots, thus improving the Al-tolerance of C. sinensis. This provided the most integrated view of the adaptive responses occurring in Al-toxicity roots.
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Affiliation(s)
- Huan-Xin Jiang
- Institute of Plant Nutritional Physiology and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. .,College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
| | - Lin-Tong Yang
- Institute of Plant Nutritional Physiology and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. .,College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
| | - Yi-Ping Qi
- Institute of Materia Medica, Fujian Academy of Medical Sciences, Fuzhou, 350001, China.
| | - Yi-Bin Lu
- Institute of Plant Nutritional Physiology and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. .,College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
| | - Zeng-Rong Huang
- Institute of Plant Nutritional Physiology and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. .,College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
| | - Li-Song Chen
- Institute of Plant Nutritional Physiology and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. .,College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. .,The Higher Educational Key Laboratory of Fujian Province for Soil Ecosystem Health and Regulation, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. .,Fujian Key Laboratory for Plant Molecular and Cell Biology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
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Lo Cicero L, Madesis P, Tsaftaris A, Lo Piero AR. Tobacco plants over-expressing the sweet orange tau glutathione transferases (CsGSTUs) acquire tolerance to the diphenyl ether herbicide fluorodifen and to salt and drought stresses. PHYTOCHEMISTRY 2015; 116:69-77. [PMID: 25819876 DOI: 10.1016/j.phytochem.2015.03.004] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2014] [Revised: 03/11/2015] [Accepted: 03/13/2015] [Indexed: 05/23/2023]
Abstract
The glutathione transferases (GSTs) are members of a superfamily of enzymes with pivotal role in the detoxification of both xenobiotic and endogenous compounds. In this work, the generation and characterization of transgenic tobacco plants over-expressing tau glutathione transferases from Citrus sinensis (CsGSTU1 and CsGSTU2) and several cross-mutate forms of these genes are reported. Putative transformed plants were verified for the presence of the transgenes and the relative quantification of transgene copy number was evaluated by Taqman real time PCR. The analysis of gene expression revealed that transformed plants exhibit high levels of CsGSTU transcription suggesting that the insertion of the transgenes occurred in transcriptional active regions of the tobacco genome. In planta studies demonstrate that transformed tobacco plants gain tolerance against fluorodifen. Simultaneously, the wild type CsGSTU genes were in vitro expressed and their kinetic properties were determined using fluorodifen as substrate. The results show that CsGSTU2 follows a Michaelis-Menten hyperbolic kinetic, whereas CsGSTU1 generates a sigmoid plot typical of the regulatory enzymes, thus suggesting that when working at sub-lethal fluorodifen concentrations CsGSTU2 can counteract the herbicide injury more efficiently than the CsGSTU1. Moreover, the transgenic tobacco plant over-expressing CsGSTs exhibited both drought and salinity stress tolerance. However, as we show that CsGSTUs do not function as glutathione peroxidase in vitro, the protective effect against salt and drought stress is not due to a direct scavenging activity of the oxidative stress byproducts. The transgenic tobacco plants, which are described in the present study, can be helpful for phytoremediation of residual xenobiotics in the environment and overall the over-expression of CsGSTUs can be helpful to develop genetically modified crops with high resistance to abiotic stresses.
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Affiliation(s)
- Luca Lo Cicero
- Department of Agriculture, Food and Environment (Di3A), University of Catania, Via Santa Sofia 98, 95123 Catania, Italy
| | - Panagiotis Madesis
- Institute of Applied Biosciences, CERTH, 6th km Charilaou-Thermis Road, 570 01 Thermi, Thessaloniki, Greece
| | - Athanasios Tsaftaris
- Institute of Applied Biosciences, CERTH, 6th km Charilaou-Thermis Road, 570 01 Thermi, Thessaloniki, Greece
| | - Angela Roberta Lo Piero
- Department of Agriculture, Food and Environment (Di3A), University of Catania, Via Santa Sofia 98, 95123 Catania, Italy.
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Differences in Copper Absorption and Accumulation between Copper-Exclusion and Copper-Enrichment Plants: A Comparison of Structure and Physiological Responses. PLoS One 2015. [PMID: 26207743 PMCID: PMC4514476 DOI: 10.1371/journal.pone.0133424] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Abstract
Differences in copper (Cu) absorption and transport, physiological responses and structural characteristics between two types of Cu-resistant plants, Oenothera glazioviana (Cu-exclusion type) and Elsholtzia haichowensis (Cu-enrichment type), were investigated in the present study. The results indicated the following: (1) After 50 μM Cu treatment, the Cu ratio in the xylem vessels of E. haichowensis increased by 60%. A Cu adsorption experiment indicated that O. glazioviana exhibited greater resistance to Cu, and Cu absorption and the shoot/root ratio of Cu were significantly lower in O. glazioviana than in E. haichowensis. (2) An analysis of the endogenous abscisic acid (ABA) variance and exogenous ABA treatment demonstrated that the ABA levels of both plants did not differ; exogenous ABA treatment clearly reduced Cu accumulation in both plants. (3) The leaf stomatal density of O. glazioviana was significantly less than that of E. haichowensis. Guard cells in E. haichowensis plants were covered with a thick cuticle layer, the epidermal hair was more numerous and longer, and the number of xylem conduits in the root was small. (4) The transpiration rate and the stomatal conductance of O. glazioviana were both significantly lower than those of E. haichowensis, regardless of whether the plants were treated with Cu. Taken together, these results indicate that the differences in the structural characteristics between these two plant species, particularly in the characteristics related to plant transpiration, are important factors that govern whether plants acquire or exclude Cu.
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Shen M, Zhao DK, Qiao Q, Liu L, Wang JL, Cao GH, Li T, Zhao ZW. Identification of glutathione S-transferase (GST) genes from a dark septate endophytic fungus (Exophiala pisciphila) and their expression patterns under varied metals stress. PLoS One 2015; 10:e0123418. [PMID: 25884726 PMCID: PMC4401685 DOI: 10.1371/journal.pone.0123418] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2014] [Accepted: 02/18/2015] [Indexed: 11/18/2022] Open
Abstract
Glutathione S-transferases (GSTs) compose a family of multifunctional enzymes that play important roles in the detoxification of xenobiotics and the oxidative stress response. In the present study, twenty four GST genes from the transcriptome of a metal-tolerant dark septate endophyte (DSE), Exophiala pisciphila, were identified based on sequence homology, and their responses to various heavy metal exposures were also analyzed. Phylogenetic analysis showed that the 24 GST genes from E. pisciphila (EpGSTs) were divided into eight distinct classes, including seven cytosolic classes and one mitochondrial metaxin 1-like class. Moreover, the variable expression patterns of these EpGSTs were observed under different heavy metal stresses at their effective concentrations for inhibiting growth by 50% (EC50). Lead (Pb) exposure caused the up-regulation of all EpGSTs, while cadmium (Cd), copper (Cu) and zinc (Zn) treatments led to the significant up-regulation of most of the EpGSTs (p < 0.05 to p < 0.001). Furthermore, although heavy metal-specific differences in performance were observed under various heavy metals in Escherichia coli BL21 (DE3) transformed with EpGSTN-31, the over-expression of this gene was able to enhance the heavy metal tolerance of the host cells. These results indicate that E. Pisciphila harbored a diverse of GST genes and the up-regulated EpGSTs are closely related to the heavy metal tolerance of E. pisciphila. The study represents the first investigation of the GST family in E. pisciphila and provides a primary interpretation of heavy metal detoxification for E. pisciphila.
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Affiliation(s)
- Mi Shen
- Key Laboratory of Conservation and Utilization for Bioresources and Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education, Yunnan University, Kunming, Yunnan, China
| | - Da-Ke Zhao
- Key Laboratory of Conservation and Utilization for Bioresources and Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education, Yunnan University, Kunming, Yunnan, China; School of Agriculture, Yunnan University, Kunming, Yunnan, China
| | - Qin Qiao
- School of Agriculture, Yunnan University, Kunming, Yunnan, China
| | - Lei Liu
- School of Life Science, Yunnan University, Kunming, Yunnan, China
| | - Jun-Ling Wang
- Key Laboratory of Conservation and Utilization for Bioresources and Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education, Yunnan University, Kunming, Yunnan, China
| | - Guan-Hua Cao
- Key Laboratory of Conservation and Utilization for Bioresources and Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education, Yunnan University, Kunming, Yunnan, China
| | - Tao Li
- Key Laboratory of Conservation and Utilization for Bioresources and Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education, Yunnan University, Kunming, Yunnan, China
| | - Zhi-Wei Zhao
- Key Laboratory of Conservation and Utilization for Bioresources and Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education, Yunnan University, Kunming, Yunnan, China; School of Agriculture, Yunnan University, Kunming, Yunnan, China
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Nicolás C, Hermosa R, Rubio B, Mukherjee PK, Monte E. Trichoderma genes in plants for stress tolerance- status and prospects. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2014; 228:71-8. [PMID: 25438787 DOI: 10.1016/j.plantsci.2014.03.005] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2013] [Revised: 01/31/2014] [Accepted: 03/01/2014] [Indexed: 05/04/2023]
Abstract
Many filamentous fungi from the genus Trichoderma are well known for their anti-microbial properties. Certain genes from Trichoderma spp. have been identified and transferred to plants for improving biotic and abiotic stress tolerance, as well for applications in bioremediation. Several Trichoderma genomes have been sequenced and many are in the pipeline, facilitating high throughput gene analysis and increasing the availability of candidate transgenes. This, coupled with improved plant transformation systems, is expected to usher in a new era in plant biotechnology where several genes from these antagonistic fungi can be transferred into plants to achieve enhanced stress tolerance, bioremediation activity, herbicide tolerance, and reduction of phytotoxins. In this review, we illustrate the major achievements made by transforming plants with Trichoderma genes as well as their possible mode of action. Moreover, examples of efficient application of genetically modified plants as biofactories to produce active Trichoderma enzymes are indicated.
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Affiliation(s)
- Carlos Nicolás
- Departamento de Fisiología Vegetal, Centro Hispano-Luso de Investigaciones Agrarias (CIALE), Facultad de Biología, Universidad de Salamanca, C/Río Duero 12, Campus de Villamayor, 37185 Salamanca, Spain
| | - Rosa Hermosa
- Departamento de Microbiología y Genética, Centro Hispano-Luso de Investigaciones Agrarias (CIALE), Facultad de Farmacia, Universidad de Salamanca, C/Río Duero 12, Campus de Villamayor, 37185 Salamanca, Spain
| | - Belén Rubio
- Departamento de Microbiología y Genética, Centro Hispano-Luso de Investigaciones Agrarias (CIALE), Facultad de Farmacia, Universidad de Salamanca, C/Río Duero 12, Campus de Villamayor, 37185 Salamanca, Spain
| | - Prasun K Mukherjee
- NuclearAgriculture and Biotechnology Division, Bhabha Atomic Research Centre, Mumbai 400085, India.
| | - Enrique Monte
- Departamento de Microbiología y Genética, Centro Hispano-Luso de Investigaciones Agrarias (CIALE), Facultad de Farmacia, Universidad de Salamanca, C/Río Duero 12, Campus de Villamayor, 37185 Salamanca, Spain
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Cui W, Chen H, Zhu K, Jin Q, Xie Y, Cui J, Xia Y, Zhang J, Shen W. Cadmium-induced hydrogen sulfide synthesis is involved in cadmium tolerance in Medicago sativa by reestablishment of reduced (homo)glutathione and reactive oxygen species homeostases. PLoS One 2014; 9:e109669. [PMID: 25275379 PMCID: PMC4183592 DOI: 10.1371/journal.pone.0109669] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2014] [Accepted: 08/31/2014] [Indexed: 12/28/2022] Open
Abstract
Until now, physiological mechanisms and downstream targets responsible for the cadmium (Cd) tolerance mediated by endogenous hydrogen sulfide (H2S) have been elusive. To address this gap, a combination of pharmacological, histochemical, biochemical and molecular approaches was applied. The perturbation of reduced (homo)glutathione homeostasis and increased H2S production as well as the activation of two H2S-synthetic enzymes activities, including L-cysteine desulfhydrase (LCD) and D-cysteine desulfhydrase (DCD), in alfalfa seedling roots were early responses to the exposure of Cd. The application of H2S donor sodium hydrosulfide (NaHS), not only mimicked intracellular H2S production triggered by Cd, but also alleviated Cd toxicity in a H2S-dependent fashion. By contrast, the inhibition of H2S production caused by the application of its synthetic inhibitor blocked NaHS-induced Cd tolerance, and destroyed reduced (homo)glutathione and reactive oxygen species (ROS) homeostases. Above mentioned inhibitory responses were further rescued by exogenously applied glutathione (GSH). Meanwhile, NaHS responses were sensitive to a (homo)glutathione synthetic inhibitor, but reversed by the cotreatment with GSH. The possible involvement of cyclic AMP (cAMP) signaling in NaHS responses was also suggested. In summary, LCD/DCD-mediated H2S might be an important signaling molecule in the enhancement of Cd toxicity in alfalfa seedlings mainly by governing reduced (homo)glutathione and ROS homeostases.
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Affiliation(s)
- Weiti Cui
- College of Life Sciences, Laboratory Center of Life Sciences, Nanjing Agricultural University, Jiangsu Province, Nanjing, China
| | - Huiping Chen
- Key Laboratory of Protection and Development Utilization of Tropical Crop Germplasm Resources, Hainan University, Haikou, China
| | - Kaikai Zhu
- College of Life Sciences, Laboratory Center of Life Sciences, Nanjing Agricultural University, Jiangsu Province, Nanjing, China
| | - Qijiang Jin
- College of Life Sciences, Laboratory Center of Life Sciences, Nanjing Agricultural University, Jiangsu Province, Nanjing, China
| | - Yanjie Xie
- College of Life Sciences, Laboratory Center of Life Sciences, Nanjing Agricultural University, Jiangsu Province, Nanjing, China
| | - Jin Cui
- College of Life Sciences, Laboratory Center of Life Sciences, Nanjing Agricultural University, Jiangsu Province, Nanjing, China
| | - Yan Xia
- College of Life Sciences, Laboratory Center of Life Sciences, Nanjing Agricultural University, Jiangsu Province, Nanjing, China
| | - Jing Zhang
- College of Life Sciences, Laboratory Center of Life Sciences, Nanjing Agricultural University, Jiangsu Province, Nanjing, China
| | - Wenbiao Shen
- College of Life Sciences, Laboratory Center of Life Sciences, Nanjing Agricultural University, Jiangsu Province, Nanjing, China
- * E-mail:
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Demeter Z, Kanalas P, Máthé C, Cseke K, Szőllősi E, M-Hamvas M, Jámbrik K, Kiss Z, Mészáros I. Osmotic stress responses of individual white oak (Quercus section, Quercus subgenus) genotypes cultured in vitro. JOURNAL OF PLANT PHYSIOLOGY 2014; 171:16-24. [PMID: 24331415 DOI: 10.1016/j.jplph.2013.09.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2013] [Revised: 09/11/2013] [Accepted: 09/22/2013] [Indexed: 06/03/2023]
Abstract
White oaks (Quercus section, Quercus subgenus) are widely distributed in Europe. Quercus petraea (sessile oak), an economically important species is predicted to be affected by climate change. Q. pubescens (pubescent oak) and Q. virgiliana (Italian pubescent oak) are economically less important, drought tolerant species. Frequent hybridization of white oaks was observed and currently the introgression of Q. pubescens and Q. virgiliana in non-mediterranean regions of Europe has been reported. Our goal was to use tissue cultures established from individual trees of the above taxa and their putative hybrids, all present in the forest stand of Síkfőkút LTER Research Area (NE Hungary) as simple experimental model systems for studying drought/osmotic stress tolerance. Tissue cultures are more suitable models for such studies, than seedlings, because they are genetically identical to the parent plants. Polyethylene glycol (PEG6000) treatments were used for this purpose. The identification of taxa was based on leaf morphological traits and microsatellite analysis and showed that Q. petraea is genetically distinct to all other taxa examined. We established six callus lines of Quercus. As expected, in Q. petraea cultures PEG6000 induced severe loss of fresh weight and the ability to recover after removal of the osmoticum, which was not characteristic for Q. pubescens and Q. virgiliana. Putative hybrids exhibited an intermediate response to osmotic stress. Activity gels showed the increase of single-strand preferring (SSP) nuclease and no significant change of guaiacol-peroxidase activities in drought-sensitive genotypes/cultures and no significant increase of SSP nuclease activities accompanied with increases of guaiacol-peroxidase activities in drought-tolerant ones. This indicates that drought/osmotic stress tolerance is associated to increased capacity of scavenging reactive oxygen species and hence less susceptibility to DNA damage. Our results confirm that tissue cultures of oak are suitable model systems for studying drought/osmotic stress responses.
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Affiliation(s)
- Zita Demeter
- University of Debrecen, Faculty of Science and Technology, Department of Botany, PO Box 14, H-4010 Debrecen, Hungary
| | - Péter Kanalas
- University of Debrecen, Faculty of Science and Technology, Department of Botany, PO Box 14, H-4010 Debrecen, Hungary
| | - Csaba Máthé
- University of Debrecen, Faculty of Science and Technology, Department of Botany, PO Box 14, H-4010 Debrecen, Hungary.
| | - Klára Cseke
- Hungarian Forest Research Institute, PO Box 30/A, H-9600 Sárvár, Hungary
| | - Erzsébet Szőllősi
- University of Debrecen, Faculty of Science and Technology, Department of Botany, PO Box 14, H-4010 Debrecen, Hungary
| | - Márta M-Hamvas
- University of Debrecen, Faculty of Science and Technology, Department of Botany, PO Box 14, H-4010 Debrecen, Hungary
| | - Katalin Jámbrik
- University of Debrecen, Faculty of Science and Technology, Department of Botany, PO Box 14, H-4010 Debrecen, Hungary
| | - Zoltán Kiss
- University of Debrecen, Faculty of Science and Technology, Department of Botany, PO Box 14, H-4010 Debrecen, Hungary
| | - Ilona Mészáros
- University of Debrecen, Faculty of Science and Technology, Department of Botany, PO Box 14, H-4010 Debrecen, Hungary.
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Isolation of GsGST19 from Glycine soja and Analysis of Saline-Alkaline Tolerance for Transgenic Medicago sativa. ZUOWU XUEBAO 2013. [DOI: 10.3724/sp.j.1006.2012.00971] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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