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Männistö E, Ylänne H, Kokkonen N, Korrensalo A, Laine AM, Yli-Pirilä P, Keinänen M, Tuittila ES. Impact of severe drought on biogenic volatile organic compounds emissions from Sphagnum mosses in boreal peatlands. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 951:175738. [PMID: 39182777 DOI: 10.1016/j.scitotenv.2024.175738] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2024] [Revised: 08/17/2024] [Accepted: 08/21/2024] [Indexed: 08/27/2024]
Abstract
Climate change and the associated increased frequency of extreme weather events are likely to alter the emissions of biogenic volatile organic compounds (BVOCs) from boreal peatlands. Hydrologically sensitive Sphagnum mosses are keystone species in boreal peatland ecosystems that are known to emit various BVOCs. However, it is not known how their emissions respond to seasonal droughts. In this study, we quantified the effect of severe drought, and subsequent recovery, on the BVOC emissions from Sphagnum mosses using mesocosms originating from wet open and naturally drier treed boreal fens and bogs. Here we report the emissions of 30 detected BVOCs, of which isoprene was the most abundant with an average flux rate of 5.6 μg m-2 h-1 (range 0-31.9 μg m-2 h-1). The experimental 43-day ecohydrological drought reduced total BVOC and isoprene emissions. In addition, in mesocosms originating from bogs, sesquiterpene emissions decreased with the drought, while the emissions of green leaf volatiles were induced. Sesquiterpene emissions remained low even six weeks after rewetting, indicating a long and limited recovery from the drought. Our results further imply that long-term exposure to deep water tables does not decrease sensitivity of Sphagnum to an extreme drought; we did not detect differences in the emission rates or drought responses between Sphagna originating from wet open and naturally drier treed habitats. Yet, the differences between fen and bog originating Sphagna indicate local variability in the BVOC quality changes following drought, potentially altering the climate feedback of boreal peatland BVOC emissions.
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Affiliation(s)
- Elisa Männistö
- Peatland and Soil Ecology Research Group, School of Forest Sciences, University of Eastern Finland, P.O. Box 111, 80101 Joensuu, Finland.
| | - Henni Ylänne
- Peatland and Soil Ecology Research Group, School of Forest Sciences, University of Eastern Finland, P.O. Box 111, 80101 Joensuu, Finland
| | - Nicola Kokkonen
- Peatland and Soil Ecology Research Group, School of Forest Sciences, University of Eastern Finland, P.O. Box 111, 80101 Joensuu, Finland; Department of Environmental and Biological Sciences, University of Eastern Finland, P.O. Box 111, 80101 Joensuu, Finland
| | - Aino Korrensalo
- Natural Resources Institute Finland (Luke), Yliopistokatu 6B, 80100 Joensuu, Finland; Department of Environmental and Biological Sciences, University of Eastern Finland, P.O. Box 1627, 70211 Kuopio, Finland
| | - Anna M Laine
- Peatland and Soil Ecology Research Group, School of Forest Sciences, University of Eastern Finland, P.O. Box 111, 80101 Joensuu, Finland
| | - Pasi Yli-Pirilä
- Department of Environmental and Biological Sciences, University of Eastern Finland, P.O. Box 1627, 70211 Kuopio, Finland
| | - Markku Keinänen
- Department of Environmental and Biological Sciences, University of Eastern Finland, P.O. Box 111, 80101 Joensuu, Finland
| | - Eeva-Stiina Tuittila
- Peatland and Soil Ecology Research Group, School of Forest Sciences, University of Eastern Finland, P.O. Box 111, 80101 Joensuu, Finland
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2
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Yáñez-Serrano AM, Corbera J, Portillo-Estrada M, Janssens IA, Llusià J, Filella I, Peñuelas J, Preece C, Sabater F, Fernández-Martínez M. Drivers of biogenic volatile organic compound emissions in hygrophytic bryophytes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174293. [PMID: 38936717 DOI: 10.1016/j.scitotenv.2024.174293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 05/16/2024] [Accepted: 06/23/2024] [Indexed: 06/29/2024]
Abstract
Bryophytes can both emit and take up biogenic volatile organic compounds (BVOCs) to and from the environment. Despite the scarce study of these exchanges, BVOCs have been shown to be important for a wide range of ecological roles. Bryophytes are the most ancient clade of land plants and preserve very similar traits to those first land colonisers. Therefore, the study of these plants can help understand the early processes of BVOC emissions as an adaptation to terrestrial life. Here, we determine the emission rates of BVOCs from different bryophyte species to understand what drives such emissions. We studied 26 bryophyte species from temperate regions that can be found in mountain springs located in NE Spain. Bryophyte BVOC emission presented no significant phylogenetic signal for any of the compounds analysed. Hence, we used mixed linear models to investigate the species-specific differences and eco-physiological and environmental drivers of bryophyte BVOC emission. In general, species-specific variability was the main factor explaining bryophyte BVOC emissions; but additionally, photosynthetic rates and light intensity increased BVOC emissions. Despite emission measurements reported here were conducted at 30°, and may not directly correspond to emission rates in natural conditions, most of the screened species have never been measured before for BVOC emissions and therefore this information can help understand the drivers of the emissions of BVOCs in bryophytes.
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Affiliation(s)
- A M Yáñez-Serrano
- IDAEA-CSIC, 08034 Barcelona, Spain; CREAF, E08193 Bellaterra (Cerdanyola del Vallès), Catalonia, Spain; CSIC, Global Ecology Unit, CREAF-CSIC-UAB, E08193 Bellaterra (Cerdanyola del Vallès), Catalonia, Spain.
| | - J Corbera
- Delegació de la Serralada Litoral Central, ICHN, Barcelona, Catalonia, Spain
| | - M Portillo-Estrada
- PLECO (Plants and Ecosystems), Department of Biology, University of Antwerp, Wilrijk, Belgium
| | - I A Janssens
- PLECO (Plants and Ecosystems), Department of Biology, University of Antwerp, Wilrijk, Belgium
| | - J Llusià
- CREAF, E08193 Bellaterra (Cerdanyola del Vallès), Catalonia, Spain; CSIC, Global Ecology Unit, CREAF-CSIC-UAB, E08193 Bellaterra (Cerdanyola del Vallès), Catalonia, Spain
| | - I Filella
- CREAF, E08193 Bellaterra (Cerdanyola del Vallès), Catalonia, Spain; CSIC, Global Ecology Unit, CREAF-CSIC-UAB, E08193 Bellaterra (Cerdanyola del Vallès), Catalonia, Spain
| | - J Peñuelas
- CREAF, E08193 Bellaterra (Cerdanyola del Vallès), Catalonia, Spain; CSIC, Global Ecology Unit, CREAF-CSIC-UAB, E08193 Bellaterra (Cerdanyola del Vallès), Catalonia, Spain
| | - C Preece
- IRTA, Torre Marimón, Caldes de Montbui, Catalonia, Spain
| | - F Sabater
- BEECA-UB, Department of Evolutionary Biology, Ecology and Environmental Sciences, University of Barcelona, E08028 Barcelona, Catalonia, Spain
| | - M Fernández-Martínez
- CREAF, E08193 Bellaterra (Cerdanyola del Vallès), Catalonia, Spain; CSIC, Global Ecology Unit, CREAF-CSIC-UAB, E08193 Bellaterra (Cerdanyola del Vallès), Catalonia, Spain; Delegació de la Serralada Litoral Central, ICHN, Barcelona, Catalonia, Spain; BEECA-UB, Department of Evolutionary Biology, Ecology and Environmental Sciences, University of Barcelona, E08028 Barcelona, Catalonia, Spain
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3
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Bergman ME, Dudareva N. Plant specialized metabolism: Diversity of terpene synthases and their products. CURRENT OPINION IN PLANT BIOLOGY 2024; 81:102607. [PMID: 39053147 DOI: 10.1016/j.pbi.2024.102607] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Revised: 05/29/2024] [Accepted: 07/02/2024] [Indexed: 07/27/2024]
Abstract
Terpenoids are ubiquitous to all kingdoms of life and are one of the most diverse groups of compounds, both structurally and functionally. Despite being derived from common precursors, isopentenyl diphosphate and dimethylallyl diphosphate, their exceptional diversity is partly driven by the substrate and product promiscuity of terpene synthases that produce a wide array of terpene skeletons. Plant terpene synthases can be subdivided into different subfamilies based on sequence homology and function. However, in many cases, structural architecture of the enzyme is more essential to product specificity than primary sequence alone, and distantly related terpene synthases can often mediate similar reactions. As such, the focus of this brief review is on some of the recent progress in understanding terpene synthase function and diversity.
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Affiliation(s)
- Matthew E Bergman
- Department of Biochemistry, Purdue University, 175 South University St., West Lafayette, IN 47907, USA; Purdue Center for Plant Biology, Purdue University, West Lafayette, IN 47907, USA
| | - Natalia Dudareva
- Department of Biochemistry, Purdue University, 175 South University St., West Lafayette, IN 47907, USA; Purdue Center for Plant Biology, Purdue University, West Lafayette, IN 47907, USA; Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907, USA.
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Weraduwage SM, Whitten D, Kulke M, Sahu A, Vermaas JV, Sharkey TD. The isoprene-responsive phosphoproteome provides new insights into the putative signalling pathways and novel roles of isoprene. PLANT, CELL & ENVIRONMENT 2024; 47:1099-1117. [PMID: 38038355 DOI: 10.1111/pce.14776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Revised: 10/30/2023] [Accepted: 11/18/2023] [Indexed: 12/02/2023]
Abstract
Many plants, especially trees, emit isoprene in a highly light- and temperature-dependent manner. The advantages for plants that emit, if any, have been difficult to determine. Direct effects on membranes have been disproven. New insights have been obtained by RNA sequencing, proteomic and metabolomic studies. We determined the responses of the phosphoproteome to exposure of Arabidopsis leaves to isoprene in the gas phase for either 1 or 5 h. Isoprene effects that were not apparent from RNA sequencing and other methods but were apparent in the phosphoproteome include effects on chloroplast movement proteins and membrane remodelling proteins. Several receptor kinases were found to have altered phosphorylation levels. To test whether potential isoprene receptors could be identified, we used molecular dynamics simulations to test for proteins that might have strong binding to isoprene and, therefore might act as receptors. Although many Arabidopsis proteins were found to have slightly higher binding affinities than a reference set of Homo sapiens proteins, no specific receptor kinase was found to have a very high binding affinity. The changes in chloroplast movement, photosynthesis capacity and so forth, found in this work, are consistent with isoprene responses being especially useful in the upper canopy of trees.
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Affiliation(s)
- Sarathi M Weraduwage
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, Michigan, USA
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan, USA
- Departments of Biology and Biochemistry, Bishop's University, Sherbrooke, Quebec, Canada
| | - Douglas Whitten
- Research Technology Support Facility-Proteomics Core, Michigan State University, East Lansing, Michigan, USA
| | - Martin Kulke
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, Michigan, USA
- School of Natural Sciences, Technische Universität München, Munich, Germany
| | - Abira Sahu
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, Michigan, USA
- Plant Resilience Institute, Michigan State University, East Lansing, Michigan, USA
| | - Josh V Vermaas
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, Michigan, USA
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan, USA
| | - Thomas D Sharkey
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, Michigan, USA
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan, USA
- Plant Resilience Institute, Michigan State University, East Lansing, Michigan, USA
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5
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Kawakami T, Miyazaki S, Kawaide H. Molecular characterization of a moss isoprene synthase provides insight into its evolution. FEBS Lett 2023; 597:2133-2142. [PMID: 37385722 DOI: 10.1002/1873-3468.14691] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Revised: 06/12/2023] [Accepted: 06/16/2023] [Indexed: 07/01/2023]
Abstract
This is the first report on the molecular characterization of isoprene synthase (ISPS) from the moss Calohypnum plumiforme. After isoprene emission from C. plumiforme was confirmed, the cDNA encoding C. plumiforme ISPS (CpISPS) was narrowed down using a genome database associated with protein structure prediction, and a CpISPS gene was identified. The recombinant CpISPS, produced in Escherichia coli, converted dimethylallyl diphosphate to isoprene. Phylogenetic analysis indicated similarity between the amino acid sequences of CpISPS and moss diterpene cyclases (DTCs) but not ISPSs of higher plants, implying that CpISPS is derived from moss DTCs and is evolutionarily unrelated to canonical ISPSs of higher plants. CpISPS is a novel class I cyclase of the terpene synthase-c subfamily harboring αβ domains. This study will help further study of isoprene biosynthesis and the physiological functions of isoprene in mosses.
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Affiliation(s)
- Tetsuya Kawakami
- Graduate School of Agriculture, Tokyo University of Agriculture and Technology (TUAT), Fuchu, Japan
| | - Sho Miyazaki
- Institute of Global Innovation Research, Tokyo University of Agriculture and Technology (TUAT), Fuchu, Japan
| | - Hiroshi Kawaide
- Graduate School of Agriculture, Tokyo University of Agriculture and Technology (TUAT), Fuchu, Japan
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Männistö E, Ylänne H, Losoi M, Keinänen M, Yli-Pirilä P, Korrensalo A, Bäck J, Hellén H, Virtanen A, Tuittila ES. Emissions of biogenic volatile organic compounds from adjacent boreal fen and bog as impacted by vegetation composition. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 858:159809. [PMID: 36336039 DOI: 10.1016/j.scitotenv.2022.159809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Revised: 10/24/2022] [Accepted: 10/25/2022] [Indexed: 06/16/2023]
Abstract
Peatland ecosystems emit biogenic volatile organic compounds (BVOC), which have a net cooling impact on the climate. However, the quality and quantity of BVOC emissions, and how they are regulated by vegetation and peatland type remain poorly understood. Here we measured BVOC emissions with dynamic enclosures from two major boreal peatland types, a minerotrophic fen and an ombrotrophic bog situated in Siikaneva, southern Finland and experimentally assessed the role of vegetation by removing vascular vegetation with or without the moss layer. Our measurements from four campaigns during growing seasons in 2017 and 2018 identified emissions of 59 compounds from nine different chemical groups. Isoprene accounted for 81 % of BVOC emissions. Measurements also revealed uptake of dichloromethane. Total BVOC emissions and the emissions of isoprene, monoterpenoids, sesquiterpenes, homoterpenes, and green leaf volatiles were tightly connected to vascular plants. Isoprene and sesquiterpene emissions were associated with sedges, whereas monoterpenoids and homoterpenes were associated with shrubs. Additionally, isoprene and alkane emissions were higher in the fen than in the bog and they significantly contributed to the higher BVOC emissions from intact vegetation in the fen. During an extreme drought event in 2018, emissions of organic halides were absent. Our results indicate that climate change with an increase in shrub cover and increased frequency of extreme weather events may have a negative impact on total BVOC emissions that otherwise are predicted to increase in warmer temperatures. However, these changes also accompanied a change in BVOC emission quality. As different compounds differ in their capacity to form secondary organic aerosols, the ultimate climate impact of peatland BVOC emissions may be altered.
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Affiliation(s)
- Elisa Männistö
- Peatland and Soil Ecology Research Group, School of Forest Sciences, University of Eastern Finland, P.O. Box 111, 80101 Joensuu, Finland.
| | - Henni Ylänne
- Peatland and Soil Ecology Research Group, School of Forest Sciences, University of Eastern Finland, P.O. Box 111, 80101 Joensuu, Finland; Centre for Environmental and Climate Science, Lund University, Sölvegatan 37, 22362 Lund, Sweden
| | - Mari Losoi
- Department of Environmental and Biological Sciences, University of Eastern Finland, P.O. Box 1627, 70211 Kuopio, Finland
| | - Markku Keinänen
- Department of Environmental and Biological Sciences, University of Eastern Finland, P.O. Box 111, 80101 Joensuu, Finland
| | - Pasi Yli-Pirilä
- Department of Environmental and Biological Sciences, University of Eastern Finland, P.O. Box 1627, 70211 Kuopio, Finland
| | - Aino Korrensalo
- Department of Environmental and Biological Sciences, University of Eastern Finland, P.O. Box 111, 80101 Joensuu, Finland; Natural Resources Institute Finland (Luke), Yliopistokatu 6B, 80100 Joensuu, Finland
| | - Jaana Bäck
- Institute for Atmospheric and Earth System Research (INAR)/Forest Sciences, Faculty of Agriculture and Forestry, University of Helsinki, P.O. Box 64, 00014 Helsinki, Finland
| | - Heidi Hellén
- Finnish Meteorological Institute, PL 503, 00101 Helsinki, Finland
| | - Annele Virtanen
- Department of Applied Physics, University of Eastern Finland, P.O. Box 1627, 70211 Kuopio, Finland
| | - Eeva-Stiina Tuittila
- Peatland and Soil Ecology Research Group, School of Forest Sciences, University of Eastern Finland, P.O. Box 111, 80101 Joensuu, Finland
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7
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Weraduwage SM, Sahu A, Kulke M, Vermaas JV, Sharkey TD. Characterization of promoter elements of isoprene-responsive genes and the ability of isoprene to bind START domain transcription factors. PLANT DIRECT 2023; 7:e483. [PMID: 36742092 PMCID: PMC9889695 DOI: 10.1002/pld3.483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Accepted: 01/12/2023] [Indexed: 06/18/2023]
Abstract
Isoprene has recently been proposed to be a signaling molecule that can enhance tolerance of both biotic and abiotic stress. Not all plants make isoprene, but all plants tested to date respond to isoprene. We hypothesized that isoprene interacts with existing signaling pathways rather than requiring novel mechanisms for its effect on plants. We analyzed the cis-regulatory elements (CREs) in promoters of isoprene-responsive genes and the corresponding transcription factors binding these promoter elements to obtain clues about the transcription factors and other proteins involved in isoprene signaling. Promoter regions of isoprene-responsive genes were characterized using the Arabidopsis cis-regulatory element database. CREs bind ARR1, Dof, DPBF, bHLH112, GATA factors, GT-1, MYB, and WRKY transcription factors, and light-responsive elements were overrepresented in promoters of isoprene-responsive genes; CBF-, HSF-, WUS-binding motifs were underrepresented. Transcription factors corresponding to CREs overrepresented in promoters of isoprene-responsive genes were mainly those important for stress responses: drought-, salt/osmotic-, oxidative-, herbivory/wounding and pathogen-stress. More than half of the isoprene-responsive genes contained at least one binding site for TFs of the class IV (homeodomain leucine zipper) HD-ZIP family, such as GL2, ATML1, PDF2, HDG11, ATHB17. While the HD-zipper-loop-zipper (ZLZ) domain binds to the L1 box of the promoter region, a special domain called the steroidogenic acute regulatory protein-related lipid transfer, or START domain, can bind ligands such as fatty acids (e.g., linolenic and linoleic acid). We tested whether isoprene might bind in such a START domain. Molecular simulations and modeling to test interactions between isoprene and a class IV HD-ZIP family START-domain-containing protein were carried out. Without membrane penetration by the HDG11 START domain, isoprene within the lipid bilayer was inaccessible to this domain, preventing protein interactions with membrane bound isoprene. The cross-talk between isoprene-mediated signaling and other growth regulator and stress signaling pathways, in terms of common CREs and transcription factors could enhance the stability of the isoprene emission trait when it evolves in a plant but so far it has not been possible to say what how isoprene is sensed to initiate signaling responses.
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Affiliation(s)
- Sarathi M Weraduwage
- MSU-DOE Plant Research Laboratory Michigan State University East Lansing Michigan USA
- Department of Biochemistry and Molecular Biology Michigan State University East Lansing Michigan USA
- Great Lakes Bioenergy Research Center Michigan State University East Lansing Michigan USA
| | - Abira Sahu
- MSU-DOE Plant Research Laboratory Michigan State University East Lansing Michigan USA
| | - Martin Kulke
- MSU-DOE Plant Research Laboratory Michigan State University East Lansing Michigan USA
- Department of Biochemistry and Molecular Biology Michigan State University East Lansing Michigan USA
| | - Josh V Vermaas
- MSU-DOE Plant Research Laboratory Michigan State University East Lansing Michigan USA
- Department of Biochemistry and Molecular Biology Michigan State University East Lansing Michigan USA
| | - Thomas D Sharkey
- MSU-DOE Plant Research Laboratory Michigan State University East Lansing Michigan USA
- Department of Biochemistry and Molecular Biology Michigan State University East Lansing Michigan USA
- Great Lakes Bioenergy Research Center Michigan State University East Lansing Michigan USA
- Plant Resilience Institute Michigan State University East Lansing Michigan USA
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8
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Morales-Sánchez JÁM, Mark K, Souza JPS, Niinemets Ü. Desiccation-rehydration measurements in bryophytes: current status and future insights. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:4338-4361. [PMID: 35536655 DOI: 10.1093/jxb/erac172] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2021] [Accepted: 04/27/2022] [Indexed: 06/14/2023]
Abstract
Desiccation-rehydration experiments have been employed over the years to evaluate desiccation tolerance of bryophytes (Bryophyta, Marchantiophyta, and Anthocerotophyta). Researchers have applied a spectrum of protocols to induce desiccation and subsequent rehydration, and a wide variety of techniques have been used to study desiccation-dependent changes in bryophyte molecular, cellular, physiological, and structural traits, resulting in a multifaceted assortment of information that is challenging to synthesize. We analysed 337 desiccation-rehydration studies, providing information for 351 species, to identify the most frequent methods used, analyse the advances in desiccation studies over the years, and characterize the taxonomic representation of the species assessed. We observed certain similarities across methodologies, but the degree of convergence among the experimental protocols was surprisingly low. Out of 52 bryophyte orders, 40% have not been studied, and data are lacking for multiple remote or difficult to access locations. We conclude that for quantitative interspecific comparisons of desiccation tolerance, rigorous standardization of experimental protocols and measurement techniques, and simultaneous use of an array of experimental techniques are required for a mechanistic insight into the different traits modified in response to desiccation. New studies should also aim to fill gaps in taxonomic, ecological, and spatial coverage of bryophytes.
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Affiliation(s)
- José Ángel M Morales-Sánchez
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Fr. R. Kreutzwaldi 5, Tartu 51006, Estonia
| | - Kristiina Mark
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Fr. R. Kreutzwaldi 5, Tartu 51006, Estonia
| | - João Paulo S Souza
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Fr. R. Kreutzwaldi 5, Tartu 51006, Estonia
| | - Ülo Niinemets
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Fr. R. Kreutzwaldi 5, Tartu 51006, Estonia
- Estonian Academy of Sciences, Kohtu 6, Tallinn 10130, Estonia
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9
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Brennan DL, Kollar LM, Kiel S, Deakova T, Laguerre A, McDaniel SF, Eppley SM, Gall ET, Rosenstiel TN. Measuring volatile emissions from moss gametophytes: A review of methodologies and new applications. APPLICATIONS IN PLANT SCIENCES 2022; 10:e11468. [PMID: 35495197 PMCID: PMC9039793 DOI: 10.1002/aps3.11468] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/15/2021] [Revised: 01/19/2022] [Accepted: 01/31/2022] [Indexed: 06/14/2023]
Abstract
Mosses inhabit nearly all terrestrial ecosystems and engage in important interactions with nitrogen-fixing microbes, sperm-dispersing arthropods, and other plants. It is hypothesized that these interactions could be mediated by biogenic volatile organic compounds (BVOCs). Moss BVOCs may play fundamental roles in influencing local ecologies, such as biosphere-atmosphere-hydrosphere communications, physiological and evolutionary dynamics, plant-microbe interactions, and gametophyte stress physiology. Further progress in quantifying the composition, magnitude, and variability of moss BVOC emissions, and their response to environmental drivers and metabolic requirements, is limited by methodological and analytical challenges. We review several sampling techniques with various analytical approaches and describe best practices in generating moss gametophyte BVOC measures. We emphasize the importance of characterizing the composition and magnitude of moss BVOC emissions across a variety of species to better inform and stimulate important cross-disciplinary studies. We conclude by highlighting how current methods could be employed, as well as best practices for choosing methodologies.
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Affiliation(s)
- Danlyn L. Brennan
- Maseeh College of Engineering and Computer SciencePortland State UniversityPortlandOregonUSA
| | - Leslie M. Kollar
- Department of Plant BiologyMichigan State UniversityEast LansingMichiganUSA
| | - Scott Kiel
- Center for Life in Extreme EnvironmentsPortland State UniversityPortlandOregonUSA
| | - Timea Deakova
- Center for Life in Extreme EnvironmentsPortland State UniversityPortlandOregonUSA
| | - Aurélie Laguerre
- Maseeh College of Engineering and Computer SciencePortland State UniversityPortlandOregonUSA
| | | | - Sarah M. Eppley
- Center for Life in Extreme EnvironmentsPortland State UniversityPortlandOregonUSA
| | - Elliott T. Gall
- Maseeh College of Engineering and Computer SciencePortland State UniversityPortlandOregonUSA
| | - Todd N. Rosenstiel
- Center for Life in Extreme EnvironmentsPortland State UniversityPortlandOregonUSA
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10
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Brilli F, Dani KGS, Pasqualini S, Costarelli A, Cannavò S, Paolocci F, Zittelli GC, Mugnai G, Baraldi R, Loreto F. Exposure to different light intensities affects emission of volatiles and accumulations of both pigments and phenolics in Azolla filiculoides. PHYSIOLOGIA PLANTARUM 2022; 174:e13619. [PMID: 34988977 PMCID: PMC9305523 DOI: 10.1111/ppl.13619] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2021] [Accepted: 12/03/2021] [Indexed: 06/01/2023]
Abstract
Many agronomic trials demonstrated the nitrogen-fixing ability of the ferns Azolla spp. and its obligate cyanobiont Trichormus azollae. In this study, we have screened the emission of volatile organic compounds (VOCs) and analyzed pigments (chlorophylls, carotenoids) as well as phenolic compounds in Azolla filiculoides-T. azollae symbionts exposed to different light intensities. Our results revealed VOC emission mainly comprising isoprene and methanol (~82% and ~13% of the overall blend, respectively). In particular, by dissecting VOC emission from A. filiculoides and T. azollae, we found that the cyanobacterium does not emit isoprene, whereas it relevantly contributes to the methanol flux. Enhanced isoprene emission capacity (15.95 ± 2.95 nmol m-2 s-1 ), along with increased content of both phenolic compounds and carotenoids, was measured in A. filiculoides grown for long-term under high (700 μmol m-2 s-1 ) rather than medium (400 μmol m-2 s-1 ) and low (100 μmol m-2 s-1 ) light intensity. Moreover, light-responses of chlorophyll fluorescence demonstrated that A. filiculoides was able to acclimate to high growth light. However, exposure of A. filiculoides from low (100 μmol m-2 s-1 ) to very high light (1000 μmol m-2 s-1 ) did not affect, in the short term, photosynthesis, but slightly decreased isoprene emission and leaf pigment content whereas, at the same time, dramatically raised the accumulation of phenolic compounds (i.e. deoxyanthocyanidins and phlobaphenes). Our results highlight a coordinated photoprotection mechanism consisting of isoprene emission and phenolic compounds accumulation employed by A. filiculoides to cope with increasing light intensities.
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Affiliation(s)
- Federico Brilli
- Institute for Sustainable Plant Protection (IPSP)National Research Council of Italy (CNR)Sesto FiorentinoItaly
| | - K. G. Srikanta Dani
- Institute for Sustainable Plant Protection (IPSP)National Research Council of Italy (CNR)Sesto FiorentinoItaly
| | - Stefania Pasqualini
- Department of Chemistry, Biology and BiotechnologyUniversity of PerugiaPerugiaItaly
| | - Alma Costarelli
- Department of Chemistry, Biology and BiotechnologyUniversity of PerugiaPerugiaItaly
| | - Sara Cannavò
- Department of Chemistry, Biology and BiotechnologyUniversity of PerugiaPerugiaItaly
| | - Francesco Paolocci
- Institute of Biosciences and BioResources (IBBR)National Research Council of Italy (CNR)PerugiaItaly
| | | | - Gianmarco Mugnai
- Institute of BioEconomy (IBE)National Research Council of Italy (CNR)Sesto FiorentinoItaly
| | - Rita Baraldi
- Institute of BioEconomy (IBE)National Research Council of Italy (CNR)BolognaItaly
| | - Francesco Loreto
- Institute for Sustainable Plant Protection (IPSP)National Research Council of Italy (CNR)Sesto FiorentinoItaly
- Department of BiologyThe University of Naples Federico IINaplesItaly
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11
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Frank L, Wenig M, Ghirardo A, van der Krol A, Vlot AC, Schnitzler JP, Rosenkranz M. Isoprene and β-caryophyllene confer plant resistance via different plant internal signalling pathways. PLANT, CELL & ENVIRONMENT 2021; 44:1151-1164. [PMID: 33522606 DOI: 10.1111/pce.14010] [Citation(s) in RCA: 49] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Revised: 01/23/2021] [Accepted: 01/26/2021] [Indexed: 05/12/2023]
Abstract
Isoprene and other terpenoids are important biogenic volatile organic compounds in terms of atmospheric chemistry. Isoprene can aid plant performance under abiotic stresses, but the fundamental biological reasons for the high emissions are not completely understood. Here, we provide evidence of a previously unrecognized ecological function for isoprene and for the sesquiterpene, ß-caryophyllene. We show that isoprene and ß-caryophyllene act as core components of plant signalling networks, inducing resistance against microbial pathogens in neighbouring plants. We challenged Arabidopsis thaliana with Pseudomonas syringae, after exposure to pure volatile terpenoids or to volatile emissions of transformed poplar or Arabidopsis plants. The data suggest that isoprene induces a defence response in receiver plants that is similar to that elicited by monoterpenes and depended on salicylic acid (SA) signalling. In contrast, the sesquiterpene, ß-caryophyllene, induced resistance via jasmonic acid (JA)-signalling. The experiments in an open environment show that natural biological emissions are enough to induce resistance in neighbouring Arabidopsis. Our results show that both isoprene and ß-caryophyllene function as allelochemical components in complex plant signalling networks. Knowledge of this system may be used to boost plant immunity against microbial pathogens in various crop management schemes.
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Affiliation(s)
- Lena Frank
- Helmholtz Zentrum München, Institute of Biochemical Plant Pathology, Research Unit Environmental Simulation, Neuherberg, Germany
| | - Marion Wenig
- Helmholtz Zentrum München, Institute of Biochemical Plant Pathology, Neuherberg, Germany
| | - Andrea Ghirardo
- Helmholtz Zentrum München, Institute of Biochemical Plant Pathology, Research Unit Environmental Simulation, Neuherberg, Germany
| | | | - A Corina Vlot
- Helmholtz Zentrum München, Institute of Biochemical Plant Pathology, Neuherberg, Germany
| | - Jörg-Peter Schnitzler
- Helmholtz Zentrum München, Institute of Biochemical Plant Pathology, Research Unit Environmental Simulation, Neuherberg, Germany
| | - Maaria Rosenkranz
- Helmholtz Zentrum München, Institute of Biochemical Plant Pathology, Research Unit Environmental Simulation, Neuherberg, Germany
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12
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Source of 12C in Calvin-Benson cycle intermediates and isoprene emitted from plant leaves fed with 13CO2. Biochem J 2021; 477:3237-3252. [PMID: 32815532 DOI: 10.1042/bcj20200480] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2020] [Revised: 08/12/2020] [Accepted: 08/20/2020] [Indexed: 12/11/2022]
Abstract
Feeding 14CO2 was crucial to uncovering the path of carbon in photosynthesis. Feeding 13CO2 to photosynthesizing leaves emitting isoprene has been used to develop hypotheses about the sources of carbon for the methylerythritol 4-phosphate pathway, which makes the precursors for terpene synthesis in chloroplasts and bacteria. Both photosynthesis and isoprene studies found that products label very quickly (<10 min) up to 80-90% but the last 10-20% of labeling requires hours indicating a source of 12C during photosynthesis and isoprene emission. Furthermore, studies with isoprene showed that the proportion of slow label could vary significantly. This was interpreted as a variable contribution of carbon from sources other than the Calvin-Benson cycle (CBC) feeding the methylerythritol 4-phosphate pathway. Here, we measured the degree of label in isoprene and photosynthetic metabolites 20 min after beginning to feed 13CO2. Isoprene labeling was the same as labeling of photosynthesis intermediates. High temperature reduced the label in isoprene and photosynthesis intermediates by the same amount indicating no role for alternative carbon sources for isoprene. A model assuming glucose, fructose, and/or sucrose reenters the CBC as ribulose 5-phosphate through a cytosolic shunt involving glucose 6-phosphate dehydrogenase was consistent with the observations.
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13
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Leaf isoprene emission as a trait that mediates the growth-defense tradeoff in the face of climate stress. Oecologia 2021; 197:885-902. [PMID: 33420520 DOI: 10.1007/s00442-020-04813-7] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2020] [Accepted: 12/01/2020] [Indexed: 12/27/2022]
Abstract
Plant isoprene emissions are known to contribute to abiotic stress tolerance, especially during episodes of high temperature and drought, and during cellular oxidative stress. Recent studies have shown that genetic transformations to add or remove isoprene emissions cause a cascade of cellular modifications that include known signaling pathways, and interact to remodel adaptive growth-defense tradeoffs. The most compelling evidence for isoprene signaling is found in the shikimate and phenylpropanoid pathways, which produce salicylic acid, alkaloids, tannins, anthocyanins, flavonols and other flavonoids; all of which have roles in stress tolerance and plant defense. Isoprene also influences key gene expression patterns in the terpenoid biosynthetic pathways, and the jasmonic acid, gibberellic acid and cytokinin signaling networks that have important roles in controlling inducible defense responses and influencing plant growth and development, particularly following defoliation. In this synthesis paper, using past studies of transgenic poplar, tobacco and Arabidopsis, we present the evidence for isoprene acting as a metabolite that coordinates aspects of cellular signaling, resulting in enhanced chemical defense during periods of climate stress, while minimizing costs to growth. This perspective represents a major shift in our thinking away from direct effects of isoprene, for example, by changing membrane properties or quenching ROS, to indirect effects, through changes in gene expression and protein abundances. Recognition of isoprene's role in the growth-defense tradeoff provides new perspectives on evolution of the trait, its contribution to plant adaptation and resilience, and the ecological niches in which it is most effective.
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14
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Separating direct and indirect effects of rising temperatures on biogenic volatile emissions in the Arctic. Proc Natl Acad Sci U S A 2020; 117:32476-32483. [PMID: 33257556 PMCID: PMC7768730 DOI: 10.1073/pnas.2008901117] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Abstract
Plants release to the atmosphere reactive gases, so-called volatile organic compounds (VOCs). The release of VOCs from vegetation is temperature-dependent and controlled by vegetation composition because different plant species release a distinct blend of VOCs. We used modelling approaches on ecosystem VOC release data collected across the Arctic, which is experiencing both rapid warming and vegetation changes. We show that warming strongly stimulates release of plant-derived VOCs and that vegetation changes also increase VOC release, albeit less than temperature directly, and with large geographic differences in the Pan-Arctic area. The increasing VOC flux from the Arctic tundra to the atmosphere may have implications via climate feedbacks, for example, through particle and cloud formation in these regions with low anthropogenic influence. Volatile organic compounds (VOCs) are released from biogenic sources in a temperature-dependent manner. Consequently, Arctic ecosystems are expected to greatly increase their VOC emissions with ongoing climate warming, which is proceeding at twice the rate of global temperature rise. Here, we show that ongoing warming has strong, increasing effects on Arctic VOC emissions. Using a combination of statistical modeling on data from several warming experiments in the Arctic tundra and dynamic ecosystem modeling, we separate the impacts of temperature and soil moisture into direct effects and indirect effects through vegetation composition and biomass alterations. The indirect effects of warming on VOC emissions were significant but smaller than the direct effects, during the 14-y model simulation period. Furthermore, vegetation changes also cause shifts in the chemical speciation of emissions. Both direct and indirect effects result in large geographic differences in VOC emission responses in the warming Arctic, depending on the local vegetation cover and the climate dynamics. Our results outline complex links between local climate, vegetation, and ecosystem–atmosphere interactions, with likely local-to-regional impacts on the atmospheric composition.
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15
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Carrión O, McGenity TJ, Murrell JC. Molecular Ecology of Isoprene-Degrading Bacteria. Microorganisms 2020; 8:E967. [PMID: 32605141 PMCID: PMC7409078 DOI: 10.3390/microorganisms8070967] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Revised: 06/16/2020] [Accepted: 06/25/2020] [Indexed: 01/08/2023] Open
Abstract
Isoprene is a highly abundant biogenic volatile organic compound (BVOC) that is emitted to the atmosphere in amounts approximating to those of methane. The effects that isoprene has on Earth's climate are both significant and complex, however, unlike methane, very little is known about the biological degradation of this environmentally important trace gas. Here, we review the mechanisms by which bacteria catabolise isoprene, what is known about the diversity of isoprene degraders in the environment, and the molecular tools currently available to study their ecology. Specifically, we focus on the use of probes based on the gene encoding the α-subunit of isoprene monooxygenase, isoA, and DNA stable-isotope probing (DNA-SIP) alone or in combination with other cultivation-independent techniques to determine the abundance, diversity, and activity of isoprene degraders in the environment. These parameters are essential in order to evaluate how microbes might mitigate the effects of this important but neglected climate-active gas. We also suggest key aspects of isoprene metabolism that require further investigation in order to better understand the global isoprene biogeochemical cycle.
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Affiliation(s)
- Ornella Carrión
- School of Environmental Sciences, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, UK
| | - Terry J. McGenity
- School of Life Sciences, University of Essex, Colchester CO4 3SQ, UK;
| | - J. Colin Murrell
- School of Environmental Sciences, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, UK
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16
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Murrell JC, McGenity TJ, Crombie AT. Microbial metabolism of isoprene: a much-neglected climate-active gas. MICROBIOLOGY-SGM 2020; 166:600-613. [PMID: 32441612 PMCID: PMC7657509 DOI: 10.1099/mic.0.000931] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
The climate-active gas isoprene is the major volatile produced by a variety of trees and is released into the atmosphere in enormous quantities, on a par with global emissions of methane. While isoprene production in plants and its effect on atmospheric chemistry have received considerable attention, research into the biological isoprene sink has been neglected until recently. Here, we review current knowledge on the sources and sinks of isoprene and outline its environmental effects. Focusing on degradation by microbes, many of which are able to use isoprene as the sole source of carbon and energy, we review recent studies characterizing novel isoprene degraders isolated from soils, marine sediments and in association with plants. We describe the development and use of molecular methods to identify, quantify and genetically characterize isoprene-degrading strains in environmental samples. Finally, this review identifies research imperatives for the further study of the environmental impact, ecology, regulation and biochemistry of this interesting group of microbes.
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Affiliation(s)
- J Colin Murrell
- School of Environmental Sciences, University of East Anglia, Norwich, NR4 7TJ, UK
| | - Terry J McGenity
- School of Life Sciences, University of Essex, Wivenhoe Park, Colchester, CO4 3SQ, UK
| | - Andrew T Crombie
- School of Biological Sciences, University of East Anglia, Norwich, NR4 7TJ, UK
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17
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Zhang-Turpeinen H, Kivimäenpää M, Aaltonen H, Berninger F, Köster E, Köster K, Menyailo O, Prokushkin A, Pumpanen J. Wildfire effects on BVOC emissions from boreal forest floor on permafrost soil in Siberia. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 711:134851. [PMID: 32000328 DOI: 10.1016/j.scitotenv.2019.134851] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2019] [Revised: 09/28/2019] [Accepted: 10/04/2019] [Indexed: 06/10/2023]
Abstract
One of the effects of climate change on boreal forest will be more frequent forest wildfires and permafrost thawing. These will increase the availability of soil organic matter (SOM) for microorganisms, change the ground vegetation composition and ultimately affect the emissions of biogenic volatile organic compounds (BVOCs), which impact atmospheric chemistry and climate. BVOC emissions from boreal forest floor have been little characterized in southern boreal region, and even less so in permafrost soil, which underlies most of the northern boreal region. Here, we report the long-term effects of wildfire on forest floor BVOC emission rates along a wildfire chronosequence in a Larix gmelinii forest in central Siberia. We determined forest floor BVOC emissions from forests exposed to wildfire 1, 23 and > 100 years ago. We studied how forest wildfires and the subsequent succession of ground vegetation, as well as changes in the availability of SOM along with the deepened and recovered active layer, influence BVOC emission rates. The forest floor acted as source of a large number of BVOCs in all forest age classes. Monoterpenes were the most abundant BVOC group in all age classes. The total BVOC emission rates measured from the 23- and >100-year-old areas were ca. 2.6 times higher than the emissions from the 1-year-old area. Lower emissions were related to a decrease in plant coverage and microbial decomposition of SOM after wildfire. Our results showed that forest wildfires play an important indirect role in regulating the amount and composition of BVOC emissions from post-fire originated boreal forest floor. This could have a substantial effect on BVOC emissions if the frequency of forest wildfires increases in the future as a result of climate warming.
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Affiliation(s)
- Huizhong Zhang-Turpeinen
- Department of Environmental and Biological Sciences, P.O.Box 1627, FI-70211 Kuopio, University of Eastern Finland, Finland.
| | - Minna Kivimäenpää
- Department of Environmental and Biological Sciences, P.O.Box 1627, FI-70211 Kuopio, University of Eastern Finland, Finland
| | - Heidi Aaltonen
- Department of Forest Sciences, P.O. Box 27, FI-00014 Helsinki, University of Helsinki, Finland
| | - Frank Berninger
- Department of Environmental and Biological Sciences, P.O.Box 111, FI-80101 Joensuu, University of Eastern Finland, Finland
| | - Egle Köster
- Department of Forest Sciences, P.O. Box 27, FI-00014 Helsinki, University of Helsinki, Finland; Institute for Atmospheric and Earth System Research/ Forest sciences, Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, Finland
| | - Kajar Köster
- Department of Forest Sciences, P.O. Box 27, FI-00014 Helsinki, University of Helsinki, Finland; Institute for Atmospheric and Earth System Research/ Forest sciences, Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, Finland
| | | | | | - Jukka Pumpanen
- Department of Environmental and Biological Sciences, P.O.Box 1627, FI-70211 Kuopio, University of Eastern Finland, Finland
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18
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Lehnert AS, Perreca E, Gershenzon J, Pohnert G, Trumbore SE. Simultaneous Real-Time Measurement of Isoprene and 2-Methyl-3-Buten-2-ol Emissions From Trees Using SIFT-MS. FRONTIERS IN PLANT SCIENCE 2020; 11:578204. [PMID: 33329639 PMCID: PMC7728719 DOI: 10.3389/fpls.2020.578204] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Accepted: 11/04/2020] [Indexed: 05/12/2023]
Abstract
The C5 hemiterpenes isoprene and 2-methyl-3-buten-2-ol (MBO) are important biogenic volatiles emitted from terrestrial vegetation. Isoprene is emitted from many plant groups, especially trees such as Populus, while emission of MBO is restricted to certain North American conifers, including species of Pinus. MBO is also a pheromone emitted by several conifer bark beetles. Both isoprene and MBO have typically been measured by proton-transfer reaction mass spectrometry (PTR-MS), but this method cannot accurately distinguish between them because of their signal overlap. Our study developed a method for using selective ion flow tube mass spectrometry (SIFT-MS) that allows simultaneous on-line measurement of isoprene and MBO by employing different reagent ions. The use of m/z(NO+) = 68 u for isoprene and m/z(O2 +) = 71 u for MBO gave minimal interference between the compounds. We tested the suitability of the method by measuring the emission of young trees of Populus, Picea, and Pinus. Our results largely confirm previous findings that Populus nigra, Picea glauca, and Picea abies emit isoprene and Pinus ponderosa emits MBO, but we also found MBO to be emitted by Picea abies. Thus SIFT-MS provides a reliable, easy to use, on-line measuring tool to distinguish between isoprene and MBO. The method should be of use to atmospheric chemists, tree physiologists and forest entomologists, among others.
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Affiliation(s)
- Ann-Sophie Lehnert
- Department of Biogeochemical Processes, Max Planck Institute for Biogeochemistry, Jena, Germany
- Institute for Inorganic and Analytical Chemistry, Bioorganic Analytics, Friedrich Schiller University, Jena, Germany
- *Correspondence: Ann-Sophie Lehnert,
| | - Erica Perreca
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Jonathan Gershenzon
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Georg Pohnert
- Institute for Inorganic and Analytical Chemistry, Bioorganic Analytics, Friedrich Schiller University, Jena, Germany
| | - Susan E. Trumbore
- Department of Biogeochemical Processes, Max Planck Institute for Biogeochemistry, Jena, Germany
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19
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Lantz AT, Allman J, Weraduwage SM, Sharkey TD. Isoprene: New insights into the control of emission and mediation of stress tolerance by gene expression. PLANT, CELL & ENVIRONMENT 2019; 42:2808-2826. [PMID: 31350912 PMCID: PMC6788959 DOI: 10.1111/pce.13629] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2019] [Revised: 07/19/2019] [Accepted: 07/21/2019] [Indexed: 05/10/2023]
Abstract
Isoprene is a volatile compound produced in large amounts by some, but not all, plants by the enzyme isoprene synthase. Plants emit vast quantities of isoprene, with a net global output of 600 Tg per year, and typical emission rates from individual plants around 2% of net carbon assimilation. There is significant debate about whether global climate change resulting from increasing CO2 in the atmosphere will increase or decrease global isoprene emission in the future. We show evidence supporting predictions of increased isoprene emission in the future, but the effects could vary depending on the environment under consideration. For many years, isoprene was believed to have immediate, physical effects on plants such as changing membrane properties or quenching reactive oxygen species. Although observations sometimes supported these hypotheses, the effects were not always observed, and the reasons for the variability were not apparent. Although there may be some physical effects, recent studies show that isoprene has significant effects on gene expression, the proteome, and the metabolome of both emitting and nonemitting species. Consistent results are seen across species and specific treatment protocols. This review summarizes recent findings on the role and control of isoprene emission from plants.
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Affiliation(s)
- Alexandra T. Lantz
- MSU-DOE Plant Research Laboratory, Department of Biochemistry and Molecular Biology, East Lansing, MI, United States
| | - Joshua Allman
- MSU-DOE Plant Research Laboratory, Department of Biochemistry and Molecular Biology, East Lansing, MI, United States
| | - Sarathi M. Weraduwage
- MSU-DOE Plant Research Laboratory, Department of Biochemistry and Molecular Biology, East Lansing, MI, United States
| | - Thomas D. Sharkey
- MSU-DOE Plant Research Laboratory, Department of Biochemistry and Molecular Biology, East Lansing, MI, United States
- Great Lakes Bioenergy Research Center, Madison, MI, United States
- Plant Resilience Institute, Michigan State University, East Lansing, MI, United States
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20
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Taylor TC, Smith MN, Slot M, Feeley KJ. The capacity to emit isoprene differentiates the photosynthetic temperature responses of tropical plant species. PLANT, CELL & ENVIRONMENT 2019; 42:2448-2457. [PMID: 30993708 DOI: 10.1111/pce.13564] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2019] [Revised: 04/08/2019] [Accepted: 04/12/2019] [Indexed: 05/07/2023]
Abstract
Experimental research shows that isoprene emission by plants can improve photosynthetic performance at high temperatures. But whether species that emit isoprene have higher thermal limits than non-emitting species remains largely untested. Tropical plants are adapted to narrow temperature ranges and global warming could result in significant ecosystem restructuring due to small variations in species' thermal tolerances. We compared photosynthetic temperature responses of 26 co-occurring tropical tree and liana species to test whether isoprene-emitting species are more tolerant to high temperatures. We classified species as isoprene emitters versus non-emitters based on published datasets. Maximum temperatures for net photosynthesis were ~1.8°C higher for isoprene-emitting species than for non-emitters, and thermal response curves were 24% wider; differences in optimum temperatures (Topt ) or photosynthetic rates at Topt were not significant. Modelling the carbon cost of isoprene emission, we show that even strong emission rates cause little reduction in the net carbon assimilation advantage over non-emitters at supraoptimal temperatures. Isoprene emissions may alleviate biochemical limitations, which together with stomatal conductance, co-limit photosynthesis above Topt . Our findings provide evidence that isoprene emission may be an adaptation to warmer thermal niches, and that emitting species may fare better under global warming than co-occurring non-emitting species.
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Affiliation(s)
- Tyeen C Taylor
- Department of Biological Sciences, University of Miami, Coral Gables, FL
| | - Marielle N Smith
- Department of Forestry, Michigan State University, East Lansing, MI
| | - Martijn Slot
- Smithsonian Tropical Research Institute, Balboa, Republic of Panama
| | - Kenneth J Feeley
- Department of Biological Sciences, University of Miami, Coral Gables, FL
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21
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Mäki M, Aalto J, Hellén H, Pihlatie M, Bäck J. Interannual and Seasonal Dynamics of Volatile Organic Compound Fluxes From the Boreal Forest Floor. FRONTIERS IN PLANT SCIENCE 2019; 10:191. [PMID: 30853968 PMCID: PMC6395408 DOI: 10.3389/fpls.2019.00191] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/26/2018] [Accepted: 02/05/2019] [Indexed: 06/09/2023]
Abstract
In the northern hemisphere, boreal forests are a major source of biogenic volatile organic compounds (BVOCs), which drive atmospheric processes and lead to cloud formation and changes in the Earth's radiation budget. Although forest vegetation is known to be a significant source of BVOCs, the role of soil and the forest floor, and especially interannual variations in fluxes, remains largely unknown due to a lack of long-term measurements. Our aim was to determine the interannual, seasonal and diurnal dynamics of boreal forest floor volatile organic compound (VOC) fluxes and to estimate how much they contribute to ecosystem VOC fluxes. We present here an 8-year data set of forest floor VOC fluxes, measured with three automated chambers connected to the quadrupole proton transfer reaction mass spectrometer (quadrupole PTR-MS). The exceptionally long data set shows that forest floor fluxes were dominated by monoterpenes and methanol, with relatively comparable emission rates between the years. Weekly mean monoterpene fluxes from the forest floor were highest in spring and in autumn (maximum 59 and 86 μg m-2 h-1, respectively), whereas the oxygenated VOC fluxes such as methanol had highest weekly mean fluxes in spring and summer (maximum 24 and 79 μg m-2 h-1, respectively). Although the chamber locations differed from each other in emission rates, the inter-annual dynamics were very similar and systematic. Accounting for this chamber location dependent variability, temperature and relative humidity, a mixed effects linear model was able to explain 79-88% of monoterpene, methanol, acetone, and acetaldehyde fluxes from the boreal forest floor. The boreal forest floor was a significant contributor in the forest stand fluxes, but its importance varies between seasons, being most important in autumn. The forest floor emitted 2-93% of monoterpene fluxes in spring and autumn and 1-72% of methanol fluxes in spring and early summer. The forest floor covered only a few percent of the forest stand fluxes in summer.
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Affiliation(s)
- Mari Mäki
- Institute for Atmospheric and Earth System Research/Forest Sciences, Helsinki, Finland
- Department of Forest Sciences, Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, Finland
| | - Juho Aalto
- Institute for Atmospheric and Earth System Research/Forest Sciences, Helsinki, Finland
- Department of Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
| | - Heidi Hellén
- Finnish Meteorological Institute, Helsinki, Finland
| | - Mari Pihlatie
- Institute for Atmospheric and Earth System Research/Forest Sciences, Helsinki, Finland
- Department of Agricultural Sciences, Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, Finland
- Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
| | - Jaana Bäck
- Institute for Atmospheric and Earth System Research/Forest Sciences, Helsinki, Finland
- Department of Forest Sciences, Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, Finland
- Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
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22
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Fernández-Martínez M, Llusià J, Filella I, Niinemets Ü, Arneth A, Wright IJ, Loreto F, Peñuelas J. Nutrient-rich plants emit a less intense blend of volatile isoprenoids. THE NEW PHYTOLOGIST 2018; 220:773-784. [PMID: 29120052 PMCID: PMC6345376 DOI: 10.1111/nph.14889] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2017] [Accepted: 10/16/2017] [Indexed: 05/04/2023]
Abstract
The emission of isoprenoids (e.g. isoprene and monoterpenes) by plants plays an important defensive role against biotic and abiotic stresses. Little is known, however, about the functional traits linked to species-specific variability in the types and rates of isoprenoids emitted and about possible co-evolution of functional traits with isoprenoid emission type (isoprene emitter, monoterpene emitter or both). We combined data for isoprene and monoterpene emission rates per unit dry mass with key functional traits (foliar nitrogen (N) and phosphorus (P) concentrations, and leaf mass per area) and climate for 113 plant species, covering the boreal, wet temperate, Mediterranean and tropical biomes. Foliar N was positively correlated with isoprene emission, and foliar P was negatively correlated with both isoprene and monoterpene emission rate. Nonemitting plants generally had the highest nutrient concentrations, and those storing monoterpenes had the lowest concentrations. Our phylogenetic analyses found that the type of isoprenoid emission followed an adaptive, rather than a random model of evolution. Evolution of isoprenoids may be linked to nutrient availability. Foliar N and P are good predictors of the type of isoprenoid emission and the rate at which monoterpenes, and to a lesser extent isoprene, are emitted.
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Affiliation(s)
- Marcos Fernández-Martínez
- Centre of Excellence PLECO (Plant and Vegetation Ecology),
Department of Biology, University of Antwerp, 2610 Wilrijk, Belgium
- CSIC, Global Ecology Unit, CREAF-CEAB-CSIC-UAB, Bellaterra, 08193
Barcelona, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, 08193 Barcelona, Catalonia,
Spain
| | - Joan Llusià
- CSIC, Global Ecology Unit, CREAF-CEAB-CSIC-UAB, Bellaterra, 08193
Barcelona, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, 08193 Barcelona, Catalonia,
Spain
| | - Iolanda Filella
- CSIC, Global Ecology Unit, CREAF-CEAB-CSIC-UAB, Bellaterra, 08193
Barcelona, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, 08193 Barcelona, Catalonia,
Spain
| | - Ülo Niinemets
- Estonian University of Life Sciences, Institute of Agricultural and
Environmental Sciences, 1 Kreutzwaldi, Tartu 51014, Estonia
- Estonian Academy of Sciences, Kohtu 6, 10130 Tallinn, Estonia
| | - Almut Arneth
- Karlsruhe Institute of Technology, Atmospheric Environmental
Research, Kreuzeckbahnstr. 19, 82467 Garmisch-Partenkirchen, Germany
| | - Ian J. Wright
- Department of Biological Sciences, Macquarie University, NSW 2109,
Australia
| | - Francesco Loreto
- National Research Council of Italy, Department of Biology,
Agriculture and Food Sciences (CNR-DISBA), Piazzale Aldo Moro 7, Rome, Italy
| | - Josep Peñuelas
- CSIC, Global Ecology Unit, CREAF-CEAB-CSIC-UAB, Bellaterra, 08193
Barcelona, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, 08193 Barcelona, Catalonia,
Spain
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23
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Li M, Xu J, Algarra Alarcon A, Carlin S, Barbaro E, Cappellin L, Velikova V, Vrhovsek U, Loreto F, Varotto C. In Planta Recapitulation of Isoprene Synthase Evolution from Ocimene Synthases. Mol Biol Evol 2017; 34:2583-2599. [PMID: 28637270 PMCID: PMC5850473 DOI: 10.1093/molbev/msx178] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
Isoprene is the most abundant biogenic volatile hydrocarbon compound naturally emitted by plants and plays a major role in atmospheric chemistry. It has been proposed that isoprene synthases (IspS) may readily evolve from other terpene synthases, but this hypothesis has not been experimentally investigated. We isolated and functionally validated in Arabidopsis the first isoprene synthase gene, AdoIspS, from a monocotyledonous species (Arundo donax L., Poaceae). Phylogenetic reconstruction indicates that AdoIspS and dicots isoprene synthases most likely originated by parallel evolution from TPS-b monoterpene synthases. Site-directed mutagenesis demonstrated invivo the functional and evolutionary relevance of the residues considered diagnostic for IspS function. One of these positions was identified by saturating mutagenesis as a major determinant of substrate specificity in AdoIspS able to cause invivo a dramatic change in total volatile emission from hemi- to monoterpenes and supporting evolution of isoprene synthases from ocimene synthases. The mechanism responsible for IspS neofunctionalization by active site size modulation by a single amino acid mutation demonstrated in this study might be general, as the very same amino acidic position is implicated in the parallel evolution of different short-chain terpene synthases from both angiosperms and gymnosperms. Based on these results, we present a model reconciling in a unified conceptual framework the apparently contrasting patterns previously observed for isoprene synthase evolution in plants. These results indicate that parallel evolution may be driven by relatively simple biophysical constraints, and illustrate the intimate molecular evolutionary links between the structural and functional bases of traits with global relevance.
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Affiliation(s)
- Mingai Li
- Department of Biodiversity and Molecular Ecology, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige (TN), Italy
| | - Jia Xu
- Department of Biodiversity and Molecular Ecology, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige (TN), Italy
- Dipartimento di Biologia, Università di Padova, Padova, Italy
| | - Alberto Algarra Alarcon
- Department of Food Quality and Nutrition, Research and Innovation Centre, San Michele all’Adige (TN), Italy
- Institute of Ecology, University of Innsbruck, Innsbruck, Austria
| | - Silvia Carlin
- Department of Food Quality and Nutrition, Research and Innovation Centre, San Michele all’Adige (TN), Italy
| | - Enrico Barbaro
- Department of Biodiversity and Molecular Ecology, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige (TN), Italy
| | - Luca Cappellin
- Department of Food Quality and Nutrition, Research and Innovation Centre, San Michele all’Adige (TN), Italy
| | - Violeta Velikova
- Department of Biodiversity and Molecular Ecology, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige (TN), Italy
- Institute of Plant Physiology and Genetics, Bulgarian Academy of Sciences, Sofia, Bulgaria
| | - Urska Vrhovsek
- Department of Food Quality and Nutrition, Research and Innovation Centre, San Michele all’Adige (TN), Italy
| | - Francesco Loreto
- Department of Biology, Agriculture and Food Sciences, The National Research Council of Italy (CNR), Rome, Italy
| | - Claudio Varotto
- Department of Biodiversity and Molecular Ecology, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige (TN), Italy
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24
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Svendsen SH, Lindwall F, Michelsen A, Rinnan R. Biogenic volatile organic compound emissions along a high arctic soil moisture gradient. THE SCIENCE OF THE TOTAL ENVIRONMENT 2016; 573:131-138. [PMID: 27552736 DOI: 10.1016/j.scitotenv.2016.08.100] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2016] [Revised: 08/12/2016] [Accepted: 08/15/2016] [Indexed: 06/06/2023]
Abstract
Emissions of biogenic volatile organic compounds (BVOCs) from terrestrial ecosystems are important for the atmospheric chemistry and the formation of secondary organic aerosols, and may therefore influence the climate. Global warming is predicted to change patterns in precipitation and plant species compositions, especially in arctic regions where the temperature increase will be most pronounced. These changes are potentially highly important for the BVOC emissions but studies investigating the effects are lacking. The aim of this study was to investigate the quality and quantity of BVOC emissions from a high arctic soil moisture gradient extending from dry tundra to a wet fen. Ecosystem BVOC emissions were sampled five times in the July-August period using a push-pull enclosure technique, and BVOCs trapped in absorbent cartridges were analyzed using gas chromatography-mass spectrometry. Plant species compositions were estimated using the point intercept method. In order to take into account important underlying ecosystem processes, gross ecosystem production, ecosystem respiration and net ecosystem production were measured in connection with chamber-based BVOC measurements. Highest emissions of BVOCs were found from vegetation communities dominated by Salix arctica and Cassiope tetragona, which had emission profiles dominated by isoprene and monoterpenes, respectively. These results show that emissions of BVOCs are highly dependent on the plant cover supported by the varying soil moisture, suggesting that high arctic BVOC emissions may affect the climate differently if soil water content and plant cover change.
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Affiliation(s)
- Sarah Hagel Svendsen
- Terrestrial Ecology Section, Department of Biology, University of Copenhagen, Universitetsparken 15, DK -2100 Copenhagen E, Denmark; Center for Permafrost (CENPERM), Department of Geoscience and Natural Resource Management, University of Copenhagen, Øster Voldgade 10, DK -1350 Copenhagen K, Denmark
| | - Frida Lindwall
- Terrestrial Ecology Section, Department of Biology, University of Copenhagen, Universitetsparken 15, DK -2100 Copenhagen E, Denmark; Center for Permafrost (CENPERM), Department of Geoscience and Natural Resource Management, University of Copenhagen, Øster Voldgade 10, DK -1350 Copenhagen K, Denmark
| | - Anders Michelsen
- Terrestrial Ecology Section, Department of Biology, University of Copenhagen, Universitetsparken 15, DK -2100 Copenhagen E, Denmark; Center for Permafrost (CENPERM), Department of Geoscience and Natural Resource Management, University of Copenhagen, Øster Voldgade 10, DK -1350 Copenhagen K, Denmark
| | - Riikka Rinnan
- Terrestrial Ecology Section, Department of Biology, University of Copenhagen, Universitetsparken 15, DK -2100 Copenhagen E, Denmark; Center for Permafrost (CENPERM), Department of Geoscience and Natural Resource Management, University of Copenhagen, Øster Voldgade 10, DK -1350 Copenhagen K, Denmark.
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25
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Yamori W. Photosynthetic response to fluctuating environments and photoprotective strategies under abiotic stress. JOURNAL OF PLANT RESEARCH 2016; 129:379-95. [PMID: 27023791 DOI: 10.1007/s10265-016-0816-1] [Citation(s) in RCA: 109] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2016] [Accepted: 03/06/2016] [Indexed: 05/18/2023]
Abstract
Plants in natural environments must cope with diverse, highly dynamic, and unpredictable conditions. They have mechanisms to enhance the capture of light energy when light intensity is low, but they can also slow down photosynthetic electron transport to prevent the production of reactive oxygen species and consequent damage to the photosynthetic machinery under excess light. Plants need a highly responsive regulatory system to balance the photosynthetic light reactions with downstream metabolism. Various mechanisms of regulation of photosynthetic electron transport under stress have been proposed, however the data have been obtained mainly under environmentally stable and controlled conditions. Thus, our understanding of dynamic modulation of photosynthesis under dramatically fluctuating natural environments remains limited. In this review, first I describe the magnitude of environmental fluctuations under natural conditions. Next, I examine the effects of fluctuations in light intensity, CO2 concentration, leaf temperature, and relative humidity on dynamic photosynthesis. Finally, I summarize photoprotective strategies that allow plants to maintain the photosynthesis under stressful fluctuating environments. The present work clearly showed that fluctuation in various environmental factors resulted in reductions in photosynthetic rate in a stepwise manner at every environmental fluctuation, leading to the conclusion that fluctuating environments would have a large impact on photosynthesis.
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Affiliation(s)
- Wataru Yamori
- Department of Biological Sciences, Graduate School of Science, The University of Tokyo, 7‑3‑1 Hongo, Bunkyo‑ku, Tokyo, 113-0033, Japan.
- Precursory Research for Embryonic Science and Technology (PRESTO), Japan Science and Technology Agency (JST), 4-1-8 Honcho, Kawaguchi, Saitama, 332-0012, Japan.
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26
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Courtois EA, Dexter KG, Paine CET, Stien D, Engel J, Baraloto C, Chave J. Evolutionary patterns of volatile terpene emissions across 202 tropical tree species. Ecol Evol 2016; 6:2854-64. [PMID: 27069586 PMCID: PMC4803801 DOI: 10.1002/ece3.1810] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2015] [Accepted: 10/04/2015] [Indexed: 11/25/2022] Open
Abstract
Plant responses to natural enemies include formation of secondary metabolites acting as direct or indirect defenses. Volatile terpenes represent one of the most diverse groups of secondary metabolites. We aimed to explore evolutionary patterns of volatile terpene emission. We measured the composition of damage‐induced volatile terpenes from 202 Amazonian tree species, spanning the angiosperm phylogeny. Volatile terpenes were extracted with solid‐phase micro extraction and desorbed in a gas chromatography–mass spectrometry for compound identification. The chemical diversity of the terpene blend showed a strong phylogenetic signal as closely related species emitted a similar number of compounds. Closely related species also tended to have compositionally similar blends, although this relationship was weak. Meanwhile, the ability to emit a given compound showed no significant phylogenetic signal for 200 of 286 compounds, indicating a high rate of diversification in terpene synthesis and/or great variability in their expression. Three lineages (Magnoliales, Laurales, and Sapindales) showed exceptionally high rates of terpene diversification. Of the 70 compounds found in >10% of their species, 69 displayed significant correlated evolution with at least one other compound. These results provide insights into the complex evolutionary history of volatile terpenes in angiosperms, while highlighting the need for further research into this important class of compounds.
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Affiliation(s)
- Elodie A Courtois
- CNRS Guyane USR 34562, Avenue Gustave Charlery 97300 Cayenne France; Laboratoire Evolution et Diversité Biologique UMR 5174 CNRS/Université Paul Sabatier 118, route de Narbonne 31062 Toulouse France; CNRS, UMR Ecofog Université Antilles Guyane BP 70997387 Kourou Cedex France
| | - Kyle G Dexter
- Laboratoire Evolution et Diversité Biologique UMR 5174 CNRS/Université Paul Sabatier 118, route de Narbonne 31062 Toulouse France; School of GeoSciences University of Edinburgh Edinburgh EH9 3FFUK; Royal Botanic Garden Edinburgh 20a Inverleith Row Edinburgh EH3 5LR UK
| | | | - Didier Stien
- CNRS, UMR Ecofog Université Antilles Guyane BP 70997387 Kourou Cedex France; Laboratoire de Biodiversité et Biotechnologies Microbiennes (LBBM) Observatoire Océanologique Sorbonne Universités, UPMC Univ Paris 06, CNRS 66650 Banyuls-sur-mer France
| | - Julien Engel
- INRA UMR Ecofog BP 701 97387 Kourou Cedex France
| | - Christopher Baraloto
- INRAUMR Ecofog BP 70197387 Kourou Cedex France; International Center for Tropical Botany Department of Biological Sciences Florida International University Miami Florida 33199
| | - Jérôme Chave
- Laboratoire Evolution et Diversité Biologique UMR 5174 CNRS/Université Paul Sabatier 118, route de Narbonne 31062 Toulouse France
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27
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Weston DJ, Timm CM, Walker AP, Gu L, Muchero W, Schmutz J, Shaw AJ, Tuskan GA, Warren JM, Wullschleger SD. Sphagnum physiology in the context of changing climate: emergent influences of genomics, modelling and host-microbiome interactions on understanding ecosystem function. PLANT, CELL & ENVIRONMENT 2015; 38:1737-1751. [PMID: 25266403 DOI: 10.1111/pce.12458] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2014] [Revised: 09/16/2014] [Accepted: 09/18/2014] [Indexed: 06/03/2023]
Abstract
Peatlands harbour more than one-third of terrestrial carbon leading to the argument that the bryophytes, as major components of peatland ecosystems, store more organic carbon in soils than any other collective plant taxa. Plants of the genus Sphagnum are important components of peatland ecosystems and are potentially vulnerable to changing climatic conditions. However, the response of Sphagnum to rising temperatures, elevated CO2 and shifts in local hydrology have yet to be fully characterized. In this review, we examine Sphagnum biology and ecology and explore the role of this group of keystone species and its associated microbiome in carbon and nitrogen cycling using literature review and model simulations. Several issues are highlighted including the consequences of a variable environment on plant-microbiome interactions, uncertainty associated with CO2 diffusion resistances and the relationship between fixed N and that partitioned to the photosynthetic apparatus. We note that the Sphagnum fallax genome is currently being sequenced and outline potential applications of population-level genomics and corresponding plant photosynthesis and microbial metabolic modelling techniques. We highlight Sphagnum as a model organism to explore ecosystem response to a changing climate and to define the role that Sphagnum can play at the intersection of physiology, genetics and functional genomics.
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Affiliation(s)
- David J Weston
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Collin M Timm
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Anthony P Walker
- Environmental Sciences Division and Climate Change Science Institute, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Lianhong Gu
- Environmental Sciences Division and Climate Change Science Institute, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Wellington Muchero
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Jeremy Schmutz
- Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA
- HudsonAlpha Institute of Biotechnology, Huntsville, AL, 35806, USA
| | - A Jonathan Shaw
- Department of Biology, Duke University, Durham, NC, 27708, USA
| | - Gerald A Tuskan
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Jeffrey M Warren
- Environmental Sciences Division and Climate Change Science Institute, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Stan D Wullschleger
- Environmental Sciences Division and Climate Change Science Institute, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
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28
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Lantz AT, Cardiello JF, Gee TA, Richards MG, Rosenstiel TN, Fisher AJ. Biochemical characterization of an isoprene synthase from Campylopus introflexus (heath star moss). PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2015; 94:209-15. [PMID: 26113160 DOI: 10.1016/j.plaphy.2015.06.008] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2015] [Revised: 05/29/2015] [Accepted: 06/08/2015] [Indexed: 05/25/2023]
Abstract
Each year, plants emit terragram quantities of the reactive hydrocarbon isoprene (2-methyl-1,3-butadiene) into the earth's atmosphere. In isoprene-emitting plants, the enzyme isoprene synthase (ISPS) catalyzes the production of isoprene from the isoprenoid intermediate dimethylallyl diphosphate (DMADP). While isoprene is emitted from all major classes of land plants, to date ISPSs from angiosperms only have been characterized. Here, we report the identification and initial biochemical characterization of a DMADP-dependent ISPS from the isoprene-emitting bryophyte Campylopus introflexus (heath star moss). The partially-purified C. introflexus ISPS (CiISPS) exhibited a Km for DMADP of 0.37 ± 0.28 mM, a pH optimum of 8.6 ± 0.5, and a temperature optimum of 40 ± 3 °C in vitro. Like ISPSs from angiosperms, the CiISPS required the presence of a divalent cation. However, unlike angiosperm ISPSs, the CiISPS utilized Mn(2+) preferentially over Mg(2+). Efforts are currently underway in our laboratory to further purify the CiISPS and clone the cDNA sequence encoding this novel enzyme. Our discovery of the first bryophyte ISPS paves the way for future studies concerning the evolutionary origins of isoprene emission in land plants and may help generate new bryophyte model systems for physiological and biochemical research on plant isoprene function.
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Affiliation(s)
- Alexandra T Lantz
- Department of Chemistry, Willamette University, Salem, OR 97301, USA.
| | | | - Taylor A Gee
- Department of Chemistry, Willamette University, Salem, OR 97301, USA
| | | | - Todd N Rosenstiel
- Department of Biology, Portland State University, Portland, OR 97207, USA.
| | - Alison J Fisher
- Department of Chemistry, Willamette University, Salem, OR 97301, USA.
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29
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Rehman R, Hanif MA, Mushtaq Z, Al-Sadi AM. Biosynthesis of essential oils in aromatic plants: A review. FOOD REVIEWS INTERNATIONAL 2015. [DOI: 10.1080/87559129.2015.1057841] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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30
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Loreto F, Fineschi S. Reconciling functions and evolution of isoprene emission in higher plants. THE NEW PHYTOLOGIST 2015; 206:578-82. [PMID: 25557381 DOI: 10.1111/nph.13242] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2014] [Accepted: 11/13/2014] [Indexed: 05/09/2023]
Abstract
Compilation and analysis of existing inventories reveal that isoprene is emitted by c. 20% of the perennial vegetation of tropical and temperate regions of the world. Isoprene emitters are found across different plant families without any clear phylogenetic thread. However, by critically appraising information in inventories, several ecological patterns of isoprene emission can be highlighted, including absence of emission from C4 and annual plants, and widespread emission from perennial and deciduous plants of temperate environments. Based on this analysis, and on available information on biochemistry, ecology and functional roles of isoprene, it is suggested that isoprene may not have evolved to help plants face heavy or prolonged stresses, but rather assists C3 plants to run efficient photosynthesis and to overcome transient and mild stresses, especially during periods of active plant growth in warm seasons. When the stress status persists, or when evergreen leaves cope with multiple and repeated stresses, isoprene biosynthesis is replaced by the synthesis of less volatile secondary compounds, in part produced by the same biochemical pathway, thus indicating causal determinism in the evolution of isoprene-emitting plants in response to the environment.
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Affiliation(s)
- Francesco Loreto
- Department of Biology, Agriculture and Food Sciences, The National Research Council of Italy (CNR), P. le Aldo Moro 7, Roma, 00185, Italy
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31
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Rinnan R, Steinke M, McGenity T, Loreto F. Plant volatiles in extreme terrestrial and marine environments. PLANT, CELL & ENVIRONMENT 2014; 37:1776-89. [PMID: 24601952 DOI: 10.1111/pce.12320] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2013] [Accepted: 02/26/2014] [Indexed: 05/15/2023]
Abstract
This review summarizes the current understanding on plant and algal volatile organic compound (VOC) production and emission in extreme environments, where temperature, water availability, salinity or other environmental factors pose stress on vegetation. Here, the extreme environments include terrestrial systems, such as arctic tundra, deserts, CO₂ springs and wetlands, and marine systems such as sea ice, tidal rock pools and hypersaline environments, with mangroves and salt marshes at the land-sea interface. The emission potentials at fixed temperature and light level or actual emission rates for phototrophs in extreme environments are frequently higher than for organisms from less stressful environments. For example, plants from the arctic tundra appear to have higher emission potentials for isoprenoids than temperate species, and hypersaline marine habitats contribute to global dimethyl sulphide (DMS) emissions in significant amounts. DMS emissions are more widespread than previously considered, for example, in salt marshes and some desert plants. The reason for widespread VOC, especially isoprenoid, emissions from different extreme environments deserves further attention, as these compounds may have important roles in stress resistance and adaptation to extremes. Climate warming is likely to significantly increase VOC emissions from extreme environments both by direct effects on VOC production and volatility, and indirectly by altering the composition of the vegetation.
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Affiliation(s)
- Riikka Rinnan
- Terrestrial Ecology Section, Department of Biology, University of Copenhagen, Copenhagen Ø, DK-2100, Denmark; Centre for Permafrost (CENPERM), University of Copenhagen, Copenhagen K, DK-1350, Denmark
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32
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Dani KGS, Jamie IM, Prentice IC, Atwell BJ. Evolution of isoprene emission capacity in plants. TRENDS IN PLANT SCIENCE 2014; 19:439-46. [PMID: 24582468 DOI: 10.1016/j.tplants.2014.01.009] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2013] [Revised: 01/06/2014] [Accepted: 01/15/2014] [Indexed: 05/21/2023]
Abstract
Light-dependent de novo volatile isoprene emission by terrestrial plants (approximately 2% of carbon fixed during photosynthesis) contributes as much as 0.5 PgC/year to the global carbon cycle. Although most plant taxa exhibit either constitutive or inducible monoterpene emissions, the evolution of isoprene emission capacity in multiple lineages has remained unexplained. Based on the predominant occurrence of isoprene emission capacity in long-lived, fast-growing woody plants; the relationship between 'metabolic scope' of tree genera and their species richness; and the proposed role of high growth rates and long generation times in accelerating molecular evolution, we hypothesise that long-lived plant genera with inherently high speciation rates have repeatedly acquired and lost the capacity to emit isoprene in their evolutionary history.
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Affiliation(s)
- K G Srikanta Dani
- Department of Biological Sciences, Macquarie University, North Ryde, Sydney, NSW 2109, Australia; Department of Chemistry and Biomolecular Sciences, Macquarie University, North Ryde, Sydney, NSW 2109, Australia
| | - Ian M Jamie
- Department of Chemistry and Biomolecular Sciences, Macquarie University, North Ryde, Sydney, NSW 2109, Australia
| | - I Colin Prentice
- Department of Biological Sciences, Macquarie University, North Ryde, Sydney, NSW 2109, Australia; Grantham Institute for Climate Change, and Division of Biology, Imperial College London, Silwood Park, Ascot SL5 7PY, UK
| | - Brian J Atwell
- Department of Biological Sciences, Macquarie University, North Ryde, Sydney, NSW 2109, Australia.
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33
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Graham L, Lewis LA, Taylor W, Wellman C, Cook M. Early Terrestrialization: Transition from Algal to Bryophyte Grade. ACTA ACUST UNITED AC 2013. [DOI: 10.1007/978-94-007-6988-5_2] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/20/2023]
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34
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Biological and Chemical Diversity of Biogenic Volatile Organic Emissions into the Atmosphere. ACTA ACUST UNITED AC 2013. [DOI: 10.1155/2013/786290] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Biogenic volatile organic compounds (BVOC) emitted by terrestrial ecosystems into the atmosphere play an important role in determining atmospheric constituents including the oxidants and aerosols that control air quality and climate. Accurate quantitative estimates of BVOC emissions are needed to understand the processes controlling the earth system and to develop effective air quality and climate management strategies. The large uncertainties associated with BVOC emission estimates must be reduced, but this is challenging due to the large number of compounds and biological sources. The information on the immense biological and chemical diversity of BVOC is reviewed with a focus on observations that have been incorporated into the MEGAN2.1 BVOC emission model. Strategies for improving current BVOC emission modeling approaches by better representations of this diversity are presented. The current gaps in the available data for parameterizing emission models and the priorities for future measurements are discussed.
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35
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Sharkey TD. Is it useful to ask why plants emit isoprene? PLANT, CELL & ENVIRONMENT 2013; 36:517-20. [PMID: 23145535 DOI: 10.1111/pce.12038] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2012] [Accepted: 11/05/2012] [Indexed: 05/07/2023]
Affiliation(s)
- Thomas D Sharkey
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA.
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36
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Monson RK, Jones RT, Rosenstiel TN, Schnitzler JP. Why only some plants emit isoprene. PLANT, CELL & ENVIRONMENT 2013; 36:503-16. [PMID: 22998549 DOI: 10.1111/pce.12015] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Isoprene (2-methyl-1,3-butadiene) is emitted from many plants and it appears to have an adaptive role in protecting leaves from abiotic stress. However, only some species emit isoprene. Isoprene emission has appeared and been lost many times independently during the evolution of plants. As an example, our phylogenetic analysis shows that isoprene emission is likely ancestral within the family Fabaceae (= Leguminosae), but that it has been lost at least 16 times and secondarily gained at least 10 times through independent evolutionary events. Within the division Pteridophyta (ferns), we conservatively estimate that isoprene emissions have been gained five times and lost two times through independent evolutionary events. Within the genus Quercus (oaks), isoprene emissions have been lost from one clade, but replaced by a novel type of light-dependent monoterpene emissions that uses the same metabolic pathways and substrates as isoprene emissions. This novel type of monoterpene emissions has appeared at least twice independently within Quercus, and has been lost from 9% of the individuals within a single population of Quercus suber. Gain and loss of gene function for isoprene synthase is possible through relatively few mutations. Thus, this trait appears frequently in lineages; but, once it appears, the time available for evolutionary radiation into environments that select for the trait is short relative to the time required for mutations capable of producing a non-functional isoprene synthase gene. The high frequency of gains and losses of the trait and its heterogeneous taxonomic distribution in plants may be explained by the relatively few mutations necessary to produce or lose the isoprene synthase gene combined with the assumption that isoprene emission is advantageous in a narrow range of environments and phenotypes.
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Affiliation(s)
- Russell K Monson
- School of Natural Resources and the Environment and Laboratory for Tree Ring Research, University of Arizona, Tucson, AZ 85721, USA.
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37
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Sharkey TD, Gray DW, Pell HK, Breneman SR, Topper L. Isoprene synthase genes form a monophyletic clade of acyclic terpene synthases in the TPS-B terpene synthase family. Evolution 2012; 67:1026-40. [PMID: 23550753 DOI: 10.1111/evo.12013] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Many plants emit significant amounts of isoprene, which is hypothesized to help leaves tolerate short episodes of high temperature. Isoprene emission is found in all major groups of land plants including mosses, ferns, gymnosperms, and angiosperms; however, within these groups isoprene emission is variable. The patchy distribution of isoprene emission implies an evolutionary pattern characterized by many origins or many losses. To better understand the evolution of isoprene emission, we examine the phylogenetic relationships among isoprene synthase and monoterpene synthase genes in the angiosperms. In this study we identify nine new isoprene synthases within the rosid angiosperms. We also document the capacity of a myrcene synthase in Humulus lupulus to produce isoprene. Isoprene synthases and (E)-β-ocimene synthases form a monophyletic group within the Tps-b clade of terpene synthases. No asterid genes fall within this clade. The chemistry of isoprene synthase and ocimene synthase is similar and likely affects the apparent relationships among Tps-b enzymes. The chronology of rosid evolution suggests a Cretaceous origin followed by many losses of isoprene synthase over the course of evolutionary history. The phylogenetic pattern of Tps-b genes indicates that isoprene emission from non-rosid angiosperms likely arose independently.
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Affiliation(s)
- Thomas D Sharkey
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824, USA.
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Beckett M, Loreto F, Velikova V, Brunetti C, Di Ferdinando M, Tattini M, Calfapietra C, Farrant JM. Photosynthetic limitations and volatile and non-volatile isoprenoids in the poikilochlorophyllous resurrection plant Xerophyta humilis during dehydration and rehydration. PLANT, CELL & ENVIRONMENT 2012; 35:2061-74. [PMID: 22582997 DOI: 10.1111/j.1365-3040.2012.02536.x] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
We investigated the photosynthetic limitations occurring during dehydration and rehydration of Xerophyta humilis, a poikilochlorophyllous resurrection plant, and whether volatile and non-volatile isoprenoids might be involved in desiccation tolerance. Photosynthesis declined rapidly after dehydration below 85% relative water content (RWC). Raising intercellular CO(2) concentrations during desiccation suggest that the main photosynthetic limitation was photochemical, affecting energy-dependent RuBP regeneration. Imaging fluorescence confirmed that both the number of photosystem II (PSII) functional reaction centres and their efficiency were impaired under progressive dehydration, and revealed the occurrence of heterogeneous photosynthesis during desiccation, being the basal leaf area more resistant to the stress. Full recovery in photosynthetic parameters occurred on rehydration, confirming that photosynthetic limitations were fully reversible and that no permanent damage occurred. During desiccation, zeaxanthin and lutein increased only when photosynthesis had ceased, implying that these isoprenoids do not directly scavenge reactive oxygen species, but rather protect photosynthetic membranes from damage and consequent denaturation. X. humilis was found to emit isoprene, a volatile isoprenoid that acts as a membrane strengthener in plants. Isoprene emission was stimulated by drought and peaked at 80% RWC. We surmise that isoprene and non-volatile isoprenoids cooperate in reducing membrane damage in X. humilis, isoprene being effective when desiccation is moderate while non-volatile isoprenoids operate when water deficit is more extreme.
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Affiliation(s)
- Megan Beckett
- Department of Molecular and Cell Biology, University of Cape Town, Private Bag, Rondebosch 7701, South Africa
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Velikova V, Sharkey TD, Loreto F. Stabilization of thylakoid membranes in isoprene-emitting plants reduces formation of reactive oxygen species. PLANT SIGNALING & BEHAVIOR 2012; 7:139-41. [PMID: 22301981 PMCID: PMC3357355 DOI: 10.4161/psb.7.1.18521] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Isoprene is emitted by a significant fraction of the world's vegetation. Isoprene makes leaves more thermotolerant, yet we do not fully understand how. We have recently shown that isoprene stabilizes thylakoid membranes under heat stress. Here we show that heat-stressed, isoprene-emitting transgenic Arabidopsis plants also produce a lower pool of reactive oxygen and reactive nitrogen species, and that this was especially due to a lower accumulation of H2O2 in isoprene emitting plants. It remains difficult to disentangle whether in heat stressed plants isoprene also directly reacts with and quenches reactive oxygen species (ROS), or reduces ROS formation by stabilizing thylakoids. We present considerations that make the latter a more likely mechanism, under our experimental circumstances.
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Affiliation(s)
- Violeta Velikova
- Institute of Plant Physiology and Genetics; Bulgarian Academy of Sciences; Sofia, Bulgaria
| | - Thomas D. Sharkey
- Department of Biochemistry and Molecular Biology; Michigan State University; East Lansing, MI USA
| | - Francesco Loreto
- Institute for Plant Protection; National Research Council; Florence, Italy
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Gray DW, Breneman SR, Topper LA, Sharkey TD. Biochemical characterization and homology modeling of methylbutenol synthase and implications for understanding hemiterpene synthase evolution in plants. J Biol Chem 2011; 286:20582-90. [PMID: 21504898 PMCID: PMC3121459 DOI: 10.1074/jbc.m111.237438] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2011] [Revised: 04/13/2011] [Indexed: 11/06/2022] Open
Abstract
2-Methyl-3-buten-2-ol (MBO) is a five-carbon alcohol produced and emitted in large quantities by many species of pine native to western North America. MBO is structurally and biosynthetically related to isoprene and can have an important impact on regional atmospheric chemistry. The gene for MBO synthase was identified from Pinus sabiniana, and the protein encoded was functionally characterized. MBO synthase is a bifunctional enzyme that produces both MBO and isoprene in a ratio of ~90:1. Divalent cations are required for activity, whereas monovalent cations are not. MBO production is enhanced by K(+), whereas isoprene production is inhibited by K(+) such that, at physiologically relevant [K(+)], little or no isoprene emission should be detected from MBO-emitting trees. The K(m) of MBO synthase for dimethylallyl diphosphate (20 mm) is comparable with that observed for angiosperm isoprene synthases and 3 orders of magnitude higher than that observed for monoterpene and sesquiterpene synthases. Phylogenetic analysis showed that MBO synthase falls into the TPS-d1 group (gymnosperm monoterpene synthases) and is most closely related to linalool synthase from Picea abies. Structural modeling showed that up to three phenylalanine residues restrict the size of the active site and may be responsible for making this a hemiterpene synthase rather than a monoterpene synthase. One of these residues is homologous to a Phe residue found in the active site of isoprene synthases. The remaining two Phe residues do not have homologs in isoprene synthases but occupy the same space as a second Phe residue that closes off the isoprene synthase active site.
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Affiliation(s)
- Dennis W. Gray
- From the Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824 and
| | - Steven R. Breneman
- From the Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824 and
| | - Lauren A. Topper
- the Department of Neuroscience, School of Medicine, University of New Mexico, Albuquerque, New Mexico 87131
| | - Thomas D. Sharkey
- From the Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824 and
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Amino Acid Compositional Shifts During Streptophyte Transitions to Terrestrial Habitats. J Mol Evol 2010; 72:204-14. [DOI: 10.1007/s00239-010-9416-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2010] [Accepted: 11/23/2010] [Indexed: 10/18/2022]
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Graham LE, Kim E, Arancibia-Avila P, Graham JM, Wilcox LW. Evolutionary and ecophysiological significance of sugar utilization by the peat moss Sphagnum compactum (Sphagnaceae) and the common charophycean associates Cylindrocystis brebissonii and Mougeotia sp. (Zygnemataceae). AMERICAN JOURNAL OF BOTANY 2010; 97:1485-91. [PMID: 21616902 DOI: 10.3732/ajb.0900341] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
PREMISE OF THE STUDY The goal of this study was to illuminate the evolutionary history and ecological importance of plant mixotrophy-the uptake and utilization of exogenous organic compounds. • METHODS We quantitatively assessed the effect of sugar amendments on laboratory growth of Sphagnum compactum as a representative emergent peat moss and two species of ecologically associated zygnematalean algae, Cylindrocystis brebissonii and Mougeotia sp. • KEY RESULTS Together with observations published elsewhere, our results suggest that under carbon or light limitation, the uptake of exogenous sugars by cells of charophycean algae and peat mosses may help these organisms maintain positive carbon balance. Utilization of 1% glucose by aquatic-grown algae helped to relieve dissolved inorganic carbon limitation, enhancing photoautotrophic growth by factors of 9.0 and 1.7, respectively. After an 8-wk growth period, amendments of 1% and 2% glucose enhanced air-grown moss biomass by 28 and 39 times, respectively, that of controls lacking sugar amendments. After 9 wk, 1% fructose enhanced biomass by 21 times, and 2% sucrose enhanced biomass by 31 times. • CONCLUSION Our results indicate that plant mixotrophy is an early-evolved trait. The results also indicate that quantitative differences in sugar utilization by bryophytes and charophycean algae correlate with relative investments in protective cell-wall polyphenolics measured in previous studies, suggesting that sugar utilization may subsidize the cost of producing phenolic wall compounds in bryophytes.
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Affiliation(s)
- Linda E Graham
- Department of Botany, University of Wisconsin, Madison, Wisconsin, USA 53706-1381
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Schnitzler JP, Louis S, Behnke K, Loivamäki M. Poplar volatiles - biosynthesis, regulation and (eco)physiology of isoprene and stress-induced isoprenoids. PLANT BIOLOGY (STUTTGART, GERMANY) 2010; 12:302-16. [PMID: 20398237 DOI: 10.1111/j.1438-8677.2009.00284.x] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Plants interact with their environment through a wide variety of biogenic volatile organic compounds (BVOCs), with isoprenoids ( identical with terpenes), i.e. isoprene, mono- and sesquiterpenes, playing an important role. Isoprene, a hemiterpene, is the simplest isoprenoid compound mainly emitted by tree species like poplars, oaks and willows. Woody plants alone comprise 75% of the global isoprene emitted to the atmosphere. Due to its significant influence on atmospheric chemistry, research has been focused on this C5 compound, with poplar being the most prominent model system. Recent studies indicate that isoprene can enhance thermotolerance or quench oxidative stress, while also interfering with the attraction of herbivores and parasitoids to plants. In this paper, we report on biosynthesis, regulation and function of isoprene and other stress-induced volatile isoprenoids in poplar, and discuss the future scientific challenges in this genus with respect to the importance of plant volatiles in high-density poplar biomass plantations.
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Affiliation(s)
- J-P Schnitzler
- Karlsruhe Institut for Technologie (KIT), Institut für Meteorologie und Klimaforschung (IMK-IFU), Garmisch-Partenkirchen, Germany.
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Velikova V, Tsonev T, Barta C, Centritto M, Koleva D, Stefanova M, Busheva M, Loreto F. BVOC emissions, photosynthetic characteristics and changes in chloroplast ultrastructure of Platanus orientalis L. exposed to elevated CO2 and high temperature. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2009; 157:2629-2637. [PMID: 19477569 DOI: 10.1016/j.envpol.2009.05.007] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2009] [Revised: 04/27/2009] [Accepted: 05/03/2009] [Indexed: 05/27/2023]
Abstract
To investigate the interactive effects of increasing [CO(2)] and heat wave occurrence on isoprene (IE) and methanol (ME) emissions, Platanus orientalis was grown for one month in ambient (380 micromol mol(-1)) or elevated (800 micromol mol(-1)) [CO(2)] and exposed to high temperature (HT) (38 degrees C/4 h). In pre-existing leaves, IE emissions were always higher but ME emissions lower as compared to newly-emerged leaves. They were both stimulated by HT. Elevated [CO(2)] significantly reduced IE in both leaf types, whereas it increased ME in newly-emerged leaves only. In newly-emerged leaves, elevated [CO(2)] decreased photosynthesis and altered the chloroplast ultrastructure and membrane integrity. These harmful effects were amplified by HT. HT did not cause any unfavorable effects in pre-existing leaves, which were characterized by inherently higher IE rates. We conclude that: (1) these results further prove the isoprene's putative thermo-protective role of membranes; (2) HT may likely outweigh the inhibitory effects of elevated [CO(2)] on IE in the future.
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Affiliation(s)
- Violeta Velikova
- Bulgarian Academy of Sciences, Institute of Plant Physiology, Acad. G. Bonchev, Bl. 21, 1113 Sofia, Bulgaria.
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Tiiva P, Faubert P, Michelsen A, Holopainen T, Holopainen JK, Rinnan R. Climatic warming increases isoprene emission from a subarctic heath. THE NEW PHYTOLOGIST 2008; 180:853-63. [PMID: 18680543 DOI: 10.1111/j.1469-8137.2008.02587.x] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Emissions of isoprene, a reactive hydrocarbon, from Subarctic vegetation are not well documented. However, the Arctic is likely to experience the most pronounced effects of climatic warming, which may increase temperature-dependent isoprene emission. Here, we assessed isoprene emission from a Subarctic heath subjected to a 3-4 degrees C increase in air temperature and mountain birch (Betula pubescens ssp. czerepanovii) litter addition for 7-8 yr, simulating climatic warming and the subsequent expansion of deciduous shrub species and migration of the treeline. The measurements were performed using the dynamic chamber method on a wet heath with a mixture of shrubs, herbs and graminoids. Isoprene emissions averaged across the treatments were 36 +/- 5 microg m(-2) h(-1) in 2006 and 58 +/- 7 microg m(-2) h(-1) in 2007. The experimental warming increased the emissions by 83% in 2007 (P = 0.021) and by 56% in 2006 (P = 0.056), while litter addition had no significant effects. The net ecosystem CO(2) exchange was significantly decreased by warming in 2007. These results show that isoprene emissions from Subarctic heaths are comparable to those from Subarctic peatlands. Climatic warming will increase the emissions, and the amount of carbon lost as isoprene, from Subarctic heath ecosystems.
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Affiliation(s)
- Päivi Tiiva
- Department of Environmental Science, University of Kuopio, PO Box 1627, FI-70211 Kuopio, Finland.
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Tiiva P, Rinnan R, Faubert P, Räsänen J, Holopainen T, Kyrö E, Holopainen JK. Isoprene emission from a subarctic peatland under enhanced UV-B radiation. THE NEW PHYTOLOGIST 2007; 176:346-355. [PMID: 17888116 DOI: 10.1111/j.1469-8137.2007.02164.x] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Isoprene is a reactive hydrocarbon with an important role in atmospheric chemistry, and emissions from vegetation contribute to atmospheric carbon fluxes. The magnitude of isoprene emissions from arctic peatlands is not known, and it may be altered by increasing UV-B radiation. Isoprene emission was measured with the dynamic chamber method from a subarctic peatland under long-term enhancement of UV-B radiation targeted to correspond to a 20% loss in the stratospheric ozone layer. The site type of the peatland was a flark fen dominated by the moss Warnstorfia exannulata and sedges Eriophorum russeolum and Carex limosa. The relationship between species densities and the emission was also assessed. Isoprene emissions were significantly increased by enhanced UV-B radiation during the second (2004) and the fourth (2006) growing seasons under the UV-B exposure. Emissions were related to the density of E. russeolum. The dominant moss, W. exannulata, proved to emit small amounts of isoprene in a laboratory trial. Subarctic fens, even without Sphagnum moss, are a significant source of isoprene to the atmosphere, especially under periods of warm weather. Warming of the Arctic together with enhanced UV-B radiation may substantially increase the emissions.
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Affiliation(s)
- Päivi Tiiva
- Department of Environmental Science, University of Kuopio, PO Box 1627, FI-70211 Kuopio, Finland
| | - Riikka Rinnan
- Department of Environmental Science, University of Kuopio, PO Box 1627, FI-70211 Kuopio, Finland
- Department of Terrestrial Ecology, Institute of Biology, University of Copenhagen, Øster Farimagsgade 2D, DK-1353 Copenhagen K, Denmark
| | - Patrick Faubert
- Department of Environmental Science, University of Kuopio, PO Box 1627, FI-70211 Kuopio, Finland
| | - Janne Räsänen
- Department of Environmental Science, University of Kuopio, PO Box 1627, FI-70211 Kuopio, Finland
| | - Toini Holopainen
- Department of Environmental Science, University of Kuopio, PO Box 1627, FI-70211 Kuopio, Finland
| | - Esko Kyrö
- Finnish Meteorological Institute, Arctic Research Center, FI-99600 Sodankylä, Finland
| | - Jarmo K Holopainen
- Department of Environmental Science, University of Kuopio, PO Box 1627, FI-70211 Kuopio, Finland
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Sharkey TD, Yeh S, Wiberley AE, Falbel TG, Gong D, Fernandez DE. Evolution of the isoprene biosynthetic pathway in kudzu. PLANT PHYSIOLOGY 2005; 137:700-12. [PMID: 15653811 PMCID: PMC1065370 DOI: 10.1104/pp.104.054445] [Citation(s) in RCA: 122] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2004] [Revised: 11/05/2004] [Accepted: 11/08/2004] [Indexed: 05/19/2023]
Abstract
Isoprene synthase converts dimethylallyl diphosphate, derived from the methylerythritol 4-phosphate (MEP) pathway, to isoprene. Isoprene is made by some plants in substantial amounts, which affects atmospheric chemistry, while other plants make no isoprene. As part of our long-term study of isoprene synthesis, the genetics of the isoprene biosynthetic pathway of the isoprene emitter, kudzu (Pueraria montana), was compared with similar genes in Arabidopsis (Arabidopsis thaliana), which does not make isoprene. The MEP pathway genes in kudzu were similar to the corresponding Arabidopsis genes. Isoprene synthase genes of kudzu and aspen (Populus tremuloides) were cloned to compare their divergence with the divergence seen in MEP pathway genes. Phylogenetic analysis of the terpene synthase gene family indicated that isoprene synthases are either within the monoterpene synthase clade or sister to it. In Arabidopsis, the gene most similar to isoprene synthase is a myrcene/ocimene (acyclic monoterpenes) synthase. Two phenylalanine residues found exclusively in isoprene synthases make the active site smaller than other terpene synthase enzymes, possibly conferring specificity for the five-carbon substrate rather than precursors of the larger isoprenoids. Expression of the kudzu isoprene synthase gene in Arabidopsis caused Arabidopsis to emit isoprene, indicating that whether or not a plant emits isoprene depends on whether or not it has a terpene synthase capable of using dimethylallyl diphosphate.
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Affiliation(s)
- Thomas D Sharkey
- Department of Botany, University of Wisconsin, Madison, Wisconsin 53706, USA.
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Sundby C, Härndahl U, Gustavsson N, Ahrman E, Murphy DJ. Conserved methionines in chloroplasts. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2005; 1703:191-202. [PMID: 15680227 DOI: 10.1016/j.bbapap.2004.09.001] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2004] [Revised: 08/24/2004] [Accepted: 09/02/2004] [Indexed: 10/26/2022]
Abstract
Heat shock proteins counteract heat and oxidative stress. In chloroplasts, a small heat shock protein (Hsp21) contains a set of conserved methionines, which date back to early in the emergence of terrestrial plants. Methionines M49, M52, M55, M59, M62, M67 are located on one side of an amphipathic helix, which may fold back over two other conserved methionines (M97 and M101), to form a binding groove lined with methionines, for sequence-independent recognition of peptides with an overall hydrophobic character. The sHsps protect other proteins from aggregation by binding to their hydrophobic surfaces, which become exposed under stress. Data are presented showing that keeping the conserved methionines in Hsp21 in a reduced form is a prerequisite to maintain such binding. The chloroplast generates reactive oxygen species under both stress and unstressed conditions, but this organelle is also a highly reducing cellular compartment. Chloroplasts contain a specialized isoform of the enzyme, peptide methionine sulfoxide reductase, the expression of which is light-induced. Recombinant proteins were used to measure that this reductase can restore Hsp21 methionines after sulfoxidation. This paper also describes how methionine sulfoxidation-reduction can be directly assessed by mass spectrometry, how methionine-to-leucine substitution affects Hsp21, and discusses the possible role for an Hsp21 methionine sulfoxidation-reduction cycle in quenching reactive oxygen species.
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Affiliation(s)
- Cecilia Sundby
- Department of Biochemistry, Center for Chemistry and Chemical Engineering, Lund University, P O Box 124, S-221 00 Lund, Sweden.
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Wiedinmyer C, Guenther A, Harley P, Hewitt N, Geron C, Artaxo P, Steinbrecher R, Rasmussen R. Global Organic Emissions from Vegetation. ADVANCES IN GLOBAL CHANGE RESEARCH 2004. [DOI: 10.1007/978-1-4020-2167-1_4] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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Lerdau M, Gray D. Ecology and evolution of light-dependent and light-independent phytogenic volatile organic carbon. THE NEW PHYTOLOGIST 2003; 157:199-211. [PMID: 33873635 DOI: 10.1046/j.1469-8137.2003.00673.x] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
The low molecular weight hydrocarbons produced by plants form a uniquely exciting group of compounds. Produced by a common biosynthetic route, they play multiple and complex roles in organismal, ecological, and atmospheric processes. While some of these compounds have clearly identified functions within plants, others are made for reasons not yet fully understood. Here, both light-dependent and light-independent emissions are reviewed, together with regulation of production and possible functions of light-dependent volatile organic carbon (VOC). In addition to issues regarding the phylogenetic origins of VOC emissions, the origins of the pivotal enzymes that give rise to the observed emission phenotypes are discussed. Studies on the evolution and regulation of their production and emission provide an amazing opportunity for scientists working from the molecular to the tropospheric scales to interact. Contents Summary 199 I. Introduction 199 II. Light-independent emissions 200 III. Light-dependent emissions 201 IV. Regulation of production 202 V. Possible functions of light-dependent VOCs 204 VI. Evolutionary aspects of phytogenic VOC 206 Acknowledgements 206 References 209.
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Affiliation(s)
- Manuel Lerdau
- Ecology and Evolution, State University of New York, Stony Brook, NY 11794-5245
| | - Dennis Gray
- Ecology and Evolution, State University of New York, Stony Brook, NY 11794-5245
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