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Xu X, Cocco E, Guerriero G, Sergeant K, Jourdan S, Renaut J, Hausman JF, Legay S. Harnessing Apple Cell Suspension Cultures in Bioreactors for Triterpene Production: Transcriptomic Insights into Biomass and Triterpene Biosynthesis. Int J Mol Sci 2025; 26:3188. [PMID: 40244007 PMCID: PMC11989043 DOI: 10.3390/ijms26073188] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2025] [Revised: 03/24/2025] [Accepted: 03/28/2025] [Indexed: 04/18/2025] Open
Abstract
Plant cell suspension cultures offer a sustainable method for producing valuable secondary metabolites, such as bioactive pentacyclic triterpenes. This study established a high-triterpene-yielding cell suspension culture from the apple cultivar "Cox Orange Pippin". Through transcriptomic analysis and triterpene profiling across growth phases, we uncovered complex regulatory networks that govern biomass production and triterpene biosynthesis. Key biological processes, including cell cycle regulation, cell wall biosynthesis, lipid metabolism, and stress response mechanisms, play pivotal roles in culture dynamics. Differential gene expression linked to these processes revealed how the culture adapts to growth conditions and nutrient availability at each growth phase. Methyl jasmonate elicitation enhanced phenylpropanoid and flavonoid biosynthesis, along with specific triterpene production pathways, highlighting its potential for optimizing secondary metabolite production. Key enzymes, such as oxidosqualene cyclase 4 and a putative C-2α hydroxylase, were identified as promising targets for future metabolic engineering efforts. This study represents the first in-depth report on the molecular mechanisms underlying plant cell growth in bioreactors, specially focusing on a cell suspension culture derived from a semi-russeted apple cultivar. The findings reveal key regulatory pathways in biomass accumulation and triterpene production, offering valuable insights for optimizing bioreactor cultures for industrial applications.
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Affiliation(s)
- Xuan Xu
- Luxembourg Institute of Science and Technology, Technology, 5, Rue Bommel, L-4940 Hautcharage, Luxembourg; (E.C.); (G.G.); (K.S.); (S.J.); (J.R.); (J.-F.H.); (S.L.)
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Borden LK, Nader MG, Burni FA, Grasso SM, Orueta‐Ortega I, Srivastava M, Montero‐Atienza P, Erdi M, Wright SL, Sarkar R, Sandler AD, Raghavan SR. Switchable Adhesion of Hydrogels to Plant and Animal Tissues. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2025; 12:e2411942. [PMID: 39644503 PMCID: PMC11792046 DOI: 10.1002/advs.202411942] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2024] [Revised: 10/27/2024] [Indexed: 12/09/2024]
Abstract
The ability to "switch on" adhesion between a thin hydrogel and a biological tissue can be useful in biomedical applications such as surgery. One way to accomplish this is with an electric field, a phenomenon termed electroadhesion (EA). Here, it is shown that cationic gels can be adhered by EA to tissues across all of biology. This includes tissues from animals, including humans and other mammals; birds; fish; reptiles (e.g., lizards); amphibians (e.g., frogs), and invertebrates (e.g., shrimp, worms). Gels can also be adhered to soft tissues from plants, including fruit (e.g., plums) and vegetables (e.g; carrot). In all cases, EA is induced by a low electric field (DC, 10 V) applied for a short time (20 s). After the field is removed, the adhesion persists. The adhesion can also be reversed by applying the field with opposite polarity. In mammals, EA is strong for many tissues (e.g., arteries, muscles, and cornea), but not others (e.g., adipose, brain). Tissues with anisotropic structure show anisotropic adhesion strength by EA. The higher the concentration of anionic polymers in a tissue, the stronger its adhesion to cationic gels. This underscores that EA is mediated by the electrophoresis of chain segments across the gel-tissue interface.
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Affiliation(s)
- Leah K. Borden
- Department of Chemical & Biomolecular EngineeringUniversity of MarylandCollege ParkMD20742USA
| | - Morine G. Nader
- Department of Chemical & Biomolecular EngineeringUniversity of MarylandCollege ParkMD20742USA
| | - Faraz A. Burni
- Department of Chemical & Biomolecular EngineeringUniversity of MarylandCollege ParkMD20742USA
| | - Samantha M. Grasso
- Department of Chemical & Biomolecular EngineeringUniversity of MarylandCollege ParkMD20742USA
| | - Irene Orueta‐Ortega
- Department of Chemical & Biomolecular EngineeringUniversity of MarylandCollege ParkMD20742USA
| | - Mahima Srivastava
- Department of Chemical & Biomolecular EngineeringUniversity of MarylandCollege ParkMD20742USA
| | | | - Metecan Erdi
- Department of Chemical & Biomolecular EngineeringUniversity of MarylandCollege ParkMD20742USA
| | - Sarah L. Wright
- Sheikh Zayed Institute for Pediatric Surgical InnovationChildren's National Medical CenterWashington DC20010USA
| | - Rajabrata Sarkar
- Division of Vascular SurgeryUniversity of MarylandBaltimoreMD21201USA
| | - Anthony D. Sandler
- Sheikh Zayed Institute for Pediatric Surgical InnovationChildren's National Medical CenterWashington DC20010USA
| | - Srinivasa R. Raghavan
- Department of Chemical & Biomolecular EngineeringUniversity of MarylandCollege ParkMD20742USA
- Fischell Department of BioengineeringUniversity of MarylandCollege ParkMD20742USA
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Bernal-Gallardo JJ, González-Aguilera KL, de Folter S. EXPANSIN15 is involved in flower and fruit development in Arabidopsis. PLANT REPRODUCTION 2024; 37:259-270. [PMID: 38285171 PMCID: PMC11180156 DOI: 10.1007/s00497-023-00493-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2023] [Accepted: 12/14/2023] [Indexed: 01/30/2024]
Abstract
KEY MESSAGE EXPANSIN15 is involved in petal cell morphology and size, the fusion of the medial tissues in the gynoecium and expansion of fruit valve cells. It genetically interacts with SPATULA and FRUITFULL. Cell expansion is fundamental for the formation of plant tissues and organs, contributing to their final shape and size during development. To better understand this process in flower and fruit development, we have studied the EXPANSIN15 (EXPA15) gene, which showed expression in petals and in the gynoecium. By analyzing expa15 mutant alleles, we found that EXPA15 is involved in petal shape and size determination, by affecting cell morphology and number. EXPA15 also has a function in fruit size, by affecting cell size and number. Furthermore, EXPA15 promotes fusion of the medial tissues in the gynoecium. In addition, we observed genetic interactions with the transcription factors SPATULA (SPT) and FRUITFULL (FUL) in gynoecium medial tissue fusion, style and stigma development and fruit development in Arabidopsis. These findings contribute to the importance of EXPANSINS in floral and fruit development in Arabidopsis.
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Affiliation(s)
- Judith Jazmin Bernal-Gallardo
- Unidad de Genómica Avanzada (UGA-Langebio), Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), 36824, Irapuato, GTO., Mexico
| | - Karla L González-Aguilera
- Unidad de Genómica Avanzada (UGA-Langebio), Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), 36824, Irapuato, GTO., Mexico
| | - Stefan de Folter
- Unidad de Genómica Avanzada (UGA-Langebio), Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), 36824, Irapuato, GTO., Mexico.
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Lou H, Tucker MR, Shirley NJ, Lahnstein J, Yang X, Ma C, Schwerdt J, Fusi R, Burton RA, Band LR, Bennett MJ, Bulone V. The cellulose synthase-like F3 (CslF3) gene mediates cell wall polysaccharide synthesis and affects root growth and differentiation in barley. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 110:1681-1699. [PMID: 35395116 PMCID: PMC9324092 DOI: 10.1111/tpj.15764] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Revised: 04/04/2022] [Accepted: 04/05/2022] [Indexed: 06/14/2023]
Abstract
The barley cellulose synthase-like F (CslF) genes encode putative cell wall polysaccharide synthases. They are related to the cellulose synthase (CesA) genes involved in cellulose biosynthesis, and the CslD genes that influence root hair development. Although CslD genes are implicated in callose, mannan and cellulose biosynthesis, and are found in both monocots and eudicots, CslF genes are specific to the Poaceae. Recently the barley CslF3 (HvCslF3) gene was shown to be involved in the synthesis of a novel (1,4)-β-linked glucoxylan, but it remains unclear whether this gene contributes to plant growth and development. Here, expression profiling using qRT-PCR and mRNA in situ hybridization revealed that HvCslF3 accumulates in the root elongation zone. Silencing HvCslF3 by RNAi was accompanied by slower root growth, linked with a shorter elongation zone and a significant reduction in root system size. Polymer profiling of the RNAi lines revealed a significant reduction in (1,4)-β-linked glucoxylan levels. Remarkably, the heterologous expression of HvCslF3 in wild-type (Col-0) and root hair-deficient Arabidopsis mutants (csld3 and csld5) complemented the csld5 mutant phenotype, in addition to altering epidermal cell fate. Our results reveal a key role for HvCslF3 during barley root development and suggest that members of the CslD and CslF gene families have similar functions during root growth regulation.
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Affiliation(s)
- Haoyu Lou
- School of Agriculture, Food and WineUniversity of AdelaideWaite CampusUrrbraeSouth Australia5064Australia
- Division of Plant and Crop Sciences, School of BioscienceUniversity of NottinghamSutton Bonington Campus, LoughboroughLeicestershireLE12 5RDUK
| | - Matthew R. Tucker
- School of Agriculture, Food and WineUniversity of AdelaideWaite CampusUrrbraeSouth Australia5064Australia
| | - Neil J. Shirley
- School of Agriculture, Food and WineUniversity of AdelaideWaite CampusUrrbraeSouth Australia5064Australia
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and WineUniversity of AdelaideWaite CampusUrrbraeSouth Australia5064Australia
| | - Jelle Lahnstein
- School of Agriculture, Food and WineUniversity of AdelaideWaite CampusUrrbraeSouth Australia5064Australia
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and WineUniversity of AdelaideWaite CampusUrrbraeSouth Australia5064Australia
- Adelaide Glycomics, School of Agriculture, Food and WineUniversity of AdelaideWaite CampusUrrbraeSouth Australia5064Australia
| | - Xiujuan Yang
- School of Agriculture, Food and WineUniversity of AdelaideWaite CampusUrrbraeSouth Australia5064Australia
| | - Chao Ma
- School of Agriculture, Food and WineUniversity of AdelaideWaite CampusUrrbraeSouth Australia5064Australia
| | - Julian Schwerdt
- School of Agriculture, Food and WineUniversity of AdelaideWaite CampusUrrbraeSouth Australia5064Australia
- Adelaide Glycomics, School of Agriculture, Food and WineUniversity of AdelaideWaite CampusUrrbraeSouth Australia5064Australia
| | - Riccardo Fusi
- Division of Plant and Crop Sciences, School of BioscienceUniversity of NottinghamSutton Bonington Campus, LoughboroughLeicestershireLE12 5RDUK
| | - Rachel A. Burton
- School of Agriculture, Food and WineUniversity of AdelaideWaite CampusUrrbraeSouth Australia5064Australia
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and WineUniversity of AdelaideWaite CampusUrrbraeSouth Australia5064Australia
| | - Leah R. Band
- Division of Plant and Crop Sciences, School of BioscienceUniversity of NottinghamSutton Bonington Campus, LoughboroughLeicestershireLE12 5RDUK
- School of Mathematical SciencesUniversity of NottinghamNottinghamNG7 2RDUK
| | - Malcolm J. Bennett
- Division of Plant and Crop Sciences, School of BioscienceUniversity of NottinghamSutton Bonington Campus, LoughboroughLeicestershireLE12 5RDUK
| | - Vincent Bulone
- School of Agriculture, Food and WineUniversity of AdelaideWaite CampusUrrbraeSouth Australia5064Australia
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and WineUniversity of AdelaideWaite CampusUrrbraeSouth Australia5064Australia
- Adelaide Glycomics, School of Agriculture, Food and WineUniversity of AdelaideWaite CampusUrrbraeSouth Australia5064Australia
- Division of Glycoscience, Department of Chemistry, School of Engineering Sciences in Chemistry, Biotechnology and HealthRoyal Institute of Technology (KTH), AlbaNova University CentreStockholmSweden
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Majda M, Kozlova L, Banasiak A, Derba-Maceluch M, Iashchishyn IA, Morozova-Roche LA, Smith RS, Gorshkova T, Mellerowicz EJ. Elongation of wood fibers combines features of diffuse and tip growth. THE NEW PHYTOLOGIST 2021; 232:673-691. [PMID: 33993523 DOI: 10.1111/nph.17468] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Accepted: 04/28/2021] [Indexed: 06/12/2023]
Abstract
Xylem fibers are highly elongated cells that are key constituents of wood, play major physiological roles in plants, comprise an important terrestrial carbon reservoir, and thus have enormous ecological and economic importance. As they develop, from fusiform initials, their bodies remain the same length while their tips elongate and intrude into intercellular spaces. To elucidate mechanisms of tip elongation, we studied the cell wall along the length of isolated, elongating aspen xylem fibers and used computer simulations to predict the forces driving the intercellular space formation required for their growth. We found pectin matrix epitopes (JIM5, LM7) concentrated at the tips where cellulose microfibrils have transverse orientation, and xyloglucan epitopes (CCRC-M89, CCRC-M58) in fiber bodies where microfibrils are disordered. These features are accompanied by changes in cell wall thickness, indicating that while the cell wall elongates strictly at the tips, it is deposited all over fibers. Computer modeling revealed that the intercellular space formation needed for intrusive growth may only require targeted release of cell adhesion, which allows turgor pressure in neighboring fiber cells to 'round' the cells creating spaces. These characteristics show that xylem fibers' elongation involves a distinct mechanism that combines features of both diffuse and tip growth.
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Affiliation(s)
- Mateusz Majda
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre (UPSC), Swedish University of Agricultural Sciences, Umeå, 901 83, Sweden
- Department of Computational and Systems Biology, John Innes Centre, Norwich Research Park, Colney Lane, Norwich, NR4 7UH, UK
| | - Liudmila Kozlova
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre (UPSC), Swedish University of Agricultural Sciences, Umeå, 901 83, Sweden
- Kazan Institute of Biochemistry and Biophysics, FRC Kazan Scientific Centre, Russian Academy of Sciences, Kazan, 420111, Russia
| | - Alicja Banasiak
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre (UPSC), Swedish University of Agricultural Sciences, Umeå, 901 83, Sweden
- Department of Plant Developmental Biology, Institute of Experimental Biology, University of Wrocław, Kanonia 6/8, Wrocław, 50-328, Poland
| | - Marta Derba-Maceluch
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre (UPSC), Swedish University of Agricultural Sciences, Umeå, 901 83, Sweden
| | - Igor A Iashchishyn
- Department of Medical Biochemistry and Biophysics, Umeå University, Umeå, SE-901 87, Sweden
| | | | - Richard S Smith
- Department of Computational and Systems Biology, John Innes Centre, Norwich Research Park, Colney Lane, Norwich, NR4 7UH, UK
| | - Tatyana Gorshkova
- Kazan Institute of Biochemistry and Biophysics, FRC Kazan Scientific Centre, Russian Academy of Sciences, Kazan, 420111, Russia
| | - Ewa J Mellerowicz
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre (UPSC), Swedish University of Agricultural Sciences, Umeå, 901 83, Sweden
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Abstract
Salt stress causes several damaging effects in plant cells. These commonly observed effects are the results of oxidative, osmotic, and toxic stresses. To ensure normal growth and development of tissues, the cellular compartments of multicellular plants have a unique system that provides the specified parameters of growth and differentiation. The cell shape and the direction of division support the steady development of the organism, the habit, and the typical shape of the organs and the whole plant. When dividing, daughter cells evenly or unevenly distribute the components of cytoplasm. Factors such as impaired osmotic regulation, exposure to toxic compounds, and imbalance in the antioxidant system cause disorders associated with the moving of organelles, distribution transformations of the endoplasmic reticulum, and the vacuolar compartment. In some cases, one can observe a different degree of plasmolysis manifestation, local changes in the density of cytoplasm. Together, these processes can cause disturbances in the direction of cell division, the formation of a phragmoplast, the formation of nuclei of daughter cells, and a violation of their fine structural organization. These processes are often accompanied by significant damage to the cytoskeleton, the formation of nonspecific structures formed by proteins of the cytoskeleton. The consequences of these processes can lead to the death of some cells or to a significant change in their morphology and properties, deformation of newly formed tissues and organs, and changes in the plant phenotype. Thus, as a result of significant violations of the cytoskeleton, causing critical destabilization of the symmetric distribution of the cell content, disturbances in the distribution of chromosomes, especially in polyploid cells, may occur, resulting in the appearance of micronuclei. Hence, the asymmetry of a certain component of the plant cell is a marker of susceptibility to abiotic damage.
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Buttò V, Rozenberg P, Deslauriers A, Rossi S, Morin H. Environmental and developmental factors driving xylem anatomy and micro-density in black spruce. THE NEW PHYTOLOGIST 2021; 230:957-971. [PMID: 33480027 DOI: 10.1111/nph.17223] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2020] [Accepted: 01/11/2021] [Indexed: 06/12/2023]
Abstract
Wood density is the product of carbon allocation for structural growth and reflects the trade-off between mechanical support and water conductivity. We tested a conceptual framework based on the assumption that micro-density depends on direct and indirect relationships with endogenous and exogenous factors. The dynamics of wood formation, including timings and rates of cell division, cell enlargement, and secondary wall deposition, were assessed from microcores collected weekly between 2002 and 2016 from five black spruce stands located along a latitudinal gradient in Quebec, Canada. Cell anatomy and micro-density were recorded by anatomical analyses and X-ray measurements. Our structural equation model explained 80% of micro-density variation within the tree-ring with direct effects of wall thickness (σ = 0.61), cell diameter (σ = -0.51), and photoperiod (σ = -0.26). Wood formation dynamics had an indirect effect on micro-density. Micro-density increased under longer periods of cell-wall deposition and shorter durations of enlargement. Our results fill a critical gap in understanding the relationships underlying micro-density variation in conifers. We demonstrated that short-term responses to environmental variations could be overridden by plastic responses that modulate cell differentiation. Our results point to wood formation dynamics as a reliable predictor of carbon allocation in trees.
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Affiliation(s)
- Valentina Buttò
- Département des Sciences Fondamentales, Université du Québec à Chicoutimi, 555, Boulevard de l'Université, Chicoutimi (Québec), Chicoutimi, QC G7H 2B1, Canada
| | - Philippe Rozenberg
- Institut National de la Recherche pour l'Agriculture, l'Alimentation et l'Environnement (INRAE), UMR 0588 BIOFORA, Ardon CS 40001, 45075, Orléans Cedex 2, France
| | - Annie Deslauriers
- Département des Sciences Fondamentales, Université du Québec à Chicoutimi, 555, Boulevard de l'Université, Chicoutimi (Québec), Chicoutimi, QC G7H 2B1, Canada
| | - Sergio Rossi
- Département des Sciences Fondamentales, Université du Québec à Chicoutimi, 555, Boulevard de l'Université, Chicoutimi (Québec), Chicoutimi, QC G7H 2B1, Canada
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Hubert Morin
- Département des Sciences Fondamentales, Université du Québec à Chicoutimi, 555, Boulevard de l'Université, Chicoutimi (Québec), Chicoutimi, QC G7H 2B1, Canada
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Chen Z, Zhou T, Hu J, Duan H. Quartz Crystal Microbalance with Dissipation Monitoring of Dynamic Viscoelastic Changes of Tobacco BY-2 Cells under Different Osmotic Conditions. BIOSENSORS 2021; 11:136. [PMID: 33925584 PMCID: PMC8145959 DOI: 10.3390/bios11050136] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/17/2021] [Revised: 04/21/2021] [Accepted: 04/22/2021] [Indexed: 01/03/2023]
Abstract
The plant cell mechanics, including turgor pressure and wall mechanical properties, not only determine the growth of plant cells, but also reflect the functional and structural changes of plant cells under biotic and abiotic stresses. However, there are currently no appropriate techniques allowing to monitor the complex mechanical properties of living plant cells non-invasively and continuously. In this work, quartz crystal microbalance with dissipation (QCM-D) monitoring technique with overtones (3-9) was used for the dynamic monitoring of adhesions of living tobacco BY-2 cells onto positively charged N,N-dimethyl-N-propenyl-2-propen-1-aminiumchloride homopolymer (PDADMAC)/SiO2 QCM crystals under different concentrations of mannitol (CM) and the subsequent effects of osmotic stresses. The cell viscoelastic index (CVIn) (CVIn = ΔD⋅n/ΔF) was used to characterize the viscoelastic properties of BY-2 cells under different osmotic conditions. Our results indicated that lower overtones of QCM could detect both the cell wall and cytoskeleton structures allowing the detection of plasmolysis phenomena; whereas higher overtones could only detect the cell wall's mechanical properties. The QCM results were further discussed with the morphological changes of the BY-2 cells by an optical microscopy. The dynamic changes of cell's generated forces or cellular structures of plant cells caused by external stimuli (or stresses) can be traced by non-destructive and dynamic monitoring of cells' viscoelasticity, which provides a new way for the characterization and study of plant cells. QCM-D could map viscoelastic properties of different cellular structures in living cells and could be used as a new tool to test the mechanical properties of plant cells.
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Affiliation(s)
- Zongxing Chen
- College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha 410128, China; (Z.C.); (J.H.); (H.D.)
- Hunan Provincial Engineering Technology Research Center for Cell Mechanics and Function Analysis, Changsha 410128, China
| | - Tiean Zhou
- College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha 410128, China; (Z.C.); (J.H.); (H.D.)
- Hunan Provincial Engineering Technology Research Center for Cell Mechanics and Function Analysis, Changsha 410128, China
| | - Jiajin Hu
- College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha 410128, China; (Z.C.); (J.H.); (H.D.)
- Hunan Provincial Engineering Technology Research Center for Cell Mechanics and Function Analysis, Changsha 410128, China
| | - Haifeng Duan
- College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha 410128, China; (Z.C.); (J.H.); (H.D.)
- Hunan Provincial Engineering Technology Research Center for Cell Mechanics and Function Analysis, Changsha 410128, China
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Jupa R, Mészáros M, Plavcová L. Linking wood anatomy with growth vigour and susceptibility to alternate bearing in composite apple and pear trees. PLANT BIOLOGY (STUTTGART, GERMANY) 2021; 23:172-183. [PMID: 32939929 DOI: 10.1111/plb.13182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2020] [Accepted: 08/27/2020] [Indexed: 06/11/2023]
Abstract
Excess vegetative growth and irregular fruit-bearing are often undesirable in horticultural practice. However, the biological mechanisms underlying these traits in fruit trees are not fully understood. Here, we tested if growth vigour and susceptibility of apple and pear trees to alternate fruit-bearing are associated with vascular anatomy. We examined anatomical traits related to water transport and nutrient storage in young woody shoots and roots of 15 different scion/rootstock cultivars of apple and pear trees. In addition, soil and leaf water potentials were measured across a drought period. We found a positive correlation between the mean vessel diameter of roots and the annual shoot length. Vigorously growing trees also maintained less negative midday leaf water potential during drought. Furthermore, we observed a close negative correlation between the proportions of total parenchyma in the shoots and the alternate bearing index. Based on anatomical proxies, our results suggest that xylem transport efficiency of rootstocks is linked to growth vigour of both apple and pear trees, while limited carbohydrate storage capacity of scions may be associated with increased susceptibility to alternate bearing. These findings can be useful for the breeding of new cultivars of commercially important fruit trees.
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Affiliation(s)
- R Jupa
- Department of Biology, Faculty of Science, University of Hradec Králové, Hradec Králové, Czech Republic
| | - M Mészáros
- Research and Breeding Institute of Pomology, Hořice, Czech Republic
| | - L Plavcová
- Department of Biology, Faculty of Science, University of Hradec Králové, Hradec Králové, Czech Republic
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Traversari S, De Carlo A, Traversi ML, Minnocci A, Francini A, Sebastiani L, Giovannelli A. Osmotic adjustments support growth of poplar cultured cells under high concentrations of carbohydrates. PLANT CELL REPORTS 2020; 39:971-982. [PMID: 32314047 DOI: 10.1007/s00299-020-02542-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2019] [Accepted: 04/06/2020] [Indexed: 06/11/2023]
Abstract
Poplar callus maintained a specific difference in osmotic potential with respect to media when supplemented with different carbohydrate concentrations. This balance in osmotic potential guaranteed the growth capacity. Osmotic stress is caused by several abiotic factors such as drought, salinity, or freezing. However, the threshold of osmotic potential that allows the growth under stress conditions has not been thoroughly studied. In this study, different levels of osmotic stress in Populus alba (L.) callus have been induced with the addition of mannitol or sorbitol in the medium (from 0 to 500 mM). The key factor for preserving the growth was observed to be the restoration of a constant difference in osmotic potential between callus and medium for all the tested conditions. The osmotic adjustments were primarily achieved with the uptake of mannitol or sorbitol from the media considering their chemical properties instead of their biological functions. The decrease in water content (from - 1 to - 10% after 21 days) and mineral elements, such as potassium, calcium, and magnesium, together with the alterations in cell morphology, did not show negative effects on growth. The activity of sorbitol dehydrogenase was detected for the first time in poplar (+ 4.7 U l-1 in callus treated with sorbitol compared to control callus). This finding suggested the importance of choosing carefully the molecules used to exert osmotic stress for separating the dual function of carbohydrates in osmotic adjustments and cell metabolism.
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Affiliation(s)
- Silvia Traversari
- BioLabs, Institute of Life Sciences, Scuola Superiore Sant'Anna, Piazza Martiri della Libertà 33, 56127, Pisa, Italy
| | - Anna De Carlo
- Institute of Bioeconomy (IBE-CNR), Via Madonna del Piano 10, Sesto F.no, 50019, Florence, Italy
| | - Maria Laura Traversi
- Research Institute on Terrestrial Ecosystems (IRET-CNR), Via Madonna del Piano 10, Sesto F.no, 50019, Florence, Italy
| | - Antonio Minnocci
- BioLabs, Institute of Life Sciences, Scuola Superiore Sant'Anna, Piazza Martiri della Libertà 33, 56127, Pisa, Italy
| | - Alessandra Francini
- BioLabs, Institute of Life Sciences, Scuola Superiore Sant'Anna, Piazza Martiri della Libertà 33, 56127, Pisa, Italy
| | - Luca Sebastiani
- BioLabs, Institute of Life Sciences, Scuola Superiore Sant'Anna, Piazza Martiri della Libertà 33, 56127, Pisa, Italy.
| | - Alessio Giovannelli
- BioLabs, Institute of Life Sciences, Scuola Superiore Sant'Anna, Piazza Martiri della Libertà 33, 56127, Pisa, Italy
- Research Institute on Terrestrial Ecosystems (IRET-CNR), Via Madonna del Piano 10, Sesto F.no, 50019, Florence, Italy
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Yoneda A, Ohtani M, Katagiri D, Hosokawa Y, Demura T. Hechtian Strands Transmit Cell Wall Integrity Signals in Plant Cells. PLANTS 2020; 9:plants9050604. [PMID: 32397402 PMCID: PMC7284614 DOI: 10.3390/plants9050604] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/01/2020] [Revised: 05/03/2020] [Accepted: 05/05/2020] [Indexed: 01/09/2023]
Abstract
Hechtian strands are thread-like structures in plasmolyzed plant cells that connect the cell wall to the plasma membrane. Although these strands were first observed more than 100 years ago, their physiological roles are largely unknown. Here, we used intracellular laser microdissection to examine the effects of disrupting Hechtian strands on plasmolyzed tobacco BY-2 cells. When we focused femtosecond laser pulses on Hechtian strands, targeted disruptions were induced, but no visible changes in cell morphology were detected. However, the calcofluor white signals from β-glucans was detected in plasmolyzed cells with disrupted Hechtian strands, whereas no signals were detected in untreated plasmolyzed cells. These results suggest that Hechtian strands play roles in sensing cell wall integrity.
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Affiliation(s)
- Arata Yoneda
- Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma 630-0192, Japan; (A.Y.); (M.O.); (D.K.); (Y.H.)
| | - Misato Ohtani
- Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma 630-0192, Japan; (A.Y.); (M.O.); (D.K.); (Y.H.)
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa 277-8562, Japan
| | - Daisuke Katagiri
- Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma 630-0192, Japan; (A.Y.); (M.O.); (D.K.); (Y.H.)
| | - Yoichiroh Hosokawa
- Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma 630-0192, Japan; (A.Y.); (M.O.); (D.K.); (Y.H.)
| | - Taku Demura
- Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma 630-0192, Japan; (A.Y.); (M.O.); (D.K.); (Y.H.)
- Correspondence: ; Tel.: +81-743-72-5460
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12
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Arieti RS, Staiger CJ. Auxin-induced actin cytoskeleton rearrangements require AUX1. THE NEW PHYTOLOGIST 2020; 226:441-459. [PMID: 31859367 PMCID: PMC7154765 DOI: 10.1111/nph.16382] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Accepted: 12/10/2019] [Indexed: 05/06/2023]
Abstract
The actin cytoskeleton is required for cell expansion and implicated in cellular responses to the phytohormone auxin. However, the mechanisms that coordinate auxin signaling, cytoskeletal remodeling and cell expansion are poorly understood. Previous studies examined long-term actin cytoskeleton responses to auxin, but plants respond to auxin within minutes. Before this work, an extracellular auxin receptor - rather than the auxin transporter AUXIN RESISTANT 1 (AUX1) - was considered to precede auxin-induced cytoskeleton reorganization. In order to correlate actin array organization and dynamics with degree of cell expansion, quantitative imaging tools established baseline actin organization and illuminated individual filament behaviors in root epidermal cells under control conditions and after indole-3-acetic acid (IAA) application. We evaluated aux1 mutant actin organization responses to IAA and the membrane-permeable auxin 1-naphthylacetic acid (NAA). Cell length predicted actin organization and dynamics in control roots; short-term IAA treatments stimulated denser and more parallel, longitudinal arrays by inducing filament unbundling within minutes. Although AUX1 is necessary for full actin rearrangements in response to auxin, cytoplasmic auxin (i.e. NAA) stimulated a lesser response. Actin filaments became more 'organized' after IAA stopped elongation, refuting the hypothesis that 'more organized' actin arrays universally correlate with rapid growth. Short-term actin cytoskeleton response to auxin requires AUX1 and/or cytoplasmic auxin.
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Affiliation(s)
- Ruthie S. Arieti
- Department of Biological SciencesPurdue UniversityWest LafayetteIN47907‐2064USA
- Purdue University Interdisciplinary Life Sciences Graduate Program (PULSe)Purdue UniversityWest LafayetteIN47907USA
- Center for Plant BiologyPurdue UniversityWest LafayetteIN47907USA
| | - Christopher J. Staiger
- Department of Biological SciencesPurdue UniversityWest LafayetteIN47907‐2064USA
- Center for Plant BiologyPurdue UniversityWest LafayetteIN47907USA
- Department of Botany and Plant PathologyPurdue UniversityWest LafayetteIN47907USA
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13
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Gómez-Maqueo A, Welti-Chanes J, Cano MP. Release mechanisms of bioactive compounds in fruits submitted to high hydrostatic pressure: A dynamic microstructural analysis based on prickly pear cells. Food Res Int 2020; 130:108909. [DOI: 10.1016/j.foodres.2019.108909] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Revised: 12/05/2019] [Accepted: 12/15/2019] [Indexed: 02/07/2023]
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14
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Aliche EB, Prusova-Bourke A, Ruiz-Sanchez M, Oortwijn M, Gerkema E, Van As H, Visser RGF, van der Linden CG. Morphological and physiological responses of the potato stem transport tissues to dehydration stress. PLANTA 2020; 251:45. [PMID: 31915930 DOI: 10.1007/s00425-019-03336-7] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2019] [Accepted: 12/24/2019] [Indexed: 05/21/2023]
Abstract
Adaptation of the xylem under dehydration to smaller sized vessels and the increase in xylem density per stem area facilitate water transport during water-limiting conditions, and this has implications for assimilate transport during drought. The potato stem is the communication and transport channel between the assimilate-exporting source leaves and the terminal sink tissues of the plant. During environmental stress conditions like water scarcity, which adversely affect the performance (canopy growth and tuber yield) of the potato plant, the response of stem tissues is essential, however, still understudied. In this study, we investigated the response of the stem tissues of cultivated potato grown in the greenhouse to dehydration using a multidisciplinary approach including physiological, biochemical, morphological, microscopic, and magnetic resonance imaging techniques. We observed the most significant effects of water limitation in the lower stem regions of plants. The light microscopy analysis of the potato stem sections revealed that plants exposed to this particular dehydration stress have higher total xylem density per unit area than control plants. This increase in the total xylem density was accompanied by an increase in the number of narrow-diameter xylem vessels and a decrease in the number of large-diameter xylem vessels. Our MRI approach revealed a diurnal rhythm of xylem flux between day and night, with a reduction in xylem flux that is linked to dehydration sensitivity. We also observed that sink strength was the main driver of assimilate transport through the stem in our data set. These findings may present potential breeding targets for drought tolerance in potato.
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Affiliation(s)
- Ernest B Aliche
- Plant Breeding, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands
- Graduate School Experimental Plant Sciences, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands
| | - Alena Prusova-Bourke
- Laboratory of Biophysics, Wageningen University and Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands
| | - Mariam Ruiz-Sanchez
- Plant Breeding, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands
| | - Marian Oortwijn
- Plant Breeding, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands
| | - Edo Gerkema
- Laboratory of Biophysics, Wageningen University and Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands
| | - Henk Van As
- Laboratory of Biophysics, Wageningen University and Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands
| | - Richard G F Visser
- Plant Breeding, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands
| | - C Gerard van der Linden
- Plant Breeding, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands.
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15
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Guerriero G, Deshmukh R, Sonah H, Sergeant K, Hausman JF, Lentzen E, Valle N, Siddiqui KS, Exley C. Identification of the aquaporin gene family in Cannabis sativa and evidence for the accumulation of silicon in its tissues. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2019; 287:110167. [PMID: 31481224 DOI: 10.1016/j.plantsci.2019.110167] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2019] [Revised: 06/03/2019] [Accepted: 06/07/2019] [Indexed: 05/08/2023]
Abstract
Cannabis sativa is an economically important crop providing bast fibres for the textile and biocomposite sector. Length is a fundamental characteristic determining the properties of bast fibres. Aquaporins, channel-forming proteins facilitating the passage of water, urea, as well as elements such as boron and silicon, are known to play a role in the control of fibre length in other species, like cotton. By mining the available genome, we here identify, for the first time, the aquaporin gene family of C. sativa. The analysis of published RNA-Seq data and targeted qPCR on a textile variety reveal an organ-specific expression of aquaporin genes. Computational analyses, including homology-based search, phylogeny and protein modelling, identify two NOD26-like intrinsic proteins harbouring the Gly-Ser-Gly-Arg (GSGR) aromatic/Arg selectivity filter and 108 amino acid NPA (Asn-Pro-Ala) spacing, features reported to be associated with silicon permeability. SIMS nano-analysis and silica extraction coupled to fluorescence microscopy performed on hemp plantlets reveal the presence of silicon in the bast fibres of the hypocotyl and in leaves. The accumulation of silica in the distal cell walls of bast fibres and in the basal cells of leaf trichomes is indicative of a mechanical role.
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Affiliation(s)
- Gea Guerriero
- Research and Innovation Department, Luxembourg Institute of Science and Technology, 5 Avenue des Hauts-Fourneaux, L-4362, Esch/Alzette, Luxembourg.
| | - Rupesh Deshmukh
- National Agri-Food Biotechnology Institute (NABI), Sector-81 (Knowledge City), P.O. Manauli, S.A.S. Nagar, Mohali, 140306, Punjab, India
| | - Humira Sonah
- National Agri-Food Biotechnology Institute (NABI), Sector-81 (Knowledge City), P.O. Manauli, S.A.S. Nagar, Mohali, 140306, Punjab, India
| | - Kjell Sergeant
- Research and Innovation Department, Luxembourg Institute of Science and Technology, 5 Avenue des Hauts-Fourneaux, L-4362, Esch/Alzette, Luxembourg
| | - Jean-Francois Hausman
- Research and Innovation Department, Luxembourg Institute of Science and Technology, 5 Avenue des Hauts-Fourneaux, L-4362, Esch/Alzette, Luxembourg
| | - Esther Lentzen
- Research and Innovation Department, Luxembourg Institute of Science and Technology, 5 Avenue des Hauts-Fourneaux, L-4362, Esch/Alzette, Luxembourg
| | - Nathalie Valle
- Research and Innovation Department, Luxembourg Institute of Science and Technology, 5 Avenue des Hauts-Fourneaux, L-4362, Esch/Alzette, Luxembourg
| | - Khawar Sohail Siddiqui
- Life Sciences Department, King Fahd University of Petroleum and Minerals (KFUPM), 31261, Dhahran, Saudi Arabia
| | - Christopher Exley
- The Birchall Centre, Lennard Jones Laboratories, Keele University, Keele, Staffordshire, ST5 5BG, UK
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16
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Sergeant K, Printz B, Guerriero G, Renaut J, Lutts S, Hausman JF. The Dynamics of the Cell Wall Proteome of Developing Alfalfa Stems. BIOLOGY 2019; 8:E60. [PMID: 31430995 PMCID: PMC6784106 DOI: 10.3390/biology8030060] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/17/2019] [Revised: 08/06/2019] [Accepted: 08/14/2019] [Indexed: 12/24/2022]
Abstract
In this study, the cell-wall-enriched subproteomes at three different heights of alfalfa stems were compared. Since these three heights correspond to different states in stem development, a view on the dynamics of the cell wall proteome during cell maturation is obtained. This study of cell wall protein-enriched fractions forms the basis for a description of the development process of the cell wall and the linking cell wall localized proteins with the evolution of cell wall composition and structure. The sequential extraction of cell wall proteins with CaCl2, EGTA, and LiCl-complemented buffers was combined with a gel-based proteome approach and multivariate analysis. Although the highest similarities were observed between the apical and intermediate stem regions, the proteome patterns are characteristic for each region. Proteins that bind carbohydrates and have proteolytic activity, as well as enzymes involved in glycan remobilization, accumulate in the basal stem region. Beta-amylase and ferritin likewise accumulate more in the basal stem segment. Therefore, remobilization of nutrients appears to be an important process in the oldest stem segment. The intermediate and apical regions are sites of cell wall polymer remodeling, as suggested by the high abundance of proteins involved in the remodeling of the cell wall, such as xyloglucan endoglucosylase, beta-galactosidase, or the BURP-domain containing polygalacturonase non-catalytic subunit. However, the most striking change between the different stem parts is the strong accumulation of a DUF642-conserved domain containing protein in the apical region of the stem, which suggests a particular role of this protein during the early development of stem tissues.
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Affiliation(s)
- Kjell Sergeant
- Environmental Research and Innovation (ERIN) Department, Luxembourg Institute of Science and Technology (LIST), 4362 Esch/Alzette, Luxembourg.
| | - Bruno Printz
- Environmental Research and Innovation (ERIN) Department, Luxembourg Institute of Science and Technology (LIST), 4362 Esch/Alzette, Luxembourg
- Groupe de Recherche en Physiologie végétale (GRPV), Université catholique de Louvain, Earth and Life Institute Agronomy (ELI-A), 1348 Louvain-la-Neuve, Belgium
| | - Gea Guerriero
- Environmental Research and Innovation (ERIN) Department, Luxembourg Institute of Science and Technology (LIST), 4362 Esch/Alzette, Luxembourg
| | - Jenny Renaut
- Environmental Research and Innovation (ERIN) Department, Luxembourg Institute of Science and Technology (LIST), 4362 Esch/Alzette, Luxembourg
| | - Stanley Lutts
- Groupe de Recherche en Physiologie végétale (GRPV), Université catholique de Louvain, Earth and Life Institute Agronomy (ELI-A), 1348 Louvain-la-Neuve, Belgium
| | - Jean-Francois Hausman
- Environmental Research and Innovation (ERIN) Department, Luxembourg Institute of Science and Technology (LIST), 4362 Esch/Alzette, Luxembourg
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17
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Pierce ET, Graham BP, Stiff MR, Osborne JA, Haigler CH. Cultures of Gossypium barbadense cotton ovules offer insights into the microtubule-mediated control of fiber cell expansion. PLANTA 2019; 249:1551-1563. [PMID: 30729290 DOI: 10.1007/s00425-019-03106-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2018] [Accepted: 01/31/2019] [Indexed: 05/23/2023]
Abstract
A novel method for culturing ovules of Gossypium barbadense allowed in vitro comparisons with Gossypium hirsutum and revealed variable roles of microtubules in controlling cotton fiber cell expansion. Cotton fibers undergo extensive elongation and secondary wall thickening as they develop into our most important renewable textile material. These single cells elongate at the apex as well as elongating and expanding in diameter behind the apex. These multiple growth modes represent an interesting difference compared to classical tip-growing cells that needs to be explored further. In vitro ovule culture enables experimental analysis of the controls of cotton fiber development in commonly grown Gossypium hirsutum cotton, but, previously, there was no equivalent system for G. barbadense, which produces higher quality cotton fiber. Here, we describe: (a) how to culture the ovules of G. barbadense successfully, and (b) the results of an in vitro experiment comparing the role of microtubules in controlling cell expansion in different zones near the apex of three types of cotton fiber tips. Adding the common herbicide fluridone, 1-Methyl-3-phenyl-5-[3-(trifluoromethyl)phenyl]-4(1H)-pyridinone, to the medium supported G. barbadense ovule culture, with positive impacts on the number of useful ovules and fiber length. The effect is potentially mediated through inhibited synthesis of abscisic acid, which antagonized the positive effects of fluridone. Fiber development was perturbed by adding colchicine, a microtubule antagonist, to ovules of G. barbadense and G. hirsutum cultured 2 days after flowering. The results supported the zonal control of cell expansion in one type of G. hirsutum fiber tip and highlighted differences in the role of microtubules in modulating cell expansion between three types of cotton fiber tips.
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Affiliation(s)
- Ethan T Pierce
- Department of Crop and Soil Sciences, North Carolina State University, Raleigh, NC, 27695, USA
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, USA
| | - Benjamin P Graham
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, USA
| | - Michael R Stiff
- Department of Crop and Soil Sciences, North Carolina State University, Raleigh, NC, 27695, USA
- Department of Biology, Lenoir-Rhyne University, Hickory, NC, 28601, USA
| | - Jason A Osborne
- Department of Statistics, North Carolina State University, Raleigh, NC, 27695, USA
| | - Candace H Haigler
- Department of Crop and Soil Sciences, North Carolina State University, Raleigh, NC, 27695, USA.
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, USA.
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18
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Gorshkova T, Chernova T, Mokshina N, Gorshkov V, Kozlova L, Gorshkov O. Transcriptome Analysis of Intrusively Growing Flax Fibers Isolated by Laser Microdissection. Sci Rep 2018; 8:14570. [PMID: 30275452 PMCID: PMC6167358 DOI: 10.1038/s41598-018-32869-2] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2018] [Accepted: 09/18/2018] [Indexed: 11/19/2022] Open
Abstract
The intrusive growth, a type of plant cell elongation occurring in the depths of plant tissues, is characterized by the invasion of a growing cell between its neighbours due to a higher rate of elongation. In order to reveal the largely unknown molecular mechanisms of intrusive growth, we isolated primary flax phloem fibers specifically at the stage of intrusive growth by laser microdissection. The comparison of the RNA-Seq data from several flax stem parts enabled the characterization of those processes occurring specifically during the fiber intrusive elongation. The revealed molecular players are summarized as those involved in the supply of assimilates and support of turgor pressure, cell wall enlargement and modification, regulation by transcription factors and hormones, and responses to abiotic stress factors. The data obtained in this study provide a solid basis for developing approaches to manipulate fiber intrusive elongation, which is of importance both for plant biology and the yield of fiber crops.
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Affiliation(s)
- Tatyana Gorshkova
- Kazan Institute of Biochemistry and Biophysics, Federal Research Center "Kazan Scientific Center of RAS" 420111, Lobachevsky Str., 2/31, Kazan, Russian Federation.
| | - Tatyana Chernova
- Kazan Institute of Biochemistry and Biophysics, Federal Research Center "Kazan Scientific Center of RAS" 420111, Lobachevsky Str., 2/31, Kazan, Russian Federation
| | - Natalia Mokshina
- Kazan Institute of Biochemistry and Biophysics, Federal Research Center "Kazan Scientific Center of RAS" 420111, Lobachevsky Str., 2/31, Kazan, Russian Federation
| | - Vladimir Gorshkov
- Kazan Institute of Biochemistry and Biophysics, Federal Research Center "Kazan Scientific Center of RAS" 420111, Lobachevsky Str., 2/31, Kazan, Russian Federation
| | - Liudmila Kozlova
- Kazan Institute of Biochemistry and Biophysics, Federal Research Center "Kazan Scientific Center of RAS" 420111, Lobachevsky Str., 2/31, Kazan, Russian Federation
| | - Oleg Gorshkov
- Kazan Institute of Biochemistry and Biophysics, Federal Research Center "Kazan Scientific Center of RAS" 420111, Lobachevsky Str., 2/31, Kazan, Russian Federation
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19
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Feeding the Walls: How Does Nutrient Availability Regulate Cell Wall Composition? Int J Mol Sci 2018; 19:ijms19092691. [PMID: 30201905 PMCID: PMC6164997 DOI: 10.3390/ijms19092691] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2018] [Revised: 08/27/2018] [Accepted: 08/29/2018] [Indexed: 01/12/2023] Open
Abstract
Nutrients are critical for plants to grow and develop, and nutrient depletion severely affects crop yield. In order to optimize nutrient acquisition, plants adapt their growth and root architecture. Changes in growth are determined by modifications in the cell walls surrounding every plant cell. The plant cell wall, which is largely composed of complex polysaccharides, is essential for plants to attain their shape and to protect cells against the environment. Within the cell wall, cellulose strands form microfibrils that act as a framework for other wall components, including hemicelluloses, pectins, proteins, and, in some cases, callose, lignin, and suberin. Cell wall composition varies, depending on cell and tissue type. It is governed by synthesis, deposition and remodeling of wall components, and determines the physical and structural properties of the cell wall. How nutrient status affects cell wall synthesis and organization, and thus plant growth and morphology, remains poorly understood. In this review, we aim to summarize and synthesize research on the adaptation of root cell walls in response to nutrient availability and the potential role of cell walls in nutrient sensing.
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Majda M, Robert S. The Role of Auxin in Cell Wall Expansion. Int J Mol Sci 2018; 19:ijms19040951. [PMID: 29565829 PMCID: PMC5979272 DOI: 10.3390/ijms19040951] [Citation(s) in RCA: 194] [Impact Index Per Article: 27.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2018] [Revised: 03/19/2018] [Accepted: 03/19/2018] [Indexed: 11/20/2022] Open
Abstract
Plant cells are surrounded by cell walls, which are dynamic structures displaying a strictly regulated balance between rigidity and flexibility. Walls are fairly rigid to provide support and protection, but also extensible, to allow cell growth, which is triggered by a high intracellular turgor pressure. Wall properties regulate the differential growth of the cell, resulting in a diversity of cell sizes and shapes. The plant hormone auxin is well known to stimulate cell elongation via increasing wall extensibility. Auxin participates in the regulation of cell wall properties by inducing wall loosening. Here, we review what is known on cell wall property regulation by auxin. We focus particularly on the auxin role during cell expansion linked directly to cell wall modifications. We also analyze downstream targets of transcriptional auxin signaling, which are related to the cell wall and could be linked to acid growth and the action of wall-loosening proteins. All together, this update elucidates the connection between hormonal signaling and cell wall synthesis and deposition.
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Affiliation(s)
- Mateusz Majda
- Umeå Plant Science Centre (UPSC), Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 901 83 Umeå, Sweden.
| | - Stéphanie Robert
- Umeå Plant Science Centre (UPSC), Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 901 83 Umeå, Sweden.
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21
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Molecular Mechanisms Affecting Cell Wall Properties and Leaf Architecture. THE LEAF: A PLATFORM FOR PERFORMING PHOTOSYNTHESIS 2018. [DOI: 10.1007/978-3-319-93594-2_8] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/09/2022]
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22
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Guerriero G, Mangeot-Peter L, Legay S, Behr M, Lutts S, Siddiqui KS, Hausman JF. Identification of fasciclin-like arabinogalactan proteins in textile hemp (Cannabis sativa L.): in silico analyses and gene expression patterns in different tissues. BMC Genomics 2017; 18:741. [PMID: 28931375 PMCID: PMC5606014 DOI: 10.1186/s12864-017-3970-5] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2017] [Accepted: 07/31/2017] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The fasciclin-like arabinogalactan proteins (FLAs) belong to the arabinogalactan protein (AGP) superfamily and are known to play different physiological roles in plants. This class of proteins was shown to participate in plant growth, development, defense against abiotic stresses and, notably, cell wall biosynthesis. Although some studies are available on the characterization of FLA genes from different species, both woody and herbaceous, no detailed information is available on the FLA family of textile hemp (Cannabis sativa L.), an economically important fibre crop. RESULTS By searching the Cannabis genome and EST databases, 23 CsaFLAs have been here identified which are divided into four phylogenetic groups. A real-time qPCR analysis performed on stem tissues (isolated bast fibres and shivs sampled at three heights), hypocotyls (6-9-12-15-17-20 days-old), whole seedlings, roots, leaves and female/male flowers of the monoecious fibre variety Santhica 27, indicates that the identified FLA genes are differentially expressed. Interestingly, some hemp FLAs are expressed during early phases of fibre growth (elongation), while others are more expressed in the middle and base of the stem and thus potentially involved in secondary cell wall formation (fibre thickening). The bioinformatic analysis of the promoter regions shows that the FLAs upregulated in the younger regions of the stem share a conserved motif related to flowering control and regulation of photoperiod perception. The promoters of the FLA genes expressed at higher levels in the older stem regions, instead, share a motif putatively recognized by MYB3, a transcriptional repressor belonging to the MYB family subgroup S4. CONCLUSIONS These results point to the existence of a transcriptional network fine-tuning the expression of FLA genes in the older and younger regions of the stem, as well as in the bast fibres/shivs of textile hemp. In summary, our study paves the way for future analyses on the biological functions of FLAs in an industrially relevant fibre crop.
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Affiliation(s)
- Gea Guerriero
- Environmental Research and Innovation (ERIN) Department, Luxembourg Institute of Science and Technology (LIST), 5, Avenue des Hauts-Fourneaux, L-4362, Esch/Alzette, Luxembourg.
| | - Lauralie Mangeot-Peter
- Environmental Research and Innovation (ERIN) Department, Luxembourg Institute of Science and Technology (LIST), 5, Avenue des Hauts-Fourneaux, L-4362, Esch/Alzette, Luxembourg
- Present address: Institut National de la Recherche Agronomique, Université de Lorraine, UMR 1136, Interactions Arbres-Microorganismes, Champenoux, France
| | - Sylvain Legay
- Environmental Research and Innovation (ERIN) Department, Luxembourg Institute of Science and Technology (LIST), 5, Avenue des Hauts-Fourneaux, L-4362, Esch/Alzette, Luxembourg
| | - Marc Behr
- Environmental Research and Innovation (ERIN) Department, Luxembourg Institute of Science and Technology (LIST), 5, Avenue des Hauts-Fourneaux, L-4362, Esch/Alzette, Luxembourg
- Groupe de Recherche en Physiologie Végétale, Earth and Life Institute-Agronomy, Université catholique de Louvain, Louvain-la-Neuve, Belgium
| | - Stanley Lutts
- Groupe de Recherche en Physiologie Végétale, Earth and Life Institute-Agronomy, Université catholique de Louvain, Louvain-la-Neuve, Belgium
| | - Khawar Sohail Siddiqui
- Life Sciences Department, King Fahd University of Petroleum and Minerals (KFUPM), Dhahran, Saudi Arabia
| | - Jean-Francois Hausman
- Environmental Research and Innovation (ERIN) Department, Luxembourg Institute of Science and Technology (LIST), 5, Avenue des Hauts-Fourneaux, L-4362, Esch/Alzette, Luxembourg
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23
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Stavolone L, Lionetti V. Extracellular Matrix in Plants and Animals: Hooks and Locks for Viruses. Front Microbiol 2017; 8:1760. [PMID: 28955324 PMCID: PMC5600933 DOI: 10.3389/fmicb.2017.01760] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2017] [Accepted: 08/30/2017] [Indexed: 01/15/2023] Open
Abstract
The extracellular matrix (ECM) of animal and plants cells plays important roles in viral diseases. While in animal cells extracellular matrix components can be exploited by viruses for recognition, attachment and entry, the plant cell wall acts as a physical barrier to viral entry and adds a higher level of difficulty to intercellular movement of viruses. Interestingly, both in plant and animal systems, ECM can be strongly remodeled during virus infection, and the understanding of remodeling mechanisms and molecular players offers new perspectives for therapeutic intervention. This review focuses on the different roles played by the ECM in plant and animal hosts during virus infection with special emphasis on the similarities and differences. Possible biotechnological applications aimed at improving viral resistance are discussed.
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Affiliation(s)
- Livia Stavolone
- Istituto per la Protezione Sostenibile delle Piante, Consiglio Nazionale delle RicercheBari, Italy.,International Institute of Tropical AgricultureIbadan, Nigeria
| | - Vincenzo Lionetti
- Dipartimento di Biologia e Biotecnologie "C. Darwin", "Sapienza" Università di RomaRome, Italy
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24
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Guerriero G, Behr M, Legay S, Mangeot-Peter L, Zorzan S, Ghoniem M, Hausman JF. Transcriptomic profiling of hemp bast fibres at different developmental stages. Sci Rep 2017; 7:4961. [PMID: 28694530 PMCID: PMC5504027 DOI: 10.1038/s41598-017-05200-8] [Citation(s) in RCA: 52] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2017] [Accepted: 05/24/2017] [Indexed: 02/08/2023] Open
Abstract
Bast fibres are long extraxylary cells which mechanically support the phloem and they are divided into xylan- and gelatinous-type, depending on the composition of their secondary cell walls. The former, typical of jute/kenaf bast fibres, are characterized by the presence of xylan and a high degree of lignification, while the latter, found in tension wood, as well as flax, ramie and hemp bast fibres, have a high abundance of crystalline cellulose. During their differentiation, bast fibres undergo specific developmental stages: the cells initially elongate rapidly by intrusive growth, subsequently they cease elongation and start to thicken. The goal of the present study is to provide a transcriptomic close-up of the key events accompanying bast fibre development in textile hemp (Cannabis sativa L.), a fibre crop of great importance. Bast fibres have been sampled from different stem regions. The developmental stages corresponding to active elongation and cell wall thickening have been studied using RNA-Seq. The results show that the fibres sampled at each stem region are characterized by a specific transcriptomic signature and that the major changes in cell wall-related processes take place at the internode containing the snap point. The data generated also identify several interesting candidates for future functional analysis.
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Affiliation(s)
- Gea Guerriero
- Luxembourg Institute of Science and Technology (LIST), Environmental Research and Innovation (ERIN) Department, Esch/Alzette, L-4362, Luxembourg.
| | - Marc Behr
- Luxembourg Institute of Science and Technology (LIST), Environmental Research and Innovation (ERIN) Department, Esch/Alzette, L-4362, Luxembourg
- Université catholique de Louvain, Groupe de Recherche en Physiologie Végétale, Earth and Life Institute-Agronomy, Louvain-la-Neuve, B-1348, Belgium
| | - Sylvain Legay
- Luxembourg Institute of Science and Technology (LIST), Environmental Research and Innovation (ERIN) Department, Esch/Alzette, L-4362, Luxembourg
| | - Lauralie Mangeot-Peter
- Luxembourg Institute of Science and Technology (LIST), Environmental Research and Innovation (ERIN) Department, Esch/Alzette, L-4362, Luxembourg
- Institut National de la Recherche Agronomique, Université de Lorraine, UMR 1136, Interactions Arbres-Microorganismes, Champenoux, F-54280, France
| | - Simone Zorzan
- Luxembourg Institute of Science and Technology (LIST), Environmental Research and Innovation (ERIN) Department, Esch/Alzette, L-4362, Luxembourg
| | - Mohammad Ghoniem
- Luxembourg Institute of Science and Technology (LIST), Environmental Research and Innovation (ERIN) Department, Esch/Alzette, L-4362, Luxembourg
| | - Jean-Francois Hausman
- Luxembourg Institute of Science and Technology (LIST), Environmental Research and Innovation (ERIN) Department, Esch/Alzette, L-4362, Luxembourg
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25
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Capability of tip-growing plant cells to penetrate into extremely narrow gaps. Sci Rep 2017; 7:1403. [PMID: 28469280 PMCID: PMC5431147 DOI: 10.1038/s41598-017-01610-w] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2017] [Accepted: 03/31/2017] [Indexed: 11/08/2022] Open
Abstract
Plant cells are covered with rigid cell walls, yet tip-growing cells can elongate by providing new cell wall material to their apical regions. Studies of the mechanical properties of tip-growing plant cells typically involve measurement of the turgor pressure and stiffness of the cells’ apical regions. These experiments, however, do not address how living tip-growing cells react when they encounter physical obstacles that are not substantially altered by turgor pressure. To investigate this issue, we constructed microfabricated platforms with a series of artificial gaps as small as 1 μm, and examined the capability of tip-growing plant cells, including pollen tubes, root hairs, and moss protonemata, to penetrate into these gaps. The cells were grown inside microfluidic chambers and guided towards the gaps using microdevices customized for each cell type. All types of tip-growing cells could grow through the microgaps with their organelles intact, even though the gaps were much smaller than the cylindrical cell diameter. Our findings reveal the dramatic physiological and developmental flexibility of tip-growing plant cells. The microfluidic platforms designed in this study provide novel tools for the elucidation of the mechanical properties of tip-growing plant cells in extremely small spaces.
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26
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Xu Z, Wang M, Shi D, Zhou G, Niu T, Hahn MG, O'Neill MA, Kong Y. DGE-seq analysis of MUR3-related Arabidopsis mutants provides insight into how dysfunctional xyloglucan affects cell elongation. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2017; 258:156-169. [PMID: 28330559 DOI: 10.1016/j.plantsci.2017.01.005] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2016] [Revised: 11/14/2016] [Accepted: 01/14/2017] [Indexed: 06/06/2023]
Abstract
Our previous study of the Arabidopsis mur3-3 mutant and mutant plants in which the mur3-3 phenotypes are suppressed (xxt2mur3-3, xxt5mur3-3, xxt1xxt2mur3-3 and 35Spro:XLT2:mur3-3) showed that hypocotyl cell elongation is decreased in plants that synthesize galactose-deficient xyloglucan. To obtain genome-wide insight into the transcriptome changes and regulatory networks that may be involved in this decreased elongation, we performed digital gene expression analyses of the etiolated hypocotyls of wild type (WT), mur3-3 and the four suppressor lines. Numerous differentially expressed genes (DEGs) were detected in comparisons between WT and mur3-3 (1423), xxt2mur3-3 and mur3-3 (675), xxt5mur3-3 and mur3-3 (1272), xxt1xxt2mur3-3 and mur3-3 (1197) and 35Spro:XLT2:mur3-3 vs mur3-3 (121). 550 overlapped DEGs were detected among WT vs mur3-3, xxt2mur3-3 vs mur3-3, xxt5mur3-3 vs mur3-3, and xxt1xxt2mur3-3 vs mur3-3 comparisons. These DEGs include 46 cell wall-related genes, 24 transcription factors, 6 hormone-related genes, 9 protein kinase genes and 9 aquaporin genes. The expression of all of the 550 overlapped genes is restored to near wild-type levels in the four mur3-3 suppressor lines. qRT-PCR of fifteen of these 550 genes showed that their expression levels are consistent with the digital gene expression data. Overexpression of some of these genes (XTH4, XTH30, PME3, EXPA11, MYB88, ROT3, AT5G37790, WAG2 and TIP2;3) that are down-regulated in mur3-3 partially rescued the short hypocotyl phenotype but not the aerial phenotype of mur3-3, indicating that different mechanisms exist between hypocotyl cell elongation and leaf cell elongation.
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Affiliation(s)
- Zongchang Xu
- Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, PR China; Graduate School of Chinese Academy of Agricultural Science, Beijing 100081, PR China.
| | - Meng Wang
- Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, PR China; Graduate School of Chinese Academy of Agricultural Science, Beijing 100081, PR China.
| | - Dachuan Shi
- Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, PR China.
| | - Gongke Zhou
- Qingdao Engineering Research Center of Biomass Resources and Environment, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, PR China.
| | - Tiantian Niu
- Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, PR China.
| | - Michael G Hahn
- Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602-4712 USA; Department of Plant Biology, University of Georgia, Athens, GA 30602-4712 USA.
| | - Malcolm A O'Neill
- Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602-4712 USA.
| | - Yingzhen Kong
- Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, PR China.
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27
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Moro CF, Gaspar M, da Silva FR, Pattathil S, Hahn MG, Salgado I, Braga MR. S-nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 (rhd6) mutant of Arabidopsis thaliana. THE NEW PHYTOLOGIST 2017; 213:1771-1786. [PMID: 27880005 DOI: 10.1111/nph.14309] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Accepted: 09/26/2016] [Indexed: 05/18/2023]
Abstract
Nitric oxide (NO) exerts pleiotropic effects on plant development; however, its involvement in cell wall modification during root hair formation (RHF) has not yet been addressed. Here, mutants of Arabidopsis thaliana with altered root hair phenotypes were used to assess the involvement of S-nitrosoglutathione (GSNO), the primary NO source, in cell wall dynamics and gene expression in roots induced to form hairs. GSNO and auxin restored the root hair phenotype of the hairless root hair defective 6 (rhd6) mutant. A positive correlation was observed between increased NO production and RHF induced by auxin in rhd6 and transparent testa glabra (ttg) mutants. Deposition of an epitope within rhamnogalacturonan-I recognized by the CCRC-M2 antibody was delayed in root hair cells (trichoblasts) compared with nonhair cells (atrichoblasts). GSNO, but not auxin, restored the wild-type root glycome and transcriptome profiles in rhd6, modulating the expression of a large number of genes related to cell wall composition and metabolism, as well as those encoding ribosomal proteins, DNA and histone-modifying enzymes and proteins involved in post-translational modification. Our results demonstrate that NO plays a key role in cell wall remodelling in trichoblasts and suggest that it also participates in chromatin modification in root cells of A. thaliana.
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Affiliation(s)
- Camila Fernandes Moro
- Programa de Pós-Graduação em Biologia Celular e Estrutural, Universidade Estadual de Campinas, Campinas, SP, 13083-865, Brazil
| | - Marilia Gaspar
- Núcleo de Pesquisa em Fisiologia e Bioquímica, Instituto de Botânica, São Paulo, SP, 04301-012, Brazil
| | | | - Sivakumar Pattathil
- Complex Carbohydrate Research Center, University of Georgia, Athens, GA, 30602-4712, USA
| | - Michael G Hahn
- Complex Carbohydrate Research Center, University of Georgia, Athens, GA, 30602-4712, USA
| | - Ione Salgado
- Núcleo de Pesquisa em Fisiologia e Bioquímica, Instituto de Botânica, São Paulo, SP, 04301-012, Brazil
- Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas, CP 6109, Campinas, SP, 13083-970, Brazil
| | - Marcia Regina Braga
- Núcleo de Pesquisa em Fisiologia e Bioquímica, Instituto de Botânica, São Paulo, SP, 04301-012, Brazil
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28
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Sharma I, Kaur N, Pati PK. Brassinosteroids: A Promising Option in Deciphering Remedial Strategies for Abiotic Stress Tolerance in Rice. FRONTIERS IN PLANT SCIENCE 2017; 8:2151. [PMID: 29326745 PMCID: PMC5742319 DOI: 10.3389/fpls.2017.02151] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2017] [Accepted: 12/05/2017] [Indexed: 05/03/2023]
Abstract
Rice is an important staple crop as it feeds about a half of the earth's population. It is known to be sensitive to a range of abiotic stresses which result in significant decline in crop productivity. Recently, the use of phytohormones for abiotic stress amelioration has generated considerable interest. Plants adapt to various environmental stresses by undergoing series of changes at physiological and molecular levels which are cooperatively modulated by various phytohormones. Brassinosteroids (BRs) are a class of naturally occurring steroidal phytohormones, best known for their role in plant growth and development. For the past two decades, greater emphasis on studies related to BRs biosynthesis, distribution and signaling has resulted in better understanding of BRs function. Recent advances in the use of contemporary genetic, biochemical and proteomic tools, with a vast array of accessible biological resources has led to an extensive exploration of the key regulatory components in BR signaling networks, thus making it one of the most well-studied hormonal pathways in plants. The present review highlights the advancements of knowledge in BR research and links it with its growing potential in abiotic stress management for important crop like rice.
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29
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Okubo-Kurihara E, Ohtani M, Kurihara Y, Kakegawa K, Kobayashi M, Nagata N, Komatsu T, Kikuchi J, Cutler S, Demura T, Matsui M. Modification of plant cell wall structure accompanied by enhancement of saccharification efficiency using a chemical, lasalocid sodium. Sci Rep 2016; 6:34602. [PMID: 27694977 PMCID: PMC5046155 DOI: 10.1038/srep34602] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2016] [Accepted: 09/15/2016] [Indexed: 11/25/2022] Open
Abstract
The cell wall is one major determinant of plant cell morphology, and is an attractive bioresource. Here, we report a novel strategy to modify plant cell wall property by small molecules. Lasalocid sodium (LS) was isolated by chemical screening to identify molecules that affect the cell morphology of tobacco BY-2 cells. LS treatment led to an increase in cell wall thickness, whilst the quantity and sugar composition of the cell wall remained unchanged in BY-2 cells. The chemical also disordered the cellular arrangement of hypocotyls of Arabidopsis plants, resulting in a decrease in hypocotyl length. LS treatment enhanced enzymatic saccharification efficiency in both BY-2 cells and Arabidopsis plants. Microarray analysis on Arabidopsis showed that exposure to LS upregulated type III peroxidase genes, of which some are involved in lignin biogenesis, and jasmonic acid response genes, and phloroglucinol staining supported the activation of lignification by the LS treatment. As jasmonic acid-mediated lignification is a typical reaction to cell wall damage, it is possible that LS induces cell wall loosening, which can trigger cell wall damage response. Thus, LS is a unique chemical for modification of cell wall and morphology through changes in cell wall architecture.
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Affiliation(s)
- Emiko Okubo-Kurihara
- RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan
| | - Misato Ohtani
- RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan
| | - Yukio Kurihara
- RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan
| | - Koichi Kakegawa
- Forestry and Forest Products Research Institute, Tsukuba, Ibaraki 305–8687, Japan
| | - Megumi Kobayashi
- Faculty of Science, Japan Woman’s University, Bunkyo-ku, Tokyo 112-8681, Japan
| | - Noriko Nagata
- Faculty of Science, Japan Woman’s University, Bunkyo-ku, Tokyo 112-8681, Japan
| | - Takanori Komatsu
- Graduate School of Medical Life Science, Yokohama City University, Yokohama, Kanagawa 230-0045, Japan
| | - Jun Kikuchi
- RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan
- Graduate School of Medical Life Science, Yokohama City University, Yokohama, Kanagawa 230-0045, Japan
| | - Sean Cutler
- Department of Botany and Plant Sciences, Center for Plant Cell Biology, University of California Riverside, 5451 Boyce Hall, Riverside, CA 92521, USA
| | - Taku Demura
- RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan
| | - Minami Matsui
- RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan
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30
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Extraction of High Quality RNA from Cannabis sativa Bast Fibres: A Vademecum for Molecular Biologists. FIBERS 2016. [DOI: 10.3390/fib4030023] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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31
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Stiff MR, Haigler CH. Cotton fiber tips have diverse morphologies and show evidence of apical cell wall synthesis. Sci Rep 2016; 6:27883. [PMID: 27301434 PMCID: PMC4908599 DOI: 10.1038/srep27883] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2016] [Accepted: 05/24/2016] [Indexed: 12/31/2022] Open
Abstract
Cotton fibers arise through highly anisotropic expansion of a single seed epidermal cell. We obtained evidence that apical cell wall synthesis occurs through examining the tips of young elongating Gossypium hirsutum (Gh) and G. barbadense (Gb) fibers. We characterized two tip types in Gh fiber (hemisphere and tapered), each with distinct apical diameter, central vacuole location, and distribution of cell wall components. The apex of Gh hemisphere tips was enriched in homogalacturonan epitopes, including a relatively high methyl-esterified form associated with cell wall pliability. Other wall components increased behind the apex including cellulose and the α-Fuc-(1,2)-β-Gal epitope predominantly found in xyloglucan. Gb fibers had only one narrow tip type featuring characters found in each Gh tip type. Pulse-labeling of cell wall glucans indicated wall synthesis at the apex of both Gh tip types and in distal zones. Living Gh hemisphere and Gb tips ruptured preferentially at the apex upon treatment with wall degrading enzymes, consistent with newly synthesized wall at the apex. Gh tapered tips ruptured either at the apex or distantly. Overall, the results reveal diverse cotton fiber tip morphologies and support primary wall synthesis occurring at the apex and discrete distal regions of the tip.
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Affiliation(s)
- Michael R Stiff
- Department of Crop Science, North Carolina State University, Raleigh, North Carolina 27695 USA
| | - Candace H Haigler
- Department of Crop Science, North Carolina State University, Raleigh, North Carolina 27695 USA.,Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina 27695 USA
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32
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Grumet R, Colle M. Genomic Analysis of Cucurbit Fruit Growth. GENETICS AND GENOMICS OF CUCURBITACEAE 2016. [DOI: 10.1007/7397_2016_4] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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33
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Augustine SM, Cherian AV, Syamaladevi DP, Subramonian N. Erianthus arundinaceus HSP70 (EaHSP70) Acts as a Key Regulator in the Formation of Anisotropic Interdigitation in Sugarcane (Saccharum spp. hybrid) in Response to Drought Stress. PLANT & CELL PHYSIOLOGY 2015; 56:2368-80. [PMID: 26423958 DOI: 10.1093/pcp/pcv142] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2015] [Accepted: 09/22/2015] [Indexed: 05/07/2023]
Abstract
Plant growth during abiotic stress is a long sought-after trait especially in crop plants in the context of global warming and climate change. Previous studies on leaf epidermal cells have revealed that during normal growth and development, adjacent cells interdigitate anisotropically to form cell morphological patterns known as interlocking marginal lobes (IMLs), involving the cell wall-cell membrane-cortical actin continuum. IMLs are growth-associated cell morphological changes in which auxin-binding protein (ABP), Rho GTPases and actin are known to play important roles. In the present study, we investigated the formation of IMLs under drought stress and found that Erianthus arundinaceus, a drought-tolerant wild relative of sugarcane, develops such growth-related cell morphological patterns under drought stress. Using confocal microscopy, we showed an increasing trend in cortical F-actin intensity in drought-tolerant plants with increasing soil moisture stress. In order to check the role of drought tolerance-related genes in IML formation under soil moisture stress, we adopted a structural data mining strategy and identified indirect connections between the ABPs and heat shock proteins (HSPs). Initial experimental evidence for this connection comes from the high transcript levels of HSP70 observed in drought-stressed Erianthus, which developed anisotropic interdigitation, i.e. IMLs. Subsequently, by overexpressing the E. arundinaceus HSP70 gene (EaHSP70) in sugarcane (Saccharum spp. hybrid), we confirm the role of HSP70 in the formation of anisotropic interdigitation under drought stress. Taken together, our results suggest that EaHSP70 acts as a key regulator in the formation of anisotropic interdigitation in drought-tolerant plants (Erianthus and HSP70 transgenic sugarcane) under moisture stress in an actin-mediated pathway. The possible biological significance of the formation of drought-associated interlocking marginal lobes (DaIMLs) in sugarcane plants upon drought stress is discussed.
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Affiliation(s)
| | - Anoop V Cherian
- Present address: Max Planck Institute for Heart and Lungs Research, Bad Nauheim, Germany.
| | - Divya P Syamaladevi
- Sugarcane Breeding Institute, ICAR, Coimbatore 641007, India Present address: Indian Institute of Rice Research, ICAR, Hyderabad, India.
| | - N Subramonian
- Sugarcane Breeding Institute, ICAR, Coimbatore 641007, India
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34
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Thielen M, Speck T, Seidel R. Impact behaviour of freeze-dried and fresh pomelo (Citrus maxima) peel: influence of the hydration state. ROYAL SOCIETY OPEN SCIENCE 2015; 2:140322. [PMID: 26543566 PMCID: PMC4632530 DOI: 10.1098/rsos.140322] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2014] [Accepted: 05/14/2015] [Indexed: 05/25/2023]
Abstract
Pomelos (Citrus maxima) are known for their thick peel which-inter alia-serves as energy dissipator when fruits impact on the ground after being shed. It protects the fruit from splitting open and thus enables the contained seeds to stay germinable and to potentially be dispersed by animal vectors. The main part of the peel consists of a parenchymatous tissue that can be interpreted from a materials point of view as open pored foam whose struts are pressurized and filled with liquid. In order to investigate the influence of the water content on the energy dissipation capacity, drop weight tests were conducted with fresh and with freeze-dried peel samples. Based on the coefficient of restitution it was found that freeze-drying markedly reduces the relative energy dissipation capacity of the peel. Measuring the transmitted force during impact furthermore indicated a transition from a uniform collapse of the foam-like tissue to a progressive collapse due to water extraction. Representing the peel by a Maxwell model illustrates that freeze-drying not only drastically reduces the damping function of the dashpots but also stiffens the springs of the model.
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Affiliation(s)
- Marc Thielen
- Plant Biomechanics Group Freiburg, Botanic Garden, Faculty of Biology, University of Freiburg, Schänzlestrasse 1, Freiburg 79104, Germany
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35
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Zhang L, Yao J, Zhang Y, Liao X, Chen F, Hu X. Microstructural and morphological behaviors of asparagus lettuce cells subject to high pressure processing. Food Res Int 2015. [DOI: 10.1016/j.foodres.2015.01.036] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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36
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Printz B, Dos Santos Morais R, Wienkoop S, Sergeant K, Lutts S, Hausman JF, Renaut J. An improved protocol to study the plant cell wall proteome. FRONTIERS IN PLANT SCIENCE 2015; 6:237. [PMID: 25914713 PMCID: PMC4392696 DOI: 10.3389/fpls.2015.00237] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2015] [Accepted: 03/25/2015] [Indexed: 05/19/2023]
Abstract
Cell wall proteins were extracted from alfalfa stems according to a three-steps extraction procedure using sequentially CaCl2, EGTA, and LiCl-complemented buffers. The efficiency of this protocol for extracting cell wall proteins was compared with the two previously published methods optimized for alfalfa stem cell wall protein analysis. Following LC-MS/MS analysis the three-steps extraction procedure resulted in the identification of the highest number of cell wall proteins (242 NCBInr identifiers) and gave the lowest percentage of non-cell wall proteins (about 30%). However, the three protocols are rather complementary than substitutive since 43% of the identified proteins were specific to one protocol. This three-step protocol was therefore selected for a more detailed proteomic characterization using 2D-gel electrophoresis. With this technique, 75% of the identified proteins were shown to be fraction-specific and 72.7% were predicted as belonging to the cell wall compartment. Although, being less sensitive than LC-MS/MS approaches in detecting and identifying low-abundant proteins, gel-based approaches are valuable tools for the differentiation and relative quantification of protein isoforms and/or modified proteins. In particular isoforms, having variations in their amino-acid sequence and/or carrying different N-linked glycan chains were detected and characterized. This study highlights how the extracting protocols as well as the analytical techniques devoted to the study of the plant cell wall proteome are complementary and how they may be combined to elucidate the dynamism of the plant cell wall proteome in biological studies. Data are available via ProteomeXchange with identifier PXD001927.
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Affiliation(s)
- Bruno Printz
- Environmental Research and Innovation Department, Luxembourg Institute of Science and TechnologyBelvaux, Luxembourg
- Groupe de Recherche en Physiologie Végétale, Earth and Life Institute Agronomy, Universiteì catholique de LouvainLouvain-la-Neuve, Belgium
| | - Raphaël Dos Santos Morais
- Environmental Research and Innovation Department, Luxembourg Institute of Science and TechnologyBelvaux, Luxembourg
| | - Stefanie Wienkoop
- Department for Molecular Systems Biology, University of ViennaVienna, Austria
| | - Kjell Sergeant
- Environmental Research and Innovation Department, Luxembourg Institute of Science and TechnologyBelvaux, Luxembourg
| | - Stanley Lutts
- Groupe de Recherche en Physiologie Végétale, Earth and Life Institute Agronomy, Universiteì catholique de LouvainLouvain-la-Neuve, Belgium
| | - Jean-Francois Hausman
- Environmental Research and Innovation Department, Luxembourg Institute of Science and TechnologyBelvaux, Luxembourg
| | - Jenny Renaut
- Environmental Research and Innovation Department, Luxembourg Institute of Science and TechnologyBelvaux, Luxembourg
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Robbins NE, Dinneny JR. The divining root: moisture-driven responses of roots at the micro- and macro-scale. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:2145-54. [PMID: 25617469 PMCID: PMC4817643 DOI: 10.1093/jxb/eru496] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Water is fundamental to plant life, but the mechanisms by which plant roots sense and respond to variations in water availability in the soil are poorly understood. Many studies of responses to water deficit have focused on large-scale effects of this stress, but have overlooked responses at the sub-organ or cellular level that give rise to emergent whole-plant phenotypes. We have recently discovered hydropatterning, an adaptive environmental response in which roots position new lateral branches according to the spatial distribution of available water across the circumferential axis. This discovery illustrates that roots are capable of sensing and responding to water availability at spatial scales far lower than those normally studied for such processes. This review will explore how roots respond to water availability with an emphasis on what is currently known at different spatial scales. Beginning at the micro-scale, there is a discussion of water physiology at the cellular level and proposed sensory mechanisms cells use to detect osmotic status. The implications of these principles are then explored in the context of cell and organ growth under non-stress and water-deficit conditions. Following this, several adaptive responses employed by roots to tailor their functionality to the local moisture environment are discussed, including patterning of lateral root development and generation of hydraulic barriers to limit water loss. We speculate that these micro-scale responses are necessary for optimal functionality of the root system in a heterogeneous moisture environment, allowing for efficient water uptake with minimal water loss during periods of drought.
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Affiliation(s)
- Neil E Robbins
- Carnegie Institution for Science, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA Department of Biology, Stanford University, 371 Serra Mall, Stanford, CA 94305, USA
| | - José R Dinneny
- Carnegie Institution for Science, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA
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Robbins NE, Dinneny JR. The divining root: moisture-driven responses of roots at the micro- and macro-scale. JOURNAL OF EXPERIMENTAL BOTANY 2015. [PMID: 25617469 DOI: 10.1093/jxb/eru49496] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Water is fundamental to plant life, but the mechanisms by which plant roots sense and respond to variations in water availability in the soil are poorly understood. Many studies of responses to water deficit have focused on large-scale effects of this stress, but have overlooked responses at the sub-organ or cellular level that give rise to emergent whole-plant phenotypes. We have recently discovered hydropatterning, an adaptive environmental response in which roots position new lateral branches according to the spatial distribution of available water across the circumferential axis. This discovery illustrates that roots are capable of sensing and responding to water availability at spatial scales far lower than those normally studied for such processes. This review will explore how roots respond to water availability with an emphasis on what is currently known at different spatial scales. Beginning at the micro-scale, there is a discussion of water physiology at the cellular level and proposed sensory mechanisms cells use to detect osmotic status. The implications of these principles are then explored in the context of cell and organ growth under non-stress and water-deficit conditions. Following this, several adaptive responses employed by roots to tailor their functionality to the local moisture environment are discussed, including patterning of lateral root development and generation of hydraulic barriers to limit water loss. We speculate that these micro-scale responses are necessary for optimal functionality of the root system in a heterogeneous moisture environment, allowing for efficient water uptake with minimal water loss during periods of drought.
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Affiliation(s)
- Neil E Robbins
- Carnegie Institution for Science, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA Department of Biology, Stanford University, 371 Serra Mall, Stanford, CA 94305, USA
| | - José R Dinneny
- Carnegie Institution for Science, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA
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Parrotta L, Guerriero G, Sergeant K, Cai G, Hausman JF. Target or barrier? The cell wall of early- and later-diverging plants vs cadmium toxicity: differences in the response mechanisms. FRONTIERS IN PLANT SCIENCE 2015; 6:133. [PMID: 25814996 PMCID: PMC4357295 DOI: 10.3389/fpls.2015.00133] [Citation(s) in RCA: 224] [Impact Index Per Article: 22.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2014] [Accepted: 02/19/2015] [Indexed: 05/19/2023]
Abstract
Increasing industrialization and urbanization result in emission of pollutants in the environment including toxic heavy metals, as cadmium and lead. Among the different heavy metals contaminating the environment, cadmium raises great concern, as it is ecotoxic and as such can heavily impact ecosystems. The cell wall is the first structure of plant cells to come in contact with heavy metals. Its composition, characterized by proteins, polysaccharides and in some instances lignin and other phenolic compounds, confers the ability to bind non-covalently and/or covalently heavy metals via functional groups. A strong body of evidence in the literature has shown the role of the cell wall in heavy metal response: it sequesters heavy metals, but at the same time its synthesis and composition can be severely affected. The present review analyzes the dual property of plant cell walls, i.e., barrier and target of heavy metals, by taking Cd toxicity as example. Following a summary of the known physiological and biochemical responses of plants to Cd, the review compares the wall-related mechanisms in early- and later-diverging land plants, by considering the diversity in cell wall composition. By doing so, common as well as unique response mechanisms to metal/cadmium toxicity are identified among plant phyla and discussed. After discussing the role of hyperaccumulators' cell walls as a particular case, the review concludes by considering important aspects for plant engineering.
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Affiliation(s)
- Luigi Parrotta
- Dipartimento Scienze della Vita, Università di Siena, Siena, Italy
| | - Gea Guerriero
- Environmental Research and Innovation, Luxembourg Institute of Science and Technology, Esch-sur-Alzette, Luxembourg
| | - Kjell Sergeant
- Environmental Research and Innovation, Luxembourg Institute of Science and Technology, Esch-sur-Alzette, Luxembourg
| | - Giampiero Cai
- Dipartimento Scienze della Vita, Università di Siena, Siena, Italy
| | - Jean-Francois Hausman
- Environmental Research and Innovation, Luxembourg Institute of Science and Technology, Esch-sur-Alzette, Luxembourg
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Moscatelli A, Gagliardi A, Maneta-Peyret L, Bini L, Stroppa N, Onelli E, Landi C, Scali M, Idilli AI, Moreau P. Characterisation of detergent-insoluble membranes in pollen tubes of Nicotiana tabacum (L.). Biol Open 2015; 4:378-99. [PMID: 25701665 PMCID: PMC4359744 DOI: 10.1242/bio.201410249] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Abstract
Pollen tubes are the vehicle for sperm cell delivery to the embryo sac during fertilisation of Angiosperms. They provide an intriguing model for unravelling mechanisms of growing to extremes. The asymmetric distribution of lipids and proteins in the pollen tube plasma membrane modulates ion fluxes and actin dynamics and is maintained by a delicate equilibrium between exocytosis and endocytosis. The structural constraints regulating polarised secretion and asymmetric protein distribution on the plasma membrane are mostly unknown. To address this problem, we investigated whether ordered membrane microdomains, namely membrane rafts, might contribute to sperm cell delivery. Detergent insoluble membranes, rich in sterols and sphingolipids, were isolated from tobacco pollen tubes. MALDI TOF/MS analysis revealed that actin, prohibitins and proteins involved in methylation reactions and in phosphoinositide pattern regulation are specifically present in pollen tube detergent insoluble membranes. Tubulins, voltage-dependent anion channels and proteins involved in membrane trafficking and signalling were also present. This paper reports the first evidence of membrane rafts in Angiosperm pollen tubes, opening new perspectives on the coordination of signal transduction, cytoskeleton dynamics and polarised secretion.
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Affiliation(s)
- Alessandra Moscatelli
- Dipartimento di Bioscienze, Università degli Studi di Milano, Via Celoria 26, 20133 Milan, Italy
| | - Assunta Gagliardi
- Laboratorio di Proteomica Funzionale, Dipartimento di Scienze della Vita, Università degli Studi di Siena, Via Aldo Moro 2, 53100 Siena, Italy
| | - Lilly Maneta-Peyret
- Laboratoire de Biogenèse Membranaire, Université Bordeaux Segalen, 71 Avenue Edouard Bourlaux, 33883 Villenave d'Ornon, France
| | - Luca Bini
- Laboratorio di Proteomica Funzionale, Dipartimento di Scienze della Vita, Università degli Studi di Siena, Via Aldo Moro 2, 53100 Siena, Italy
| | - Nadia Stroppa
- Dipartimento di Bioscienze, Università degli Studi di Milano, Via Celoria 26, 20133 Milan, Italy
| | - Elisabetta Onelli
- Dipartimento di Bioscienze, Università degli Studi di Milano, Via Celoria 26, 20133 Milan, Italy
| | - Claudia Landi
- Laboratorio di Proteomica Funzionale, Dipartimento di Scienze della Vita, Università degli Studi di Siena, Via Aldo Moro 2, 53100 Siena, Italy
| | - Monica Scali
- Dipartimento di Scienze della Vita, Università degli Studi di Siena, Via P. A. Mattioli 4, 53100 Siena, Italy
| | - Aurora Irene Idilli
- Dipartimento di Bioscienze, Università degli Studi di Milano, Via Celoria 26, 20133 Milan, Italy Present address: Institute of Biophysics, National Research Council and FBK, 38123 Trento, Italy
| | - Patrick Moreau
- Laboratoire de Biogenèse Membranaire, Université Bordeaux Segalen, 71 Avenue Edouard Bourlaux, 33883 Villenave d'Ornon, France
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Wilson MH, Holman TJ, Sørensen I, Cancho-Sanchez E, Wells DM, Swarup R, Knox JP, Willats WGT, Ubeda-Tomás S, Holdsworth M, Bennett MJ, Vissenberg K, Hodgman TC. Multi-omics analysis identifies genes mediating the extension of cell walls in the Arabidopsis thaliana root elongation zone. Front Cell Dev Biol 2015; 3:10. [PMID: 25750913 PMCID: PMC4335395 DOI: 10.3389/fcell.2015.00010] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2014] [Accepted: 02/02/2015] [Indexed: 01/05/2023] Open
Abstract
Plant cell wall composition is important for regulating growth rates, especially in roots. However, neither analyses of cell wall composition nor transcriptomes on their own can comprehensively reveal which genes and processes are mediating growth and cell elongation rates. This study reveals the benefits of carrying out multiple analyses in combination. Sections of roots from five anatomically and functionally defined zones in Arabidopsis thaliana were prepared and divided into three biological replicates. We used glycan microarrays and antibodies to identify the major classes of glycans and glycoproteins present in the cell walls of these sections, and identified the expected decrease in pectin and increase in xylan from the meristematic zone (MS), through the rapid and late elongation zones (REZ, LEZ) to the maturation zone and the rest of the root, including the emerging lateral roots. Other compositional changes included extensin and xyloglucan levels peaking in the REZ and increasing levels of arabinogalactan-proteins (AGP) epitopes from the MS to the LEZ, which remained high through the subsequent mature zones. Immuno-staining using the same antibodies identified the tissue and (sub)cellular localization of many epitopes. Extensins were localized in epidermal and cortex cell walls, while AGP glycans were specific to different tissues from root-hair cells to the stele. The transcriptome analysis found several gene families peaking in the REZ. These included a large family of peroxidases (which produce the reactive oxygen species (ROS) needed for cell expansion), and three xyloglucan endo-transglycosylase/hydrolase genes (XTH17, XTH18, and XTH19). The significance of the latter may be related to a role in breaking and re-joining xyloglucan cross-bridges between cellulose microfibrils, a process which is required for wall expansion. Knockdowns of these XTHs resulted in shorter root lengths, confirming a role of the corresponding proteins in root extension growth.
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Affiliation(s)
- Michael H. Wilson
- Centre for Plant Integrative Biology, School of Biosciences, University of NottinghamSutton Bonington, UK
| | - Tara J. Holman
- Centre for Plant Integrative Biology, School of Biosciences, University of NottinghamSutton Bonington, UK
| | - Iben Sørensen
- Plant Glycobiology Section, Department of Plant and Environmental Sciences, University of CopenhagenCopenhagen, Denmark
| | - Ester Cancho-Sanchez
- Centre for Plant Integrative Biology, School of Biosciences, University of NottinghamSutton Bonington, UK
| | - Darren M. Wells
- Centre for Plant Integrative Biology, School of Biosciences, University of NottinghamSutton Bonington, UK
| | - Ranjan Swarup
- Centre for Plant Integrative Biology, School of Biosciences, University of NottinghamSutton Bonington, UK
| | - J. Paul Knox
- Centre for Plant Sciences, Faculty of Biological Sciences, University of LeedsLeeds, UK
| | - William G. T. Willats
- Plant Glycobiology Section, Department of Plant and Environmental Sciences, University of CopenhagenCopenhagen, Denmark
| | - Susana Ubeda-Tomás
- Centre for Plant Integrative Biology, School of Biosciences, University of NottinghamSutton Bonington, UK
| | - Michael Holdsworth
- Centre for Plant Integrative Biology, School of Biosciences, University of NottinghamSutton Bonington, UK
| | - Malcolm J. Bennett
- Centre for Plant Integrative Biology, School of Biosciences, University of NottinghamSutton Bonington, UK
| | - Kris Vissenberg
- Laboratory of Plant Growth and Development, Department of Biology, University of AntwerpAntwerp, Belgium
| | - T. Charlie Hodgman
- Centre for Plant Integrative Biology, School of Biosciences, University of NottinghamSutton Bonington, UK
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Guerriero G, Hausman JF, Ezcurra I. WD40-Repeat Proteins in Plant Cell Wall Formation: Current Evidence and Research Prospects. FRONTIERS IN PLANT SCIENCE 2015; 6:1112. [PMID: 26734023 PMCID: PMC4686805 DOI: 10.3389/fpls.2015.01112] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2015] [Accepted: 11/24/2015] [Indexed: 05/19/2023]
Abstract
The metabolic complexity of living organisms relies on supramolecular protein structures which ensure vital processes, such as signal transduction, transcription, translation and cell wall synthesis. In eukaryotes WD40-repeat (WDR) proteins often function as molecular "hubs" mediating supramolecular interactions. WDR proteins may display a variety of interacting partners and participate in the assembly of complexes involved in distinct cellular functions. In plants, the formation of lignocellulosic biomass involves extensive synthesis of cell wall polysaccharides, a process that requires the assembly of large transmembrane enzyme complexes, intensive vesicle trafficking, interactions with the cytoskeleton, and coordinated gene expression. Because of their function as supramolecular hubs, WDR proteins could participate in each or any of these steps, although to date only few WDR proteins have been linked to the cell wall by experimental evidence. Nevertheless, several potential cell wall-related WDR proteins were recently identified using in silico approaches, such as analyses of co-expression, interactome and conserved gene neighborhood. Notably, some WDR genes are frequently genomic neighbors of genes coding for GT2-family polysaccharide synthases in eukaryotes, and this WDR-GT2 collinear microsynteny is detected in diverse taxa. In angiosperms, two WDR genes are collinear to cellulose synthase genes, CesAs, whereas in ascomycetous fungi several WDR genes are adjacent to chitin synthase genes, chs. In this Perspective we summarize and discuss experimental and in silico studies on the possible involvement of WDR proteins in plant cell wall formation. The prospects of biotechnological engineering for enhanced biomass production are discussed.
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Affiliation(s)
- Gea Guerriero
- Environmental Research and Innovation, Luxembourg Institute of Science and TechnologyEsch-sur-Alzette, Luxembourg
| | - Jean-Francois Hausman
- Environmental Research and Innovation, Luxembourg Institute of Science and TechnologyEsch-sur-Alzette, Luxembourg
| | - Inés Ezcurra
- School of Biotechnology, Division of Industrial Biotechnology, KTH Royal Institute of Technology, AlbaNova University CenterStockholm, Sweden
- *Correspondence: Inés Ezcurra,
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Barbacci A, Magnenet V, Lahaye M. Thermodynamical journey in plant biology. FRONTIERS IN PLANT SCIENCE 2015; 6:481. [PMID: 26175747 PMCID: PMC4485339 DOI: 10.3389/fpls.2015.00481] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2015] [Accepted: 06/15/2015] [Indexed: 05/04/2023]
Abstract
Nonequilibrium irreversible thermodynamics constitute a meaningful point of view suitable to explore life with a rich paradigm. This analytical framework can be used to span the gap from molecular processes to plant function and shows great promise to create a holistic description of life. Since living organisms dissipate energy, exchange entropy and matter with their environment, they can be assimilated to dissipative structures. This concept inherited from nonequilibrium thermodynamics has four properties which defines a scale independent framework suitable to provide a simpler and more comprehensive view of the highly complex plant biology. According to this approach, a biological function is modeled as a cascade of dissipative structures. Each dissipative structure, corresponds to a biological process, which is initiated by the amplification of a fluctuation. Evolution of the process leads to the breakage of the system symmetry and to the export of entropy. Exporting entropy to the surrounding environment corresponds to collecting information about it. Biological actors which break the symmetry of the system and which store information are by consequence, key actors on which experiments and data analysis focus most. This paper aims at illustrating properties of dissipative structure through familiar examples and thus initiating the dialogue between nonequilibrium thermodynamics and plant biology.
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Affiliation(s)
- Adelin Barbacci
- Biopolymers Interactions Assembly, Institut National de la Recherche Agronomique, UR 1268Nantes, France
- Laboratoire des Interactions Plantes Microorganismes, Institut National de la Recherche Agronomique, UMR441Castanet-Tolosan, France
- Laboratoire des Interactions Plantes Microorganismes, Centre Nationale de la Recherche Scientifique, UMR2594Castanet-Tolosan, France
- *Correspondence: Adelin Barbacci, Biopolymers Interactions Assembly, Institut National de la Recherche Agronomique, UR 1268, Rue de la Géraudiére, F-44316 Nantes, France ;
| | - Vincent Magnenet
- Laboratoire des Sciences de l'Ingénieur, de l'Informatique et de l'Imagerie (ICube), Université de Strasbourg, UMR Centre National de la Recherche Scientifique 7357Illkirch, France
| | - Marc Lahaye
- Biopolymers Interactions Assembly, Institut National de la Recherche Agronomique, UR 1268Nantes, France
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Wilson MH, Holman TJ, Sørensen I, Cancho-Sanchez E, Wells DM, Swarup R, Knox JP, Willats WGT, Ubeda-Tomás S, Holdsworth M, Bennett MJ, Vissenberg K, Hodgman TC. Multi-omics analysis identifies genes mediating the extension of cell walls in the Arabidopsis thaliana root elongation zone. Front Cell Dev Biol 2015. [PMID: 25750913 DOI: 10.3389/fcell.2015.00010/abstract] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/25/2023] Open
Abstract
Plant cell wall composition is important for regulating growth rates, especially in roots. However, neither analyses of cell wall composition nor transcriptomes on their own can comprehensively reveal which genes and processes are mediating growth and cell elongation rates. This study reveals the benefits of carrying out multiple analyses in combination. Sections of roots from five anatomically and functionally defined zones in Arabidopsis thaliana were prepared and divided into three biological replicates. We used glycan microarrays and antibodies to identify the major classes of glycans and glycoproteins present in the cell walls of these sections, and identified the expected decrease in pectin and increase in xylan from the meristematic zone (MS), through the rapid and late elongation zones (REZ, LEZ) to the maturation zone and the rest of the root, including the emerging lateral roots. Other compositional changes included extensin and xyloglucan levels peaking in the REZ and increasing levels of arabinogalactan-proteins (AGP) epitopes from the MS to the LEZ, which remained high through the subsequent mature zones. Immuno-staining using the same antibodies identified the tissue and (sub)cellular localization of many epitopes. Extensins were localized in epidermal and cortex cell walls, while AGP glycans were specific to different tissues from root-hair cells to the stele. The transcriptome analysis found several gene families peaking in the REZ. These included a large family of peroxidases (which produce the reactive oxygen species (ROS) needed for cell expansion), and three xyloglucan endo-transglycosylase/hydrolase genes (XTH17, XTH18, and XTH19). The significance of the latter may be related to a role in breaking and re-joining xyloglucan cross-bridges between cellulose microfibrils, a process which is required for wall expansion. Knockdowns of these XTHs resulted in shorter root lengths, confirming a role of the corresponding proteins in root extension growth.
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Affiliation(s)
- Michael H Wilson
- Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham Sutton Bonington, UK
| | - Tara J Holman
- Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham Sutton Bonington, UK
| | - Iben Sørensen
- Plant Glycobiology Section, Department of Plant and Environmental Sciences, University of Copenhagen Copenhagen, Denmark
| | - Ester Cancho-Sanchez
- Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham Sutton Bonington, UK
| | - Darren M Wells
- Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham Sutton Bonington, UK
| | - Ranjan Swarup
- Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham Sutton Bonington, UK
| | - J Paul Knox
- Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds Leeds, UK
| | - William G T Willats
- Plant Glycobiology Section, Department of Plant and Environmental Sciences, University of Copenhagen Copenhagen, Denmark
| | - Susana Ubeda-Tomás
- Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham Sutton Bonington, UK
| | - Michael Holdsworth
- Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham Sutton Bonington, UK
| | - Malcolm J Bennett
- Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham Sutton Bonington, UK
| | - Kris Vissenberg
- Laboratory of Plant Growth and Development, Department of Biology, University of Antwerp Antwerp, Belgium
| | - T Charlie Hodgman
- Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham Sutton Bonington, UK
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Onelli E, Idilli AI, Moscatelli A. Emerging roles for microtubules in angiosperm pollen tube growth highlight new research cues. FRONTIERS IN PLANT SCIENCE 2015; 6:51. [PMID: 25713579 PMCID: PMC4322846 DOI: 10.3389/fpls.2015.00051] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2014] [Accepted: 01/20/2015] [Indexed: 05/21/2023]
Abstract
In plants, actin filaments have an important role in organelle movement and cytoplasmic streaming. Otherwise microtubules (MTs) have a role in restricting organelles to specific areas of the cell and in maintaining organelle morphology. In somatic plant cells, MTs also participate in cell division and morphogenesis, allowing cells to take their definitive shape in order to perform specific functions. In the latter case, MTs influence assembly of the cell wall, controlling the delivery of enzymes involved in cellulose synthesis and of wall modulation material to the proper sites. In angiosperm pollen tubes, organelle movement is generally attributed to the acto-myosin system, the main role of which is in distributing organelles in the cytoplasm and in carrying secretory vesicles to the apex for polarized growth. Recent data on membrane trafficking suggests a role of MTs in fine delivery and repositioning of vesicles to sustain pollen tube growth. This review examines the role of MTs in secretion and endocytosis, highlighting new research cues regarding cell wall construction and pollen tube-pistil crosstalk, that help unravel the role of MTs in polarized growth.
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Affiliation(s)
| | - Aurora I. Idilli
- Institute of Biophysics, National Research Council and Fondazione Bruno Kessler, Trento, Italy
| | - Alessandra Moscatelli
- Department of Biosciences, University of Milan, Milan, Italy
- *Correspondence: Alessandra Moscatelli, Department of Biosciences, University of Milan, Via Celoria, 26, 20113 Milano, Italy e-mail:
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46
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Shabala S, Bose J, Hedrich R. Salt bladders: do they matter? TRENDS IN PLANT SCIENCE 2014; 19:687-91. [PMID: 25361704 DOI: 10.1016/j.tplants.2014.09.001] [Citation(s) in RCA: 155] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2014] [Revised: 08/27/2014] [Accepted: 09/02/2014] [Indexed: 05/02/2023]
Abstract
Soil salinity is claiming about three hectares of arable land from conventional crop farming every minute. At the same time, the challenge of feeding 9.3 billion people by 2050 is forcing agricultural production into marginal areas, and providing sufficient food for this growing population cannot be achieved without a major breakthrough in crop breeding for salinity tolerance. In this Opinion article, we argue that the current trend of targeting Na(+) exclusion mechanisms in breeding programmes for salinity tolerance in crops needs revising. We propose that progress in this area will be achieved by learning from halophytes, naturally salt-loving plants capable of surviving in harsh saline environments, by targeting the mechanisms conferring Na(+) sequestration in external storage organs.
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Affiliation(s)
- Sergey Shabala
- School of Land and Food, University of Tasmania, Hobart, Australia.
| | - Jayakumar Bose
- School of Land and Food, University of Tasmania, Hobart, Australia
| | - Rainer Hedrich
- Institute for Molecular Plant Physiology and Biophysics, Würzburg, Germany.
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