Understanding Forest Health with Remote Sensing -Part I—A Review of Spectral Traits, Processes and Remote-Sensing Characteristics

Monitoring vegetation- and geodiversity with remote sensing and traits

Geodiversity has shaped and structured the Earth's surface at all spatio-temporal scales, not only through long-term processes but also through medium- and short-term processes. Geodiversity is, therefore, a key control and regulating variable in the overall development of landscapes and biodiversity. However, climate change and land use intensity are leading to major changes and disturbances in bio- and geodiversity. For sustainable ecosystem management, temporal, economically viable and standardized monitoring is needed to monitor and model the effects and changes in vegetation- and geodiversity. RS approaches have been used for this purpose for decades. However, to understand in detail how RS approaches capture vegetation- and geodiversity, the aim of this paper is to describe how five features of vegetation- and geodiversity are captured using RS technologies, namely: (i) trait diversity, (ii) phylogenetic/genese diversity, (iii) structural diversity, (iv) taxonomic diversity and (v) functional diversity. Trait diversity is essential for establishing the other four. Traits provide a crucial interface between in situ, close-range, aerial and space-based RS monitoring approaches. The trait approach allows complex data of different types and formats to be linked using the latest semantic data integration techniques, which will enable ecosystem integrity monitoring and modelling in the future. This article is part of the Theo Murphy meeting issue 'Geodiversity for science and society'.

Ecological integrity of tropical secondary forests: concepts and indicators

Naturally regenerating forests or secondary forests (SFs) are a promising strategy for restoring large expanses of tropical forests at low cost and with high environmental benefits. This expectation is supported by the high resilience of tropical forests after natural disturbances, yet this resilience can be severely reduced by human impacts. Assessing the characteristics of SFs and their ecological integrity (EI) is essential to evaluating their role for conservation, restoration, and provisioning of ecosystem services. In this study, we aim to propose a concept and indicators that allow the assessment and classification of the EI of SFs. To this end, we review the literature to assess how EI has been addressed in different ecosystems and which indicators of EI are most commonly used for tropical forests. Building upon this knowledge we propose a modification of the concept of EI to embrace SFs and suggest indicators of EI that can be applied to different successional stages or stand ages. Additionally, we relate these indicators to ecosystem service provision in order to support the practical application of the theory. EI is generally defined as the ability of ecosystems to support and maintain composition, structure and function similar to the reference conditions of an undisturbed ecosystem. This definition does not consider the temporal dynamics of recovering ecosystems, such as SFs. Therefore, we suggest incorporation of an optimal successional trajectory as a reference in addition to the old-growth forest reference. The optimal successional trajectory represents the maximum EI that can be attained at each successional stage in a given region and enables the evaluation of EI at any given age class. We further suggest a list of indicators, the main ones being: compositional indicators (species diversity/richness and indicator species); structural indicators (basal area, heterogeneity of basal area and canopy cover); function indicators (tree growth and mortality); and landscape proxies (landscape heterogeneity, landscape connectivity). Finally, we discuss how this approach can assist in defining the value of SF patches to provide ecosystem services, restore forests and contribute to ecosystem conservation.

Of clockwork and catastrophes: advances in spatiotemporal dynamics of forest Lepidoptera

We applied a systematic global literature survey from the last 2.5 years on spatiotemporal population dynamics - broadly defined - of Lepidopteran forest pests. Articles were summarized according to domain-specific (planetary ecology - remote sensing, evolutionary ecology - genetics and genomics, and theoretical ecology - modeling) contributions to contemporary investigation of the above theme. 'Model systems' dominating our literature survey were native Choristoneura fumiferana and invasive Lymantria dispar. These systems represent opposing ends of a more general equilibrium-disequilibrium gradient, with implications for less-studied taxa. The dynamics of Lepidopteran systems defy simple modeling approaches. Technologies and insights emerging from 'slower' science domains are informing more complex theory, including predictions of spread, impacts, or both posed by more recent invasions and the disrupting effects of climate change.

Quantifying mangrove leaf area index from Sentinel-2 imagery using hybrid models and active learning

Mangrove forests provide vital ecosystem services. The increasing threats to mangrove forest extent and fragmentation can be monitored from space. Accurate spatially explicit quantification of key vegetation characteristics of mangroves, such as leaf area index (LAI), would further advance our monitoring efforts to assess ecosystem health and functioning. Here, we investigated the potential of radiative transfer models (RTM), combined with active learning (AL), to estimate LAI from Sentinel-2 spectral reflectance in the mangrove-dominated region of Ngoc Hien, Vietnam. We validated the retrieval of LAI estimates against in-situ measurements based on hemispherical photography and compared against red-edge NDVI and the Sentinel Application Platform (SNAP) biophysical processor. Our results highlight the performance of physics-based machine learning using Gaussian processes regression (GPR) in combination with AL for the estimation of mangrove LAI. Our AL-driven hybrid GPR model substantially outperformed SNAP (R2 = 0.77 and 0.44 respectively) as well as the red-edge NDVI approach. Comparing two canopy RTMs, the highest accuracy was achieved by PROSAIL (RMSE = 0.13 m2.m-2, NRMSE = 9.57%, MAE = 0.1 m2.m-2). The successful retrieval of mangrove LAI from Sentinel-2 can overcome extensive reliance on scarce in-situ measurements for training seen in other approaches and present a more scalable applicability by relying on the universal principles of physics in combination with uncertainty estimates. AL-based GPR models using RTM simulations allow us to adapt the genericity of RTMs to the peculiarities of distinct ecosystems such as mangrove forests with limited ancillary data. These findings bode potential for retrieving a wider range of vegetation variables to quantify large-scale mangrove ecosystem dynamics in space and time.

Disentangling Soil, Shade, and Tree Canopy Contributions to Mixed Satellite Vegetation Indices in a Sparse Dry Forest

Remote sensing (RS) for vegetation monitoring can involve mixed pixels with contributions from vegetation and background surfaces, causing biases in signals and their interpretations, especially in low-density forests. In a case study in the semi-arid Yatir forest in Israel, we observed a mismatch between satellite (Landsat 8 surface product) and tower-based (Skye sensor) multispectral data and contrasting seasonal cycles in near-infrared (NIR) reflectance. We tested the hypothesis that this mismatch was due to the different fractional contributions of the various surface components and their unique reflectance. Employing an unmanned aerial vehicle (UAV), we obtained high-resolution multispectral images over selected forest plots and estimated the fraction, reflectance, and seasonal cycle of the three main surface components (canopy, shade, and sunlit soil). We determined that the Landsat 8 data were dominated by soil signals (70%), while the tower-based data were dominated by canopy signals (95%). We then developed a procedure to resolve the canopy (i.e., tree foliage) normalized difference vegetation index (NDVI) from the mixed satellite data. The retrieved and corrected canopy-only data resolved the original mismatch and indicated that the spatial variations in Landsat 8 NDVI were due to differences in stand density, while the canopy-only NDVI was spatially uniform, providing confidence in the local flux tower measurements.

Remote Sensing and Phytoecological Methods for Mapping and Assessing Potential Ecosystem Services of the Ouled Hannèche Forest in the Hodna Mountains, Algeria

Regardless of their biogeographic origins or degree of artificialization, the world’s forests are a source of a wide range of ecosystem services (ES). However, the quality and quantity of these services depend on the type of forest studied and its phytogeographic context. Our objective is to transpose the concept of ES, in particular, the assessment of forest ES, to the specific Mediterranean context of the North African mountains, where this issue is still in its infancy and where access to the data needed for assessment remains difficult. Our work presents an introductory approach, allowing us to set up methodological and scientific milestones based on open-access remote sensing data and already tested geospatial processing associated with phytoecological surveys to assess the ES provided by forests in an Algerian study area. Specifically, several indicators used to assess (both qualitatively and quantitatively) the potential ES of the Ouled Hannèche forest, a forest located in the Hodna Mountains, are derived from LANDSAT 8 OLI images from 2017 and an ALOS AW3D30 DSM. The qualitative ES typology is jointly based on an SVM classification of topographically corrected LANDSAT images and a geomorphic-type classification using the geomorphon method. NDVI is a quantitative estimator of many plant ecosystem functions related to ES. It highlights the variations in the provision of ES according to the types of vegetation formations present. It serves as a support for estimating spectral heterogeneity through Rao’s quadratic entropy, which is considered a relative indicator of biodiversity at the landscape scale. The two previous variables (the multitemporal NDVI and Rao’s Q), completed by the Shannon entropy method applied to the geomorphon classes as a proxy for topo-morphological heterogeneity, constitute the input variables of a quantitative map of the potential supply of ES in the forest determined by Spatial Multicriteria Analysis (SMCA). Ultimately, our results serve as a useful basis for land-use planning and biodiversity conservation.

UAV-Based Forest Health Monitoring: A Systematic Review

In recent years, technological advances have led to the increasing use of unmanned aerial vehicles (UAVs) for forestry applications. One emerging field for drone application is forest health monitoring (FHM). Common approaches for FHM involve small-scale resource-extensive fieldwork combined with traditional remote sensing platforms. However, the highly dynamic nature of forests requires timely and repetitive data acquisition, often at very high spatial resolution, where conventional remote sensing techniques reach the limits of feasibility. UAVs have shown that they can meet the demands of flexible operation and high spatial resolution. This is also reflected in a rapidly growing number of publications using drones to study forest health. Only a few reviews exist which do not cover the whole research history of UAV-based FHM. Since a comprehensive review is becoming critical to identify research gaps, trends, and drawbacks, we offer a systematic analysis of 99 papers covering the last ten years of research related to UAV-based monitoring of forests threatened by biotic and abiotic stressors. Advances in drone technology are being rapidly adopted and put into practice, further improving the economical use of UAVs. Despite the many advantages of UAVs, such as their flexibility, relatively low costs, and the possibility to fly below cloud cover, we also identified some shortcomings: (1) multitemporal and long-term monitoring of forests is clearly underrepresented; (2) the rare use of hyperspectral and LiDAR sensors must drastically increase; (3) complementary data from other RS sources are not sufficiently being exploited; (4) a lack of standardized workflows poses a problem to ensure data uniformity; (5) complex machine learning algorithms and workflows obscure interpretability and hinders widespread adoption; (6) the data pipeline from acquisition to final analysis often relies on commercial software at the expense of open-source tools.

The Use of UAV-Acquired Multiband Images for Detecting Rockfall-Induced Injuries at Tree Crown Level

In this paper, we present an identification of rockfall-injured trees based on multiband images obtained by an unmanned aerial vehicle (UAV). A survey with a multispectral camera was performed on three rockfall sites with versatile tree species (Fagus sylvatica L., Larix decidua Mill., Pinus sylvestris L., Picea abies (L.) Karsten, and Abies alba Mill.) and with different characterizations of rockfalls and rockfall-induced injuries. At one site, rockfall injuries were induced in the same year as the survey. At the second site, they were induced one year after the initial injuries, and at the third site, they were induced six years after the first injuries. At one site, surveys were performed three years in a row. Multiband images were used to extract different vegetation indices (VIs) at the tree crown level and were further studied to see which VIs can identify the injured trees and how successfully. A total of 14 VIs were considered, including individual multispectral bands (green, red, red edge, and near-infrared) by using regression models to differentiate between the injured and uninjured groups for a single year and for three consecutive years. The same model was also used for VI differentiations among the recorded injury groups and size of the injuries. The identification of injured trees based on VIs was possible at the sites where rockfall injuries were induced at least one year before the UAV survey, and they could still be identifiable six years after the initial injuries. At the site where injuries were induced only four months before the UAV survey, the identification of injured trees was not possible. VIs that could explain the largest variability (R2 > 0.3) between injured and uninjured trees were: inverse ratio index (IRVI), green–red vegetation index (GRVI), normalized difference vegetation index (NDVI), normalized ratio index (NRVI), and ratio vegetation index (RVI). RVI was the most successful, explaining 40% of the variance at two sites. R2 values only increased by a few percentages (up to 10%) when the VIs of injured trees were observed over a period of three years and mostly did not change significantly, thus not indicating if the vitality of the trees increased or decreased. Differentiation among the injured groups did not show promising results, while, on the other hand, there was a strong correlation between the VI values (RVI) and the size of the injury according to the basal area of the trees (so-called injury index). Both in the case of broadleaves and conifers at two sites, the R2 achieved a value of 0.82. The presented results indicate that the UAV-acquired multiband images at the tree crown level can be used for surveying rockfall protection forests in order to monitor their vitality, which is crucial for maintaining the protective effect through time and space.

UAV-Based Characterization of Tree-Attributes and Multispectral Indices in an Uneven-Aged Mixed Conifer-Broadleaf Forest

Unmanned aerial vehicles (UAVs) have contributed considerably to forest monitoring. However, gaps in the knowledge still remain, particularly for natural forests. Species diversity, stand heterogeneity, and the irregular spatial arrangement of trees provide unique opportunities to improve our perspective of forest stands and the ecological processes that occur therein. In this study, we calculated individual tree metrics, including several multispectral indices, in order to discern the spectral reflectance of a natural stand as a pioneer area in Mexican forests. Using data obtained by UAV DJI 4, and in the free software environments OpenDroneMap and QGIS, we calculated tree height, crown area, number of trees and multispectral indices. Digital photogrammetric procedures, such as the ForestTools, Structure from Motion and Multi-View Stereo algorithms, yielded results that improved stand mapping and the estimation of stand attributes. Automated tree detection and quantification were limited by the presence of overlapping crowns but compensated by the novel stand density mapping and estimates of crown attributes. Height estimation was in line with expectations (R2 = 0.91, RMSE = 0.36) and is therefore a useful parameter with which to complement forest inventories. The diverse spectral indices applied yielded differential results regarding the potential vegetation activity present and were found to be complementary to each other. However, seasonal monitoring and careful estimation of photosynthetic activity are recommended in order to determine the seasonality of plant response. This research contributes to the monitoring of natural forest stands and, coupled with accurate in situ measurements, could refine forest productivity parameters as a strategy for the validity of results. The metrics are reliable and rapid and could serve as model inputs in modern inventories. Nevertheless, increased efforts in the configuration of new technologies and algorithms are required, including full consideration of the costs implied by their adoption.

A Continuous Change Tracker Model for Remote Sensing Time Series Reconstruction

It is hard for current time series reconstruction methods to achieve the balance of high-precision time series reconstruction and explanation of the model mechanism. The goal of this paper is to improve the reconstruction accuracy with a well-explained time series model. Thus, we developed a function-based model, the CCTM (Continuous Change Tracker Model) model, that can achieve high precision in time series reconstruction by tracking the time series variation rate. The goal of this paper is to provide a new solution for high-precision time series reconstruction and related applications. To test the reconstruction effects, the model was applied to four types of datasets: normalized difference vegetation index (NDVI), gross primary productivity (GPP), leaf area index (LAI), and MODIS surface reflectance (MSR). Several new observations are as follows. First, the CCTM model is well explained and based on the second-order derivative theorem, which divides the yearly time series into four variation types including uniform variations, decelerated variations, accelerated variations, and short-periodical variations, and each variation type is represented by a designed function. Second, the CCTM model provides much better reconstruction results than the Harmonic model on the NDVI, GPP, MSR, and LAI datasets for the seasonal segment reconstruction. The combined use of the Savitzky–Golay filter and the CCTM model is better than the combinations of the Savitzky–Golay filter with other models. Third, the Harmonic model has the best trend-fitting ability on the yearly time series dataset, with the highest R-Square and the lowest RMSE among the four function fitting models. However, with seasonal piecewise fitting, the four models all achieved high accuracy, and the CCTM performs the best. Fourth, the CCTM model should also be applied to time series image compression, two compression patterns with 24 coefficients and 6 coefficients respectively are proposed. The daily MSR dataset can achieve a compression ratio of 15 by using the 6-coefficients method. Finally, the CCTM model also has the potential to be applied to change detection, trend analysis, and phenology and seasonal characteristics extractions.

What Is the Effect of Quantitative Inversion of Photosynthetic Pigment Content in Populus euphratica Oliv. Individual Tree Canopy Based on Multispectral UAV Images?

It is highly necessary to apply unmanned aerial vehicle (UAV) remote sensing technology to forest health assessment. To prove the feasibility of quantitative inversion of photosynthetic pigment content (PPC) in Populus euphratica Oliv. individual tree canopy (PeITC) by using multispectral UAV images, in this study, Parrot Sequoia+ multispectral UAV system was manipulated to collect the images of Populus euphratica (Populus euphratica Oliv.) sample plots in Daliyabuyi Oasis from 2019 to 2020, and the canopy PPCs of five Populus euphratica sample trees per plot were determined in six plots. The Populus euphratica crown regions were extracted by grey wolf optimizer-OTSU (GWO-OTSU) multithreshold segmentation algorithm from the normalized difference vegetation index (NDVI) images of Populus euphratica sample plots obtained after preprocessing, and the PeITCs were segmented by multiresolution segmentation algorithm. The mean values of 27 spectral indices in the PeITCs were calculated in each plot, and the optimal model was constructed for quantitative estimation of the PPCs in the PeITCs, then the inversion results were compared and verified based on GF-6 and ZY1-02D satellite imageries respectively. The results were as follows. (1) The average value of canopy chlorophyll content (Chl) was 2.007 mg/g, the mean value of canopy carotenoid content (Car) was 0.703 mg/g. The coefficient of variation (C.V) of both were basically the same and they were both of strong variability. The measured PPCs of the PeITCs in Daliyabuyi Oasis was generally low. The average contents of chlorophyll and carotenoid in PeITC in June were more than twice those in August, while the mean ratio between them was significantly lower in June than in August. The measured PPCs had no obvious spatial distribution law. However, that could prove the rationality of sample selection in this study. (2) NDVI had the best effect of highlighting vegetation among all quadrats in the study area. Based on the GWO-OTSU multithreshold segmentation method, the canopy area of Populus euphratica could be quickly and effectively extracted from the quadrat NDVI map. The best segmentation effect of PeITCs was obtained based on a multiresolution segmentation method when the segmentation scale was 120, the shape index was 0.7, and the compactness index was 0.5. Compared with manual vectorization method of visual interpretation, the root mean square error (RMSE) and Pearson correlation coefficient (R) values of the mean NDVI values in PeITCs obtained by these two methods were 0.038 and 0.951. (3) Only 12 of the 27 spectral indices were significantly correlated with Chl and Car at the significance level of 0.02. Characteristics of the calibration set and validation set were basically consistent with those of the entire set. The classification and regression tree-decision tree (CART-DT) model performed best in the estimation of the PPCs in the PeITCs, in which, when estimating the Car, the calibration coefficient of determination (R2C) was 0.843, the calibration root mean square error (RMSEC) was 0.084, the calibration residual prediction deviation (RPDC) was 2.525, the validation coefficient of determination (R2V) was 0.670, the validation root mean square error (RMSEV) was 0.251, the validation residual prediction deviation (RPDV) was 1.741. (4) Qualitative comparison of spectral reflectance and NDVI values between GF-6 multispectral imagery and Parrot Sequoia+ multispectral image on the 172 PeITCs can show the reliability of Parrot Sequoia+ multispectral image. The comparison results of five PeITCs relative health degree judged by field vision judgment, measured SPAD value, predicted value of Chl (Chlpre), the red edge value calculated by ZY1-02D (ZY1-02Dred edge) and the Carotenoid Reflection Index 2 (CRI2) value calculated by ZY1-02D (ZY1-02DCRI2) can further prove the scientificity of inversion results to a certain extent. These results indicate that multispectral UAV images can be applied for quantitative inversion of PPC in PeITC, which could provide an indicator for the construction of a Populus euphratica individual tree health evaluation indicator system based on UAV remote sensing technology in the next step.

Early Detection of Dendroctonus valens Infestation with Machine Learning Algorithms Based on Hyperspectral Reflectance

The red turpentine beetle (Dendroctonus valens LeConte) has caused severe ecological and economic losses since its invasion into China. It gradually spreads northeast, resulting in many Chinese pine (Pinus tabuliformis Carr.) deaths. Early detection of D. valens infestation (i.e., at the green attack stage) is the basis of control measures to prevent its outbreak and spread. This study examined the changes in spectral reflectance after initial attacking of D. valens. We also explored the possibility of detecting early D. valens infestation based on spectral vegetation indices and machine learning algorithms. The spectral reflectance of infested trees was significantly different from healthy trees (p < 0.05), and there was an obvious decrease in the near-infrared region (760–1386 nm; p < 0.01). Spectral vegetation indices were input into three machine learning classifiers; the classification accuracy was 72.5–80%, while the sensitivity was 65–85%. Several spectral vegetation indices (DID, CUR, TBSI, DDn2, D735, SR1, NSMI, RNIR•CRI550 and RVSI) were sensitive indicators for the early detection of D. valens damage. Our results demonstrate that remote sensing technology could be successfully applied to early detect D. valens infestation and clarify the sensitive spectral regions and vegetation indices, which has important implications for early detection based on unmanned airborne vehicle and satellite data.

Mapping Plant Diversity Based on Combined SENTINEL-1/2 Data—Opportunities for Subtropical Mountainous Forests

Plant diversity is an important parameter in maintaining forest ecosystem services, functions and stability. Timely and accurate monitoring and evaluation of large-area wall-to-wall maps on plant diversity and its spatial heterogeneity are crucial for the conservation and management of forest resources. However, traditional botanical field surveys designed to estimate plant diversity are usually limited in their spatiotemporal resolutions. Using Sentinel-1 (S-1) and Sentinel-2 (S-2) data at high spatiotemporal scales, combined with and referenced to botanical field surveys, may be the best choice to provide accurate plant diversity distribution information over a large area. In this paper, we predicted and mapped plant diversity in a subtropical forest using 24 months of freely and openly available S-1 and S-2 images (10 m × 10 m) data over a large study area (15,290 km2). A total of 448 quadrats (10 m × 10 m) of forestry field surveys were captured in a subtropical evergreen-deciduous broad-leaved mixed forest to validate a machine learning algorithm. The objective was to link the fine Sentinel spectral and radar data to several ground-truthing plant diversity indices in the forests. The results showed that: (1) The Simpson and Shannon-Wiener diversity indices were the best predicted indices using random forest regression, with ȓ2 of around 0.65; (2) The use of S-1 radar data can enhance the accuracy of the predicted heterogeneity indices in the forests by approximately 0.2; (3) As for the mapping of Simpson and Shannon-Wiener, the overall accuracy was 67.4% and 64.2% respectively, while the texture diversity’s overall accuracy was merely 56.8%; (4) From the evaluation and prediction map information, the Simpson, Shannon-Wiener and texture diversity values (and its confidence interval values) indicate spatial heterogeneity in pixel level. The large-area forest plant diversity indices maps add spatially explicit information to the ground-truthing data. Based on the results, we conclude that using the time-series of S-1 and S-2 radar and spectral characteristics, when coupled with limited ground-truthing data, can provide reasonable assessments of plant spatial heterogeneity and diversity across wide areas. It could also help promote forest ecosystem and resource conservation activities in the forestry sector.

Assessing Vegetation Decline Due to Pollution from Solid Waste Management by a Multitemporal Remote Sensing Approach

Nowadays, the huge production of Municipal Solid Waste (MSW) is one of the most strongly felt environmental issues. Consequently, the European Union (EU) delivers laws and regulations for better waste management, identifying the essential requirements for waste disposal operations and the characteristics that make waste hazardous to human health and the environment. In Italy, environmental regulations define, among other things, the characteristics of sites to be classified as “potentially contaminated”. From this perspective, the Basilicata region is currently one of the Italian regions with the highest number of potentially polluted sites in proportion to the number of inhabitants. This research aimed to identify the possible effects of potentially toxic element (PTE) pollution due to waste disposal activities in three “potentially contaminated” sites in southern Italy. The area was affected by a release of inorganic pollutants with values over the thresholds ruled by national/European legislation. Potential physiological efficiency variations of vegetation were analyzed through the multitemporal processing of satellite images. Landsat 5 Thematic Mapper (TM) and Landsat 8 Operational Land Imager (OLI) images were used to calculate the trend in the Normalized Difference Vegetation Index (NDVI) over the years. The multitemporal trends were analyzed using the median of the non-parametric Theil–Sen estimator. Finally, the Mann–Kendall test was applied to evaluate trend significance featuring areas according to the contamination effects on investigated vegetation. The applied procedure led to the exclusion of significant effects on vegetation due to PTEs. Thus, waste disposal activities during previous years do not seem to have significantly affected vegetation around targeted sites.

Investigating the Correlation between Multisource Remote Sensing Data for Predicting Potential Spread of Ips typographus L. Spots in Healthy Trees

In the last decade, thousands of hectares of forests have been lost in the Czech Republic, primarily related to European spruce bark beetle (Ips typographus L.), while more than 50% of the remaining Czech forests are in great danger, thus posing severe threats to the resilience, stability, and functionality of those forests. The role of remote sensing in monitoring dynamic structural changes caused by pests is essential to understand and sustainably manage these forests. This study hypothesized a possible correlation between tree health status and multisource time series remote sensing data using different processed layers to predict the potential spread of attack by European spruce bark beetle in healthy trees. For this purpose, we used WorldView-2, Pléiades 1B, and SPOT-6 images for the period of April to September from 2018 to 2020; unmanned aerial vehicle (UAV) imagery data were also collected for use as a reference data source. Our results revealed that spectral resolution is crucial for the early detection of infestation. We observed a significant difference in the reflectance of different health statuses, which can lead to the early detection of infestation as much as two years in advance. More specifically, several bands from two different satellites in 2018 perfectly predicted the health status classes from 2020. This method could be used to evaluate health status classes in the early stage of infestation over large forested areas, which would provide a better understanding of the current situation and information for decision making and planning for the future.

Monitoring Fine-Scale Forest Health Using Unmanned Aerial Systems (UAS) Multispectral Models

Forest disturbances—driven by pests, pathogens, and discrete events—have led to billions of dollars in lost ecosystem services and management costs. To understand the patterns and severity of these stressors across complex landscapes, there must be an increase in reliable data at scales compatible with management actions. Unmanned aerial systems (UAS or UAV) offer a capable platform for collecting local scale (e.g., individual tree) forestry data. In this study, we evaluate the capability of UAS multispectral imagery and freely available National Agricultural Imagery Program (NAIP) imagery for differentiating coniferous healthy, coniferous stressed, deciduous healthy, deciduous stressed, and degraded individual trees throughout a complex, mixed-species forests. These methods are first compared to assessments of crown vigor in the field, to evaluate the potential in supplementing this resource intensive practice. This investigation uses the random forest and support vector machine (SVM) machine learning algorithms to classify the imagery into the five forest health classes. Using the random forest classifier, the UAS imagery correctly classified five forest Health classes with an overall accuracy of 65.43%. Using similar methods, the high-resolution airborne NAIP imagery achieved an overall accuracy of 50.50% for the five health classes, a reduction of 14.93%. When these classes were generalized to healthy, stressed, and degraded trees, the accuracy improved to 71.19%, using UAS imagery, and 70.62%, using airborne imagery. Further analysis into the precise calibration of UAS multispectral imagery, a refinement of image segmentation methods, and the fusion of these data with more widely distributed remotely sensed imagery would further enhance the potential of these methods to more effectively and efficiently collect forest health information from the UAS instead of using field methods.

Mapping European Spruce Bark Beetle Infestation at Its Early Phase Using Gyrocopter-Mounted Hyperspectral Data and Field Measurements

The prolonged drought of recent years combined with the steadily increasing bark beetle infestation (Ips typographus) is causing enormous damage in Germany’s spruce forests. This preliminary study investigates whether early spruce infestation by the bark beetle (green attack) can be detected using indices based on airborne spatial high-resolution (0.3 m) hyperspectral data and field spectrometer measurements. In particular, a new hyperspectral index based on airborne data has been defined and compared with other common indices for bark beetle detection. It shows a very high overall accuracy (OAA = 98.84%) when validated with field data. Field measurements and a long-term validation in a second study area serve the validation of the robustness and transferability of the index to other areas. In comparison with commonly used indices, the defined index has the ability to detect a larger proportion of infested spruces in the green attack phase (60% against 20% for commonly used indices). This index confirms the high potential of the red-edge domain to distinguish infested spruces at an early stage. Overall, our index has great potential for forest preservation strategies aimed at the detection of infested spruces in order to mitigate the outbreaks.

Combining Heat Stress with Pre-Existing Drought Exacerbated the Effects on Chlorophyll Fluorescence Rise Kinetics in Four Contrasting Plant Species

Although drought and high temperature are two main factors affecting crop productivity and forest vegetation dynamics in many areas worldwide, little work has been done to describe the effects of heat combined with pre-existing drought on photochemical function in diverse plant species. This study investigated the biophysical status of photosystem II (PSII) and its dynamic responses under 2-day heat stress during a 2-week drought by measuring the polyphasic chlorophyll fluorescence rise (OJIP) kinetics. This study examined four contrasting species: a C3 crop/grass (wheat), a C4 crop/grass (sorghum), a temperate tree species (Fraxinus chinensis) and a tropical tree species (Radermachera sinica). Principal component analysis showed that the combination of heat and drought deviated from the effect of heat or drought alone. For all four species, a linear mixed-effects model analysis of variance of the OJIP parameters showed that the deviation arose from decreased quantum yield and increased heat dissipation of PSII. The results confirmed, in four contrasting plant species, that heat stress, when combined with pre-existing drought, exacerbated the effects on PSII photochemistry. These findings provide direction to future research and applications of chlorophyll fluorescence rise OJIP kinetics in agriculture and forestry, for facing increasingly more severe intensity and duration of both heat and drought events under climate change.

The Role of Remote Sensing for the Assessment and Monitoring of Forest Health: A Systematic Evidence Synthesis

Forests are increasingly subject to a number of disturbances that can adversely influence their health. Remote sensing offers an efficient alternative for assessing and monitoring forest health. A myriad of methods based upon remotely sensed data have been developed, tailored to the different definitions of forest health considered, and covering a broad range of spatial and temporal scales. The purpose of this review paper is to identify and analyse studies that addressed forest health issues applying remote sensing techniques, in addition to studying the methodological wealth present in these papers. For this matter, we applied the PRISMA protocol to seek and select studies of our interest and subsequently analyse the information contained within them. A final set of 107 journal papers published between 2015 and 2020 was selected for evaluation according to our filter criteria and 20 selected variables. Subsequently, we pair-wise exhaustively read the journal articles and extracted and analysed the information on the variables. We found that (1) the number of papers addressing this issue have consistently increased, (2) that most of the studies placed their study area in North America and Europe and (3) that satellite-borne multispectral sensors are the most commonly used technology, especially from Landsat mission. Finally, most of the studies focused on evaluating the impact of a specific stress or disturbance factor, whereas only a small number of studies approached forest health from an early warning perspective.

A Systematic Review on the Integration of Remote Sensing and GIS to Forest and Grassland Ecosystem Health Attributes, Indicators, and Measures

It is important to protect forest and grassland ecosystems because they are ecologically rich and provide numerous ecosystem services. Upscaling monitoring from local to global scale is imperative in reaching this goal. The SDG Agenda does not include indicators that directly quantify ecosystem health. Remote sensing and Geographic Information Systems (GIS) can bridge the gap for large-scale ecosystem health assessment. We systematically reviewed field-based and remote-based measures of ecosystem health for forests and grasslands, identified the most important ones and provided an overview on remote sensing and GIS-based measures. We included 163 English language studies within terrestrial non-tropical biomes and used a pre-defined classification system to extract ecological stressors and attributes, collected corresponding indicators, measures, and proxy values. We found that the main ecological attributes of each ecosystem contribute differently in the literature, and that almost half of the examined studies used remote sensing to estimate indicators. The major stressor for forests was “climate change”, followed by “insect infestation”; for grasslands it was “grazing”, followed by “climate change”. “Biotic interactions, composition, and structure” was the most important ecological attribute for both ecosystems. “Fire disturbance” was the second most important for forests, while for grasslands it was “soil chemistry and structure”. Less than a fifth of studies used vegetation indices; NDVI was the most common. There are monitoring inconsistencies from the broad range of indicators and measures. Therefore, we recommend a standardized field, GIS, and remote sensing-based approach to monitor ecosystem health and integrity and facilitate land managers and policy-makers.

Multi-Model Approaches to the Spatialization of Tree Vitality Surveys: Constructing a National Tree Vitality Map

It is essential to maintain the health of forests so that they are protected against a diverse range of stressors and show improved resilience. An area-based forest health map is required for efficient forest management on a national scale however, most national forest inventories are based on in-situ observations. This study examined methodologies to establish an area-based map on tree vitality grade using field survey data, particularly that containing information on several trees at one point. The forest health monitoring dataset of the Republic of Korea was used in combination with 37 satellite-based environmental predictors. Four methods were considered: Multinomial logistic regression (MLR), random forest classification (RF), indicator kriging (IK), and multi-model ensemble (MME) approaches using species distribution models. The MLR and RF produced biased results, whereby almost all regions were classified as first grade; the spatialization results of these methods were considered inappropriate for forest management. The maps produced using the IK and MME methods improved the distinctions between the distributions of five grades compared to the previous two methodologies however, the MME method produced better results, reliably reflecting topographical and climatic characteristics. Comparisons with the vegetation condition index and bioclimate vulnerability index also emphasized the usefulness of the MME. This study is particularly relevant to the national forest managers who struggle to find the most effective forest monitoring and management strategies. Suggestions to improve spatialization of field survey data are further discussed.

Estimating Primary Forest Attributes and Rare Community Characteristics Using Unmanned Aerial Systems (UAS): An Enrichment of Conventional Forest Inventories

The techniques for conducting forest inventories have been established over centuries of land management and conservation. In recent decades, however, compelling new tools and methodologies in remote sensing, computer vision, and data science have offered innovative pathways for enhancing the effectiveness and comprehension of these sampling designs. Now with the aid of Unmanned Aerial Systems (UAS) and advanced image processing techniques, we have never been closer to mapping forests at field-based inventory scales. Our research, conducted in New Hampshire on complex mixed-species forests, used natural color UAS imagery for estimating individual tree diameters (diameter at breast height (dbh)) as well as stand level estimates of Basal Area per Hectare (BA/ha), Quadratic Mean Diameter (QMD), Trees per Hectare (TPH), and a Stand Density Index (SDI) using digital photogrammetry. To strengthen our understanding of these forests, we also assessed the proficiency of the UAS to map the presence of large trees (i.e., >40 cm in diameter). We assessed the proficiency of UAS digital photogrammetry for identifying large trees in two ways: (1) using the UAS estimated dbh and the 40 cm size threshold and (2) using a random forest supervised classification and a combination of spectral, textural, and geometric features. Our UAS-based estimates of tree diameter reported an average error of 19.7% to 33.7%. At the stand level, BA/ha and QMD were overestimated by 42.18% and 62.09%, respectively, while TPH and SDI were underestimated by 45.58% and 3.34%. When considering only stands larger than 9 ha however, the overestimation of BA/ha at the stand level dropped to 14.629%. The overall classification of large trees, using the random forest supervised classification achieved an overall accuracy of 85%. The efficiency and effectiveness of these methods offer local land managers the opportunity to better understand their forested ecosystems. Future research into individual tree crown detection and delineation, especially for co-dominant or suppressed trees, will further support these efforts.

A Novel Multi-Scale Attention PFE-UNet for Forest Image Segmentation

The precise segmentation of forest areas is essential for monitoring tasks related to forest exploration, extraction, and statistics. However, the effective and accurate segmentation of forest images will be affected by factors such as blurring and discontinuity of forest boundaries. Therefore, a Pyramid Feature Extraction-UNet network (PFE-UNet) based on traditional UNet is proposed to be applied to end-to-end forest image segmentation. Among them, the Pyramid Feature Extraction module (PFE) is introduced in the network transition layer, which obtains multi-scale forest image information through different receptive fields. The spatial attention module (SA) and the channel-wise attention module (CA) are applied to low-level feature maps and PFE feature maps, respectively, to highlight specific segmentation task features while fusing context information and suppressing irrelevant regions. The standard convolution block is replaced by a novel depthwise separable convolutional unit (DSC Unit), which not only reduces the computational cost but also prevents overfitting. This paper presents an extensive evaluation with the DeepGlobe dataset and a comparative analysis with several state-of-the-art networks. The experimental results show that the PFE-UNet network obtains an accuracy of 94.23% in handling the real-time forest image segmentation, which is significantly higher than other advanced networks. This means that the proposed PFE-UNet also provides a valuable reference for the precise segmentation of forest images.

Inferring Grassland Drought Stress with Unsupervised Learning from Airborne Hyperspectral VNIR Imagery

The 2018–2019 Central European drought had a grave impact on natural and managed ecosystems, affecting their health and productivity. We examined patterns in hyperspectral VNIR imagery using an unsupervised learning approach to improve ecosystem monitoring and the understanding of grassland drought responses. The main objectives of this study were (1) to evaluate the application of simplex volume maximisation (SiVM), an unsupervised learning method, for the detection of grassland drought stress in high-dimensional remote sensing data at the ecosystem scale and (2) to analyse the contributions of different spectral plant and soil traits to the computed stress signal. The drought status of the research site was assessed with a non-parametric standardised precipitation–evapotranspiration index (SPEI) and soil moisture measurements. We used airborne HySpex VNIR-1800 data from spring 2018 and 2019 to compare vegetation condition at the onset of the drought with the state after one year. SiVM, an interpretable matrix factorisation technique, was used to derive typical extreme spectra (archetypes) from the hyperspectral data. The classification of archetypes allowed for the inference of qualitative drought stress levels. The results were evaluated using a set of geophysical measurements and vegetation indices as proxy variables for drought-inhibited vegetation growth. The successful application of SiVM for grassland stress detection at the ecosystem canopy scale was verified in a correlation analysis. The predictor importance was assessed with boosted beta regression. In the resulting interannual stress model, carotenoid-related variables had among the highest coefficient values. The significance of the photochemical reflectance index that uses 512 nm as reference wavelength (PRI512) demonstrates the value of combining imaging spectrometry and unsupervised learning for the monitoring of vegetation stress. It also shows the potential of archetypical reflectance spectra to be used for the remote estimation of photosynthetic efficiency. More conclusive results could be achieved by using vegetation measurements instead of proxy variables for evaluation. It must also be investigated how the method can be generalised across ecosystems.

Evaluating the effect of stand properties and site conditions on the forest reflectance from Sentinel-2 time series

Forest stand reflectance at the canopy level results from various factors, such as vegetation chemical properties, leaf morphology, canopy structure, and tree sizes. These factors are dependent on the species, age, and health statuses of trees, as well as the site conditions. Sentinel-2 imagery with the high spatial, spectral, and temporal resolution, has enabled analysis of the relationships between vegetation properties and their spectral responses at large spatial scales. A comprehensive study of these relationships is needed to understand the drivers of vegetation spectral patterns and is essential from the point of view of remote sensing data interpretation. Our study aimed to quantify the site and forest parameters affecting forest stands reflectance. The analysis was conducted for common beech-, silver fir- and Scots pine-dominated stands in a mountainous area of the Polish Carpathians. The effect of stands and site properties on reflectance in different parts of the growing season was captured using the dense time series provided by Sentinel-2 from 2018-2019. The results indicate that the reflectance of common beech stands is mainly influenced by elevation, particularly during spring and autumn. Other factors influencing beech stand reflectance include the share of the broadleaved understory, aspect, and, during summer, the age of stands. The reflectance of coniferous species, i.e., Scots pine and silver fir, is mainly influenced by the age and stand properties, namely the crown closure and stand density. The age is a primary driver for silver fir stands reflectance changes, while the stand properties have a large impact on Scots pine stands reflectance. Also, the understory influences Scots pine stands reflectance, while there appears to be no impact on silver fir stands. The influence of the abovementioned factors is highly diverse, depending on the used band and time of the season.

Past and present individual-tree damage assessments of the US national forest inventory

Identifying the signs and symptoms of pathogens, insects, and other biotic and abiotic agents provides valuable information about the absolute and relative impacts of different types of damage across the forest landscape. In the USA, damage collection protocols have been included in various forms since the initiation of state-level forest surveys in the early twentieth century; however, changes in the protocols over time have made it difficult for the data to be used to its full potential. This article outlines differences in protocols across inventory regions, changes in protocols over time, and limitations and utility of the data so that those interested in using the US national forest inventory database will better understand what data are available and how they have been and can be used.

Gap-Free Monitoring of Annual Mangrove Forest Dynamics in Ca Mau Province, Vietnamese Mekong Delta, Using the Landsat-7-8 Archives and Post-Classification Temporal Optimization

Ecosystem services offered by mangrove forests are facing severe risks, particularly through land use change driven by human development. Remote sensing has become a primary instrument to monitor the land use dynamics surrounding mangrove ecosystems. Where studies formerly relied on bi-temporal assessments of change, the practical limitations concerning data-availability and processing power are slowly disappearing with the onset of high-performance computing (HPC) and cloud-computing services, such as in the Google Earth Engine (GEE). This paper combines the capabilities of GEE, including its entire Landsat-7 and Landsat-8 archives and state-of-the-art classification approaches, with a post-classification temporal analysis to optimize land use classification results into gap-free and consistent information. The results demonstrate its application and value to uncover the spatio-temporal dynamics of mangrove forests and land use changes in Ngoc Hien District, Ca Mau province, Vietnamese Mekong delta. The combination of repeated GEE classification output and post-classification optimization provides valid spatial classification (94–96% accuracy) and temporal interpolation (87–92% accuracy). The findings reveal that the net change of mangroves forests over the 2001–2019 period equals −0.01% annually. The annual gap-free maps enable spatial identification of hotspots of mangrove forest changes, including deforestation and degradation. Post-classification temporal optimization allows for an exploitation of temporal patterns to synthesize and enhance independent classifications towards more robust gap-free spatial maps that are temporally consistent with logical land use transitions. The study contributes to a growing body of work advocating full exploitation of temporal information in optimizing land cover classification and demonstrates its use for mangrove forest monitoring.

Linking the Remote Sensing of Geodiversity and Traits Relevant to Biodiversity—Part II: Geomorphology, Terrain and Surfaces

The status, changes, and disturbances in geomorphological regimes can be regarded as controlling and regulating factors for biodiversity. Therefore, monitoring geomorphology at local, regional, and global scales is not only necessary to conserve geodiversity, but also to preserve biodiversity, as well as to improve biodiversity conservation and ecosystem management. Numerous remote sensing (RS) approaches and platforms have been used in the past to enable a cost-effective, increasingly freely available, comprehensive, repetitive, standardized, and objective monitoring of geomorphological characteristics and their traits. This contribution provides a state-of-the-art review for the RS-based monitoring of these characteristics and traits, by presenting examples of aeolian, fluvial, and coastal landforms. Different examples for monitoring geomorphology as a crucial discipline of geodiversity using RS are provided, discussing the implementation of RS technologies such as LiDAR, RADAR, as well as multi-spectral and hyperspectral sensor technologies. Furthermore, data products and RS technologies that could be used in the future for monitoring geomorphology are introduced. The use of spectral traits (ST) and spectral trait variation (STV) approaches with RS enable the status, changes, and disturbances of geomorphic diversity to be monitored. We focus on the requirements for future geomorphology monitoring specifically aimed at overcoming some key limitations of ecological modeling, namely: the implementation and linking of in-situ, close-range, air- and spaceborne RS technologies, geomorphic traits, and data science approaches as crucial components for a better understanding of the geomorphic impacts on complex ecosystems. This paper aims to impart multidimensional geomorphic information obtained by RS for improved utilization in biodiversity monitoring.

Ability of Remote Sensing Systems to Detect Bark Beetle Spots in the Southeastern US

Research Highlights: Sentinel-2 Normalized Difference Vegetation Index (NDVI) products show greater potential to detect indications of disturbance by bark beetles in the southeastern US than Moderate Resolution Imaging Spectroradiometer (MODIS), as the high spatiotemporal heterogeneity of the southeastern forest land prevents its deployment at the current resolution. Background and Objectives: Remote sensing technologies have been an essential tool to detect forest disturbances caused by insect pests through spectral trait variation. In the US, coordinated efforts such as ForWarn, led by the US Forest Service and based on MODIS satellite data, are used to monitor biotic and abiotic disturbances. Because of the particular characteristics of the southeastern US landscape, including forest fragmentation and rapid forest turnover due to management, detection and visualization of small bark beetle spots using remote sensing technology developed for more homogeneous landscapes has been challenging. Here, we assess the ability of MODIS and Sentinel-2 time-series vegetation index data products to detect bark beetle spots in the Florida Panhandle. Materials and Methods: We compared ForWarn’s detection ability (lower resolution images) with that of Sentinel-2 (higher resolution images) using bark beetle spots confirmed by aerial surveys and ground checks by the Florida Forest Service. Results: MODIS and Sentinel-2 can detect damage produced by bark beetles in the southeastern US, but MODIS detection via NDVI change exhibits a high degree of false negatives (30%). Sentinel-2 NDVI products show greater potential for identifying indications of disturbance by bark beetles than MODIS change maps, with Sentinel-2 capturing negative changes in NDVI for all spots. Conclusions: Our research shows that for practical bark beetle detection via remote sensing, higher spatial and temporal resolution will be needed.

Leveraging OSM and GEOBIA to Create and Update Forest Type Maps

Up-to-date information about the type and spatial distribution of forests is an essential element in both sustainable forest management and environmental monitoring and modelling. The OpenStreetMap (OSM) database contains vast amounts of spatial information on natural features, including forests (landuse=forest). The OSM data model includes describing tags for its contents, i.e., leaf type for forest areas (i.e., leaf_type=broadleaved). Although the leaf type tag is common, the vast majority of forest areas are tagged with the leaf type mixed, amounting to a total area of 87% of landuse=forests from the OSM database. These areas comprise an important information source to derive and update forest type maps. In order to leverage this information content, a methodology for stratification of leaf types inside these areas has been developed using image segmentation on aerial imagery and subsequent classification of leaf types. The presented methodology achieves an overall classification accuracy of 85% for the leaf types needleleaved and broadleaved in the selected forest areas. The resulting stratification demonstrates that through approaches, such as that presented, the derivation of forest type maps from OSM would be feasible with an extended and improved methodology. It also suggests an improved methodology might be able to provide updates of leaf type to the OSM database with contributor participation.

Landsat-Based Indices Reveal Consistent Recovery of Forested Stream Catchments from Acid Deposition

Central European forests suffered from severe, large-scale atmospheric depositions of sulfur and nitrogen due to coal-based energy production during the 20th century. High deposition of acid compounds distorted soil chemistry and had negative effects on forest physiology and growth. Since 1994, continuous data on atmospheric deposition and stream runoff fluxes have provided evidence of ecosystem recovery from acidification. In this study, we combined for the first time mass budget data (sulfur deposition and total dissolved inorganic nitrogen (DIN) export) from the GEOMON monitoring network of headwater catchments with annual trajectories of vegetation indices derived from Landsat remote sensing observations. Time series of selected vegetation indices was constructed from Landsat 5, 7, and 8 using Google Earth Engine. Linear regression between the field data and vegetation indices was analyzed using R software. Biogeochemical responses of the forested catchment to declining acid deposition (driven by SO2 emission reduction) were consistent across all catchments covering various forest stands from different regions of the Czech Republic. Significant correlations were found with total sulfur depositions, suggesting that the forests are continuously and consistently prospering from reductions in acid deposition. Disturbance index (DI) was the only vegetation index that was well-related to changes in forest cover associated with salvage loggings (due to the forest decline) during the 1980s and 1990s. A significant relationship (R2 = 0.82) was found between the change in DI and DIN export in stream water. Regrowth of young forests in these highly affected areas tracks the most pronounced changes in total DIN export, suggesting a prominent role of vegetation in nitrogen retention. With the Landsat-derived DI, we could map decennial changes in forest disturbances beyond the small scale of the catchments to the regional level (demonstrated here for two protected landscape areas). This analysis showed the peak in forest disturbances to have occurred around the mid-1990s, followed by forest recovery and regrowth. Despite the improvement in forest ecosystem functioning over the past three decades in mountainous areas, emerging threats connected to changing climate will shape forest development in the near future.

Stress Detection in New Zealand Kauri Canopies with WorldView-2 Satellite and LiDAR Data

New Zealand kauri trees are threatened by the kauri dieback disease (Phytophthora agathidicida (PA)). In this study, we investigate the use of pan-sharpened WorldView-2 (WV2) satellite and Light Detection and Ranging (LiDAR) data for detecting stress symptoms in the canopy of kauri trees. A total of 1089 reference crowns were located in the Waitakere Ranges west of Auckland and assessed by fieldwork and the interpretation of aerial images. Canopy stress symptoms were graded based on five basic stress levels and further refined for the first symptom stages. The crown polygons were manually edited on a LiDAR crown height model. Crowns with a mean diameter smaller than 4 m caused most outliers with the 1.8 m pixel size of the WV2 multispectral bands, especially at the more advanced stress levels of dying and dead trees. The exclusion of crowns with a diameter smaller than 4 m increased the correlation in an object-based random forest regression from 0.85 to 0.89 with only WV2 attributes (root mean squared error (RMSE) of 0.48, mean absolute error (MAE) of 0.34). Additional LiDAR attributes increased the correlation to 0.92 (RMSE of 0.43, MAE of 0.31). A red/near-infrared (NIR) normalised difference vegetation index (NDVI) and a ratio of the red and green bands were the most important indices for an assessment of the full range of stress symptoms. For detection of the first stress symptoms, an NDVI on the red-edge and green bands increased the performance. This study is the first to analyse the use of spaceborne images for monitoring canopy stress symptoms in native New Zealand kauri forest. The method presented shows promising results for a cost-efficient stress monitoring of kauri crowns over large areas. It will be tested in a full processing chain with automatic kauri identification and crown segmentation.

Evaluating Prediction Models for Mapping Canopy Chlorophyll Content Across Biomes

Accurate measurement of canopy chlorophyll content (CCC) is essential for the understanding of terrestrial ecosystem dynamics through monitoring and evaluating properties such as carbon and water flux, productivity, light use efficiency as well as nutritional and environmental stresses. Information on the amount and distribution of CCC helps to assess and report biodiversity indicators related to ecosystem processes and functional aspects. Therefore, measuring CCC continuously and globally from earth observation data is critical to monitor the status of the biosphere. However, generic and robust methods for regional and global mapping of CCC are not well defined. This study aimed at examining the spatiotemporal consistency and scalability of selected methods for CCC mapping across biomes. Four methods (i.e., radiative transfer models (RTMs) inversion using a look-up table (LUT), the biophysical processor approach integrated into the Sentinel application platform (SNAP toolbox), simple ratio vegetation index (SRVI), and partial least square regression (PLSR)) were evaluated. Similarities and differences among CCC products generated by applying the four methods on actual Sentinel-2 data in four biomes (temperate forest, tropical forest, wetland, and Arctic tundra) were examined by computing statistical measures and spatiotemporal consistency pairwise comparisons. Pairwise comparison of CCC predictions by the selected methods demonstrated strong agreement. The highest correlation (R2 = 0.93, RMSE = 0.4371 g/m2) was obtained between CCC predictions of PROSAIL inversion by LUT and SNAP toolbox approach in a wetland when a single Sentinel-2 image was used. However, when time-series data were used, it was PROSAIL inversion against SRVI (R2 = 0.88, RMSE = 0.19) that showed greatest similarity to the single date predictions (R2 = 0.83, RMSE = 0.17 g/m2) in this biome. Generally, the CCC products obtained using the SNAP toolbox approach resulted in a systematic over/under-estimation of CCC. RTMs inversion by LUT (INFORM and PROSAIL) resulted in a non-biased, spatiotemporally consistent prediction of CCC with a range closer to expectations. Therefore, the RTM inversion using LUT approaches particularly, INFORM for ‘forest’ and PROSAIL for ‘short vegetation’ ecosystems, are recommended for CCC mapping from Sentinel-2 data for worldwide mapping of CCC. Additional validation of the two RTMs with field data of CCC across biomes is required in the future.

Monitoring of Canopy Stress Symptoms in New Zealand Kauri Trees Analysed with AISA Hyperspectral Data

The endemic New Zealand kauri trees (Agathis australis) are under threat by the deadly kauri dieback disease (Phytophthora agathidicida (PA)). This study aimed to identify spectral index combinations for characterising visible stress symptoms in the kauri canopy. The analysis is based on an aerial AISA hyperspectral image mosaic and 1258 reference crowns in three study sites in the Waitakere Ranges west of Auckland. A field-based assessment scheme for canopy stress symptoms (classes 1–5) was further optimised for use with RGB aerial images. A combination of four indices with six bands in the spectral range 450–1205 nm resulted in a correlation of 0.93 (mean absolute error 0.27, RMSE 0.48) for all crown sizes. Comparable results were achieved with five indices in the 450–970 nm region. A Random Forest (RF) regression gave the most accurate predictions while a M5P regression tree performed nearly as well and a linear regression resulted in slightly lower correlations. Normalised Difference Vegetation Indices (NDVI) in the near-infrared / red spectral range were the most important index combinations, followed by indices with bands in the near-infrared spectral range from 800 to 1205 nm. A test on different crown sizes revealed that stress symptoms in smaller crowns with denser foliage are best described in combination with pigment-sensitive indices that include bands in the green and blue spectral range. A stratified approach with individual models for pre-segmented low and high forest stands improved the overall performance. The regression models were also tested in a pixel-based analysis. A manual interpretation of the resulting raster map with stress symptom patterns observed in aerial imagery indicated a good match. With bandwidths of 10 nm and a maximum number of six bands, the selected index combinations can be used for large-area monitoring on an airborne multispectral sensor. This study establishes the base for a cost-efficient, objective monitoring method for stress symptoms in kauri canopies, suitable to cover large forest areas with an airborne multispectral sensor.

Remote Sensing-Based Research for Monitoring Progress towards SDG 15 in Bangladesh: A Review

The Sustainable Development Goals (SDGs) have been in effect since 2015 to continue the progress of the Millennium Development Goals. Some of the SDGs are expected to be achieved by 2020, while others by 2030. Among the 17 SDGs, SDG 15 is particularly dedicated to environmental resources (e.g., forest, wetland, land). These resources are gravely threatened by human-induced climate change and intense anthropogenic activities. In Bangladesh, one of the most climate-vulnerable countries, climate change and human interventions are taking a heavy toll on environmental resources. Ensuring the sustainability of these resources requires regular monitoring and evaluation to identify challenges, concerns, and progress of environmental management. Remote sensing has been used as an effective tool to monitor and evaluate these resources. As such, many studies on Bangladesh used various remote-sensing approaches to conduct research on the issues related to SDG 15, particularly on forest, wetland, erosion, and landslides. However, we lack a comprehensive view of the progress, challenges, concerns, and future outlook of the goal and its targets. In this study, we sought to systematically review the remote-sensing studies related to SDG 15 (targets 15.1–15.3) to present developments, analyze trends and limitations, and provide future directions to ensure sustainability. We developed several search keywords and finally selected 53 articles for review. We discussed the topical and methodological trends of current remote-sensing works. In addition, limitations were identified and future research directions were provided.

Linking Remote Sensing and Geodiversity and Their Traits Relevant to Biodiversity—Part I: Soil Characteristics

In the face of rapid global change it is imperative to preserve geodiversity for the overall conservation of biodiversity. Geodiversity is important for understanding complex biogeochemical and physical processes and is directly and indirectly linked to biodiversity on all scales of ecosystem organization. Despite the great importance of geodiversity, there is a lack of suitable monitoring methods. Compared to conventional in-situ techniques, remote sensing (RS) techniques provide a pathway towards cost-effective, increasingly more available, comprehensive, and repeatable, as well as standardized monitoring of continuous geodiversity on the local to global scale. This paper gives an overview of the state-of-the-art approaches for monitoring soil characteristics and soil moisture with unmanned aerial vehicles (UAV) and air- and spaceborne remote sensing techniques. Initially, the definitions for geodiversity along with its five essential characteristics are provided, with an explanation for the latter. Then, the approaches of spectral traits (ST) and spectral trait variations (STV) to record geodiversity using RS are defined. LiDAR (light detection and ranging), thermal and microwave sensors, multispectral, and hyperspectral RS technologies to monitor soil characteristics and soil moisture are also presented. Furthermore, the paper discusses current and future satellite-borne sensors and missions as well as existing data products. Due to the prospects and limitations of the characteristics of different RS sensors, only specific geotraits and geodiversity characteristics can be recorded. The paper provides an overview of those geotraits.

The effects of habitat loss and fragmentation on plant functional traits and functional diversity: what do we know so far?

Habitat loss and fragmentation result in significant landscape changes that ultimately affect plant diversity and add uncertainty to how natural areas will respond to future global change. This uncertainty is important given that the loss of biodiversity often includes losing key ecosystem functions. Few studies have explored the effects of landscape changes on plant functional diversity and evidence so far has shown far more pervasive effects than previously reported by species richness and composition studies. Here we present a review on the impact of habitat loss and fragmentation on (1) individual functional traits-related to persistence, dispersal and establishment-and (2) functional diversity. We also discuss current knowledge gaps and propose ways forward. From the literature review we found that studies have largely focused on dispersal traits, strongly impacted by habitat loss and fragmentation, while traits related to persistence were the least studied. Furthermore, most studies did not distinguish habitat loss from spatial fragmentation and were conducted at the plot or fragment-level, which taken together limits the ability to generalize the scale-dependency of landscape changes on plant functional diversity. For future work, we recommend (1) clearly distinguishing the effects of habitat loss from those of fragmentation, and (2) recognizing the scale-dependency of predicted responses when functional diversity varies in time and space. We conclude that a clear understanding of the effects of habitat loss and fragmentation on functional diversity will improve predictions of the resiliency and resistance of plant communities to varying scales of disturbance.

The Use of UAV Mounted Sensors for Precise Detection of Bark Beetle Infestation

The bark beetle (Ips typographus) disturbance represents serious environmental and economic issue and presents a major challenge for forest management. A timely detection of bark beetle infestation is therefore necessary to reduce losses. Besides wood production, a bark beetle outbreak affects the forest ecosystem in many other ways including the water cycle, nutrient cycle, or carbon fixation. On that account, (not just) European temperate coniferous forests may become endangered ecosystems. Our study was performed in the unmanaged zone of the Krkonoše Mountains National Park in the northern part of the Czech Republic where the natural spreading of bark beetle is slow and, therefore, allow us to continuously monitor the infested trees that are, in contrast to managed forests, not being removed. The aim of this work is to evaluate possibilities of unmanned aerial vehicle (UAV)-mounted low-cost RGB and modified near-infrared sensors for detection of different stages of infested trees at the individual level, using a retrospective time series for recognition of still green but already infested trees (so-called green attack). A mosaic was created from the UAV imagery, radiometrically calibrated for surface reflectance, and five vegetation indices were calculated; the reference data about the stage of bark beetle infestation was obtained through a combination of field survey and visual interpretation of an orthomosaic. The differences of vegetation indices between infested and healthy trees over four time points were statistically evaluated and classified using the Maximum Likelihood classifier. Achieved results confirm our assumptions that it is possible to use a low-cost UAV-based sensor for detection of various stages of bark beetle infestation across seasons; with increasing time after infection, distinguishing infested trees from healthy ones grows easier. The best performance was achieved by the Greenness Index with overall accuracy of 78%–96% across the time periods. The performance of the indices based on near-infrared band was lower.

Influence of 3D Spruce Tree Representation on Accuracy of Airborne and Satellite Forest Reflectance Simulated in DART

Advances in high-performance computer resources and exploitation of high-density terrestrial laser scanning (TLS) data allow for reconstruction of close-to-reality 3D forest scenes for use in canopy radiative transfer models. Consequently, our main objectives were (i) to reconstruct 3D representation of Norway spruce (Picea abies) trees by deriving distribution of woody and foliage elements from TLS and field structure data and (ii) to use the reconstructed 3D spruce representations for evaluation of the effects of canopy structure on forest reflectance simulated in the Discrete Anisotropic Radiative Transfer (DART) model. Data for this study were combined from two spruce research sites located in the mountainous areas of the Czech Republic. The canopy structure effects on simulated top-of-canopy reflectance were evaluated for four scenarios (10 × 10 m scenes with 10 trees), ranging from geometrically simple to highly detailed architectures. First scenario A used predefined simple tree crown shapes filled with a turbid medium with simplified trunks and branches. Other three scenarios used the reconstructed 3D spruce representations with B detailed needle shoots transformed into turbid medium, C with simplified shoots retained as facets, and D with detailed needle shoots retained as facets D. For the first time, we demonstrated the capability of the DART model to simulate reflectance of complex coniferous forest scenes up to the level of a single needle (scenario D). Simulated bidirectional reflectance factors extracted for each scenario were compared with actual airborne hyperspectral and space-borne Sentinel-2 MSI reflectance data. Scenario A yielded the largest differences from the remote sensing observations, mainly in the visible and NIR regions, whereas scenarios B, C, and D produced similar results revealing a good agreement with the remote sensing data. When judging the computational requirements for reflectance simulations in DART, scenario B can be considered as most operational spruce forest representation, because the transformation of 3D shoots in turbid medium reduces considerably the simulation time and hardware requirements.

Acquisition of Forest Attributes for Decision Support at the Forest Enterprise Level Using Remote-Sensing Techniques—A Review

In recent decades, remote sensing techniques and the associated hardware and software have made substantial improvements. With satellite images that can obtain sub-meter spatial resolution, and new hardware, particularly unmanned aerial vehicles and systems, there are many emerging opportunities for improved data acquisition, including variable temporal and spectral resolutions. Combined with the evolution of techniques for aerial remote sensing, such as full wave laser scanners, hyperspectral scanners, and aerial radar sensors, the potential to incorporate this new data in forest management is enormous. Here we provide an overview of the current state-of-the-art remote sensing techniques for large forest areas thousands or tens of thousands of hectares. We examined modern remote sensing techniques used to obtain forest data that are directly applicable to decision making issues, and we provided a general overview of the types of data that can be obtained using remote sensing. The most easily accessible forest variable described in many works is stand or tree height, followed by other inventory variables like basal area, tree number, diameters, and volume, which are crucial in decision making process, especially for thinning and harvest planning, and timber transport optimization. Information about zonation and species composition are often described as more difficult to assess; however, this information usually is not required on annual basis. Counts of studies on forest health show an increasing trend in the last years, mostly in context of availability of new sensors as well as increased forest vulnerability caused by climate change; by virtue to modern sensors interesting methods were developed for detection of stressed or damaged trees. Unexpectedly few works focus on regeneration and seedlings evaluation; though regenerated stands should be regularly monitored in order to maintain forest cover sustainability.

Atmospheric depositions affect the growth patterns of Scots pines (Pinus sylvestris L.)-a long-term cause-effect monitoring study using biomarkers

Recording the causes, effects, and effect mechanisms of vegetation health is crucial to understand process-pattern interactions in ecosystem processes. NO_X and SO_X in the form of air pollution are both triggers and sources of vegetation health that can have an effect on the local or the global level and whose impacts need to be monitored. In this study, the growth patterns in Scots pines (Pinus sylvestris L.) were studied in the context of changing atmospheric depositions in the lowlands of north-eastern Germany. Under the influence of atmospheric sulfur (S) and nitrogen (N) depositions, pine stands showed temporal variations in their normal growth behavior. In such cases, the patterns of normal growth can be suppressed or accelerated. Pine stands which were influenced by high S deposition up until 1990 changed from suppressed growth to accelerated growth by decreasing S, but increasing N depositions between 1990 and 2003. The cause of these changes in pine growth patterns was imbalances in S and N nutrition, in particular, enrichments of sulfate, non-protein nitrogen or arginine, and finally, also imbalances and deficiencies in phosphorus, glucose, and adenosine triphosphate in the needles. Our long-term monitoring study shows that biochemical markers (traits) are crucial bioindicators for the qualitative and quantitative assessment of tree vitality and growth patterns in Scots pines. Furthermore, we were able to show that NO_X and SO_X depositions need to be monitored locally to be able to assess the local effects of biomolecular markers on the growth patterns in Scots pine stands.

Towards global data products of Essential Biodiversity Variables on species traits

Essential Biodiversity Variables (EBVs) allow observation and reporting of global biodiversity change, but a detailed framework for the empirical derivation of specific EBVs has yet to be developed. Here, we re-examine and refine the previous candidate set of species traits EBVs and show how traits related to phenology, morphology, reproduction, physiology and movement can contribute to EBV operationalization. The selected EBVs express intra-specific trait variation and allow monitoring of how organisms respond to global change. We evaluate the societal relevance of species traits EBVs for policy targets and demonstrate how open, interoperable and machine-readable trait data enable the building of EBV data products. We outline collection methods, meta(data) standardization, reproducible workflows, semantic tools and licence requirements for producing species traits EBVs. An operationalization is critical for assessing progress towards biodiversity conservation and sustainable development goals and has wide implications for data-intensive science in ecology, biogeography, conservation and Earth observation.

Ten Years of Experience with Scientific TerraSAR-X Data Utilization

This paper presents the first comprehensive review on the scientific utilization of earth observation data provided by the German TerraSAR-X mission. It considers the different application fields and technical capabilities to identify the key applications and the preferred technical capabilities of this high-resolution SAR satellite system from a scientific point of view. The TerraSAR-X mission is conducted in a close cooperation with industry. Over the past decade, scientists have gained access to data through a proposal submission and evaluation process. For this review, we have considered 1636 data utilization proposals and analyzed 2850 publications. In general, TerraSAR-X data is used in a wide range of geoscientific research areas comprising anthroposphere, biosphere, cryosphere, geosphere, and hydrosphere. Methodological and technical research is a cross-cutting issue that supports all geoscientific fields. Most of the proposals address research questions concerning the geosphere, whereas the majority of the publications focused on research regarding “methods and techniques”. All geoscientific fields involve systematic observations for the establishment of time series in support of monitoring activities. High-resolution SAR data are mainly used for the determination and investigation of surface movements, where SAR interferometry in its different variants is the predominant technology. However, feature tracking techniques also benefit from the high spatial resolution. Researchers make use of polarimetric SAR capabilities, although they are not a key feature of the TerraSAR-X system. The StripMap mode with three meter spatial resolution is the preferred SAR imaging mode, accounting for 60 percent of all scientific data acquisitions. The Spotlight modes with the highest spatial resolution of less than one meter are requested by only approximately 30 percent of the newly acquired TerraSAR-X data.

Understanding Forest Health with Remote Sensing, Part III: Requirements for a Scalable Multi-Source Forest Health Monitoring Network Based on Data Science Approaches

Forest ecosystems fulfill a whole host of ecosystem functions that are essential for life on our planet. However, an unprecedented level of anthropogenic influences is reducing the resilience and stability of our forest ecosystems as well as their ecosystem functions. The relationships between drivers, stress, and ecosystem functions in forest ecosystems are complex, multi-faceted, and often non-linear, and yet forest managers, decision makers, and politicians need to be able to make rapid decisions that are data-driven and based on short and long-term monitoring information, complex modeling, and analysis approaches. A huge number of long-standing and standardized forest health inventory approaches already exist, and are increasingly integrating remote-sensing based monitoring approaches. Unfortunately, these approaches in monitoring, data storage, analysis, prognosis, and assessment still do not satisfy the future requirements of information and digital knowledge processing of the 21st century. Therefore, this paper discusses and presents in detail five sets of requirements, including their relevance, necessity, and the possible solutions that would be necessary for establishing a feasible multi-source forest health monitoring network for the 21st century. Namely, these requirements are: (1) understanding the effects of multiple stressors on forest health; (2) using remote sensing (RS) approaches to monitor forest health; (3) coupling different monitoring approaches; (4) using data science as a bridge between complex and multidimensional big forest health (FH) data; and (5) a future multi-source forest health monitoring network. It became apparent that no existing monitoring approach, technique, model, or platform is sufficient on its own to monitor, model, forecast, or assess forest health and its resilience. In order to advance the development of a multi-source forest health monitoring network, we argue that in order to gain a better understanding of forest health in our complex world, it would be conducive to implement the concepts of data science with the components: (i) digitalization; (ii) standardization with metadata management after the FAIR (Findability, Accessibility, Interoperability, and Reusability) principles; (iii) Semantic Web; (iv) proof, trust, and uncertainties; (v) tools for data science analysis; and (vi) easy tools for scientists, data managers, and stakeholders for decision-making support.

Identification of forest cutting in managed forest of Haldwani, India using ALOS-2/PALSAR-2 SAR data

Large-scale forest clear-cut identification is one of the major application of remote sensing techniques. ALOS-2/PALSAR-2 is the latest SAR satellite providing multi-polarized L-band SAR data. With increasing deforestation, it is important to assess the potential of SAR data for identifying clear-cuts in forest regions. In this research work, multi-temporal ALOS-2/PALSAR-2 SAR data and supplementary Landsat-8 optical data sets are acquired over Indian tropical forest, and SAR parameters are analysed over a progressively clear-cut Teak plantation. Sensitivity of the SAR parameters to progressive clear-cuts is estimated and found that the cross-polarized backscatter σ_HV⁰ and entropy parameter H are most sensitive to both partial and complete clear-cut in forest compartments. An entropy thresholding based classification is carried out to identify clear-cut regions with a good accuracy. The study highlights the utility of SAR parameters to monitor forest clear-cuts for better forest management.