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Prakash S, Kumar A. Influencing intertidal food web: Implications of ocean acidification on the physiological energetics of key species the 'wedge' clam Donax faba. Mar Pollut Bull 2024; 202:116366. [PMID: 38621355 DOI: 10.1016/j.marpolbul.2024.116366] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2024] [Revised: 04/03/2024] [Accepted: 04/08/2024] [Indexed: 04/17/2024]
Abstract
Ocean acidification has become increasingly severe in coastal areas. It poses emerging threats to coastal organisms and influences ecological functioning. Donax faba, a dominant clam in the intertidal zone of the Bay of Bengal, plays an important role in the coastal food web. This clam has been widely consumed by the local communities and also acts as a staple diet for shorebirds and crustaceans. In this paper, we investigated how acidified conditions will influence the physiology, biochemical constituents, and energetics of Donax faba. Upon incubation for 2 months in lowered pH 7.7 ± 0.05 and control 8.1 ± 0.05 conditions, we found a delayed growth in the acidified conditions followed by decrease in calcium ions in the clam shell. Although not significant, we found the digestive enzymes showed a downward trend. Total antioxidant was significantly increased in the acidified condition compared to the control. Though not significant, the expression level of MDA and antioxidant enzymes (SOD, CAT, GST, GPX, and APX) showed increasing trend in acidified samples. Among nutrients such as amino acids and fatty acids, there was no significant difference between treatments, however, showed a downward trend in the acidified conditions compared to control. Among the minerals, iron and zinc showed significant increase in the acidified conditions. The above results suggest that the clam growth, and physiological energetics may have deleterious effects if exposed for longer durations at lowered pH condition thereby affecting the organisms involved in the coastal food web.
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Affiliation(s)
- S Prakash
- Centre for Climate Change Studies, Sathyabama Institute of Science and Technology, Rajiv Gandhi Salai, Chennai 600119, Tamil Nadu, India; Sathyabama Marine Research Station, Sallimalai Street, Rameswaram 623526, Tamil Nadu India.
| | - Amit Kumar
- Centre for Climate Change Studies, Sathyabama Institute of Science and Technology, Rajiv Gandhi Salai, Chennai 600119, Tamil Nadu, India; Sathyabama Marine Research Station, Sallimalai Street, Rameswaram 623526, Tamil Nadu India.
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2
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Trevisan R, Mello DF. Redox control of antioxidants, metabolism, immunity, and development at the core of stress adaptation of the oyster Crassostrea gigas to the dynamic intertidal environment. Free Radic Biol Med 2024; 210:85-106. [PMID: 37952585 DOI: 10.1016/j.freeradbiomed.2023.11.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/23/2023] [Revised: 10/30/2023] [Accepted: 11/07/2023] [Indexed: 11/14/2023]
Abstract
This review uses the marine bivalve Crassostrea gigas to highlight redox reactions and control systems in species living in dynamic intertidal environments. Intertidal species face daily and seasonal environmental variability, including temperature, oxygen, salinity, and nutritional changes. Increasing anthropogenic pressure can bring pollutants and pathogens as additional stressors. Surprisingly, C. gigas demonstrates impressive adaptability to most of these challenges. We explore how ROS production, antioxidant protection, redox signaling, and metabolic adjustments can shed light on how redox biology supports oyster survival in harsh conditions. The review provides (i) a brief summary of shared redox sensing processes in metazoan; (ii) an overview of unique characteristics of the C. gigas intertidal habitat and the suitability of this species as a model organism; (iii) insights into the redox biology of C. gigas, including ROS sources, signaling pathways, ROS-scavenging systems, and thiol-containing proteins; and examples of (iv) hot topics that are underdeveloped in bivalve research linking redox biology with immunometabolism, physioxia, and development. Given its plasticity to environmental changes, C. gigas is a valuable model for studying the role of redox biology in the adaptation to harsh habitats, potentially providing novel insights for basic and applied studies in marine and comparative biochemistry and physiology.
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Affiliation(s)
- Rafael Trevisan
- Univ Brest, Ifremer, CNRS, IRD, UMR 6539, LEMAR, Plouzané, 29280, France
| | - Danielle F Mello
- Univ Brest, Ifremer, CNRS, IRD, UMR 6539, LEMAR, Plouzané, 29280, France.
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3
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Kumar PV, Rasal KD, Acharya A, Dey D, Sonwane AA, Reang D, Rajeshkannan R, Pawar SS, Kurade NP, Bhendarkar MP, Krishnani KK, Nagpure NS, Brahmane MP. Muscle Transcriptome Sequencing Revealed Thermal Stress-Responsive Regulatory Genes in Farmed Rohu, Labeo rohita (Hamilton, 1822). Mar Biotechnol (NY) 2023; 25:1057-1075. [PMID: 37878212 DOI: 10.1007/s10126-023-10259-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Accepted: 10/09/2023] [Indexed: 10/26/2023]
Abstract
Rohu, Labeo rohita, is one of the most important aquaculture species in the Indian subcontinent. Understanding the molecular-level physiological responses to thermal stress or climate change is essential. In the present work, transcriptome sequencing was carried out in the muscle tissue of the rohu in response to heat stress (35 °C) in comparison with the control (28 °C). A total of 125 Gb of sequence data was generated, and the raw-reads were filtered and trimmed, which resulted in 484 million quality reads. Reference-based assembly of reads was performed using L. rohita genome, and a total of 90.17% of reads were successfully mapped. A total of 37,462 contigs were assembled with an N50 value of 1854. The differential expression analysis revealed a total of 107 differentially expressed genes (DEGs) (15 up-, 37 down-, and 55 neutrally regulated) as compared to the control group (Log2FC > 2, P < 0.05). Gene enrichment analysis of DEGs indicates that transcripts were associated with molecular, biological, and cellular activities. The randomly selected differentially expressed transcripts were validated by RT-qPCR and found consistent expression patterns in line with the RNA-seq data. Several transcripts such as SERPINE1(HSP47), HSP70, HSP90alpha, Rano class II histocompatibility A beta, PGC-1 and ERR-induced regulator, proto-oncogene c-Fos, myozenin2, alpha-crystallin B chain-like protein, angiopoietin-like protein 8, and acetyl-CoA carboxylases have been identified in muscle tissue of rohu that are associated with stress/immunity. This study identified the key biomarker SERPINE1 (HSP47), which showed significant upregulation (~ 2- to threefold) in muscle tissue of rohu exposed to high temperature. This study can pave a path for the identification of stress-responsive biomarkers linked with thermal adaptations in the farmed carps.
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Affiliation(s)
- Pokanti Vinay Kumar
- ICAR - Central Institute of Fisheries Education, Mumbai, Maharashtra, 400061, India
| | - Kiran D Rasal
- ICAR - Central Institute of Fisheries Education, Mumbai, Maharashtra, 400061, India
| | - Arpit Acharya
- ICAR - Central Institute of Fisheries Education, Mumbai, Maharashtra, 400061, India
| | - Diganta Dey
- ICAR - Central Institute of Fisheries Education, Mumbai, Maharashtra, 400061, India
| | - Arvind A Sonwane
- ICAR - Central Institute of Fisheries Education, Mumbai, Maharashtra, 400061, India
| | - Dhalongsaih Reang
- ICAR - Central Institute of Fisheries Education, Mumbai, Maharashtra, 400061, India
| | - R Rajeshkannan
- ICAR - Central Institute of Fisheries Education, Mumbai, Maharashtra, 400061, India
| | - Sachin S Pawar
- School of Atmospheric Stress Management, ICAR - National Institute of Abiotic Stress Management, Baramati, Pune, Maharashtra, 413115, India
| | - Nitin P Kurade
- School of Atmospheric Stress Management, ICAR - National Institute of Abiotic Stress Management, Baramati, Pune, Maharashtra, 413115, India
| | - Mukesh P Bhendarkar
- School of Atmospheric Stress Management, ICAR - National Institute of Abiotic Stress Management, Baramati, Pune, Maharashtra, 413115, India
| | - Kishore K Krishnani
- ICAR - Central Institute of Fisheries Education, Mumbai, Maharashtra, 400061, India
- School of Atmospheric Stress Management, ICAR - National Institute of Abiotic Stress Management, Baramati, Pune, Maharashtra, 413115, India
| | - Naresh S Nagpure
- ICAR - Central Institute of Fisheries Education, Mumbai, Maharashtra, 400061, India
| | - Manoj P Brahmane
- ICAR - Central Institute of Fisheries Education, Mumbai, Maharashtra, 400061, India.
- School of Atmospheric Stress Management, ICAR - National Institute of Abiotic Stress Management, Baramati, Pune, Maharashtra, 413115, India.
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4
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Schwaner C, Farhat S, Boutet I, Tanguy A, Barbosa M, Grouzdev D, Pales Espinosa E, Allam B. Combination of RNAseq and RADseq to Identify Physiological and Adaptive Responses to Acidification in the Eastern Oyster (Crassostrea virginica). Mar Biotechnol (NY) 2023; 25:997-1019. [PMID: 37864760 DOI: 10.1007/s10126-023-10255-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Accepted: 09/29/2023] [Indexed: 10/23/2023]
Abstract
Ocean acidification (OA) is a major stressor threatening marine calcifiers, including the eastern oyster (Crassostrea virginica). In this paper, we provide insight into the molecular mechanisms associated with resilience to OA, with the dual intentions of probing both acclimation and adaptation potential in this species. C. virginica were spawned, and larvae were reared in control or acidified conditions immediately after fertilization. RNA samples were collected from larvae and juveniles, and DNA samples were collected from juveniles after undergoing OA-induced mortality and used to contrast gene expression (RNAseq) and SNP (ddRADseq) profiles from animals reared under both conditions. Results showed convergence of evidence from both approaches, particularly in genes involved in biomineralization that displayed significant changes in variant frequencies and gene expression levels among juveniles that survived acidification as compared to controls. Downregulated genes were related to immune processes, supporting previous studies demonstrating a reduction in immunity from exposure to OA. Acclimation to OA via regulation of gene expression might confer short-term resilience to immediate threats; however, the costs may not be sustainable, underscoring the importance of selection of resilient genotypes. Here, we identified SNPs associated with survival under OA conditions, suggesting that this commercially and ecologically important species might have the genetic variation needed for adaptation to future acidification. The identification of genetic features associated with OA resilience is a highly-needed step for the development of marker-assisted selection of oyster stocks for aquaculture and restoration activities.
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Affiliation(s)
- Caroline Schwaner
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY, 11790, USA
| | - Sarah Farhat
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY, 11790, USA
- Institut Systématique Evolution Biodiversité (ISYEB), Muséum national d'Histoire naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, Paris, France
| | - Isabelle Boutet
- Station Biologique de Roscoff, CNRS/Sorbonne Université, Place Georges Teissier 29680, Roscoff, France
| | - Arnaud Tanguy
- Station Biologique de Roscoff, CNRS/Sorbonne Université, Place Georges Teissier 29680, Roscoff, France
| | - Michelle Barbosa
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY, 11790, USA
| | - Denis Grouzdev
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY, 11790, USA
| | | | - Bassem Allam
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY, 11790, USA.
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5
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Madaloz TZ, Dos Santos K, Zacchi FL, Bainy ACD, Razzera G. Nuclear receptor superfamily structural diversity in pacific oyster: In silico identification of estradiol binding candidates. Chemosphere 2023; 340:139877. [PMID: 37619748 DOI: 10.1016/j.chemosphere.2023.139877] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Revised: 07/21/2023] [Accepted: 08/17/2023] [Indexed: 08/26/2023]
Abstract
The increasing presence of anthropogenic contaminants in aquatic environments poses challenges for species inhabiting contaminated sites. Due to their structural binding characteristics to ligands that inhibit or activate gene transcription, these xenobiotic compounds frequently target the nuclear receptor superfamily. The present work aims to understand the potential interaction between the hormone 17-β-estradiol, an environmental contaminant, and the nuclear receptors of Crassostrea gigas, the Pacific oyster. This filter-feeding, sessile oyster species is subject to environmental changes and exposure to contaminants. In the Pacific oyster, the estrogen-binding nuclear receptor is not able to bind this hormone as it does in vertebrates. However, another receptor may exhibit responsiveness to estrogen-like molecules and derivatives. We employed high-performance in silico methodologies, including three-dimensional modeling, molecular docking and atomistic molecular dynamics to identify likely binding candidates with the target moecule. Our approach revealed that among the C. gigas nuclear receptor superfamily, candidates with the most favorable interaction with the molecule of interest belonged to the NR1D, NR1H, NR1P, NR2E, NHR42, and NR0B groups. Interestingly, NR1H and NR0B were associated with planktonic/larval life cycle stages, while NR1P, NR2E, and NR0B were associated with sessile/adult life stages. The application of this computational methodological strategy demonstrated high performance in the virtual screening of candidates for binding with the target xenobiotic molecule and can be employed in other studies in the field of ecotoxicology in non-model organisms.
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Affiliation(s)
- Tâmela Zamboni Madaloz
- Programa de Pós-Graduação Em Bioquímica, Departamento de Bioquímica, Universidade Federal de Santa Catarina, Florianópolis, SC, 88040-900, Brazil; Laboratório de Biomarcadores de Contaminação Aquática e Imunoquímica, Universidade Federal de Santa Catarina, Florianópolis, SC, 88040-900, Brazil
| | - Karin Dos Santos
- Programa de Pós-Graduação Em Bioquímica, Departamento de Bioquímica, Universidade Federal de Santa Catarina, Florianópolis, SC, 88040-900, Brazil; Laboratório de Biomarcadores de Contaminação Aquática e Imunoquímica, Universidade Federal de Santa Catarina, Florianópolis, SC, 88040-900, Brazil
| | - Flávia Lucena Zacchi
- Laboratório de Moluscos Marinhos, Universidade Federal de Santa Catarina, Florianópolis, SC, 88061-600, Brazil
| | - Afonso Celso Dias Bainy
- Programa de Pós-Graduação Em Bioquímica, Departamento de Bioquímica, Universidade Federal de Santa Catarina, Florianópolis, SC, 88040-900, Brazil; Laboratório de Biomarcadores de Contaminação Aquática e Imunoquímica, Universidade Federal de Santa Catarina, Florianópolis, SC, 88040-900, Brazil
| | - Guilherme Razzera
- Programa de Pós-Graduação Em Bioquímica, Departamento de Bioquímica, Universidade Federal de Santa Catarina, Florianópolis, SC, 88040-900, Brazil; Laboratório de Biomarcadores de Contaminação Aquática e Imunoquímica, Universidade Federal de Santa Catarina, Florianópolis, SC, 88040-900, Brazil.
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6
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Martins Medeiros IP, Souza MM. Acid times in physiology: A systematic review of the effects of ocean acidification on calcifying invertebrates. Environ Res 2023; 231:116019. [PMID: 37119846 DOI: 10.1016/j.envres.2023.116019] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2023] [Revised: 04/26/2023] [Accepted: 04/27/2023] [Indexed: 05/12/2023]
Abstract
The reduction in seawater pH from rising levels of carbon dioxide (CO2) in the oceans has been recognized as an important force shaping the future of marine ecosystems. Therefore, numerous studies have reported the effects of ocean acidification (OA) in different compartments of important animal groups, based on field and/or laboratory observations. Calcifying invertebrates have received considerable attention in recent years. In the present systematic review, we have summarized the physiological responses to OA in coral, echinoderm, mollusk, and crustacean species exposed to predicted ocean acidification conditions in the near future. The Scopus, Web of Science, and PubMed databases were used for the literature search, and 75 articles were obtained based on the inclusion criteria. Six main physiological responses have been reported after exposure to low pH. Growth (21.6%), metabolism (20.8%), and acid-base balance (17.6%) were the most frequent among the phyla, while calcification and growth were the physiological responses most affected by OA (>40%). Studies show that the reduction of pH in the aquatic environment, in general, supports the maintenance of metabolic parameters in invertebrates, with redistribution of energy to biological functions, generating limitations to calcification, which can have severe consequences for the health and survival of these organisms. It should be noted that the OA results are variable, with inter and/or intraspecific differences. In summary, this systematic review offers important scientific evidence for establishing paradigms in the physiology of climate change in addition to gathering valuable information on the subject and future research perspectives.
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Affiliation(s)
- Isadora Porto Martins Medeiros
- Programa de Pós-Graduação em Ciências Fisiológicas, Universidade Federal do Rio Grande - FURG, Rio Grande, Rio Grande do Sul, Brazil.
| | - Marta Marques Souza
- Programa de Pós-Graduação em Ciências Fisiológicas, Universidade Federal do Rio Grande - FURG, Rio Grande, Rio Grande do Sul, Brazil; Instituto de Ciências Biológicas, Universidade Federal do Rio Grande - FURG, Rio Grande, Rio Grande do Sul, Brazil
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7
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Schwaner C, Farhat S, Barbosa M, Boutet I, Tanguy A, Pales Espinosa E, Allam B. Molecular Features Associated with Resilience to Ocean Acidification in the Northern Quahog, Mercenaria mercenaria. Mar Biotechnol (NY) 2023; 25:83-99. [PMID: 36417051 DOI: 10.1007/s10126-022-10183-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Accepted: 11/08/2022] [Indexed: 06/16/2023]
Abstract
The increasing concentration of CO2 in the atmosphere and resulting flux into the oceans will further exacerbate acidification already threatening coastal marine ecosystems. The subsequent alterations in carbonate chemistry can have deleterious impacts on many economically and ecologically important species including the northern quahog (Mercenaria mercenaria). The accelerated pace of these changes requires an understanding of how or if species and populations will be able to acclimate or adapt to such swift environmental alterations. Thus far, studies have primarily focused on the physiological effects of ocean acidification (OA) on M. mercenaria, including reductions in growth and survival. However, the molecular mechanisms of resilience to OA in this species remains unclear. Clam gametes were fertilized under normal pCO2 and reared under acidified (pH ~ 7.5, pCO2 ~ 1200 ppm) or control (pH ~ 7.9, pCO2 ~ 600 ppm) conditions before sampled at 2 days (larvae), 32 days (postsets), 5 and 10 months (juveniles) and submitted to RNA and DNA sequencing to evaluate alterations in gene expression and genetic variations. Results showed significant shift in gene expression profiles among clams reared in acidified conditions as compared to their respective controls. At 10 months of exposure, significant shifts in allele frequency of single nucleotide polymorphisms (SNPs) were identified. Both approaches highlighted genes coding for proteins related to shell formation, bicarbonate transport, cytoskeleton, immunity/stress, and metabolism, illustrating the role these pathways play in resilience to OA.
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Affiliation(s)
- Caroline Schwaner
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY, 11790, USA
| | - Sarah Farhat
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY, 11790, USA
| | - Michelle Barbosa
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY, 11790, USA
| | - Isabelle Boutet
- Station Biologique de Roscoff, CNRS/Sorbonne Université, Place Georges Teissier, 29680, Roscoff, France
| | - Arnaud Tanguy
- Station Biologique de Roscoff, CNRS/Sorbonne Université, Place Georges Teissier, 29680, Roscoff, France
| | | | - Bassem Allam
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY, 11790, USA.
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8
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Schwaner C, Farhat S, Haley J, Pales Espinosa E, Allam B. Proteomic and Transcriptomic Responses Enable Clams to Correct the pH of Calcifying Fluids and Sustain Biomineralization in Acidified Environments. Int J Mol Sci 2022; 23. [PMID: 36555707 DOI: 10.3390/ijms232416066] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Revised: 12/09/2022] [Accepted: 12/14/2022] [Indexed: 12/23/2022] Open
Abstract
Seawater pH and carbonate saturation are predicted to decrease dramatically by the end of the century. This process, designated ocean acidification (OA), threatens economically and ecologically important marine calcifiers, including the northern quahog (Mercenaria mercenaria). While many studies have demonstrated the adverse impacts of OA on bivalves, much less is known about mechanisms of resilience and adaptive strategies. Here, we examined clam responses to OA by evaluating cellular (hemocyte activities) and molecular (high-throughput proteomics, RNASeq) changes in hemolymph and extrapallial fluid (EPF-the site of biomineralization located between the mantle and the shell) in M. mercenaria continuously exposed to acidified (pH ~7.3; pCO2 ~2700 ppm) and normal conditions (pH ~8.1; pCO2 ~600 ppm) for one year. The extracellular pH of EPF and hemolymph (~7.5) was significantly higher than that of the external acidified seawater (~7.3). Under OA conditions, granulocytes (a sub-population of hemocytes important for biomineralization) were able to increase intracellular pH (by 54% in EPF and 79% in hemolymph) and calcium content (by 56% in hemolymph). The increased pH of EPF and hemolymph from clams exposed to high pCO2 was associated with the overexpression of genes (at both the mRNA and protein levels) related to biomineralization, acid-base balance, and calcium homeostasis, suggesting that clams can use corrective mechanisms to mitigate the negative impact of OA.
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Bebianno MJ, Mendes VM, O'Donovan S, Carteny CC, Keiter S, Manadas B. Effects of microplastics alone and with adsorbed benzo(a)pyrene on the gills proteome of Scrobicularia plana. Sci Total Environ 2022; 842:156895. [PMID: 35753444 DOI: 10.1016/j.scitotenv.2022.156895] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 06/18/2022] [Accepted: 06/19/2022] [Indexed: 06/15/2023]
Abstract
Microplastics (MPs) are globally present in the marine environment, but the biological effects on marine organisms at the molecular and cellular levels remain scarce. Due to their lipophilic nature, MPs can adsorb other contaminants present in the marine environment, which may increase their detrimental effects once ingested by organisms. This study investigates the effects of low-density polyethylene (PE) MPs with and without adsorbed benzo[a]pyrene (BaP) in the gills proteome of the peppery furrow shell clam, Scrobicularia plana. Clams were exposed to PE MPs (11-13 μm; 1 mg L-1) for 14 days. BaP was analyzed in whole clams' soft tissues, and a proteomic approach was applied in the gills using SWATH/DIA analysis. Proteomic responses suggest that virgin MPs cause disturbance by altering cytoskeleton and cell structure, energy metabolism, conformational changes, oxidative stress, fatty acids, DNA binding and, neurotransmission highlighting the potential risk of this type of MPs for the clam health. Conversely, when clam gills were exposed to MPs adsorbed with BaP a higher differentiation of protein expression was observed that besides changes in cytoskeleton and cell structure, oxidative stress, energy metabolism and DNA binding also induce changes in glucose metabolism, RNA binding and apoptosis. These results indicate that the presence of both stressors (MPs and BaP) have a higher toxicological risk to the health of S. plana.
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Affiliation(s)
- M J Bebianno
- Centre for Marine and Environmental Research (CIMA), University of Algarve, Campus de Gambelas, 8000-397 Faro, Portugal.
| | - Vera M Mendes
- CNC - Center for Neuroscience and Cell Biology, University of Coimbra, Coimbra, Portugal
| | - Sarit O'Donovan
- Centre for Marine and Environmental Research (CIMA), University of Algarve, Campus de Gambelas, 8000-397 Faro, Portugal
| | - Camila C Carteny
- Systemic Physiological and Ecotoxicological Research, Department of Biology, University of Antwerp, Antwerp, Belgium
| | - Stephen Keiter
- Man-Technology-Environment Research Centre (MTM), School of Science and Technology, Örebro University, Örebro, Sweden
| | - Bruno Manadas
- CNC - Center for Neuroscience and Cell Biology, University of Coimbra, Coimbra, Portugal
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10
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Kapsenberg L, Bitter MC, Miglioli A, Aparicio-Estalella C, Pelejero C, Gattuso JP, Dumollard R. Molecular basis of ocean acidification sensitivity and adaptation in Mytilus galloprovincialis. iScience 2022; 25:104677. [PMID: 35847553 PMCID: PMC9283884 DOI: 10.1016/j.isci.2022.104677] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Revised: 01/18/2022] [Accepted: 06/23/2022] [Indexed: 12/04/2022] Open
Abstract
Predicting the potential for species adaption to climate change is challenged by the need to identify the physiological mechanisms that underpin species vulnerability. Here, we investigated the sensitivity to ocean acidification in marine mussels during early development, and specifically the trochophore stage. Using RNA and DNA sequencing and in situ RNA hybridization, we identified developmental processes associated with abnormal development and rapid adaptation to low pH. Trochophores exposed to low pH seawater exhibited 43 differentially expressed genes. Gene annotation and in situ hybridization of differentially expressed genes point to pH sensitivity of (1) shell field development and (2) cellular stress response. Five genes within these two processes exhibited shifts in allele frequencies indicative of a potential for rapid adaptation. This case study contributes direct evidence that protecting species’ existing genetic diversity is a critical management action to facilitate species resilience to climate change. Marine mussel larval development and genetic adaptation in low pH seawater RNA and DNA responses reveal impacts on shell field development and cell stress Five genes exhibited both physiological sensitivity and long-term adaptive potential Conserving standing genetic variation could bolster resilience to global change
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Affiliation(s)
- Lydia Kapsenberg
- Department of Marine Biology and Oceanography, Institute of Marine Sciences (CSIC), Barcelona, Spain.,Sorbonne Université, CNRS, Laboratoire d'Océanographie de Villefranche (LOV), Institut de la Mer à Villefranche (IMEV), 181 chemin du Lazaret, 06230 Villefranche-sur-mer, France
| | - Mark C Bitter
- Department of Biology, Stanford University, Stanford, CA, USA.,Department of Ecology and Evolution, University of Chicago, Chicago, IL, USA
| | - Angelica Miglioli
- Sorbonne Université/CNRS, Institut de la Mer, UMR7009 Laboratoire de Biologie du Développement, Chemin du Lazaret, 06230 Villefranche-sur-Mer, France.,Università degli studi di Genova, Dipartimento di Scienze della Terra, dell'Ambiente e della Vita (DISTAV), Corso Europa 26, 16132 Genova, Italy
| | - Clàudia Aparicio-Estalella
- Department of Marine Biology and Oceanography, Institute of Marine Sciences (CSIC), Barcelona, Spain.,Lighthouse Field Station, School of Biological Sciences, University of Aberdeen, Aberdeen, UK
| | - Carles Pelejero
- Department of Marine Biology and Oceanography, Institute of Marine Sciences (CSIC), Barcelona, Spain.,Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain
| | - Jean-Pierre Gattuso
- Sorbonne Université, CNRS, Laboratoire d'Océanographie de Villefranche (LOV), Institut de la Mer à Villefranche (IMEV), 181 chemin du Lazaret, 06230 Villefranche-sur-mer, France.,Institute for Sustainable Development and International Relations, Sciences Po, 27 rue Saint Guillaume, 75007 Paris, France
| | - Rémi Dumollard
- Sorbonne Université/CNRS, Institut de la Mer, UMR7009 Laboratoire de Biologie du Développement, Chemin du Lazaret, 06230 Villefranche-sur-Mer, France
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11
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Gurr SJ, Trigg SA, Vadopalas B, Roberts SB, Putnam HM. Acclimatory gene expression of primed clams enhances robustness to elevated pCO 2. Mol Ecol 2022; 31:5005-5023. [PMID: 35947503 DOI: 10.1111/mec.16644] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2022] [Revised: 08/02/2022] [Accepted: 08/02/2022] [Indexed: 11/30/2022]
Abstract
Sub-lethal exposure to environmental challenges may enhance ability to cope with chronic or repeated change, a process known as priming. In a previous study, pre-exposure to seawater enriched with pCO2 improved growth and reduced antioxidant capacity of juvenile Pacific geoduck Panopea generosa, suggesting that transcriptional shifts may drive phenotypic modifications post-priming. To this end, juvenile clams were sampled and TagSeq gene expression data analyzed after 1) a 110-day acclimation under ambient (921 μatm, naïve) and moderately-elevated pCO2 (2870 μatm, pre-exposed); then following 2) a second 7-day exposure to three pCO2 treatments (ambient: 754 μatm; moderately-elevated: 2750 μatm; severely-elevated: 4940 μatm), a 7-day return to ambient pCO2 , and a third 7-day exposure to two pCO2 treatments (ambient: 967 μatm; moderately-elevated: 3030 μatm). Pre-exposed geoducks frontloaded genes for stress and apoptosis/innate immune response, homeostatic processes, protein degradation, and transcriptional modifiers. Pre-exposed geoducks were also responsive to subsequent encounters, with gene sets enriched for mitochondrial recycling and immune defense under elevated pCO2 and energy metabolism and biosynthesis under ambient recovery. In contrast, gene sets with higher expression in naïve clams were enriched for fatty-acid degradation and glutathione components, suggesting naïve clams could be depleting endogenous fuels, with unsustainable energetic requirements if changes in carbonate chemistry persist. Collectively, our transcriptomic data indicates pCO2 priming during post-larval periods could, via gene expression regulation, enhance robustness in bivalves to environmental change. Such priming approaches may be beneficial for aquaculture, as seafood demand intensifies concurrent with increasing climate change in marine systems.
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Affiliation(s)
- Samuel J Gurr
- Department of Biological Sciences, University of Rhode Island, Kingston, RI, USA
| | - Shelly A Trigg
- University of Washington, School of Aquatic and Fishery Sciences, Seattle, WA, USA
| | | | - Steven B Roberts
- University of Washington, School of Aquatic and Fishery Sciences, Seattle, WA, USA
| | - Hollie M Putnam
- Department of Biological Sciences, University of Rhode Island, Kingston, RI, USA
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12
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Venkataraman YR, White SJ, Roberts SB. Differential DNA methylation in Pacific oyster reproductive tissue in response to ocean acidification. BMC Genomics 2022; 23:556. [PMID: 35927609 PMCID: PMC9351233 DOI: 10.1186/s12864-022-08781-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Accepted: 07/13/2022] [Indexed: 12/30/2022] Open
Abstract
Background There is a need to investigate mechanisms of phenotypic plasticity in marine invertebrates as negative effects of climate change, like ocean acidification, are experienced by coastal ecosystems. Environmentally-induced changes to the methylome may regulate gene expression, but methylome responses can be species- and tissue-specific. Tissue-specificity has implications for gonad tissue, as gonad-specific methylation patterns may be inherited by offspring. We used the Pacific oyster (Crassostrea gigas) — a model for understanding pH impacts on bivalve molecular physiology due to its genomic resources and importance in global aquaculture— to assess how low pH could impact the gonad methylome. Oysters were exposed to either low pH (7.31 ± 0.02) or ambient pH (7.82 ± 0.02) conditions for 7 weeks. Whole genome bisulfite sequencing was used to identify methylated regions in female oyster gonad samples. C- > T single nucleotide polymorphisms were identified and removed to ensure accurate methylation characterization. Results Analysis of gonad methylomes revealed a total of 1284 differentially methylated loci (DML) found primarily in genes, with several genes containing multiple DML. Gene ontologies for genes containing DML were involved in development and stress response, suggesting methylation may promote gonad growth homeostasis in low pH conditions. Additionally, several of these genes were associated with cytoskeletal structure regulation, metabolism, and protein ubiquitination — commonly-observed responses to ocean acidification. Comparison of these DML with other Crassostrea spp. exposed to ocean acidification demonstrates that similar pathways, but not identical genes, are impacted by methylation. Conclusions Our work suggests DNA methylation may have a regulatory role in gonad and larval development, which would shape adult and offspring responses to low pH stress. Combined with existing molluscan methylome research, our work further supports the need for tissue- and species-specific studies to understand the potential regulatory role of DNA methylation. Supplementary Information The online version contains supplementary material available at 10.1186/s12864-022-08781-5.
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Affiliation(s)
- Yaamini R Venkataraman
- Biology Department, Woods Hole Oceanographic Institution, 266 Woods Hole Road, Woods Hole, MA, 02543, USA. .,School of Aquatic & Fishery Sciences, University of Washington, 1122 NE Boat St, Seattle, WA, USA.
| | - Samuel J White
- School of Aquatic & Fishery Sciences, University of Washington, 1122 NE Boat St, Seattle, WA, USA
| | - Steven B Roberts
- School of Aquatic & Fishery Sciences, University of Washington, 1122 NE Boat St, Seattle, WA, USA
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13
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Kumar A, Nonnis S, Castellano I, AbdElgawad H, Beemster GTS, Buia MC, Maffioli E, Tedeschi G, Palumbo A. Molecular response of Sargassum vulgare to acidification at volcanic CO 2 vents: Insights from proteomic and metabolite analyses. Mol Ecol 2022; 31:3844-3858. [PMID: 35635253 DOI: 10.1111/mec.16553] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Revised: 05/16/2022] [Accepted: 05/20/2022] [Indexed: 11/30/2022]
Abstract
Ocean acidification is impacting marine life all over the world. Understanding how species can cope with the changes in seawater carbonate chemistry represents a challenging issue. We addressed this topic using underwater CO2 vents that naturally acidify some marine areas off the island of Ischia. In the most acidified area of the vents, having a mean pH value of 6.7, comparable to far-future predicted acidification scenarios (by 2300), the biomass is dominated by the brown alga Sargassum vulgare. The novelty of the present study is the characterization of the S. vulgare proteome together with metabolite analyses to identify the key proteins, metabolites, and pathways affected by ocean acidification. A total of 367 and 387 proteins were identified in populations grown at pH that approximates the current global average (8.1) and acidified sites, respectively. Analysis of their relative abundance revealed that 304 proteins are present in samples from both sites: 111 proteins are either higher or exclusively present under acidified conditions, whereas 120 proteins are either lower or present only under control conditions. Functionally, under acidification, a decrease in proteins related to translation and post-translational processes and an increase of proteins involved in photosynthesis, glycolysis, oxidation-reduction processes, and protein folding were observed. In addition, small-molecule metabolism was affected, leading to a decrease of some fatty acids and antioxidant compounds under acidification. Overall, the results obtained by proteins and metabolites analyses, integrated with previous transcriptomic, physiological, and biochemical studies, allowed us to delineate the molecular strategies adopted by S. vulgare to grow in future acidified environments, including an increase of proteins involved in energetic metabolism, oxidation-reduction processes, and protein folding at the expense of proteins involved in translation and post-translational processes.
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Affiliation(s)
- Amit Kumar
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Marine Research Center, Naples, Italy
- Centre for Climate Change Studies, Sathyabama Institute of Science and Technology, Chennai, India
| | - Simona Nonnis
- Department of Veterinary Medicine and Animal Science (DIVAS), Università degli Studi di Milano, Milan, Italy
- CRC "Innovation for well-being and environment" (I-WE), Università degli Studi di Milano, Milan, Italy
| | - Immacolata Castellano
- Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, Naples, Italy
- Stazione Zoologica Anton Dohrn, Department of Biology and Evolution of Marine Organisms, Naples, Italy
| | - Hamada AbdElgawad
- Department of Botany, Faculty of Science, Beni-Suef University, Beni-Suef, Egypt
- Integrated Molecular Plant Physiology Research Group (IMPRES), Department of Biology, University of Antwerp, Antwerp, Belgium
| | - Gerrit T S Beemster
- Integrated Molecular Plant Physiology Research Group (IMPRES), Department of Biology, University of Antwerp, Antwerp, Belgium
| | - Maria Cristina Buia
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Marine Research Center, Naples, Italy
| | - Elisa Maffioli
- Department of Veterinary Medicine and Animal Science (DIVAS), Università degli Studi di Milano, Milan, Italy
| | - Gabriella Tedeschi
- Department of Veterinary Medicine and Animal Science (DIVAS), Università degli Studi di Milano, Milan, Italy
- CRC "Innovation for well-being and environment" (I-WE), Università degli Studi di Milano, Milan, Italy
| | - Anna Palumbo
- Stazione Zoologica Anton Dohrn, Department of Biology and Evolution of Marine Organisms, Naples, Italy
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14
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Bednaršek N, Beck MW, Pelletier G, Applebaum SL, Feely RA, Butler R, Byrne M, Peabody B, Davis J, Štrus J. Natural Analogues in pH Variability and Predictability across the Coastal Pacific Estuaries: Extrapolation of the Increased Oyster Dissolution under Increased pH Amplitude and Low Predictability Related to Ocean Acidification. Environ Sci Technol 2022; 56:9015-9028. [PMID: 35548856 PMCID: PMC9228044 DOI: 10.1021/acs.est.2c00010] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Coastal-estuarine habitats are rapidly changing due to global climate change, with impacts influenced by the variability of carbonate chemistry conditions. However, our understanding of the responses of ecologically and economically important calcifiers to pH variability and temporal variation is limited, particularly with respect to shell-building processes. We investigated the mechanisms driving biomineralogical and physiological responses in juveniles of introduced (Pacific; Crassostrea gigas) and native (Olympia; Ostrea lurida) oysters under flow-through experimental conditions over a six-week period that simulate current and future conditions: static control and low pH (8.0 and 7.7); low pH with fluctuating (24-h) amplitude (7.7 ± 0.2 and 7.7 ± 0.5); and high-frequency (12-h) fluctuating (8.0 ± 0.2) treatment. The oysters showed physiological tolerance in vital processes, including calcification, respiration, clearance, and survival. However, shell dissolution significantly increased with larger amplitudes of pH variability compared to static pH conditions, attributable to the longer cumulative exposure to lower pH conditions, with the dissolution threshold of pH 7.7 with 0.2 amplitude. Moreover, the high-frequency treatment triggered significantly greater dissolution, likely because of the oyster's inability to respond to the unpredictable frequency of variations. The experimental findings were extrapolated to provide context for conditions existing in several Pacific coastal estuaries, with time series analyses demonstrating unique signatures of pH predictability and variability in these habitats, indicating potentially benefiting effects on fitness in these habitats. These implications are crucial for evaluating the suitability of coastal habitats for aquaculture, adaptation, and carbon dioxide removal strategies.
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Affiliation(s)
- Nina Bednaršek
- Southern
California Coastal Water Research Project, Costa Mesa, California 92626, United States
- National
Institute of Biology, Marine Biological Station, 6330 Piran, Slovenia
| | - Marcus W. Beck
- Tampa
Bay Estuary Program, St. Petersburg, Florida 33701, United States
| | - Greg Pelletier
- Southern
California Coastal Water Research Project, Costa Mesa, California 92626, United States
| | - Scott Lee Applebaum
- Environmental
Studies Program, University of Southern
California, Los Angeles, California 90089, United States
| | - Richard A. Feely
- NOAA
Pacific Marine Environmental Laboratory, Seattle, Washington 98115, United States
| | - Robert Butler
- Southern
California Coastal Water Research Project, Costa Mesa, California 92626, United States
| | - Maria Byrne
- School of
Life and Environmental Sciences, University
of Sydney, Sydney 2006, New South Wales, Australia
| | - Betsy Peabody
- Puget
Sound Restoration Fund, Bainbridge
Island, Washington 98110, United States
| | - Jonathan Davis
- Pacific
Hybreed, Inc., Port Orchard, Washington 98366, United States
| | - Jasna Štrus
- Biotechnical
Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia
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15
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Akcha F, Coquillé N, Sussarellu R, Rouxel J, Chouvelon T, Gonzalez P, Legeay A, Bruzac S, Sireau T, Gonzalez JL, Gourves PY, Godfrin Y, Buchet V, Stachowski-Haberkorn S. Trophic transfer of copper decreases the condition index in Crassostrea gigas spat in concomitance with a change in the microalgal fatty acid profile and enhanced oyster energy demand. Sci Total Environ 2022; 824:153841. [PMID: 35181356 DOI: 10.1016/j.scitotenv.2022.153841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Revised: 01/26/2022] [Accepted: 02/09/2022] [Indexed: 06/14/2023]
Abstract
Due to new usages and sources, copper (Cu) concentrations are increasing in the Arcachon Basin, an important shellfish production area in France. In the present paper, the trophic transfer of Cu was studied between a microalga, Tetraselmis suecica, and Crassostrea gigas (Pacific oyster) spat. An experimental approach was developed to assess Cu exposure, transfer and toxicity on both phytoplankton and spat. Exposure of microalgal cultures to Cu for 7-8 days (3.1 ± 0.1, 15.7 ± 0.2 and 50.4 ± 1.0 μg Cu·L-1 for the control, Cu15 and Cu50 conditions, respectively) led to concentrations in microalgae (28.3 ± 0.9 and 110.7 ± 11.9 mg Cu·kg dry weight-1 for Cu15 and Cu50, respectively) close to those measured in the field. Despite Cu accumulation, the physiology of the microalgae remained poorly affected. Exposed cultures could only be discriminated from controls by a higher relative content in intracellular reactive oxygen species, and a lower relative content in lipids together with a reduced metabolic activity. By contrast, the fatty acid profile of microalgae was modified, with a particularly relevant lower content of the essential polyunsaturated fatty acid 22:6n-3 (docosahexaenoic acid [DHA]). Following 21 days of spat feeding with Cu15 and Cu50 microalgal cultures, trophic transfer of Cu was observed with a high initial Cu concentration in spat tissues. No effect was observed on oxidative stress endpoints. Cu exposure was responsible for a decrease in the spat condition index, an outcome that could be related to an insufficient DHA supply and extra energy demand as suggested by the overexpression of genes involved in energy metabolism, ATP synthesis and glycogen catabolism.
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Affiliation(s)
- F Akcha
- Ifremer, Laboratory of Ecotoxicology, 44311 Nantes cedex 03, France.
| | - N Coquillé
- Ifremer, Laboratory of Ecotoxicology, 44311 Nantes cedex 03, France
| | - R Sussarellu
- Ifremer, Laboratory of Ecotoxicology, 44311 Nantes cedex 03, France
| | - J Rouxel
- Ifremer, Laboratory of Ecotoxicology, 44311 Nantes cedex 03, France
| | - T Chouvelon
- Ifremer, Laboratory of Biogeochemistry of Metallic Contaminants, 44311 Nantes cedex 03, France
| | - P Gonzalez
- University of Bordeaux, CNRS, EPOC, UMR 5805, Aquatic Ecotoxicology, Arcachon, France
| | - A Legeay
- University of Bordeaux, CNRS, EPOC, UMR 5805, Aquatic Ecotoxicology, Arcachon, France
| | - S Bruzac
- Ifremer, Laboratory of Biogeochemistry of Metallic Contaminants, 44311 Nantes cedex 03, France
| | - T Sireau
- Ifremer, Laboratory of Biogeochemistry of Metallic Contaminants, 44311 Nantes cedex 03, France
| | - J-L Gonzalez
- Ifremer, Laboratory of Biogeochemistry of Metallic Contaminants, 44311 Nantes cedex 03, France
| | - P-Y Gourves
- University of Bordeaux, CNRS, EPOC, UMR 5805, Aquatic Ecotoxicology, Arcachon, France
| | - Y Godfrin
- Ifremer, Laboratory of Ecotoxicology, 44311 Nantes cedex 03, France
| | - V Buchet
- Ifremer, Experimental Facilities for Marine Mollusks, 85230 Bouin, France
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16
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Salamanca-Díaz DA, Ritschard EA, Schmidbaur H, Wanninger A. Comparative Single-Cell Transcriptomics Reveals Novel Genes Involved in Bivalve Embryonic Shell Formation and Questions Ontogenetic Homology of Molluscan Shell Types. Front Cell Dev Biol 2022; 10:883755. [PMID: 35813198 PMCID: PMC9261976 DOI: 10.3389/fcell.2022.883755] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Accepted: 05/19/2022] [Indexed: 12/29/2022] Open
Abstract
Mollusks are known for their highly diverse repertoire of body plans that often includes external armor in form of mineralized hardparts. Representatives of the Conchifera, one of the two major lineages that comprises taxa which originated from a uni-shelled ancestor (Monoplacophora, Gastropoda, Cephalopoda, Scaphopoda, Bivalvia), are particularly relevant regarding the evolution of mollusk shells. Previous studies have found that the shell matrix of the adult shell (teleoconch) is rapidly evolving and that the gene set involved in shell formation is highly taxon-specific. However, detailed annotation of genes expressed in tissues involved in the formation of the embryonic shell (protoconch I) or the larval shell (protoconch II) are currently lacking. Here, we analyzed the genetic toolbox involved in embryonic and larval shell formation in the quagga mussel Dreissena rostriformis using single cell RNA sequencing. We found significant differences in genes expressed during embryonic and larval shell secretion, calling into question ontogenetic homology of these transitory bivalve shell types. Further ortholog comparisons throughout Metazoa indicates that a common genetic biomineralization toolbox, that was secondarily co-opted into molluscan shell formation, was already present in the last common metazoan ancestor. Genes included are engrailed, carbonic anhydrase, and tyrosinase homologs. However, we found that 25% of the genes expressed in the embryonic shell field of D. rostriformis lack an ortholog match with any other metazoan. This indicates that not only adult but also embryonic mollusk shells may be fast-evolving structures. We raise the question as to what degree, and on which taxonomic level, the gene complement involved in conchiferan protoconch formation may be lineage-specific or conserved across taxa.
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Affiliation(s)
- David A. Salamanca-Díaz
- Unit for Integrative Zoology, Department of Evolutionary Biology, University of Vienna, Vienna, Austria
| | - Elena A. Ritschard
- Division of Molecular Evolution and Development, Department of Neuroscience and Developmental Biology, University of Vienna, Vienna, Austria
| | - Hannah Schmidbaur
- Division of Molecular Evolution and Development, Department of Neuroscience and Developmental Biology, University of Vienna, Vienna, Austria
| | - Andreas Wanninger
- Unit for Integrative Zoology, Department of Evolutionary Biology, University of Vienna, Vienna, Austria
- *Correspondence: Andreas Wanninger,
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17
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Lutier M, Di Poi C, Gazeau F, Appolis A, Le Luyer J, Pernet F. Revisiting tolerance to ocean acidification: Insights from a new framework combining physiological and molecular tipping points of Pacific oyster. Glob Chang Biol 2022; 28:3333-3348. [PMID: 35092108 DOI: 10.1111/gcb.16101] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 12/02/2021] [Accepted: 01/06/2022] [Indexed: 06/14/2023]
Abstract
Studies on the impact of ocean acidification on marine organisms involve exposing organisms to future acidification scenarios, which has limited relevance for coastal calcifiers living in a mosaic of habitats. Identification of tipping points beyond which detrimental effects are observed is a widely generalizable proxy of acidification susceptibility at the population level. This approach is limited to a handful of studies that focus on only a few macro-physiological traits, thus overlooking the whole organism response. Here we develop a framework to analyze the broad macro-physiological and molecular responses over a wide pH range in juvenile oyster. We identify low tipping points for physiological traits at pH 7.3-6.9 that coincide with a major reshuffling in membrane lipids and transcriptome. In contrast, a drop in pH affects shell parameters above tipping points, likely impacting animal fitness. These findings were made possible by the development of an innovative methodology to synthesize and identify the main patterns of variations in large -omic data sets, fitting them to pH and identifying molecular tipping points. We propose the broad application of our framework to the assessment of effects of global change on other organisms.
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Affiliation(s)
| | - Carole Di Poi
- Univ Brest, Ifremer, CNRS, IRD, LEMAR, Plouzané, France
| | - Frédéric Gazeau
- Laboratoire d'Océanographie de Villefranche, LOV Sorbonne Université, CNRS, Villefranche-sur-Mer, France
| | | | - Jérémy Le Luyer
- EIO UPF/IRD/ILM/Ifremer, Labex CORAIL, Unité RMPF, Centre Océanologique du Pacifique, Vairao, French Polynesia
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18
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Nigro L, Freitas R, Maggioni D, Hamza H, Coppola F, Protano G, Della Torre C. Coating with polysaccharides influences the surface charge of cerium oxide nanoparticles and their effects to Mytilus galloprovincialis. NanoImpact 2021; 24:100362. [PMID: 35559821 DOI: 10.1016/j.impact.2021.100362] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2021] [Revised: 09/28/2021] [Accepted: 10/25/2021] [Indexed: 06/15/2023]
Abstract
This study focused on the effects of surface coating, acquired through the interaction with natural biomolecules, on the behavior and ecotoxicity of nanoparticles (NPs). To this aim, the effects of Cerium Oxide Nanoparticles (CeO2NPs) naked and coated with chitosan and alginate on the marine mussel Mytilus galloprovincialis were compared. Mussels were exposed for 7 days to 100 μg L-1 of CeO2NPs and for 28 days to 1 μg L-1 of CeO2NPs. In both experiments CeO2NPs were used naked and coated with the two polysaccharides. The lowest tested concentration allowed to understand the environmental relevance of this biological process. A set of biomarkers related to oxidative stress/damage and energy metabolism was applied to assess the ecotoxicity of CeO2NPs. The aggregation and stability in water of CeO2NPs were measured through dynamic light scattering analysis and the levels of Ce in the exposure media and in mussels soft tissues were determined by inductively coupled plasma-mass spectrometry. Results showed a different hydrodynamic behavior and stability of CeO2NPs in saltwater related to the different coatings. Despite this, no differences in the bioaccumulation of CeO2NPs were observed among the experimental groups. Different coatings affected also CeO2NPs toxicological outcomes in both 7- and 28-days exposures. Coating with chitosan enhanced antioxidant enzyme activities while coating with alginate triggered oxidative damage. Although the oxidant pathways did not differ that much among the exposures, biomarkers of energetic supplies suggested a different strategy of defense in response to CeO2NP exposure at a lower concentration and for a longer period of time. The obtained results are in line with findings of a previous study on freshwater mussels, suggesting that the coating with biomolecules, which impart negative charge to the NPs, might enhance their biological effects. This study highlighted that interactions of NPs with natural biomolecules largely present in the aquatic environment could affect NPs toxicity altering the interaction towards organisms.
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Affiliation(s)
- Lara Nigro
- Department of Biosciences, University of Study of Milan, Italy; Department of Biology & CESAM, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Rosa Freitas
- Department of Biology & CESAM, University of Aveiro, 3810-193 Aveiro, Portugal
| | | | - Hady Hamza
- Department of Chemistry, University of Study of Milan, Italy
| | - Francesca Coppola
- Department of Biology & CESAM, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Giuseppe Protano
- Department of Physical, Earth and Environmental Sciences, University of Study of Siena, Italy
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19
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Carroll SL, Coyne VE. A proteomic analysis of the effect of ocean acidification on the haemocyte proteome of the South African abalone Haliotis midae. Fish Shellfish Immunol 2021; 117:274-290. [PMID: 34411749 DOI: 10.1016/j.fsi.2021.08.008] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Revised: 08/02/2021] [Accepted: 08/10/2021] [Indexed: 06/13/2023]
Abstract
As a result of increasing CO2 emissions and the prevalence of global climate change, ocean acidification (OA) is becoming more pervasive, affecting many trophic levels, particularly those that rely on succinctly balanced ocean chemistry. This ultimately threatens community structures, as well as the future sustainability of the fishing/aquaculture industry. Understanding the molecular stress response of key organisms will aid in predicting their future survivability under changing environmental conditions. This study sought to elucidate the molecular stress response of the South African abalone, Haliotis midae, an understudied organism with high economic value, utilising a high throughput iTRAQ-based proteomics methodology. Adult abalone were exposed to control (pH 7.9) and experimental (pH 7.5) conditions for 12, 72 and 168 h, following which protein was isolated from sampled haemocytes and subsequently processed. iTRAQ-labelled peptides were analysed using mass spectrometry, while an array of bioinformatics tools was utilised for analysing the proteomic data. COG analysis identified "Cytoskeleton", "Translation, ribosomal structure and biogenesis", "Post-translational modification, protein turnover, chaperones", and "Intracellular trafficking, secretion and vesicular transport" to be the most enriched functional classes, while statistical analysis identified a total of 33 up-regulated and 23 down-regulated effectors of OA stress in abalone. Several of the up-regulated proteins that were identified function in central metabolism (ENO1, PGK, DUOX1, GPD2), the stress/immune response (CAMKI, HSPA5/GRP78, MAPKI), and cytoskeleton, protein sorting and signal transduction (IQGAP1, MYO9B, TLN1, RDX, TCP-1/CCT, SNX6, CHMP1a, VPS13a). Protein-protein interactions were predicted using STRING DB, Cytoscape and Ingenuity Pathway Analysis, providing a model of the effects of OA on the H. midae haemocyte proteome. The data indicated that H. midae underwent a metabolic shift under OA conditions to utilize more energy-efficient mechanisms of ATP generation, while attempts at restoring haemocyte stabilisation and homeostasis were reflected by up-regulation of oxidative stress and cytoskeletal proteins. Our results support other molluscan studies that report a complex array of overlapping functions of both the stress and immune response systems. This interplay of the mounted stress and immune response is maintained and observed through the up-regulation of proteins involved in protein synthesis and turnover, as well as intracellular signalling and transport. The data presented in this study highlight the value of employing sensitive and robust -omics technologies for assessing the effects of changing environmental conditions on marine organisms.
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Affiliation(s)
- Sarah L Carroll
- Department of Molecular and Cell Biology, University of Cape Town, Rondebosch, 7700, South Africa
| | - Vernon E Coyne
- Department of Molecular and Cell Biology, University of Cape Town, Rondebosch, 7700, South Africa.
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20
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Tisthammer KH, Timmins-Schiffman E, Seneca FO, Nunn BL, Richmond RH. Physiological and molecular responses of lobe coral indicate nearshore adaptations to anthropogenic stressors. Sci Rep 2021; 11:3423. [PMID: 33564085 DOI: 10.1038/s41598-021-82569-7] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Accepted: 01/18/2021] [Indexed: 01/08/2023] Open
Abstract
Corals in nearshore marine environments are increasingly exposed to reduced water quality, which is the primary local threat to Hawaiian coral reefs. It is unclear if corals surviving in such conditions have adapted to withstand sedimentation, pollutants, and other environmental stressors. Lobe coral populations from Maunalua Bay, Hawaii showed clear genetic differentiation between the 'polluted, high-stress' nearshore site and the 'less polluted, lower-stress' offshore site. To understand the driving force of the observed genetic partitioning, reciprocal transplant and common-garden experiments were conducted to assess phenotypic differences between these two populations. Physiological responses differed significantly between the populations, revealing more stress-resilient traits in the nearshore corals. Changes in protein profiles highlighted the inherent differences in the cellular metabolic processes and activities between the two; nearshore corals did not significantly alter their proteome between the sites, while offshore corals responded to nearshore transplantation with increased abundances of proteins associated with detoxification, antioxidant defense, and regulation of cellular metabolic processes. The response differences across multiple phenotypes between the populations suggest local adaptation of nearshore corals to reduced water quality. Our results provide insight into coral’s adaptive potential and its underlying processes, and reveal potential protein biomarkers that could be used to predict resiliency.
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Lim YK, Cheung K, Dang X, Roberts SB, Wang X, Thiyagarajan V. DNA methylation changes in response to ocean acidification at the time of larval metamorphosis in the edible oyster, Crassostrea hongkongensis. Mar Environ Res 2021; 163:105217. [PMID: 33276167 DOI: 10.1016/j.marenvres.2020.105217] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2020] [Revised: 05/07/2020] [Accepted: 05/10/2020] [Indexed: 06/12/2023]
Abstract
Unprecedented rate of increased CO2 level in the ocean and the subsequent changes in carbonate system including decreased pH, known as ocean acidification (OA), is predicted to disrupt not only the calcification process but also several other physiological and developmental processes in a variety of marine organisms, including edible oysters. Nonetheless, not all species are vulnerable to those OA threats, e.g. some species may be able to cope with OA stress using environmentally induced modifications on gene and protein expressions. For example, external environmental stressors including OA can influence the addition and removal of methyl groups through epigenetic modification (e.g. DNA methylation) process to turn gene expression "on or off" as part of a rapid adaptive mechanism to cope with OA. In this study, we tested the above hypothesis through testing the effect of OA, using decreased pH 7.4 as proxy, on DNA methylation pattern of an endemic and a commercially important estuary oyster species, Crassostrea hongkongensis at the time of larval habitat selection and metamorphosis. Larval growth rate did not differ between control pH 8.1 and treatment pH 7.4. The metamorphosis rate of the pediveliger larvae was higher at pH 7.4 than those in control pH 8.1, however over one-third of the larvae raised at pH 7.4 failed to attach on optimal substrate as defined by biofilm presence. During larval development, a total of 130 genes were differentially methylated across the two treatments. The differential methylation in the larval genes may have partially accounted for the higher metamorphosis success rate under decreased pH 7.4 but with poor substratum selection ability. Differentially methylated loci were concentrated in the exon regions and appear to be associated with cytoskeletal and signal transduction, oxidative stress, metabolic processes, and larval metamorphosis, which implies the high potential of C. hongkongensis larvae to acclimate and adapt through non-genetic ways to OA threats within a single generation.
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Affiliation(s)
- Yong-Kian Lim
- The Swire Institute of Marine Science and School of Biological Sciences, University of Hong Kong, Pokfulam, Hong Kong Special Administrative Region, China
| | - Khan Cheung
- The Swire Institute of Marine Science and School of Biological Sciences, University of Hong Kong, Pokfulam, Hong Kong Special Administrative Region, China
| | - Xin Dang
- The Swire Institute of Marine Science and School of Biological Sciences, University of Hong Kong, Pokfulam, Hong Kong Special Administrative Region, China
| | - Steven B Roberts
- School of Aquatic and Fishery Sciences, University of Washington, 1122, NE Boat Street, Seattle, WA, USA
| | - Xiaotong Wang
- School of Agriculture, Ludong University, Yantai, 264025, China
| | - Vengatesen Thiyagarajan
- The Swire Institute of Marine Science and School of Biological Sciences, University of Hong Kong, Pokfulam, Hong Kong Special Administrative Region, China.
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Lim YK, Cheung K, Dang X, Roberts SB, Wang X, Thiyagarajan V. DNA methylation changes in response to ocean acidification at the time of larval metamorphosis in the edible oyster, Crassostrea hongkongensis. Mar Environ Res 2021; 163:105214. [PMID: 33221553 DOI: 10.1016/j.marenvres.2020.105214] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Unprecedented rate of increased CO2 level in the ocean and the subsequent changes in carbonate system including decreased pH, known as ocean acidification (OA), is predicted to disrupt not only the calcification process but also several other physiological and developmental processes in a variety of marine organisms, including edible oysters. Nonetheless, not all species are vulnerable to those OA threats, e.g. some species may be able to cope with OA stress using environmentally induced modifications on gene and protein expressions. For example, external environmental stressors including OA can influence the addition and removal of methyl groups through epigenetic modification (e.g. DNA methylation) process to turn gene expression "on or off" as part of a rapid adaptive mechanism to cope with OA. In this study, we tested the above hypothesis through testing the effect of OA, using decreased pH 7.4 as proxy, on DNA methylation pattern of an endemic and a commercially important estuary oyster species, Crassostrea hongkongensis at the time of larval habitat selection and metamorphosis. Larval growth rate did not differ between control pH 8.1 and treatment pH 7.4. The metamorphosis rate of the pediveliger larvae was higher at pH 7.4 than those in control pH 8.1, however over one-third of the larvae raised at pH 7.4 failed to attach on optimal substrate as defined by biofilm presence. During larval development, a total of 130 genes were differentially methylated across the two treatments. The differential methylation in the larval genes may have partially accounted for the higher metamorphosis success rate under decreased pH 7.4 but with poor substratum selection ability. Differentially methylated loci were concentrated in the exon regions and appear to be associated with cytoskeletal and signal transduction, oxidative stress, metabolic processes, and larval metamorphosis, which implies the high potential of C. hongkongensis larvae to acclimate and adapt through non-genetic ways to OA threats within a single generation.
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Affiliation(s)
- Yong-Kian Lim
- The Swire Institute of Marine Science and School of Biological Sciences, University of Hong Kong, Pokfulam, Hong Kong Special Administrative Region of China
| | - Khan Cheung
- The Swire Institute of Marine Science and School of Biological Sciences, University of Hong Kong, Pokfulam, Hong Kong Special Administrative Region of China
| | - Xin Dang
- The Swire Institute of Marine Science and School of Biological Sciences, University of Hong Kong, Pokfulam, Hong Kong Special Administrative Region of China
| | - Steven B Roberts
- School of Aquatic and Fishery Sciences, University of Washington, 1122 NE Boat Street, Seattle, WA, USA
| | - Xiaotong Wang
- School of Agriculture, Ludong University, Yantai, 264025, China
| | - Vengatesen Thiyagarajan
- The Swire Institute of Marine Science and School of Biological Sciences, University of Hong Kong, Pokfulam, Hong Kong Special Administrative Region of China.
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23
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Ewere EE, Reichelt-Brushett A, Benkendorff K. The neonicotinoid insecticide imidacloprid, but not salinity, impacts the immune system of Sydney rock oyster, Saccostrea glomerata. Sci Total Environ 2020; 742:140538. [PMID: 32634691 DOI: 10.1016/j.scitotenv.2020.140538] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Revised: 06/12/2020] [Accepted: 06/24/2020] [Indexed: 06/11/2023]
Abstract
The broad utilisation of neonicotinoids, particularly imidacloprid (IMI), in agriculture has led to unplanned contamination of aquatic systems around the world. The sublethal effects of individual pesticides on the immune system of oysters, as well as their combined effects with other environmental stressors that fluctuate in estuarine environments, such as salinity, are yet to be investigated in ecotoxicology. We investigated the acute (4 d) toxicity of IMI in two salinity regimes on the immune parameters of Sydney rock oysters (SRO), including total hemocyte counts (THC), differential hemocyte counts (DHC), phagocytosis and hemocyte aggregation (HA), hemolymph protein expression and enzyme (catalase (CAT), glutathione S-transferase (GST) and acetylcholinesterase (AChE)) activities. Environmentally relevant concentrations of IMI were found to cause an increase in THC, induce GST activity, reduce HA, and inhibit AChE activity. However, DHC, CAT activity and phagocytosis were not significantly impacted at any test concentration at either salinity. IMI concentrations ≥0.01 mg/L significantly altered the expression of 28 proteins in the hemolymph of SRO, including an increase in the relative expression of extracellular superoxide dismutase, severin, ATP synthase subunit beta, as well as stress response proteins (heat shock proteins, serine/threonine-protein kinase DCLK3 and peroxiredoxin-1), and a decrease/absence of collagen alpha-4 (VI) and alpha-6 (VI) chain, metalloendopeptidase, L-ascorbate oxidase, transporter, CEP209_CC5 domain-containing protein and actin. This study indicates that the immune system of SRO can be impacted at environmentally relevant concentrations of IMI, but reduced salinity does not appear to influence the toxicity of this insecticide.
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Affiliation(s)
- Endurance E Ewere
- Marine Ecology Research Centre, School of Environment, Science and Engineering, Southern Cross University, PO Box 157, Lismore, NSW 2480, Australia; Department of Animal and Environmental Biology, Faculty of Life Sciences, University of Benin, Benin City, Nigeria
| | - Amanda Reichelt-Brushett
- Marine Ecology Research Centre, School of Environment, Science and Engineering, Southern Cross University, PO Box 157, Lismore, NSW 2480, Australia
| | - Kirsten Benkendorff
- Marine Ecology Research Centre, School of Environment, Science and Engineering, Southern Cross University, PO Box 157, Lismore, NSW 2480, Australia; National Marine Science Centre, Southern Cross University, Coffs Harbour, NSW 2450, Australia.
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24
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Cong Y, Yang H, Zhang P, Xie Y, Cao X, Zhang L. Transcriptome Analysis of the Nematode Caenorhabditis elegans in Acidic Stress Environments. Front Physiol 2020; 11:1107. [PMID: 33013473 PMCID: PMC7511720 DOI: 10.3389/fphys.2020.01107] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Accepted: 08/10/2020] [Indexed: 12/20/2022] Open
Abstract
Ocean acidification and acid rain, caused by modern industries' fossil fuel burning, lead to a decrease in the living environmental pH, which results in a series of negative effects on many organisms. However, the underlying mechanisms of animals' response to acidic pH stress are largely unknown. In this study, we used the nematode Caenorhabditis elegans as an animal model to explore the regulatory mechanisms of organisms' response to pH decline. Two major stress-responsive pathways were found through transcriptome analysis in acidic stress environments. First, when the pH dropped from 6.33 to 4.33, the worms responded to the pH stress by upregulation of the col, nas, and dpy genes, which are required for cuticle synthesis and structure integrity. Second, when the pH continued to decrease from 4.33, the metabolism of xenobiotics by cytochrome P450 pathway genes (cyp, gst, ugt, and ABC transporters) played a major role in protecting the nematodes from the toxic substances probably produced by the more acidic environment. At the same time, the slowing down of cuticle synthesis might be due to its insufficient protective ability. Moreover, the systematic regulation pattern we found in nematodes might also be applied to other invertebrate and vertebrate animals to survive in the changing pH environments. Thus, our data might lay the foundation to identify the master gene(s) responding and adapting to acidic pH stress in further studies, and might also provide new solutions to improve assessment and monitoring of ecological restoration outcomes, or generate novel genotypes via genome editing for restoring in challenging environments especially in the context of acidic stress through global climate change.
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Affiliation(s)
- Yanyi Cong
- CAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Hanwen Yang
- CAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
| | - Pengchi Zhang
- CAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Yusu Xie
- CAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
| | - Xuwen Cao
- CAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Liusuo Zhang
- CAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
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Abstract
In molluscs, the shell fabrication requires a large array of secreted macromolecules including proteins and polysaccharides. Some of them are occluded in the shell during mineralization process and constitute the shell repertoire. The protein moieties, also called shell proteomes or, more simply, 'shellomes', are nowadays analyzed via high-throughput approaches. These latter, applied so far on about thirty genera, have evidenced the huge diversity of shellomes from model to model. They also pinpoint the recurrent presence of functional domains of diverse natures. Shell proteins are not only involved in guiding the mineral deposition, but also in enzymatic and immunity-related functions, in signaling or in coping with many extracellular molecules such as saccharides. Many shell proteins exhibit low complexity domains, the function of which remains unclear. Shellomes appear as self-organizing systems that must be approached from the point of view of complex systems biology: at supramolecular level, they generate emergent properties, i.e., microstructures that cannot be simply explained by the sum of their parts. A conceptual scheme is developed here that reconciles the plasticity of the shellome, its evolvability and the constrained frame of microstructures. Other perspectives arising from the study of shellomes are briefly discussed, including the macroevolution of shell repertoires, their maturation and their transformation through time.
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Affiliation(s)
- Frédéric Marin
- UMR CNRS 6282 Biogéosciences, Université de Bourgogne - Franche-Comté, 6 Boulevard Gabriel, 21000 Dijon, France
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26
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Lee YH, Jeong CB, Wang M, Hagiwara A, Lee JS. Transgenerational acclimation to changes in ocean acidification in marine invertebrates. Mar Pollut Bull 2020; 153:111006. [PMID: 32275552 DOI: 10.1016/j.marpolbul.2020.111006] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Revised: 02/18/2020] [Accepted: 02/19/2020] [Indexed: 06/11/2023]
Abstract
The rapid pace of increasing oceanic acidity poses a major threat to the fitness of the marine ecosystem, as well as the buffering capacity of the oceans. Disruption in chemical equilibrium in the ocean leads to decreased carbonate ion precipitation, resulting in calcium carbonate saturation. If these trends continue, calcifying invertebrates will experience difficultly maintaining their calcium carbonate exoskeleton and shells. Because malfunction of exoskeleton formation by calcifiers in response to ocean acidification (OA) will have non-canonical biological cascading results in the marine ecosystem, many studies have investigated the direct and indirect consequences of OA on ecosystem- and physiology-related traits of marine invertebrates. Considering that evolutionary adaptation to OA depends on the duration of OA effects, long-term exposure to OA stress over multi-generations may result in adaptive mechanisms that increase the potential fitness of marine invertebrates in response to OA. Transgenerational studies have the potential to elucidate the roles of acclimation, carryover effects, and evolutionary adaptation within and over generations in response to OA. In particular, understanding mechanisms of transgenerational responses (e.g., antioxidant responses, metabolic changes, epigenetic reprogramming) to changes in OA will enhance our understanding of marine invertebrate in response to rapid climate change.
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Affiliation(s)
- Young Hwan Lee
- Department of Biological Science, College of Science, Sungkyunkwan University, Suwon 16419, South Korea
| | - Chang-Bum Jeong
- Department of Biological Science, College of Science, Sungkyunkwan University, Suwon 16419, South Korea; Department of Marine Science, College of Nature Science, Incheon National University, Incheon 22012, South Korea
| | - Minghua Wang
- State Key Laboratory of Marine Environmental Science/College of the Environment & Ecology, Xiamen University, Xiamen 36110, China; Fujian Provincial Key Laboratory for Coastal Ecology and Environmental Studies, Xiamen University, Xiamen 361102, China
| | - Atsushi Hagiwara
- Institute of Integrated Science and Technology, Nagasaki University, Nagasaki 852-8521, Japan; Organization for Marine Science and Technology, Nagasaki University, Nagasaki 852-8521, Japan
| | - Jae-Seong Lee
- Department of Biological Science, College of Science, Sungkyunkwan University, Suwon 16419, South Korea.
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27
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Alma L, Kram KE, Holtgrieve GW, Barbarino A, Fiamengo CJ, Padilla-Gamiño JL. Ocean acidification and warming effects on the physiology, skeletal properties, and microbiome of the purple-hinge rock scallop. Comp Biochem Physiol A Mol Integr Physiol 2020; 240:110579. [DOI: 10.1016/j.cbpa.2019.110579] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2019] [Revised: 09/05/2019] [Accepted: 09/11/2019] [Indexed: 12/13/2022]
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28
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Freitas R, Silvestro S, Coppola F, Costa S, Meucci V, Battaglia F, Intorre L, Soares AMVM, Pretti C, Faggio C. Toxic impacts induced by Sodium lauryl sulfate in Mytilus galloprovincialis. Comp Biochem Physiol A Mol Integr Physiol 2020; 242:110656. [PMID: 31927089 DOI: 10.1016/j.cbpa.2020.110656] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2019] [Revised: 01/08/2020] [Accepted: 01/08/2020] [Indexed: 12/17/2022]
Abstract
Pharmaceuticals and personal care products (PPCPs) are continuously dispersed into the environment, as a result of human and veterinary use, reaching aquatic coastal systems and inhabiting organisms. However, information regarding to toxic effects of these compounds towards marine invertebrates is still scarce, especially in what regards to metabolic capacity and oxidative status alterations induced in bivalves after chronic exposure. In the present study, the toxic impacts of Sodium lauryl sulfate (SLS), an anionic surfactant widely used as an emulsifying cleaning agent in household and cosmetics, were evaluated in the mussel Mytilus galloprovincialis, after exposure for 28 days to different concentrations (0.0; 0.5; 1.0; 2.0 and 4.0 mg/L). For this, effects on mussels respitation rate, metabolic capacity and oxidative status were evaluated. The obtained results indicate a significant decrease on mussel's respiration rate after exposure to different SLS concentrations, an alteration that was accompanied by a decrease of bioconcentration factor along the increasing exposure gradient, especially at the highest exposure concentration. Nonetheless, the amount of SLS accumulated in organisms originated alterations in mussel's metabolic performance, with higher metabolic capacity up to 2.0 mg/L followed by a decrease at the highest tested concentration (4.0 mg/L). Mussels exposed to SLS revealed limited antioxidant defense mecanhisms but cellular damage was only observed at the highest exposure concentration (4.0 mg/L). In fact, up to 2.0 mg/L of SLS limited toxic impacts were observed, namely in terms of oxidative stress and redox balance. However, since mussel's respiration rate was greatly affected by the presence of SLS, the present study may highlight the potential threat of SLS towards marine bivalves, limiting their filtration capacity and, thus, affecting their global physiological development (including growth and reproduction) and ultimely their biochemical performance (afecting their defense capacity towards stressful conditons).
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Affiliation(s)
- Rosa Freitas
- Departamento de Biologia & CESAM, Universidade de Aveiro, 3810-193 Aveiro, Portugal.
| | - Serena Silvestro
- Departamento de Biologia & CESAM, Universidade de Aveiro, 3810-193 Aveiro, Portugal; Department of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina, Italy
| | - Francesca Coppola
- Departamento de Biologia & CESAM, Universidade de Aveiro, 3810-193 Aveiro, Portugal
| | - Silvana Costa
- Departamento de Biologia & CESAM, Universidade de Aveiro, 3810-193 Aveiro, Portugal
| | | | | | - Luigi Intorre
- Dipartimento di Scienze Veterinarie, Università di Pisa, Italy
| | - Amadeu M V M Soares
- Departamento de Biologia & CESAM, Universidade de Aveiro, 3810-193 Aveiro, Portugal
| | - Carlo Pretti
- Dipartimento di Scienze Veterinarie, Università di Pisa, Italy; Consorzio per il Centro Interuniversitario di Biologia Marina ed Ecologia Applicata "G. Bacci" (CIBM), Livorno, Italy
| | - Caterina Faggio
- Department of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina, Italy
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Timmins‐Schiffman E, Guzmán JM, Elliott Thompson R, Vadopalas B, Eudeline B, Roberts SB. Dynamic response in the larval geoduck ( Panopea generosa) proteome to elevated pCO 2. Ecol Evol 2020; 10:185-197. [PMID: 31988722 PMCID: PMC6972802 DOI: 10.1002/ece3.5885] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2019] [Revised: 10/15/2019] [Accepted: 11/10/2019] [Indexed: 12/20/2022] Open
Abstract
Pacific geoducks (Panopea generosa) are clams found along the northeast Pacific coast where they are important components of coastal and estuarine ecosystems and a major aquaculture product. The Pacific coastline, however, is also experiencing rapidly changing ocean habitat, including significant reductions in pH. To better understand the physiological impact of ocean acidification on geoduck clams, we characterized for the first time the proteomic profile of this bivalve during larval development and compared it to that of larvae exposed to low pH conditions. Geoduck larvae were reared at pH 7.5 (ambient) or pH 7.1 in a commercial shellfish hatchery from day 6 to day 19 postfertilization and sampled at six time points for an in-depth proteomics analysis using high-resolution data-dependent analysis. Larvae reared at low pH were smaller than those reared at ambient pH, especially in the prodissoconch II phase of development, and displayed a delay in their competency for settlement. Proteomic profiles revealed that metabolic, cell cycle, and protein turnover pathways differed between the two pH and suggested that differing phenotypic outcomes between pH 7.5 and 7.1 are likely due to environmental disruptions to the timing of physiological events. In summary, ocean acidification results in elevated energetic demand on geoduck larvae, resulting in delayed development and disruptions to normal molecular developmental pathways, such as carbohydrate metabolism, cell growth, and protein synthesis.
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Affiliation(s)
| | - José M. Guzmán
- School of Aquatic and Fishery SciencesUniversity of WashingtonSeattleWAUSA
| | - Rhonda Elliott Thompson
- School of Aquatic and Fishery SciencesUniversity of WashingtonSeattleWAUSA
- Taylor Shellfish HatcheryQuilceneWAUSA
- Mason County Public HealthSheltonWAUSA
| | | | | | - Steven B. Roberts
- School of Aquatic and Fishery SciencesUniversity of WashingtonSeattleWAUSA
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30
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Carney Almroth B, Bresolin de Souza K, Jönsson E, Sturve J. Oxidative stress and biomarker responses in the Atlantic halibut after long term exposure to elevated CO2 and a range of temperatures. Comp Biochem Physiol B Biochem Mol Biol 2019; 238:110321. [DOI: 10.1016/j.cbpb.2019.110321] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Revised: 07/08/2019] [Accepted: 08/22/2019] [Indexed: 10/26/2022]
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31
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Ewere EE, Reichelt-Brushett A, Benkendorff K. Imidacloprid and formulated product impacts the fatty acids and enzymatic activities in tissues of Sydney rock oysters, Saccostrea glomerata. Mar Environ Res 2019; 151:104765. [PMID: 31353171 DOI: 10.1016/j.marenvres.2019.104765] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2019] [Revised: 07/19/2019] [Accepted: 07/21/2019] [Indexed: 06/10/2023]
Abstract
The use of imidacloprid (IMI) and its formulated products in agriculture is a risk to aquatic organisms due to deposition into waterways from runoff and aerial spraying. However, there is limited information on the potential effects of this pesticide on commercially important shellfish, such as oysters. We investigated the impacts of IMI and Spectrum 200SC (IMI formulation) on the activity of the enzymes Glutathione-S-transferase (GST), Catalase (CAT) and Acetylcholinesterase (AChE), in different oyster tissues including the gill, adductor muscle and digestive gland. We also investigated the condition index and fatty acid composition of the flesh of oysters after 2 weeks exposure. The concentrations of IMI in the different tissues was assessed using Liquid Chromatography-Mass Spectrometry (LC-MS) after QuEChERS extraction. Higher concentrations of IMI residues were detected in the adductor muscle of the oysters, followed by the gills and with the lowest amounts recovered from the digestive gland across all the concentrations tested. IMI and Spectrum 200SC significantly affected the gill AChE activity at 2 mg/L, but digestive gland CAT, and gill and digestive gland GST were impacted at environmentally relevant concentrations (0.01 and 0.05 mg/L). In the whole oyster, 2 weeks exposure to IMI (≥0.01 mg/L) resulted in a proportional increase in saturated fatty acids (SFA), altered the polyunsaturated fatty acid (PUFA) to SFA ratio and altered the omega 3 fatty acids (n-3) to omega 6 fatty acids (n-6) ratio, but there were no effects on the condition index of the oyster. Although the oysters responded differently to the formulated product, there was no consistent difference in the sublethal effects of analytical IMI and Spectrum 200SC. This study showed that exposure to IMI and Spectrum 200SC can significantly affect the biochemical processes and metabolites in oysters, with implications for food quality and safety.
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Affiliation(s)
- Endurance E Ewere
- Marine Ecology Research Centre, Southern Cross University, PO Box 157, Lismore, NSW, 2480, Australia; Department of Animal and Environmental Biology, Faculty of Life Sciences, University of Benin, Benin City, Nigeria
| | - Amanda Reichelt-Brushett
- Marine Ecology Research Centre, Southern Cross University, PO Box 157, Lismore, NSW, 2480, Australia
| | - Kirsten Benkendorff
- Marine Ecology Research Centre, Southern Cross University, PO Box 157, Lismore, NSW, 2480, Australia.
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Di G, Li Y, Zhu G, Guo X, Li H, Huang M, Shen M, Ke C. Effects of acidification on the proteome during early development of Babylonia areolata. FEBS Open Bio 2019; 9:1503-1520. [PMID: 31268628 PMCID: PMC6722889 DOI: 10.1002/2211-5463.12695] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2019] [Revised: 06/24/2019] [Accepted: 07/02/2019] [Indexed: 11/11/2022] Open
Abstract
Increases in atmospheric CO2 partial pressure have lowered seawater pH in marine ecosystems, a process called ocean acidification (OA). The effects of OA during the critical stages of larval development may have disastrous consequences for some marine species, including Babylonia areolata (Link 1807), a commercially important sea snail in China and South East Asia. To investigate how OA affects the proteome of Babylonia areolata, here we used label-free proteomics to study protein changes in response to acidified (pH 7.6) or ambient seawater (pH 8.1) during three larvae developmental stages of B. areolata, namely, the veliger larvae before attachment (E1), veliger larvae after attachment (E2), and carnivorous juvenile snail (E3). In total, we identified 720 proteins. This result suggested that acidification seriously affects late veliger stage after attachment (E2). Further examination of the roles of differentially expressed proteins, which include glutaredoxin, heat-shock protein 70, thioredoxin, catalase, cytochrome-c-oxidase, peroxiredoxin 6, troponin T, CaM kinase II alpha, proteasome subunit N3 and cathepsin L, will be important for understanding the molecular mechanisms underlying pH reduction.
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Affiliation(s)
- Guilan Di
- College of FisheriesHenan Normal UniversityXinxiangChina
- State Key Laboratory of Marine Environmental ScienceCollege of Ocean and Earth SciencesXiamen UniversityXiamenChina
| | - Yanfei Li
- College of FisheriesHenan Normal UniversityXinxiangChina
| | - Guorong Zhu
- College of FisheriesHenan Normal UniversityXinxiangChina
| | - Xiaoyu Guo
- State Key Laboratory of Marine Environmental ScienceCollege of Ocean and Earth SciencesXiamen UniversityXiamenChina
| | - Hui Li
- College of FisheriesHenan Normal UniversityXinxiangChina
| | - Miaoqin Huang
- State Key Laboratory of Marine Environmental ScienceCollege of Ocean and Earth SciencesXiamen UniversityXiamenChina
| | - Minghui Shen
- State Key Laboratory of Marine Environmental ScienceCollege of Ocean and Earth SciencesXiamen UniversityXiamenChina
| | - Caihuan Ke
- State Key Laboratory of Marine Environmental ScienceCollege of Ocean and Earth SciencesXiamen UniversityXiamenChina
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Ji C, Lu Z, Xu L, Li F, Cong M, Shan X, Wu H. Evaluation of mitochondrial toxicity of cadmium in clam Ruditapes philippinarum using iTRAQ-based proteomics. Environ Pollut 2019; 251:802-810. [PMID: 31125810 DOI: 10.1016/j.envpol.2019.05.046] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2019] [Revised: 04/30/2019] [Accepted: 05/10/2019] [Indexed: 06/09/2023]
Abstract
Cadmium is one of the most serious metal pollutants in the Bohai Sea. Previous studies revealed that mitochondrion might be the target organelle of Cd toxicity. However, there is a lack of a global view on the mitochondrial responses in marine animals to Cd. In this work, the mitochondrial responses were characterized in clams Ruditapes philippinarum treated with two concentrations (5 and 50 μg/L) of Cd for 5 weeks using tetraethylbenzimidazolylcarbocyanine iodide (JC-1) staining, ultrastructural observation and quantitative proteomic analysis. Basically, a significant decrease of mitochondrial membrane potential (△Ψm) was observed in clams treated with the high concentration (50 μg/L) of Cd. Cd treatments also induced specific morphological changes indicated by elongated mitochondria. Furthermore, iTRAQ-based mitochondrial proteomics showed that a total of 97 proteins were significantly altered in response to Cd treatment. These proteins were closely associated with multiple biological processes in mitochondria, including tricarboxylic acid (TCA) cycle, oxidative phosphorylation, fatty acid β-oxidation, stress resistance and apoptosis, and mitochondrial fission. These findings confirmed that mitochondrion was one of the key targets of Cd toxicity. Moreover, dynamical regulations, such as reconstruction of energy homeostasis, induction of stress resistance and apoptosis, and morphological alterations, in mitochondria might play essential roles in Cd tolerance. Overall, this work provided a deep insight into the mitochondrial toxicity of Cd in clams based on a global mitochondrial proteomic analysis.
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Affiliation(s)
- Chenglong Ji
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, 264003, PR China; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237, PR China
| | - Zhen Lu
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, 264003, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Lanlan Xu
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, 264003, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Fei Li
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, 264003, PR China
| | - Ming Cong
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, 264003, PR China
| | - Xiujuan Shan
- Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237, PR China
| | - Huifeng Wu
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, 264003, PR China; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237, PR China.
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Dell'Acqua O, Trębala M, Chiantore M, Hannula SP. Robustness of Adamussium colbecki shell to ocean acidification in a short-term exposure. Mar Environ Res 2019; 149:90-99. [PMID: 31254931 DOI: 10.1016/j.marenvres.2019.06.010] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2019] [Revised: 06/12/2019] [Accepted: 06/16/2019] [Indexed: 06/09/2023]
Abstract
Atmospheric pCO2 has increased since the industrial revolution leading to a lowering of the ocean surface water pH, a phenomenon called ocean acidification (OA). OA is claimed to be a major threat for marine organisms and ecosystems and, particularly, for Polar regions. We explored the impact of OA on the shell mechanical properties of the Antarctic scallop Adamussium colbecki exposed for one month to acidified (pH 7.6) and natural conditions (unmanipulated littoral water), by performing Scanning Electron Microscopy, nanoindentation and Vickers indentation on the scallop shell. No effect of pH could be detected either in crystal deposition or in the mechanical properties. A. colbecki shell was found to be resistant to OA, which suggests this species to be able to face a climate change scenario that may threat the persistence of the endemic Antarctic species. Further investigation should be carried out in order to elucidate the destiny of this key species in light of global change.
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Affiliation(s)
- Ombretta Dell'Acqua
- Department for the Earth, Environment and Life Sciences (DiSTAV), University of Genoa, Italy.
| | - Michal Trębala
- Department of Chemistry and Materials Science, Aalto University, Espoo, Finland.
| | - Mariachiara Chiantore
- Department for the Earth, Environment and Life Sciences (DiSTAV), University of Genoa, Italy.
| | - Simo-Pekka Hannula
- Department of Chemistry and Materials Science, Aalto University, Espoo, Finland.
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Migliaccio O, Pinsino A, Maffioli E, Smith AM, Agnisola C, Matranga V, Nonnis S, Tedeschi G, Byrne M, Gambi MC, Palumbo A. Living in future ocean acidification, physiological adaptive responses of the immune system of sea urchins resident at a CO 2 vent system. Sci Total Environ 2019; 672:938-950. [PMID: 30981169 DOI: 10.1016/j.scitotenv.2019.04.005] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2018] [Revised: 02/20/2019] [Accepted: 04/01/2019] [Indexed: 06/09/2023]
Abstract
The effects of ocean acidification, a major anthropogenic impact on marine life, have been mainly investigated in laboratory/mesocosm experiments. We used the CO2 vents at Ischia as a natural laboratory to study the long-term effects of ocean acidification on the sea urchin Paracentrotus lividus population resident in low-pH (7.8 ± 0.2) compared to that at two control sites (pH 8.02 ± 0.00; 8.02 ± 0.01). The novelty of the present study is the analysis of the sea urchin immune cells, the sentinels of environmental stress responses, by a wide-ranging approach, including cell morphology, biochemistry and proteomics. Immune cell proteomics showed that 311 proteins were differentially expressed in urchins across sites with a general shift towards antioxidant processes in the vent urchins. The vent urchin immune cells showed higher levels of total antioxidant capacity, up-regulation of phagosome and microsomal proteins, enzymes of ammonium metabolism, amino-acid degradation, and modulation of carbon metabolism proteins. Lipid-hydroperoxides and nitric oxide levels were not different in urchins from the different sites. No differences in the coelomic fluid pH, immune cell composition, animal respiration, nitrogen excretion and skeletal mineralogy were observed. Our results reveal the phenotypic plasticity of the immune system of sea urchins adapted to life at vent site, under conditions commensurate with near-future ocean acidification projections.
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Affiliation(s)
- Oriana Migliaccio
- Stazione Zoologica Anton Dohrn, Department of Biology and Evolution of Marine Organisms, Naples, Italy
| | - Annalisa Pinsino
- Istituto di Biomedicina e Immunologia Molecolare "Alberto Monroy", Consiglio Nazionale delle Ricerche, Palermo, Italy
| | - Elisa Maffioli
- DIMEVET - Section of Biochemistry, University of Milan, Milan, Italy
| | - Abigail M Smith
- Department of Marine Science, University of Otago, Dunedin, New Zealand
| | - Claudio Agnisola
- Department of Biology, University of Naples Federico II, Naples, Italy
| | - Valeria Matranga
- Istituto di Biomedicina e Immunologia Molecolare "Alberto Monroy", Consiglio Nazionale delle Ricerche, Palermo, Italy
| | - Simona Nonnis
- DIMEVET - Section of Biochemistry, University of Milan, Milan, Italy
| | | | - Maria Byrne
- School of Medical and Science and School of Life and Environmental Science, University of Sydney, Sydney, Australia
| | - Maria Cristina Gambi
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology (Villa Dohrn-Benthic Ecology Center), Ischia, Naples, Italy
| | - Anna Palumbo
- Stazione Zoologica Anton Dohrn, Department of Biology and Evolution of Marine Organisms, Naples, Italy.
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Abstract
Applying a proteomic approach for biomonitoring marine environments offers a useful tool for identifying organisms’ stress responses, with benthic filter-feeders being ideal candidates for this practice. Here, we investigated the proteomic profile of two solitary ascidians (Chordata, Ascidiacea): Microcosmus exasperatus, collected from five sites along the Mediterranean coast of Israel; and Polycarpa mytiligera collected from four sites along the Red Sea coast. 193 and 13 proteins in M. exasperatus and P. mytiligera, respectively, demonstrated a significant differential expression. Significant differences were found between the proteomes from the northern and the southern sites along both the Mediterranean and the Red Sea coasts. Some of the significant proteins had previously been shown to be affected by environmental stressors, and thus have the potential to be further developed as biomarkers. Obtaining a proteomic profile of field-collected ascidians provides a useful tool for the early-detection of a stress response in ascidians worldwide.
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Affiliation(s)
- Zafrir Kuplik
- School of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
- * E-mail:
| | - Lion Novak
- School of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
| | - Noa Shenkar
- School of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
- Steinhardt Museum of Natural History, Israel National Center for Biodiversity Studies Tel Aviv University, Tel Aviv, Israel
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Martin VAS, Gelcich S, Vásquez Lavín F, Ponce Oliva RD, Hernández JI, Lagos NA, Birchenough SNR, Vargas CA. Linking social preferences and ocean acidification impacts in mussel aquaculture. Sci Rep 2019; 9:4719. [PMID: 30886175 PMCID: PMC6423318 DOI: 10.1038/s41598-019-41104-5] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Accepted: 02/20/2019] [Indexed: 12/28/2022] Open
Abstract
Ocean Acidification (OA) has become one of the most studied global stressors in marine science during the last fifteen years. Despite the variety of studies on the biological effects of OA with marine commercial species, estimations of these impacts over consumers' preferences have not been studied in detail, compromising our ability to undertake an assessment of market and economic impacts resulting from OA at local scales. Here, we use a novel and interdisciplinary approach to fill this gap. We experimentally test the impact of OA on commercially relevant physical and nutritional attributes of mussels, and then we use economic discrete choice models to assess the marginal effects of these impacts over consumers' preferences and wellbeing. Results showed that attributes, which were significantly affected by OA, are also those preferred by consumers. Consumers are willing to pay on average 52% less for mussels with evidences of OA and are willing to increase the price they pay to avoid negative changes in attributes due to OA. The interdisciplinary approach developed here, complements research conducted on OA by effectively informing how OA economic impacts can be analyzed under the lens of marginal changes in market price and consumer' welfare. Thereby, linking global phenomena to consumers' wellbeing, and shifting the focus of OA impacts to assess the effects of local vulnerabilities in a wider context of people and businesses.
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Affiliation(s)
- Valeska A San Martin
- Department of Aquatic Systems, Faculty of Environmental Sciences, Universidad de Concepcion, Concepcion, Chile
- Centre for the Study of Multiple-Drivers on Marine Socio-Ecological Systems (MUSELS), Universidad de Concepción, Concepción, Chile
| | - Stefan Gelcich
- Centre for the Study of Multiple-Drivers on Marine Socio-Ecological Systems (MUSELS), Universidad de Concepción, Concepción, Chile
- Centre of Applied Ecology and Sustainability, Department of Ecology, Pontificia Universidad Católica de Chile, Santiago, Chile
| | - Felipe Vásquez Lavín
- Centre for the Study of Multiple-Drivers on Marine Socio-Ecological Systems (MUSELS), Universidad de Concepción, Concepción, Chile
- Centre of Applied Ecology and Sustainability, Department of Ecology, Pontificia Universidad Católica de Chile, Santiago, Chile
- School of Economics and Business, Universidad del Desarrollo, Concepcion, Chile
| | - Roberto D Ponce Oliva
- Centre for the Study of Multiple-Drivers on Marine Socio-Ecological Systems (MUSELS), Universidad de Concepción, Concepción, Chile
- Centre of Applied Ecology and Sustainability, Department of Ecology, Pontificia Universidad Católica de Chile, Santiago, Chile
- School of Economics and Business, Universidad del Desarrollo, Concepcion, Chile
| | - José I Hernández
- Centre for the Study of Multiple-Drivers on Marine Socio-Ecological Systems (MUSELS), Universidad de Concepción, Concepción, Chile
- School of Economics and Business, Universidad del Desarrollo, Concepcion, Chile
| | - Nelson A Lagos
- Centre for the Study of Multiple-Drivers on Marine Socio-Ecological Systems (MUSELS), Universidad de Concepción, Concepción, Chile
- Centro de Investigación e Innovación para el Cambio Climático (CiiCC), Facultad de Ciencias, Universidad Santo Tomás, Santiago, Chile
| | | | - Cristian A Vargas
- Department of Aquatic Systems, Faculty of Environmental Sciences, Universidad de Concepcion, Concepcion, Chile.
- Centre for the Study of Multiple-Drivers on Marine Socio-Ecological Systems (MUSELS), Universidad de Concepción, Concepción, Chile.
- Millennium Institute of Oceanography (IMO), Universidad de Concepcion, Concepcion, Chile.
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38
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Fernández Robledo JA, Yadavalli R, Allam B, Pales Espinosa E, Gerdol M, Greco S, Stevick RJ, Gómez-Chiarri M, Zhang Y, Heil CA, Tracy AN, Bishop-Bailey D, Metzger MJ. From the raw bar to the bench: Bivalves as models for human health. Dev Comp Immunol 2019; 92:260-282. [PMID: 30503358 PMCID: PMC6511260 DOI: 10.1016/j.dci.2018.11.020] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2018] [Revised: 11/09/2018] [Accepted: 11/24/2018] [Indexed: 05/05/2023]
Abstract
Bivalves, from raw oysters to steamed clams, are popular choices among seafood lovers and once limited to the coastal areas. The rapid growth of the aquaculture industry and improvement in the preservation and transport of seafood have enabled them to be readily available anywhere in the world. Over the years, oysters, mussels, scallops, and clams have been the focus of research for improving the production, managing resources, and investigating basic biological and ecological questions. During this decade, an impressive amount of information using high-throughput genomic, transcriptomic and proteomic technologies has been produced in various classes of the Mollusca group, and it is anticipated that basic and applied research will significantly benefit from this resource. One aspect that is also taking momentum is the use of bivalves as a model system for human health. In this review, we highlight some of the aspects of the biology of bivalves that have direct implications in human health including the shell formation, stem cells and cell differentiation, the ability to fight opportunistic and specific pathogens in the absence of adaptive immunity, as source of alternative drugs, mucosal immunity and, microbiome turnover, toxicology, and cancer research. There is still a long way to go; however, the next time you order a dozen oysters at your favorite raw bar, think about a tasty model organism that will not only please your palate but also help unlock multiple aspects of molluscan biology and improve human health.
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Affiliation(s)
| | | | - Bassem Allam
- Stony Brook University, School of Marine and Atmospheric Sciences, Stony Brook, NY, 11794, USA
| | | | - Marco Gerdol
- University of Trieste, Department of Life Sciences, 34127, Trieste, Italy
| | - Samuele Greco
- University of Trieste, Department of Life Sciences, 34127, Trieste, Italy
| | - Rebecca J Stevick
- University of Rhode Island, Graduate School of Oceanography, Narragansett, RI, 02882, USA
| | - Marta Gómez-Chiarri
- University of Rhode Island, Department of Fisheries, Animal and Veterinary Science, Kingston, RI, 02881, USA
| | - Ying Zhang
- University of Rhode Island, Department of Cell and Molecular Biology, Kingston, RI, 02881, USA
| | - Cynthia A Heil
- Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, 04544, USA
| | - Adrienne N Tracy
- Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, 04544, USA; Colby College, Waterville, 4,000 Mayflower Hill Dr, ME, 04901, USA
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Meng Y, Guo Z, Yao H, Yeung KWK, Thiyagarajan V. Calcium carbonate unit realignment under acidification: A potential compensatory mechanism in an edible estuarine oyster. Mar Pollut Bull 2019; 139:141-149. [PMID: 30686412 DOI: 10.1016/j.marpolbul.2018.12.030] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2018] [Revised: 12/10/2018] [Accepted: 12/13/2018] [Indexed: 05/27/2023]
Abstract
Ocean acidification (OA) is well-known for impairing marine calcification; however, the end response of several essential species to this perturbation remains unknown. Decreased pH and saturation levels (Ω) of minerals under OA is projected to alter shell crystallography and thus to reduce shell mechanical properties. This study examined this hypothesis using a commercially important estuarine oyster Magallana hongkongensis. Although shell damage occurred on the outmost prismatic layer and the undying myostracum at decreased pH 7.6 and 7.3, the major foliated layer was relatively unharmed. Oysters maintained their shell hardness and stiffness through altered crystal unit orientation under pH 7.6 conditions. However, under the undersaturated conditions (ΩCal ~ 0.8) at pH 7.3, the realigned crystal units in foliated layer ultimately resulted in less stiff shells which indicated although estuarine oysters are mechanically resistant to unfavorable calcification conditions, extremely low pH condition is still a threat to this essential species.
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Affiliation(s)
- Yuan Meng
- The Swire Institute of Marine Sciences, School of Biological Sciences, The University of Hong Kong, Hong Kong Special Administrative Region, China
| | - Zhenbin Guo
- Department of Mechanical Engineering, The Hong Kong Polytechnic University, Hong Kong Special Administrative Region, China
| | - Haimin Yao
- Department of Mechanical Engineering, The Hong Kong Polytechnic University, Hong Kong Special Administrative Region, China
| | - Kelvin W K Yeung
- Department of Orthopaedics and Traumatology, Queen Mary Hospital, The University of Hong Kong, Hong Kong Special Administrative Region, China
| | - V Thiyagarajan
- The Swire Institute of Marine Sciences, School of Biological Sciences, The University of Hong Kong, Hong Kong Special Administrative Region, China; State Key Laboratory for Marine Pollution, Hong Kong Special Administrative Region, China.
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40
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Spencer LH, Horwith M, Lowe AT, Venkataraman YR, Timmins-Schiffman E, Nunn BL, Roberts SB. Pacific geoduck (Panopea generosa) resilience to natural pH variation. Comp Biochem Physiol Part D Genomics Proteomics 2019; 30:91-101. [PMID: 30818101 DOI: 10.1016/j.cbd.2019.01.010] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2018] [Revised: 01/10/2019] [Accepted: 01/14/2019] [Indexed: 02/02/2023]
Abstract
Pacific geoduck aquaculture is a growing industry, however, little is known about how geoduck respond to varying environmental conditions, or how the industry will fare under projected climate conditions. To understand how geoduck production may be impacted by low pH associated with ocean acidification, multi-faceted environmental heterogeneity needs to be included to understand species and community responses. In this study, eelgrass habitats and environmental heterogeneity across four estuarine bays were leveraged to examine low pH effects on geoduck under different natural regimes, using targeted proteomics to assess physiology. Juvenile geoduck were deployed in eelgrass and adjacent unvegetated habitats for 30 days while pH, temperature, dissolved oxygen, and salinity were monitored. Across the four bays, pH was lower in unvegetated habitats compared to eelgrass habitats. However this did not impact geoduck growth, survival, or proteomic abundance patterns in gill tissue. Temperature and dissolved oxygen differences across all locations corresponded to differences in growth and targeted protein abundance patterns. Specifically, three protein abundance levels (trifunctional-enzyme β-subunit, puromycin-sensitive aminopeptidase, and heat shock protein 90-α) and shell growth positively correlated with dissolved oxygen variability and inversely correlated with mean temperature. These results demonstrate that geoduck may be resilient to low pH in a natural setting, but other abiotic factors (i.e. temperature, dissolved oxygen variability) may have a greater influence on geoduck physiology. In addition this study contributes to the understanding of how eelgrass patches influences water chemistry.
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Affiliation(s)
- Laura H Spencer
- University of Washington, School of Aquatic and Fishery Sciences, 1122 NE Boat St, Seattle, WA 98105, United States
| | - Micah Horwith
- Washington State Department of Natural Resources, 1111 Washington St SE, MS 47027, Olympia, WA 98504, United States
| | - Alexander T Lowe
- University of Washington, Biological Sciences, 24 Kincaid Hall, Seattle, WA 98105, United States
| | - Yaamini R Venkataraman
- University of Washington, School of Aquatic and Fishery Sciences, 1122 NE Boat St, Seattle, WA 98105, United States
| | - Emma Timmins-Schiffman
- University of Washington, Genome Sciences, William H. Foege Hall, 3720 15th Ave NE, Seattle, WA 98195, United States
| | - Brook L Nunn
- University of Washington, Genome Sciences, William H. Foege Hall, 3720 15th Ave NE, Seattle, WA 98195, United States
| | - Steven B Roberts
- University of Washington, School of Aquatic and Fishery Sciences, 1122 NE Boat St, Seattle, WA 98105, United States.
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Calosi P, Putnam HM, Twitchett RJ, Vermandele F. Marine Metazoan Modern Mass Extinction: Improving Predictions by Integrating Fossil, Modern, and Physiological Data. Ann Rev Mar Sci 2019; 11:369-390. [PMID: 30216738 DOI: 10.1146/annurev-marine-010318-095106] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Evolution, extinction, and dispersion are fundamental processes affecting marine biodiversity. Until recently, studies of extant marine systems focused mainly on evolution and dispersion, with extinction receiving less attention. Past extinction events have, however, helped shape the evolutionary history of marine ecosystems, with ecological and evolutionary legacies still evident in modern seas. Current anthropogenic global changes increase extinction risk and pose a significant threat to marine ecosystems, which are critical for human use and sustenance. The evaluation of these threats and the likely responses of marine ecosystems requires a better understanding of evolutionary processes that affect marine ecosystems under global change. Here, we discuss how knowledge of ( a) changes in biodiversity of ancient marine ecosystems to past extinctions events, ( b) the patterns of sensitivity and biodiversity loss in modern marine taxa, and ( c) the physiological mechanisms underpinning species' sensitivity to global change can be exploited and integrated to advance our critical thinking in this area.
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Affiliation(s)
- Piero Calosi
- Département de Biologie, Chimie et Géographie, Université du Québec à Rimouski, Rimouski, Quebec G5L 3A1, Canada; ,
| | - Hollie M Putnam
- Department of Biological Sciences, University of Rhode Island, Kingston, Rhode Island 02881, USA;
| | - Richard J Twitchett
- Department of Earth Sciences, Natural History Museum, London SW7 5BD, United Kingdom;
| | - Fanny Vermandele
- Département de Biologie, Chimie et Géographie, Université du Québec à Rimouski, Rimouski, Quebec G5L 3A1, Canada; ,
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42
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Maynard A, Bible JM, Pespeni MH, Sanford E, Evans TG. Transcriptomic responses to extreme low salinity among locally adapted populations of Olympia oyster (Ostrea lurida). Mol Ecol 2018; 27:4225-4240. [PMID: 30193406 DOI: 10.1111/mec.14863] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2018] [Revised: 08/23/2018] [Accepted: 08/27/2018] [Indexed: 12/26/2022]
Abstract
The Olympia oyster (Ostrea lurida) is a foundation species inhabiting estuaries along the North American west coast. In California estuaries, O. lurida is adapted to local salinity regimes and populations differ in low salinity tolerance. In this study, oysters from three California populations were reared for two generations in a laboratory common garden and subsequently exposed to low salinity seawater. Comparative transcriptomics was then used to understand species-level responses to hyposmotic stress and population-level mechanisms underlying divergent salinity tolerances. Gene expression patterns indicate Olympia oysters are sensitive to hyposmotic stress: All populations respond to low salinity by up-regulating transcripts indicative of protein unfolding, DNA damage and cell cycle arrest after sub-lethal exposure. Among O. lurida populations, transcriptomic profiles differed constitutively and in response to low salinity. Despite two generations in common-garden conditions, transcripts encoding apoptosis modulators were constitutively expressed at significantly different levels in the most tolerant population. Expression of cell death regulators may facilitate cell fate decisions when salinity declines. Following low salinity exposure, oysters from the more tolerant population expressed a small number of mRNAs at significantly higher levels than less tolerant populations. Proteins encoded by these transcripts regulate ciliary activity within the mantle cavity and may function to prolong valve closure and reduce mortality in low salinity seawater. Collectively, gene expression patterns suggest sub-lethal impacts of hyposmotic stress in Olympia oysters are considerable and that even oysters with greater low salinity tolerance may be vulnerable to future freshwater flooding events.
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Affiliation(s)
- Ashley Maynard
- Department of Biological Sciences, California State University East Bay, Hayward, California
| | - Jillian M Bible
- Department of Evolution and Ecology and Bodega Marine Laboratory, University of California Davis, Bodega Bay, California.,Department of Environmental Science and Studies, Washington College, Chestertown, Maryland
| | | | - Eric Sanford
- Department of Evolution and Ecology and Bodega Marine Laboratory, University of California Davis, Bodega Bay, California
| | - Tyler G Evans
- Department of Biological Sciences, California State University East Bay, Hayward, California
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Maas AE, Blanco-Bercial L, Lo A, Tarrant AM, Timmins-Schiffman E. Variations in Copepod Proteome and Respiration Rate in Association with Diel Vertical Migration and Circadian Cycle. Biol Bull 2018; 235:30-42. [PMID: 30160998 DOI: 10.1086/699219] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
The diel vertical migration of zooplankton is a process during which individuals spend the night in surface waters and retreat to depth during the daytime, with substantial implications for carbon transport and the ecology of midwater ecosystems. The physiological consequences of this daily pattern have, however, been poorly studied beyond investigations of speed and the energetic cost of swimming. Many other processes are likely influenced, such as fuel use, energetic trade-offs, underlying diel (circadian) rhythms, and antioxidant responses. Using a new reference transcriptome, proteomic analyses were applied to compare the physiological state of a migratory copepod, Pleuromamma xiphias, immediately after arriving to the surface at night and six hours later. Oxygen consumption was monitored semi-continuously to explore underlying cyclical patterns in metabolic rate under dark-dark conditions. The proteomic analysis suggests a distinct shift in physiology that reflects migratory exertion and changes in metabolism. These proteomic analyses are supported by the respiration experiments, which show an underlying cycle in metabolic rate, with a peak at dawn. This project generates molecular tools (transcriptome and proteome) that will allow for more detailed understanding of the underlying physiological processes that influence and are influenced by diel vertical migration. Further, these studies suggest that P. xiphias is a tractable model for continuing investigations of circadian and diel vertical migration influences on plankton physiology. Previous studies did not account for this cyclic pattern of respiration and may therefore have unrepresented respiratory carbon fluxes from copepods by about 24%.
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Key Words
- ACN, acetonitrile
- ANOSIM, analysis of similarity
- BATS, Bermuda Atlantic Time Series
- BUSCO, Benchmarking Universal Single-Copy Orthologs
- DM, dry mass
- DVM, diel vertical migration
- FFT-NLLS, fast Fourier transform non-linear least squares
- GO, gene ontology
- MESA, maximum entropy spectral analysis
- NAD+, oxidized nicotinamide adenine dinucleotide
- NAD, nicotinamide adenine dinucleotide
- NADH, reduced nicotinamide adenine dinucleotide
- NMDS, non-metric multidimensional scaling
- NSAF, normalized spectral abundance factor
- RT, room temperature
- TTP, Trans Proteomic Pipeline
- nr, non-redundant database
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44
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Timmins-Schiffman E, Mikan MP, Ting YS, Harvey HR, Nunn BL. MS analysis of a dilution series of bacteria:phytoplankton to improve detection of low abundance bacterial peptides. Sci Rep 2018; 8:9276. [PMID: 29915279 PMCID: PMC6006377 DOI: 10.1038/s41598-018-27650-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2017] [Accepted: 06/06/2018] [Indexed: 11/17/2022] Open
Abstract
Assigning links between microbial activity and biogeochemical cycles in the ocean is a primary objective for ecologists and oceanographers. Bacteria represent a small ecosystem component by mass, but act as the nexus for both nutrient transformation and organic matter recycling. There are limited methods to explore the full suite of active bacterial proteins largely responsible for degradation. Mass spectrometry (MS)-based proteomics now has the potential to document bacterial physiology within these complex systems. Global proteome profiling using MS, known as data dependent acquisition (DDA), is limited by the stochastic nature of ion selection, decreasing the detection of low abundance peptides. The suitability of MS-based proteomics methods in revealing bacterial signatures outnumbered by phytoplankton proteins was explored using a dilution series of pure bacteria (Ruegeria pomeroyi) and diatoms (Thalassiosira pseudonana). Two common acquisition strategies were utilized: DDA and selected reaction monitoring (SRM). SRM improved detection of bacterial peptides at low bacterial cellular abundance that were undetectable with DDA from a wide range of physiological processes (e.g. amino acid synthesis, lipid metabolism, and transport). We demonstrate the benefits and drawbacks of two different proteomic approaches for investigating species-specific physiological processes across relative abundances of bacteria that vary by orders of magnitude.
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Affiliation(s)
| | - Molly P Mikan
- Old Dominion University, Department of Ocean, Earth, and Atmospheric Sciences, Norfolk, VA, 23529, USA
| | - Ying Sonia Ting
- University of Washington, Department of Genome Sciences, Seattle, WA, 98195, USA
- Neon Therapeutics, Boston, MA, 02139, USA
| | - H Rodger Harvey
- Old Dominion University, Department of Ocean, Earth, and Atmospheric Sciences, Norfolk, VA, 23529, USA
| | - Brook L Nunn
- University of Washington, Department of Genome Sciences, Seattle, WA, 98195, USA.
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45
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Silva CSE, Lemos MFL, Faria AM, Lopes AF, Mendes S, Gonçalves EJ, Novais SC. Sand smelt ability to cope and recover from ocean's elevated CO 2 levels. Ecotoxicol Environ Saf 2018; 154:302-310. [PMID: 29477920 DOI: 10.1016/j.ecoenv.2018.02.011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2017] [Revised: 01/25/2018] [Accepted: 02/02/2018] [Indexed: 06/08/2023]
Abstract
Considered a major environmental concern, ocean acidification has induced a recent research boost into effects on marine biodiversity and possible ecological, physiological, and behavioural impacts. Although the majority of literature indicate negative effects of future acidification scenarios, most studies are conducted for just a few days or weeks, which may be insufficient to detect the capacity of an organism to adjust to environmental changes through phenotypic plasticity. Here, the effects and the capacity of sand smelt larvae Atherina presbyter to cope and recover (through a treatment combination strategy) from short (15 days) and long-term exposure (45 days) to increasing pCO2 levels (control: ~515 μatm, pH = 8.07; medium: ~940 μatm, pH = 7.84; high: ~1500 μatm, pH = 7.66) were measured, addressing larval development traits, behavioural lateralization, and biochemical biomarkers related with oxidative stress and damage, and energy metabolism and reserves. Although behavioural lateralization was not affected by high pCO2 exposure, morphometric changes, energetic costs, and oxidative stress damage were impacted differently through different exposures periods. Generally, short-time exposures led to different responses to either medium or high pCO2 levels (e.g. development, cellular metabolism, or damage), while on the long-term the response patterns tend to become similar between them, with both acidification scenarios inducing DNA damage and tending to lower growth rates. Additionally, when organisms were transferred to lower acidified condition, they were not able to recover from the mentioned DNA damage impacts. Overall, results suggest that exposure to future ocean acidification scenarios can induce sublethal effects on early life-stages of fish, but effects are dependent on duration of exposure, and are likely not reversible. Furthermore, to improve our understanding on species sensitivity and adaptation strategies, results reinforce the need to use multiple biological endpoints when assessing the effects of ocean acidification on marine organisms.
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Affiliation(s)
- Cátia S E Silva
- MARE - Marine and Environmental Sciences Centre, ESTM, Instituto Politécnico de Leiria, Avenida do Porto de Pesca, 2520-630 Peniche, Portugal.
| | - Marco F L Lemos
- MARE - Marine and Environmental Sciences Centre, ESTM, Instituto Politécnico de Leiria, Avenida do Porto de Pesca, 2520-630 Peniche, Portugal
| | - Ana M Faria
- MARE - Marine and Environmental Sciences Centre, ISPA-IU, Rua Jardim do Tabaco, 1149-041 Lisboa, Portugal
| | - Ana F Lopes
- MARE - Marine and Environmental Sciences Centre, ISPA-IU, Rua Jardim do Tabaco, 1149-041 Lisboa, Portugal
| | - Susana Mendes
- MARE - Marine and Environmental Sciences Centre, ESTM, Instituto Politécnico de Leiria, Avenida do Porto de Pesca, 2520-630 Peniche, Portugal
| | - Emanuel J Gonçalves
- MARE - Marine and Environmental Sciences Centre, ISPA-IU, Rua Jardim do Tabaco, 1149-041 Lisboa, Portugal
| | - Sara C Novais
- MARE - Marine and Environmental Sciences Centre, ESTM, Instituto Politécnico de Leiria, Avenida do Porto de Pesca, 2520-630 Peniche, Portugal; Department of Ecological Science, Vrije University, Amsterdam, The Netherlands
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Faria AM, Lopes AF, Silva CSE, Novais SC, Lemos MFL, Gonçalves EJ. Reproductive trade-offs in a temperate reef fish under high pCO 2 levels. Mar Environ Res 2018; 137:8-15. [PMID: 29500051 DOI: 10.1016/j.marenvres.2018.02.027] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2018] [Revised: 02/23/2018] [Accepted: 02/23/2018] [Indexed: 06/08/2023]
Abstract
Fishes are currently facing novel types of anthropogenic stressors that have never experienced in their evolutionary history, such as ocean acidification. Under these stressful conditions, energetically costly processes, such as reproduction, may be sacrificed for increased chances of survival. This trade-off does not only affect the organism itself but may result in reduced offspring fitness. In the present study, the effects of exposure to high pCO2 levels were tested on the reproductive performance of a temperate species, the two-spotted goby, Gobiusculus flavescens. Breeding pairs were kept under control (∼600 μatm, pH∼ 8.05) and high pCO2 levels (∼2300 μatm, pH∼ 7.60) conditions for a 4-month period. Additionally, oxidative stress and energy metabolism-related biomarkers were measured. Results suggest that reproductive activity is stimulated under high pCO2 levels. Parental pairs in the simulated ocean acidification conditions exhibited increased reproductive output, with 50% more clutches and 44% more eggs per clutch than pairs under control conditions. However, there was an apparent trade-off between offspring number and size, as larvae of parental pairs under high pCO2 levels hatched significantly smaller, suggesting differences in parental provisioning, which could be related to the fact that these females produce more eggs. Moreover, results support the hypothesis of different energy allocation strategies used by females under high pCO2 conditions. These changes might, ultimately, affect individual fitness and population replenishment.
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Affiliation(s)
- A M Faria
- MARE - Marine and Environmental Sciences Centre, ISPA- Instituto Universitário, Portugal.
| | - A F Lopes
- MARE - Marine and Environmental Sciences Centre, ISPA- Instituto Universitário, Portugal
| | - C S E Silva
- MARE -Marine and Environmental Sciences Centre, ESTM, Instituto Politécnico de Leiria, Portugal
| | - S C Novais
- MARE -Marine and Environmental Sciences Centre, ESTM, Instituto Politécnico de Leiria, Portugal; Department of Ecological Science, Vrije University, Amsterdam, The Netherlands
| | - M F L Lemos
- MARE -Marine and Environmental Sciences Centre, ESTM, Instituto Politécnico de Leiria, Portugal
| | - E J Gonçalves
- MARE - Marine and Environmental Sciences Centre, ISPA- Instituto Universitário, Portugal
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Sivka U, Toplak N, Koren S, Jakše J. De novo transcriptome of the pallial gland of the date mussel ( Lithophaga lithophaga ). Comparative Biochemistry and Physiology Part D: Genomics and Proteomics 2018; 26:1-9. [DOI: 10.1016/j.cbd.2018.02.001] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2017] [Revised: 01/31/2018] [Accepted: 02/01/2018] [Indexed: 11/28/2022]
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48
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Moreira A, Figueira E, Pecora IL, Soares AMVM, Freitas R. Native and exotic oysters in Brazil: Comparative tolerance to hypercapnia. Environ Res 2018; 161:202-211. [PMID: 29156343 DOI: 10.1016/j.envres.2017.10.035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2017] [Revised: 10/20/2017] [Accepted: 10/21/2017] [Indexed: 06/07/2023]
Abstract
Environmental hypercapnia in shallow coastal marine ecosystems can be exacerbated by increasing levels of atmospheric CO2. In these ecosystems organisms are expected to become increasingly subjected to pCO2 levels several times higher than those inhabiting ocean waters (e.g.: 10,000µatm), but still our current understanding on different species capacity to respond to such levels of hypercapnia is limited. Oysters are among the most important foundation species inhabiting these coastal ecosystems, although natural oyster banks are increasingly threatened worldwide. In the present study we studied the effects of hypercapnia on two important oyster species, the pacific oyster C. gigas and the mangrove oyster C. brasiliana, to bring new insights on different species response mechanisms towards three hypercapnic levels (ca. 1,000; 4,000; 10,000 µatm), by study of a set of biomarkers related to metabolic potential (electron transport system - ETS), antioxidant capacity (SOD, CAT, GSH), cellular damage (LPO) and energetic fitness (GLY), in two life stages (juvenile and adult) after 28 days of exposure. Results showed marked differences between each species tolerance capacity to hypercapnia, with contrasting metabolic readjustment strategies (ETS), different antioxidant response capacities (SOD, CAT, GSH), which generally allowed to prevent increased cellular damage (LPO) and energetic impairment (GLY) in both species. Juveniles were more responsive to hypercapnia stress in both congeners, and are likely to be most sensitive to extreme hypercapnia in the environment. Juvenile C. gigas presented more pronounced biochemical alterations at intermediate hypercapnia (4,000µatm) than C. brasiliana. Adult C. gigas showed biochemical alterations mostly in response to high hypercapnia (10,000µatm), while adult C. brasiliana were less responsive to this environmental stressor, despite presenting decreased metabolic potential. Our data bring new insights on the biochemical performance of two important oyster species, and suggest that the duration of extreme hypercapnia events in the ecosystem may pose increased challenges for these organisms as their tolerance capacity may be time limited.
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Affiliation(s)
- Anthony Moreira
- Departmento de Biologia & CESAM, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal
| | - Etelvina Figueira
- Departmento de Biologia & CESAM, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal
| | - Iracy L Pecora
- Campus do Litoral Paulista - Instituto de Biociências, Universidade Estadual Paulista "Júlio de Mesquita Filho", Praça Infante Dom Henrique s/n São Vicente, CEP 11330-900 São Paulo, Brazil
| | - Amadeu M V M Soares
- Departmento de Biologia & CESAM, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal
| | - Rosa Freitas
- Departmento de Biologia & CESAM, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal.
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Freitas R, Coppola F, Henriques B, Wrona F, Figueira E, Pereira E, Soares AMVM. Does pre-exposure to warming conditions increase Mytilus galloprovincialis tolerance to Hg contamination? Comp Biochem Physiol C Toxicol Pharmacol 2017; 203:1-11. [PMID: 28965928 DOI: 10.1016/j.cbpc.2017.09.010] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/21/2017] [Revised: 09/21/2017] [Accepted: 09/26/2017] [Indexed: 11/25/2022]
Abstract
UNLABELLED The degree to which marine invertebrate populations can tolerate extreme weather events, such as short-term exposure to high temperatures, and the underlying biochemical response mechanisms are not yet fully understood. Furthermore, scarce information is available on how marine organisms respond to the presence of pollutants after exposure to heat stress conditions. Therefore, the present study aimed to understand how the mussel Mytilus galloprovincialis responds to Hg pollution after pre-exposure to warming conditions. Mussels were exposed to control (17°C) and warming (21°C) conditions during 14days, followed by Hg contamination during 28days under different temperature regimes (17 and 21°C). The results obtained demonstrated significantly higher Hg concentrations in mussels under 17°C during the entire experiment than in organisms exposed to 21°C during the same period, which resulted in higher oxidative stress in mussels under control temperature. Significantly higher Hg concentrations were also observed in mussels pre-exposed to 21°C followed by a 17°C exposure comparing with organisms maintained the entire experiment at 21°C. These results may be explained by higher metabolic capacity in organisms exposed to 17°C after pre-exposure to 21°C that although induced antioxidant defences were not enough to prevent oxidative stress. No significant differences in terms of Hg concentration were found between mussels exposed to 17°C during the entire experiment and organisms pre-exposed to 21°C followed by a 17°C exposure, leading to similar oxidative stress levels in mussels exposed to both conditions. Therefore, our findings demonstrated that pre-exposure to warming conditions did not change mussels' accumulation and tolerance to Hg in comparison to Hg contaminated mussels maintained at control temperature. Furthermore, the present study indicate that organisms maintained under warming conditions for long periods may prevent the accumulation of pollutants by decreasing their metabolism which will limit cellular injuries. CAPSULE Mussels under warming conditions presented reduced metabolic capacity, resulting in lower Hg accumulation, which in turn prevented higher damages and, consequently, physiological impairments.
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Affiliation(s)
- Rosa Freitas
- Departamento de Biologia & CESAM, Universidade de Aveiro, 3810-193 Aveiro, Portugal.
| | - Francesca Coppola
- Departamento de Biologia & CESAM, Universidade de Aveiro, 3810-193 Aveiro, Portugal
| | - Bruno Henriques
- Departamento de Química & CESAM, Universidade de Aveiro, 3810-193 Aveiro, Portugal; CIIMAR, Universidade do Porto, 4050-123 Porto, Portugal
| | - Fredrick Wrona
- Departamento de Biologia & CESAM, Universidade de Aveiro, 3810-193 Aveiro, Portugal; Department of Geography, University of Victoria, National Water Research Institute, STN CSC, Victoria, BC, Canada
| | - Etelvina Figueira
- Departamento de Biologia & CESAM, Universidade de Aveiro, 3810-193 Aveiro, Portugal
| | - Eduarda Pereira
- Departamento de Química & CESAM, Universidade de Aveiro, 3810-193 Aveiro, Portugal
| | - Amadeu M V M Soares
- Departamento de Biologia & CESAM, Universidade de Aveiro, 3810-193 Aveiro, Portugal
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50
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Coppola F, Almeida Â, Henriques B, Soares AMVM, Figueira E, Pereira E, Freitas R. Biochemical impacts of Hg in Mytilus galloprovincialis under present and predicted warming scenarios. Sci Total Environ 2017; 601-602:1129-1138. [PMID: 28599369 DOI: 10.1016/j.scitotenv.2017.05.201] [Citation(s) in RCA: 75] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2017] [Revised: 05/21/2017] [Accepted: 05/22/2017] [Indexed: 06/07/2023]
Abstract
The interest in the consequences of climate change on the physiological and biochemical functioning of marine organisms is increasing, but the indirect and interactive effects resulting from warming on bioconcentration and responsiveness to pollutants are still poorly explored, particularly in terms of cellular responses. The present study investigated the impacts of Hg in Mytilus galloprovincialis under control (17°C) and warming (21°C) conditions, assessing mussels Hg bioconcentration capacity, metabolic and oxidative status after 14 and 28days of exposure. Results obtained showed greater impacts in mussels exposed for 28days in comparison to 14days of exposure. Furthermore, our findings revealed that the increase in temperature from 17 to 21°C reduced the bioconcentration of Hg by M. galloprovincialis, which may explain higher mortality rates at 17°C in comparison to 21°C. Lower Hg concentration at 21°C in mussels tissue may result from valves closure for longer periods, identified by reduced energy reserves consumption at higher temperature, which in turn might also contributed to higher oxidative stress in organisms exposed to this condition. The highest LPO levels observed in mussels exposed to higher temperatures alone indicate that warming conditions will greatly affect M. galloprovincialis. Furthermore, the present study showed that the impacts induced by the combination of Hg and warming were similar to the ones caused by increased temperature acting alone, mainly due to increased antioxidant defenses in organisms under combined effects of Hg and warming, suggesting that warming was the factor that mostly contributed to oxidative stress in mussels. Although higher mortality was observed in individuals exposed to 17°C and Hg compared to organisms exposed to Hg at 21°C, the oxidative stress induced at higher temperature may generate negative consequences on mussels reproductive and feeding capacity, growth and, consequently, on population maintenance and dynamics.
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Affiliation(s)
- Francesca Coppola
- Biology Department & CESAM, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Ângela Almeida
- Biology Department & CESAM, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Bruno Henriques
- Chemistry Department & CESAM, University of Aveiro, 3810-193 Aveiro, Portugal; CIIMAR, Interdisciplinary Centre of Marine and Environmental Research , Rua dos Bragas 289, 4050-123 Porto, Portugal
| | | | - Etelvina Figueira
- Biology Department & CESAM, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Eduarda Pereira
- Chemistry Department & CESAM, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Rosa Freitas
- Biology Department & CESAM, University of Aveiro, 3810-193 Aveiro, Portugal.
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