Emergence and predominance of an H5N1 influenza variant in China

The development of highly pathogenic avian H5N1 influenza viruses in poultry in Eurasia accompanied with the increase in human infection in 2006 suggests that the virus has not been effectively contained and that the pandemic threat persists. Updated virological and epidemiological findings from our market surveillance in southern China demonstrate that H5N1 influenza viruses continued to be panzootic in different types of poultry. Genetic and antigenic analyses revealed the emergence and predominance of a previously uncharacterized H5N1 virus sublineage (Fujian-like) in poultry since late 2005. Viruses from this sublineage gradually replaced those multiple regional distinct sublineages and caused recent human infection in China. These viruses have already transmitted to Hong Kong, Laos, Malaysia, and Thailand, resulting in a new transmission and outbreak wave in Southeast Asia. Serological studies suggest that H5N1 seroconversion in market poultry is low and that vaccination may have facilitated the selection of the Fujian-like sublineage. The predominance of this virus over a large geographical region within a short period directly challenges current disease control measures.

Evolution and adaptation of H5N1 influenza virus in avian and human hosts in Indonesia and Vietnam

Highly pathogenic avian influenza virus H5N1 is endemic in poultry in East and Southeast Asia with disease outbreaks recently spreading to parts of central Asia, Europe and Africa. Continued interspecies transmission to humans has been reported in Vietnam, Thailand, Cambodia, Indonesia and China, causing pandemic concern. Here, we genetically characterize 82 H5N1 viruses isolated from poultry throughout Indonesia and Vietnam and 11 human isolates from southern Vietnam together with sequence data available in public databases to address questions relevant to virus introduction, endemicity and evolution. Phylogenetic analysis shows that all viruses from Indonesia form a distinct sublineage of H5N1 genotype Z viruses suggesting this outbreak likely originated from a single introduction that spread throughout the country during the past two years. Continued virus activities in Indonesia were attributed to transmission via poultry movement within the country rather than through repeated introductions by bird migration. Within Indonesia and Vietnam, H5N1 viruses have evolved over time into geographically distinct groups within each country. Molecular analysis of the H5N1 genotype Z genome shows that only the M2 and PB1-F2 genes were under positive selection, suggesting that these genes might be involved in adaptation of this virus to new hosts following interspecies transmission. At the amino acid level 12 residues were under positive selection in those genotype Z viruses, in the HA and PB1-F2 proteins. Some of these residues were more frequently observed in human isolates than in avian isolates and are related to viral antigenicity and receptor binding. Our study provides insight into the ongoing evolution of H5N1 influenza viruses that are transmitting in diverse avian species and at the interface between avian and human hosts.

Establishment of multiple sublineages of H5N1 influenza virus in Asia: implications for pandemic control

Preparedness for a possible influenza pandemic caused by highly pathogenic avian influenza A subtype H5N1 has become a global priority. The spread of the virus to Europe and continued human infection in Southeast Asia have heightened pandemic concern. It remains unknown from where the pandemic strain may emerge; current attention is directed at Vietnam, Thailand, and, more recently, Indonesia and China. Here, we report that genetically and antigenically distinct sublineages of H5N1 virus have become established in poultry in different geographical regions of Southeast Asia, indicating the long-term endemicity of the virus, and the isolation of H5N1 virus from apparently healthy migratory birds in southern China. Our data show that H5N1 influenza virus, has continued to spread from its established source in southern China to other regions through transport of poultry and bird migration. The identification of regionally distinct sublineages contributes to the understanding of the mechanism for the perpetuation and spread of H5N1, providing information that is directly relevant to control of the source of infection in poultry. It points to the necessity of surveillance that is geographically broader than previously supposed and that includes H5N1 viruses of greater genetic and antigenic diversity.

Metabolic power, mechanical power and efficiency during wind tunnel flight by the European starlingSturnus vulgaris

We trained two starlings (Sturnus vulgaris) to fly in a wind tunnel whilst wearing respirometry masks. We measured the metabolic power (Pmet) from the rates of oxygen consumption and carbon dioxide production and calculated the mechanical power (Pmech) from two aerodynamic models using wingbeat kinematics measured by high-speed cinematography. Pmet increased from 10.4 to 14.9 W as flight speed was increased from 6.3 to 14.4 m s–1 and was compatible with the U-shaped power/speed curve predicted by the aerodynamic models. Flight muscle efficiency varied between 0.13 and 0.23 depending upon the bird, the flight speed and the aerodynamic model used to calculate Pmech. Pmet during flight is often estimated by extrapolation from the mechanical power predicted by aerodynamic models by dividing Pmech by a flight muscle efficiency of 0.23 and adding the costs of basal metabolism, circulation and respiration. This method would underestimate measured Pmet by 15–25 % in our birds. The mean discrepancy between measured and predicted Pmet could be reduced to 0.1±1.5 % if flight muscle efficiency was altered to a value of 0.18. A flight muscle efficiency of 0.18 rather than 0.23 should be used to calculate the flight costs of birds in the size range of starlings (approximately 0.1 kg) if Pmet is calculated from Pmech derived from aerodynamic models.

Lift generation by the avian tail

Variation with tail spread of the lift generated by a bird tail was measured on mounted, frozen European starlings (Sturnus vulgaris) in a wind tunnel at a typical air speed and body and tail angle of attack in order to test predictions of existing aerodynamic theories modelling tail lift. Measured lift at all but the lowest tail spread angles was significantly lower than the predictions of slender wing, leading edge vortex and lifting line models of lift production. Instead, the tail lift coefficient based on tail area was independent of tail spread, tail aspect ratio and maximum tail span. Theoretical models do not predict bird tail lift reliably and, when applied to tail morphology, may underestimate the aerodynamic optimum tail feather length. Flow visualization experiments reveal that an isolated tail generates leading edge vortices as expected for a low-aspect ratio delta wing, but that in the intact bird body-tail interactions are critical in determining tail aerodynamics: lifting vortices shed from the body interact with the tail and degrade tail lift compared with that of an isolated tail.

The avian tail reduces body parasite drag by controlling flow separation and vortex shedding

The aerodynamic effect of the furled avian tail on the parasite drag of a bird's body was investigated on mounted, frozen European starling Sturnus vulgaris in a wind tunnel at flight speeds between 6 and 14 m s(-1). Removal of tail rectrices and dorsal and ventral covert feathers at the base of the tail increased the total parasite drag of the body and tail by between 25 and 55%. Flow visualization and measurements of dynamic pressure in the tail boundary layer showed that in the intact bird a separation bubble forms on the ventral side of the body, and reattaches to the ventral side of the tail. This bubble is a consequence of the morphology of the body, with a rapid contraction posterior to the pelvis and hind legs. The tail and the covert feathers at its base act as a combined splitter plate and wedge to control vortex shedding and body wake development, and thereby are important to minimize drag. This hitherto unsuspected mechanism is central to understanding the morphology of the avian body, and may have had a significant influence on the evolution of avian tail morphology by pre-adapting the tail for radiation and specialization as an aerodynamic lifting structure and as an organ of communication in sexual selection.

Estimating power curves of flying vertebrates

The power required for flight in any flying animal is a function of flight speed. The power curve that describes this function has become an icon of studies of flight mechanics and physiology because it encapsulates the accessible animal's flight performance. The mechanical or aerodynamic power curve, describing the increase in kinetic energy of the air due to the passage of the bird, is necessarily U-shaped, for aerodynamic reasons, and can be estimated adequately by lifting-line theory. Predictions from this and related models agree well with measured mechanical work in flight and with results from flow visualization experiments. The total or metabolic power curve also includes energy released by the animal as heat, and is more variable in shape. These curves may be J-shaped for smaller birds and bats, but are difficult to predict theoretically owing to uncertainty about internal physiological processes and the efficiency of the flight muscles. The limitations of some existing models aiming to predict metabolic power curves are considered. The metabolic power curve can be measured for birds or bats flying in wind tunnels at controlled speeds. Simultaneous determination in European starlings Sturnus vulgaris of oxygen uptake, total metabolic rate (using labelled isotopes), aerodynamic power output and heat released (using digital video thermography) enable power curves to be determined with confidence; flight muscle efficiency is surprisingly low (averaging 15–18 %) and increases moderately with flight speed, so that the metabolic power curve is shallower than predicted by models. Accurate knowledge of the power curve is essential since extensive predictions of flight behaviour have been based upon it. The hypothesis that the power curve may not in fact exist, in the sense that the cost of flight may not be perceived by a bird as a continuous smooth function of air speed, is advanced but has not yet formally been tested. This hypothesis is considered together with evidence from variation in flight behaviour, wingbeat kinematics and flight gait with speed. Possible constraints on flight behaviour can be modelled by the power curves: these include the effect of a maximum power output and a constraint on maximum speed determined by downstroke wingbeat geometry and the relationship between thrust and lift.

Heat transfer from starlings sturnus vulgaris during flight

Infrared thermography was used to measure heat transfer by radiation and the surface temperature of starlings (Sturnus vulgaris) (N=4) flying in a wind tunnel at 6–14 m s-1 and at 15–25 degrees C. Heat transfer by forced convection was calculated from bird surface temperature and biophysical modelling of convective heat transfer coefficients. The legs, head and ventral brachial areas (under the wings) were the hottest parts of the bird (mean values 6.8, 6.0 and 5.3 degrees C, respectively, above air temperature). Thermal gradients between the bird surface and the air decreased at higher air temperatures or during slow flight. The legs were trailed in the air stream during slow flight and when air temperature was high; this could increase heat transfer from the legs from 1 to 12 % of heat transfer by convection, radiation and evaporation (overall heat loss). Overall heat loss at a flight speed of 10.2 m s-1 averaged 11. 3 W, of which radiation accounted for 8 % and convection for 81 %. Convection from the ventral brachial areas was the most important route of heat transfer (19 % of overall heat loss). Of the overall heat loss, 55 % occurred by convection and radiation from the wings, although the primaries and secondaries were the coolest parts of the bird (2.2-2.5 degrees C above air temperature). Calculated heat transfer from flying starlings was most sensitive to accurate measurement of air temperature and convective heat transfer coefficients.

Dynamics of the vortex wakes of flying and swimming vertebrates

The vortex wakes of flying and swimming animals provide evidence of the history of aero- and hydrodynamic force generation during the locomotor cycle. Vortex-induced momentum flux in the wake is the reaction of forces the animal imposes on its environment, which must be in equilibrium with inertial and external forces. In flying birds and bats, the flapping wings generate lift both to provide thrust and to support the weight. Distinct wingbeat and wake movement patterns can be identified as gaits. In flow visualization experiments, only two wake patterns have been identified: a vortex ring gait with inactive upstroke, and a continuous vortex gait with active upstroke. These gaits may be modelled theoretically by free vortex and lifting line theory to predict mechanical energy consumption, aerodynamic forces and muscle activity. Longer-winged birds undergo a distinct gait change with speed, but shorter-winged species use the vortex ring gait at all speeds. In swimming fish, the situation is more complex: the wake vortices form a reversed von Kármán vortex street, but little is known about the mechanism of generation of the wake, or about how it varies with speed and acceleration or with body form and swimming mode. An unresolved complicating factor is the interaction between the drag wake of the flapping fish body and the thrusting wake from the tail.

Avian flight energetics

Flight energy is an important factor in the lives of birds. Many strategies and adaptations serve to minimize energy cost and to allow a range of performance consistent with a bird's ecological needs. Theoretical methods can produce good estimates of flight energy that suggest why flight adaptations occur; but remarkably little is known of the physiological adaptations required by flight, or of how these change, a I believe they must, in relation to ecology and flight behavior. More data on the metabolic power consumption of birds in natural flight would be valuable, but it is more important to determine the changes in internal metabolic processes associated with different levels of flight activity. Muscle efficiency in flight, in particular, may have substantial implications for our understanding of the energetic performance of birds. This is but one of a variety of unknown quantities, and only when the mechanisms that determine these are more deeply investigated can flight adaptations be completely understood.

Aeromonas hydrophila septicaemia producing ecthyma gangrenosum in a child with leukaemia

A 4-year-old girl with leukaemia developed fever and ecthyma gangrenosum. Aeromonas hydrophila was isolated from blood and skin lesions. Ecthyma gangrenosum is often considered pathognomonic of Pseudomonas aeruginosa septicaemia. As is evident from the case reported, it may also result from infection with A. hydrophila, which has different antibiotic sensitivities, and which is now being recognised more frequently as a serious pathogen in immunosuppressed patients.