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Kim D, Lee J, Kim G, Ma J, Kim HM, Han JH, Jeong HH. Proton-Assisted Assembly of Colloidal Nanoparticles into Wafer-Scale Monolayers in Seconds. Adv Mater 2024; 36:e2313299. [PMID: 38267396 DOI: 10.1002/adma.202313299] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Revised: 01/21/2024] [Indexed: 01/26/2024]
Abstract
Underwater adhesion processes in nature promise controllable assembly of functional nanoparticles for industrial mass production; However, their artificial strategies have faced challenges to uniformly transfer nanoparticles into a monolayer, particularly those below 100 nm in size, over large areas. Here a scalable "one-shot" self-limiting nanoparticle transfer technique is presented, enabling the efficient transport of nanoparticles from water in microscopic volumes to an entire 2-inch wafer in a remarkably short time of 10 seconds to reach near-maximal surface coverage (≈40%) in a 2D mono-layered fashion. Employing proton engineering in electrostatic assembly accelerates the diffusion of nanoparticles (over 50 µm2/s), resulting in a hundredfold faster coating speed than the previously reported results in the literature. This charge-sensitive process further enables "pick-and-place" nanoparticle patterning at the wafer scale, with large flexibility in surface materials, including flexible metal oxides and 3D-printed polymers. As a result, the fabrication of wafer-scale disordered plasmonic metasurfaces in seconds is successfully demonstrated. These metasurfaces exhibit consistent resonating colors across diverse material and geometrical platforms, showcasing their potential for applications in full-color painting and optical encryption devices.
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Affiliation(s)
- Doeun Kim
- School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea
| | - JuHyeong Lee
- School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea
| | - Gyurin Kim
- School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea
| | - Jiyeong Ma
- School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea
| | - Hyun Min Kim
- School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea
| | - Jang-Hwan Han
- School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea
| | - Hyeon-Ho Jeong
- School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea
- Department of Semiconductor Engineering, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea
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2
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Kang D, Yang MJ, Kim H, Park C. Protective roles of highly conserved motif 1 in tardigrade cytosolic-abundant heat soluble protein in extreme environments. Protein Sci 2024; 33:e4913. [PMID: 38358259 PMCID: PMC10868442 DOI: 10.1002/pro.4913] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Revised: 01/09/2024] [Accepted: 01/16/2024] [Indexed: 02/16/2024]
Abstract
Tardigrades are remarkable microscopic animals that survive harsh conditions such as desiccation and extreme temperatures. Tardigrade-specific intrinsically disordered proteins (TDPs) play an essential role in the survival of tardigrades in extreme environments. Cytosolic-abundant heat soluble (CAHS) protein, a key TDP, is known to increase desiccation tolerance and to protect the activity of several enzymes under dehydrated conditions. However, the function and properties of each CAHS domain have not yet been elucidated in detail. Here, we aimed to elucidate the protective role of highly conserved motif 1 of CAHS in extreme environmental conditions. To examine CAHS domains, three protein constructs, CAHS Full (1-229), CAHS ∆Core (1-120_184-229), and CAHS Core (121-183), were engineered. The highly conserved CAHS motif 1 (124-142) in the CAHS Core formed an amphiphilic α helix, reducing the aggregate formation and protecting lactate dehydrogenase activity during dehydration-rehydration and freeze-thaw treatments, indicating that CAHS motif 1 in the CAHS Core was essential for maintaining protein solubility and stability. Aggregation assays and confocal microscopy revealed that the intrinsically disordered N- and C-terminal domains were more prone to aggregation under our experimental conditions. By explicating the functions of each domain in CAHS, our study proposes the possibility of using engineered proteins or peptides derived from CAHS as a potential candidate for biological applications in extreme environmental stress responses.
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Affiliation(s)
- Donguk Kang
- Department of ChemistryGwangju Institute of Science and TechnologyGwangjuRepublic of Korea
| | - Min June Yang
- Department of ChemistryGwangju Institute of Science and TechnologyGwangjuRepublic of Korea
| | - Hwan Kim
- GIST Advanced Institute of Instrumental Analysis (GAIA), Bio Imaging LaboratoryGwangju Institute of Science and TechnologyGwangjuRepublic of Korea
| | - Chin‐Ju Park
- Department of ChemistryGwangju Institute of Science and TechnologyGwangjuRepublic of Korea
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3
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Choi S, Hong SH, Han G, Cho C. Profiling of testis-specific or testis-predominant genes expressed in mouse male germ cell lines GC-1 and GC-2. Genes Genomics 2024; 46:279-287. [PMID: 38291311 DOI: 10.1007/s13258-023-01488-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2023] [Accepted: 12/20/2023] [Indexed: 02/01/2024]
Abstract
BACKGROUND Spermatogenesis is a tightly organized process that utilizes an intrinsic genetic program composed of germ cell-specific genes. Although mouse germ cell-related cell lines are available, few germ cell-specific genes have been comprehensively identified in such cell lines. OBJECTIVE We aimed to profile gene expression in the male mouse germ cell-related cell lines, GC-1 and GC-2, characterize their transcriptomic nature, and identify potential testis- or germ cell-specific or -predominant genes expressed in these cell lines. METHODS We performed profiling analysis of genes transcribed in the mouse germ cell-related cell lines, GC-1 and GC-2, using our previous microarray data together with public transcriptome information. We analyzed the expression of a number of the cell line genes predicted to be preferentially expressed in testis by RT-PCR. RESULTS We found that most testis-specific or -predominant mRNAs are not expressed in GC-1 and GC-2 cells, implying that these cell lines have lost their testis- or germ cell-specific genetic characteristics. RT-PCR analysis of genes predicted to be expressed in the cell lines with preferential testicular expression showed the testis-specific or -predominant expression of nine genes and verified four of them as being expressed in the germ cell lines. Among them, only cyclin-dependent kinase inhibitor 3 genes (Cdkn3) showed testis and germ cell specificity. CONCLUSION Our study provides extensive transcriptomic information to shed light on the limited testicular characteristics of the mouse male germ cell-derived cell lines, GC-1 and GC-2, and offers a list of germ cell line genes with testicular preference.
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Affiliation(s)
- Seungho Choi
- School of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, 61005, Korea
- R&D Center, KYNOGEN Corp, Suwon, Gyeonggi-do, Korea
| | - Seong Hyeon Hong
- School of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, 61005, Korea
- RNA Therapeutics Institute, University of Massachusetts Chan Medical School, Worcester, MA, USA
| | - Gwidong Han
- School of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, 61005, Korea
| | - Chunghee Cho
- School of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, 61005, Korea.
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4
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Kim D, Yun T, An S, Lee CL. How to improve the structural stabilities of halide perovskite quantum dots: review of various strategies to enhance the structural stabilities of halide perovskite quantum dots. Nano Converg 2024; 11:4. [PMID: 38279984 PMCID: PMC10821855 DOI: 10.1186/s40580-024-00412-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Accepted: 01/08/2024] [Indexed: 01/29/2024]
Abstract
Halide perovskites have emerged as promising materials for various optoelectronic devices because of their excellent optical and electrical properties. In particular, halide perovskite quantum dots (PQDs) have garnered considerable attention as emissive materials for light-emitting diodes (LEDs) because of their higher color purities and photoluminescence quantum yields compared to conventional inorganic quantum dots (CdSe, ZnSe, ZnS, etc.). However, PQDs exhibit poor structural stabilities in response to external stimuli (moisture, heat, etc.) owing to their inherent ionic nature. This review presents recent research trends and insights into improving the structural stabilities of PQDs. In addition, the origins of the poor structural stabilities of PQDs and various methods to overcome this drawback are discussed. The structural degradation of PQDs is mainly caused by two mechanisms: (1) defect formation on the surface of the PQDs by ligand dissociation (i.e., detachment of weakly bound ligands from the surface of PQDs), and (2) vacancy formation by halide migration in the lattices of the PQDs due to the low migration energy of halide ions. The structural stabilities of PQDs can be improved through four methods: (1) ligand modification, (2) core-shell structure, (3) crosslinking, and (4) metal doping, all of which are presented in detail herein. This review provides a comprehensive understanding of the structural stabilities and opto-electrical properties of PQDs and is expected to contribute to future research on improving the device performance of perovskite quantum dot LEDs (PeLEDs).
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Affiliation(s)
- Dokyum Kim
- Advanced Photonics Research Institute (APRI), Gwangju Institute of Science and Technology (GIST), Gwangju, 61005, Republic of Korea
| | - Taesun Yun
- Advanced Photonics Research Institute (APRI), Gwangju Institute of Science and Technology (GIST), Gwangju, 61005, Republic of Korea
- Department of Physics, Research Institute of Physics and Chemistry, Jeonbuk National University, Jeonju, 54896, Republic of Korea
| | - Sangmin An
- Department of Physics, Research Institute of Physics and Chemistry, Jeonbuk National University, Jeonju, 54896, Republic of Korea
| | - Chang-Lyoul Lee
- Advanced Photonics Research Institute (APRI), Gwangju Institute of Science and Technology (GIST), Gwangju, 61005, Republic of Korea.
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5
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Ham BS. Phase-controlled coherent photons for the quantum correlations in a delayed-choice quantum eraser scheme. Sci Rep 2024; 14:1752. [PMID: 38243015 PMCID: PMC10799079 DOI: 10.1038/s41598-024-52125-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Accepted: 01/14/2024] [Indexed: 01/21/2024] Open
Abstract
The delayed-choice quantum eraser has been intensively studied for the wave-particle duality of a single photon in an interferometric system over the last decades. Super-resolution has been studied over decades for quantum sensing to overcome the standard quantum limit. For the super-resolution, either quantum features of higher-order entangled photon pairs or classical features of phase-controlled coherent photons have been successfully demonstrated. Here, a method of classically excited super-resolution is presented for the phase-controlled coherent photons in a quarter-wave plate-modified quantum eraser scheme. To support the underlying physics of the super-resolution, nonlocal correlation is also presented with an additional frequency-polarization basis control via selective product-basis measurements.
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Affiliation(s)
- Byoung S Ham
- School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, 123 Chumdangwagi-ro, Buk-gu, Gwangju, 61005, South Korea.
- Qu-Lidar, 123 Chumdangwagi-ro, Buk-gu, Gwangju, 61005, South Korea.
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6
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Goh M, Min K, Kim YH, Tae G. Chemically heparinized PEEK via a green method to immobilize bone morphogenetic protein-2 (BMP-2) for enhanced osteogenic activity. RSC Adv 2024; 14:1866-1874. [PMID: 38192324 PMCID: PMC10772708 DOI: 10.1039/d3ra07660a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Accepted: 12/25/2023] [Indexed: 01/10/2024] Open
Abstract
Osseointegration remains one of the major challenges in the success of bone-related implants. Recently, polyetheretherketone (PEEK) has emerged as an alternative material in orthopedic and dental applications due to its bone-mimicking mechanical properties. However, its bioinertness resulting in poor osseointegration has limited its potential application. So, the surface modification of PEEK with bone morphogenetic protein-2 (BMP-2) can be a potential approach for improving osseointegration. In this study, we proposed the chemical modification of heparin onto PEEK through an environmentally benign method to exploit the BMP-2 binding affinity of heparin. The heparin was successfully functionalized on the PEEK surface via a combination of ozone and UV treatment without using organic solvents or chemicals. Furthermore, BMP-2 was efficiently immobilized on PEEK and exhibited a sustained release of BMP-2 compared to the pristine PEEK with enhancement of bioactivity in terms of proliferation as well as osteogenic differentiation of MG-63. The significant synergistic effect of BMP-2 and heparin grafting on osteogenic differentiation of MG-63 was observed. Overall, we demonstrated a relatively safe method where no harsh chemical reagent or organic solvent was involved in the process of heparin grafting onto PEEK. The BMP-2 loaded, heparin-grafted PEEK could serve as a potential platform for osseointegration improvement of PEEK-based bone implants.
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Affiliation(s)
- MeeiChyn Goh
- School of Materials Science and Engineering, Gwangju Institute of Science and Technology (GIST) Gwangju 61005 Republic of Korea
| | - Kiyoon Min
- School of Materials Science and Engineering, Gwangju Institute of Science and Technology (GIST) Gwangju 61005 Republic of Korea
| | - Young Ha Kim
- Korea Institute of Science and Technology Hwarang-ro 14-gil 5, Seongbuk-gu Seoul 02792 Republic of Korea
| | - Giyoong Tae
- School of Materials Science and Engineering, Gwangju Institute of Science and Technology (GIST) Gwangju 61005 Republic of Korea
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Oh MK, Kim H, Gupta P, Kim K. Ultrahighly Sensitive Surface-Enhanced Raman Spectroscopy Film of Silver Nanoparticles Dispersed in Three Dimensions on a Thin Alumina Nanowire Framework. Nanomaterials (Basel) 2023; 13:3169. [PMID: 38133065 PMCID: PMC10745398 DOI: 10.3390/nano13243169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 12/04/2023] [Accepted: 12/05/2023] [Indexed: 12/23/2023]
Abstract
To develop highly sensitive surface-enhanced Raman spectroscopy (SERS) films, various types of aggregated Ag nanowire (NW) and nanoparticle (NP) complex structures were fabricated using anodic aluminum oxide (AAO) templates and thermal evaporation. Aggregated AgNW structures with numerous tapered nanogaps were fabricated via Ag deposition on aggregated thin alumina nanowires of different lengths. AgNP complex structures were obtained by collapsing vertically aligned thin alumina nanowires 1 μm in length and depositing AgNPs on their tops and sides using surface tension during ethanol drying after functionalization. The Raman signal enhancement factors (EFs) of the samples were evaluated by comparing the SERS signal of the thiophenol (TP) self-assembled monolayer (SAM) on the nanostructures with the Raman signal of neat TP. EFs as high as ~2.3 × 107 were obtained for the optimized aggregated AgNW structure (NW length of 1 μm) and ~3.5 × 107 for the optimized AgNP complex structure. The large EF of the AgNP complex film is attributed mainly to the AgNPs dispersed in three dimensions on the sides of the thin alumina nanowires, strongly implying some important, relevant physics yet to be discovered and also a very promising nanostructure scheme for developing ultrahighly sensitive SERS films with EF > 108.
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Affiliation(s)
- Myoung-Kyu Oh
- Advanced Photonics Research Institute (APRI), Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Republic of Korea;
| | - Hyeonju Kim
- Advanced Photonics Research Institute (APRI), Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Republic of Korea;
| | - Prince Gupta
- Carnot de Bourgogne Interdisciplinary Laboratory (Laboratoire Interdisciplinaire Carnot de Bourgogne), CNRS UMR 6303, University of Burgundy Franche-Comté (Université de Bourgogne Franche-Comté), 21000 Dijon, France;
- School of Mechanical Engineering, Yonsei University, Seoul 03722, Republic of Korea
| | - Kyoungsik Kim
- School of Mechanical Engineering, Yonsei University, Seoul 03722, Republic of Korea
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8
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Ham JH, Park JS, Oh MK, Kim JH. Reusable Wrinkled Nanoporous Silver Film Fabricated by Plasma Treatment for Surface-Enhanced Raman Scattering Applications. ACS Omega 2023; 8:47146-47152. [PMID: 38107931 PMCID: PMC10720294 DOI: 10.1021/acsomega.3c07167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Revised: 11/09/2023] [Accepted: 11/22/2023] [Indexed: 12/19/2023]
Abstract
A nanoporous silver film (npAgF), a promising structure for surface-enhanced Raman spectroscopy (SERS), can be fabricated by using successive O2 and Ar plasma treatments on a planar silver film. The common dealloying method for producing an npAgF involves annealing at high temperatures to produce an alloy film, as well as harsh etching using corrosive chemicals. By contrast, the plasma-based method can be applied directly to various functional substrates to produce more sophisticated npAgF structures. Herein, we report a facile fabrication method for a wrinkled npAgF (w-npAgF) for SERS applications using a thermally contractible polystyrene substrate. The w-npAgF had 3D wrinkles of the nanoporous structure and showed approximately 8 times higher SERS enhancement than did the flat npAgF. Moreover, the w-npAgF could be reused for multiple SERS measurements of different molecules by mild O2 and Ar plasma treatments after each use, in which the O2 plasma effectively removed the adsorbed organic molecules and the Ar plasma reduced silver oxide to pristine silver for subsequent SERS measurements. The wrinkled nanoporous structure was maintained after multiple mild plasma treatments for reuse. The simplicity of plasma-based fabrication and high sensitivity of w-npAgFs are promising features for the green production of low-cost and reusable 3D SERS substrates.
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Affiliation(s)
- Jin-Hyun Ham
- Advanced Photonics Research Institute
(APRI), Gwangju Institute of Science and
Technology, Gwangju 61005, Republic
of Korea
| | - Jung Su Park
- Advanced Photonics Research Institute
(APRI), Gwangju Institute of Science and
Technology, Gwangju 61005, Republic
of Korea
| | - Myoung-Kyu Oh
- Advanced Photonics Research Institute
(APRI), Gwangju Institute of Science and
Technology, Gwangju 61005, Republic
of Korea
| | - Joon Heon Kim
- Advanced Photonics Research Institute
(APRI), Gwangju Institute of Science and
Technology, Gwangju 61005, Republic
of Korea
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9
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Lee Y, Yeo IS, Kim N, Lee DK, Kim KT, Yoon J, Yi J, Hong YB, Choi BO, Kosodo Y, Kim D, Park J, Song MR. Transcriptional control of motor pool formation and motor circuit connectivity by the LIM-HD protein Isl2. eLife 2023; 12:e84596. [PMID: 37869988 PMCID: PMC10637776 DOI: 10.7554/elife.84596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Accepted: 10/11/2023] [Indexed: 10/24/2023] Open
Abstract
The fidelity of motor control requires the precise positional arrangement of motor pools and the establishment of synaptic connections between them. During neural development in the spinal cord, motor nerves project to specific target muscles and receive proprioceptive input from these muscles via the sensorimotor circuit. LIM-homeodomain transcription factors are known to play a crucial role in successively restricting specific motor neuronal fates. However, their exact contribution to limb-based motor pools and locomotor circuits has not been fully understood. To address this, we conducted an investigation into the role of Isl2, a LIM-homeodomain transcription factor, in motor pool organization. We found that deletion of Isl2 led to the dispersion of motor pools, primarily affecting the median motor column (MMC) and lateral motor column (LMC) populations. Additionally, hindlimb motor pools lacked Etv4 expression, and we observed reduced terminal axon branching and disorganized neuromuscular junctions in Isl2-deficient mice. Furthermore, we performed transcriptomic analysis on the spinal cords of Isl2-deficient mice and identified a variety of downregulated genes associated with motor neuron (MN) differentiation, axon development, and synapse organization in hindlimb motor pools. As a consequence of these disruptions, sensorimotor connectivity and hindlimb locomotion were impaired in Isl2-deficient mice. Taken together, our findings highlight the critical role of Isl2 in organizing motor pool position and sensorimotor circuits in hindlimb motor pools. This research provides valuable insights into the molecular mechanisms governing motor control and its potential implications for understanding motor-related disorders in humans.
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Affiliation(s)
- Yunjeong Lee
- School of Life Sciences, Gwangju Institute of Science and Technology, Oryong-dong, Buk-guGwangjuRepublic of Korea
| | - In Seo Yeo
- School of Life Sciences, Gwangju Institute of Science and Technology, Oryong-dong, Buk-guGwangjuRepublic of Korea
| | - Namhee Kim
- Fermentation Regulation Technology Research Group, World Institute of KimchiGwangjuRepublic of Korea
| | - Dong-Keun Lee
- School of Life Sciences, Gwangju Institute of Science and Technology, Oryong-dong, Buk-guGwangjuRepublic of Korea
| | - Kyung-Tai Kim
- Jeonbuk Department of Inhalation Research, Korea Institute of ToxicologyJeongeup-siRepublic of Korea
| | - Jiyoung Yoon
- School of Life Sciences, Gwangju Institute of Science and Technology, Oryong-dong, Buk-guGwangjuRepublic of Korea
| | - Jawoon Yi
- School of Life Sciences, Gwangju Institute of Science and Technology, Oryong-dong, Buk-guGwangjuRepublic of Korea
| | - Young Bin Hong
- Department of Neurology, Samsung Medical Center, Sungkyunkwan University School of MedicineSeoulRepublic of Korea
- Department of Biochemistry, College of Medicine, Dong-A UniversityBusanRepublic of Korea
| | - Byung-Ok Choi
- Department of Neurology, Samsung Medical Center, Sungkyunkwan University School of MedicineSeoulRepublic of Korea
| | - Yoichi Kosodo
- Korea Brain Research InstituteDaeguRepublic of Korea
| | - Daesoo Kim
- Department of Brain and Cognitive Sciences, Korea Advanced Institute of Science and Technology (KAIST)DaejeonRepublic of Korea
| | - Jihwan Park
- School of Life Sciences, Gwangju Institute of Science and Technology, Oryong-dong, Buk-guGwangjuRepublic of Korea
| | - Mi-Ryoung Song
- School of Life Sciences, Gwangju Institute of Science and Technology, Oryong-dong, Buk-guGwangjuRepublic of Korea
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10
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Jang H, Song C, Kim B, Lee C, Lee J, Han Y, An I, Kim JH, Nam J, Choi MC. Regulation of Interfacial Anchoring Orientation of Anisotropic Nanodumbbells. ACS Macro Lett 2023; 12:1298-1305. [PMID: 37696008 PMCID: PMC10586460 DOI: 10.1021/acsmacrolett.3c00339] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Accepted: 08/09/2023] [Indexed: 09/13/2023]
Abstract
Nanoparticles exhibiting geometrical and chemical anisotropies hold promise for environmentally responsive materials with tunable mechanical properties. However, a comprehensive understanding of their interfacial behaviors remains elusive. In this paper, we control the interfacial anchoring orientation of polystyrene nanodumbbells by adjusting interparticle forces. The film nanostructure is characterized by the orientation angle analysis of individual dumbbells from cross-sectional EM data: dumbbells undergo orientation transitions from a distinctive horizontal bilayer to an isotropic anchoring when electrostatic repulsion is suppressed by either an ionic strength increase or surface amine-modification. This anchoring orientation influences the film's mechanical properties and foam stability, as investigated by a 2D isotherm and dark/bright-field microscopy measurements. Our findings highlight the potential for precise control of supra-colloidal structures by modulating particle alignment, paving the way for smart delivery systems.
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Affiliation(s)
- Hyunwoo Jang
- Department
of Bio and Brain Engineering, Korea Advanced
Institute of Science and Technology, Daejeon 34141, South Korea
| | | | - Byungsoo Kim
- Department
of Bio and Brain Engineering, Korea Advanced
Institute of Science and Technology, Daejeon 34141, South Korea
| | - Chunghyeong Lee
- Department
of Bio and Brain Engineering, Korea Advanced
Institute of Science and Technology, Daejeon 34141, South Korea
| | - Juncheol Lee
- Department
of Bio and Brain Engineering, Korea Advanced
Institute of Science and Technology, Daejeon 34141, South Korea
| | - Youngkyu Han
- AMOREPACIFIC
R&I Center, Yongin 17074, South Korea
| | - Ilsin An
- Department
of Photonics and Nanoelectronics, Hanyang
University, Ansan 15588, South Korea
| | - Joon Heon Kim
- Advanced
Photonics Research Institute, Gwangju Institute of Science and Technology, Gwangju 61005, South Korea
| | - Jin Nam
- AMOREPACIFIC
R&I Center, Yongin 17074, South Korea
| | - Myung Chul Choi
- Department
of Bio and Brain Engineering, Korea Advanced
Institute of Science and Technology, Daejeon 34141, South Korea
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11
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Jun K, Lee K, Lee S, Lee H, Kim MS. Hybrid Deep Neural Network Framework Combining Skeleton and Gait Features for Pathological Gait Recognition. Bioengineering (Basel) 2023; 10:1133. [PMID: 37892863 PMCID: PMC10604846 DOI: 10.3390/bioengineering10101133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 09/15/2023] [Accepted: 09/19/2023] [Indexed: 10/29/2023] Open
Abstract
Human skeleton data obtained using a depth camera have been used for pathological gait recognition to support doctor or physician diagnosis decisions. Most studies for skeleton-based pathological gait recognition have used either raw skeleton sequences directly or gait features, such as gait parameters and joint angles, extracted from raw skeleton sequences. We hypothesize that using skeleton, joint angles, and gait parameters together can improve recognition performance. This study aims to develop a deep neural network model that effectively combines different types of input data. We propose a hybrid deep neural network framework composed of a graph convolutional network, recurrent neural network, and artificial neural network to effectively encode skeleton sequences, joint angle sequences, and gait parameters, respectively. The features extracted from three different input data types are fused and fed into the final classification layer. We evaluate the proposed model on two different skeleton datasets (a simulated pathological gait dataset and a vestibular disorder gait dataset) that were collected using an Azure Kinect. The proposed model, with multiple types of input, improved the pathological gait recognition performance compared to single input models on both datasets. Furthermore, it achieved the best performance among the state-of-the-art models for skeleton-based action recognition.
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Affiliation(s)
- Kooksung Jun
- Robocare, Seongnam 13449, Republic of Korea;
- School of Integrated Technology, Gwangju Institute of Science and Technology, Gwangju 61005, Republic of Korea;
| | - Keunhan Lee
- Department of Otolaryngology-Head and Neck Surgery, Kosin University College of Medicine, Busan 49267, Republic of Korea;
| | - Sanghyub Lee
- School of Integrated Technology, Gwangju Institute of Science and Technology, Gwangju 61005, Republic of Korea;
| | - Hwanho Lee
- Department of Otolaryngology-Head and Neck Surgery, Kosin University College of Medicine, Busan 49267, Republic of Korea;
| | - Mun Sang Kim
- School of Integrated Technology, Gwangju Institute of Science and Technology, Gwangju 61005, Republic of Korea;
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12
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Park HJ, Lee B. Multiclass classification of imagined speech EEG using noise-assisted multivariate empirical mode decomposition and multireceptive field convolutional neural network. Front Hum Neurosci 2023; 17:1186594. [PMID: 37645689 PMCID: PMC10461632 DOI: 10.3389/fnhum.2023.1186594] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Accepted: 07/21/2023] [Indexed: 08/31/2023] Open
Abstract
Introduction In this study, we classified electroencephalography (EEG) data of imagined speech using signal decomposition and multireceptive convolutional neural network. The imagined speech EEG with five vowels /a/, /e/, /i/, /o/, and /u/, and mute (rest) sounds were obtained from ten study participants. Materials and methods First, two different signal decomposition methods were applied for comparison: noise-assisted multivariate empirical mode decomposition and wavelet packet decomposition. Six statistical features were calculated from the decomposed eight sub-frequency bands EEG. Next, all features obtained from each channel of the trial were vectorized and used as the input vector of classifiers. Lastly, EEG was classified using multireceptive field convolutional neural network and several other classifiers for comparison. Results We achieved an average classification rate of 73.09 and up to 80.41% in a multiclass (six classes) setup (Chance: 16.67%). In comparison with various other classifiers, significant improvements for other classifiers were achieved (p-value < 0.05). From the frequency sub-band analysis, high-frequency band regions and the lowest-frequency band region contain more information about imagined vowel EEG data. The misclassification and classification rate of each vowel imaginary EEG was analyzed through a confusion matrix. Discussion Imagined speech EEG can be classified successfully using the proposed signal decomposition method and a convolutional neural network. The proposed classification method for imagined speech EEG can contribute to developing a practical imagined speech-based brain-computer interfaces system.
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Affiliation(s)
- Hyeong-jun Park
- Department of Biomedical Science and Engineering, Gwangju Institute of Science and Technology, Gwangju, Republic of Korea
| | - Boreom Lee
- Department of Biomedical Science and Engineering, Gwangju Institute of Science and Technology, Gwangju, Republic of Korea
- AI Graduate School, Gwangju Institute of Science and Technology, Gwangju, Republic of Korea
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13
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Jun J, Kim HK. Informer-Based Temperature Prediction Using Observed and Numerical Weather Prediction Data. Sensors (Basel) 2023; 23:7047. [PMID: 37631584 PMCID: PMC10459812 DOI: 10.3390/s23167047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2023] [Revised: 08/04/2023] [Accepted: 08/07/2023] [Indexed: 08/27/2023]
Abstract
This paper proposes an Informer-based temperature prediction model to leverage data from an automatic weather station (AWS) and a local data assimilation and prediction system (LDAPS), where the Informer as a variant of a Transformer was developed to better deal with time series data. Recently, deep-learning-based temperature prediction models have been proposed, demonstrating successful performances, such as conventional neural network (CNN)-based models, bi-directional long short-term memory (BLSTM)-based models, and a combination of both neural networks, CNN-BLSTM. However, these models have encountered issues due to the lack of time data integration during the training phase, which also lead to the persistence of a long-term dependency problem in the LSTM models. These limitations have culminated in a performance deterioration when the prediction time length was extended. To overcome these issues, the proposed model first incorporates time-periodic information into the learning process by generating time-periodic information and inputting it into the model. Second, the proposed model replaces the LSTM with an Informer as an alternative to mitigating the long-term dependency problem. Third, a series of fusion operations between AWS and LDAPS data are executed to examine the effect of each dataset on the temperature prediction performance. The performance of the proposed temperature prediction model is evaluated via objective measures, including the root-mean-square error (RMSE) and mean absolute error (MAE) over different timeframes, ranging from 6 to 336 h. The experiments showed that the proposed model relatively reduced the average RMSE and MAE by 0.25 °C and 0.203 °C, respectively, compared with the results of the CNN-BLSTM-based model.
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Affiliation(s)
- Jimin Jun
- School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, Gwangju 61005, Republic of Korea;
| | - Hong Kook Kim
- School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, Gwangju 61005, Republic of Korea;
- AI Graduate School, Gwangju Institute of Science and Technology, Gwangju 61005, Republic of Korea
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14
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Abstract
Quantum entanglement generation is generally known to be impossible by any classical means. According to Poisson statistics, coherent photons are not considered quantum particles due to the bunching phenomenon. Recently, a coherence approach has been applied for quantum correlations such as the Hong-Ou-Mandel (HOM) effect, Franson-type nonlocal correlation, and delayed-choice quantum eraser to understand the mysterious quantum features. In the coherence approach, the quantum correlation has been now understood as a direct result of selective measurements between product bases of phase-coherent photons. Especially in the HOM interpretation, it has been understood that a fixed sum-phase relation between paired photons is the bedrock of quantum entanglement. Here, a coherently excited HOM model is proposed, analyzed, and discussed for the fundamental physics of two-photon correlation using linear optics-based polarization-basis control. For this, polarization-frequency correlation in a Mach-Zehnder interferometer is coherently excited using synchronized acousto-optic modulators, where polarization-basis control is conducted via a selective measurement process of the heterodyne signals. Like quantum operator-based destructive interference in the HOM theory, a perfectly coherent analysis shows the same HOM effects of the paired coherent photons on a beam splitter, whereas individual output intensities are uniform.
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Affiliation(s)
- Byoung S Ham
- School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, 123 Chumdangwagi-ro, Buk-gu, Gwangju, 61005, South Korea.
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15
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Abstract
Quantum superposition is the cornerstone of quantum mechanics, where interference fringes originate in the self-interference of a single photon via indistinguishable photon characteristics. Wheeler's delayed-choice experiments have been extensively studied for the wave-particle duality over the last several decades to understand the complementarity theory of quantum mechanics. The heart of the delayed-choice quantum eraser is in the mutually exclusive quantum feature violating the cause-effect relation. Here, we experimentally demonstrate the quantum eraser using coherent photon pairs by the delayed choice of a polarizer placed out of the interferometer. Coherence solutions of the observed quantum eraser are derived from a typical Mach-Zehnder interferometer, where the violation of the cause-effect relation is due to selective measurements of basis choice.
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Affiliation(s)
- Sangbae Kim
- Center for Photon Information Processing, and School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, 123 Chumdangwagi-ro, Buk-gu, Gwangju, 61005, South Korea
| | - Byoung S Ham
- Center for Photon Information Processing, and School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, 123 Chumdangwagi-ro, Buk-gu, Gwangju, 61005, South Korea.
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16
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Razak MR, Aris AZ, Yusoff FM, Yusof ZNB, Abidin AAZ, Kim SD, Kim KW. Risk assessment of bisphenol analogues towards mortality, heart rate and stress-mediated gene expression in cladocerans Moina micrura. Environ Geochem Health 2023; 45:3567-3583. [PMID: 36450975 DOI: 10.1007/s10653-022-01442-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Accepted: 11/22/2022] [Indexed: 06/01/2023]
Abstract
Bisphenol A (BPA) is a well-known endocrine-disrupting compound that causes several toxic effects on human and aquatic organisms. The restriction of BPA in several applications has increased the substituted toxic chemicals such as bisphenol F (BPF) and bisphenol S (BPS). A native tropical freshwater cladoceran, Moina micrura, was used as a bioindicator to assess the adverse effects of bisphenol analogues at molecular, organ, individual and population levels. Bisphenol analogues significantly upregulated the expressions of stress-related genes, which are the haemoglobin and glutathione S-transferase genes, but the sex determination genes such as doublesex and juvenile hormone analogue genes were not significantly different. The results show that bisphenol analogues affect the heart rate and mortality rate of M. micrura. The 48-h lethal concentration (LC50) values based on acute toxicity for BPA, BPF and BPS were 611.6 µg L-1, 632.0 µg L-1 and 819.1 µg L-1, respectively. The order of toxicity based on the LC50 and predictive non-effect concentration values were as follows: BPA > BPF > BPS. Furthermore, the incorporated method combining the responses throughout the organisation levels can comprehensively interpret the toxic effects of bisphenol analogues, thus providing further understanding of the toxicity mechanisms. Moreover, the output of this study produces a comprehensive ecotoxicity assessment, which provides insights for the legislators regarding exposure management and mitigation of bisphenol analogues in riverine ecosystems.
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Affiliation(s)
- Muhammad Raznisyafiq Razak
- Department of Environment, Faculty of Forestry and Environment, Universiti Putra Malaysia (UPM), 43400, Serdang, Selangor, Malaysia
| | - Ahmad Zaharin Aris
- Department of Environment, Faculty of Forestry and Environment, Universiti Putra Malaysia (UPM), 43400, Serdang, Selangor, Malaysia.
- International Institute of Aquaculture and Aquatic Sciences, Universiti Putra Malaysia, 71050, Port Dickson, Negeri Sembilan, Malaysia.
| | - Fatimah Md Yusoff
- International Institute of Aquaculture and Aquatic Sciences, Universiti Putra Malaysia, 71050, Port Dickson, Negeri Sembilan, Malaysia
- Department of Aquaculture, Faculty of Agriculture, Universiti Putra Malaysia (UPM), 43400, Serdang, Selangor, Malaysia
| | - Zetty Norhana Balia Yusof
- Department of Biochemistry, Faculty of Biotechnology and Biomolecular Science, Universiti Putra Malaysia (UPM), 43400, Serdang, Selangor, Malaysia
- Institute of Bioscience, Universiti Putra Malaysia (UPM), 43400, Serdang, Selangor, Malaysia
| | - Aisamuddin Ardi Zainal Abidin
- Department of Biochemistry, Faculty of Biotechnology and Biomolecular Science, Universiti Putra Malaysia (UPM), 43400, Serdang, Selangor, Malaysia
| | - Sang Don Kim
- School of Earth Sciences and Environmental Engineering, Gwangju Institute of Science and Technology, 123 Cheomdangwagi-ro, Buk-gu, Gwangju, 61005, Republic of Korea
| | - Kyoung Woong Kim
- School of Earth Sciences and Environmental Engineering, Gwangju Institute of Science and Technology, 123 Cheomdangwagi-ro, Buk-gu, Gwangju, 61005, Republic of Korea
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17
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Razak MR, Aris AZ, Yusoff FM, Yusof ZNB, Kim SD, Kim KW. De Novo Transcriptomic and Life-History Responses of Moina Micrura Under Stress Environment Conditions. Mar Biotechnol (NY) 2023; 25:473-487. [PMID: 37310522 DOI: 10.1007/s10126-023-10220-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Accepted: 06/02/2023] [Indexed: 06/14/2023]
Abstract
Moina micrura represents a promising model species for ecological and ecotoxicological investigations in tropical freshwater ecosystems. Illumina NovaSeq™ 6000 sequencing was employed in this study to analyze M. micrura across three distinct developmental stages: juvenile, adult, and male. Current study successfully annotated 51,547 unigenes (73.11%) derived from seven (7) different databases. A total of 554 genes were found to be significantly upregulated, while 452 genes showed significant downregulation between juvenile and male. Moreover, 1001 genes were upregulated, whereas 830 genes exhibited downregulation between the adult and male. Analysis of differentially expressed genes revealed upregulation of chitin, cuticle, myosin (MYO), mitogen-activated protein kinases (MAPK), fibrillin (FBN), cytochrome (CYP), glutathione s-transferase (GST), vitellogenin (VTG), acetylcholinesterase (AChE), and transforming growth factor beta (TGFB) under unfavorable environmental conditions (male), as compared to favorable environmental conditions (juveniles and adults). These alterations in gene expression significantly impact the phenological and life-history traits of M. micrura. Furthermore, the upregulation of hemoglobin (HMB), doublesex (DSX), juvenile hormone analogs (JHA), heat shock protein (HSP), and methyltransferase (METT) genes in males initiates the sex-switching effects observed in M. micrura. These findings hold substantial value for researchers interested in determining M. micrura sequences for future investigations of gene expression and comparative reproductive genome analysis within the Moina genus and cladoceran families.
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Affiliation(s)
- Muhammad Raznisyafiq Razak
- Department of Environment, Faculty of Forestry and Environment, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia
| | - Ahmad Zaharin Aris
- Department of Environment, Faculty of Forestry and Environment, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia.
- International Institute of Aquaculture and Aquatic Sciences, Universiti Putra Malaysia, Negeri Sembilan, 71050, Port Dickson, Malaysia.
| | - Fatimah Md Yusoff
- International Institute of Aquaculture and Aquatic Sciences, Universiti Putra Malaysia, Negeri Sembilan, 71050, Port Dickson, Malaysia
- Department of Aquaculture, Faculty of Agriculture, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia
| | - Zetty Norhana Balia Yusof
- Department of Biochemistry, Faculty of Biotechnology and Biomolecular Science, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
- Institute of Bioscience, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia
| | - Sang Don Kim
- School of Earth Sciences and Environmental Engineering, Gwangju Institute of Science and Technology, 123 Cheomdangwagi-Ro, Buk-Gu, Gwangju, 61005, Republic of Korea
| | - Kyoung Woong Kim
- School of Earth Sciences and Environmental Engineering, Gwangju Institute of Science and Technology, 123 Cheomdangwagi-Ro, Buk-Gu, Gwangju, 61005, Republic of Korea
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18
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Hussain M, Rafique MA, Jung WG, Kim BJ, Jeon M. Segmentation and Morphology Computation of a Spiky Nanoparticle Using the Hourglass Neural Network. ACS Omega 2023; 8:17834-17840. [PMID: 37251121 PMCID: PMC10210197 DOI: 10.1021/acsomega.3c00783] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Accepted: 04/28/2023] [Indexed: 05/31/2023]
Abstract
Morphological measurements of nanoparticles in electron microscopy images are tedious, laborious, and often succumb to human errors. Deep learning methods in artificial intelligence (AI) paved the way for automated image understanding. This work proposes a deep neural network (DNN) for the automated segmentation of a Au spiky nanoparticle (SNP) in electron microscopic images, and the network is trained with a spike-focused loss function. The segmented images are used for the growth measurement of the Au SNP. The auxiliary loss function captures the spikes of the nanoparticle, which prioritizes the detection of spikes in the border regions. The growth of the particles measured by the proposed DNN is as good as the measurement in manually segmented images of the particles. The proposed DNN composition with the training methodology meticulously segments the particle and consequently provides accurate morphological analysis. Furthermore, the proposed network is tested on an embedded system for integration with the microscope hardware for real-time morphological analysis.
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Affiliation(s)
- Muhammad
Ishfaq Hussain
- School
of Electrical Engineering and Computer Sciences, Gwangju Institute of Science and Technology, Gwangju 500-712, Republic of Korea
| | - Muhammad Aasim Rafique
- Department
of Information Systems, College of Computer Sciences and Information
Technology, King Faisal University, Al Ahsa 31982, Saudi Arabia
| | - Wan-Gil Jung
- Korea
Basic Science Institute, Gwangju Center, Gwangju 61186, Republic of Korea
| | - Bong-Joong Kim
- School
of Materials Science and Engineering, Gwangju
Institute of Science and Technology, Gwangju 500-712, Republic of Korea
| | - Moongu Jeon
- School
of Electrical Engineering and Computer Sciences, Gwangju Institute of Science and Technology, Gwangju 500-712, Republic of Korea
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19
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Han WB, Heo SY, Kim D, Yang SM, Ko GJ, Lee GJ, Kim DJ, Rajaram K, Lee JH, Shin JW, Jang TM, Han S, Kang H, Lim JH, Kim DH, Kim SH, Song YM, Hwang SW. Zebra-inspired stretchable, biodegradable radiation modulator for all-day sustainable energy harvesters. Sci Adv 2023; 9:eadf5883. [PMID: 36724224 PMCID: PMC9891689 DOI: 10.1126/sciadv.adf5883] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/01/2022] [Accepted: 01/05/2023] [Indexed: 06/18/2023]
Abstract
Recent advances in passive radiative cooling systems describe a variety of strategies to enhance cooling efficiency, while the integration of such technology with a bioinspired design using biodegradable materials can offer a research opportunity to generate energy in a sustainable manner, favorable for the temperature/climate system of the planet. Here, we introduce stretchable and ecoresorbable radiative cooling/heating systems engineered with zebra stripe-like patterns that enable the generation of a large in-plane temperature gradient for thermoelectric generation. A comprehensive study of materials with theoretical evaluations validates the ability to accomplish the target performances even under external mechanical strains, while all systems eventually disappear under physiological conditions. Use of the zebra print for selective radiative heating demonstrates an unexpected level of temperature difference compared to use of radiative cooling emitters alone, which enables producing energy through resorbable silicon-based thermoelectric devices. The overall result suggests the potential of scalable, ecofriendly renewable energy systems.
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Affiliation(s)
- Won Bae Han
- KU-KIST Graduate School of Converging Science and Technology, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, Republic of Korea
| | - Se-Yeon Heo
- School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology (GIST), 123 Cheomdangwagi-ro, Buk-gu, Gwangju 61005, Republic of Korea
| | - Donghak Kim
- KU-KIST Graduate School of Converging Science and Technology, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, Republic of Korea
- Center for Biomaterials, Biomedical Research Institute, Korea Institute of Science and Technology (KIST), 5 Hwarang-ro 14-gil, Seongbuk-gu, Seoul 02792, Republic of Korea
| | - Seung Min Yang
- KU-KIST Graduate School of Converging Science and Technology, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, Republic of Korea
| | - Gwan-Jin Ko
- KU-KIST Graduate School of Converging Science and Technology, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, Republic of Korea
| | - Gil Ju Lee
- Department of Electronics Engineering, Pusan National University, 2 Busandaehak-ro, Geumjeong-gu, Busan 46241, Republic of Korea
| | - Dong-Je Kim
- KU-KIST Graduate School of Converging Science and Technology, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, Republic of Korea
| | - Kaveti Rajaram
- KU-KIST Graduate School of Converging Science and Technology, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, Republic of Korea
| | - Joong Hoon Lee
- KU-KIST Graduate School of Converging Science and Technology, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, Republic of Korea
| | - Jeong-Woong Shin
- KU-KIST Graduate School of Converging Science and Technology, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, Republic of Korea
| | - Tae-Min Jang
- KU-KIST Graduate School of Converging Science and Technology, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, Republic of Korea
| | - Sungkeun Han
- KU-KIST Graduate School of Converging Science and Technology, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, Republic of Korea
| | - Heeseok Kang
- KU-KIST Graduate School of Converging Science and Technology, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, Republic of Korea
| | - Jun Hyeon Lim
- KU-KIST Graduate School of Converging Science and Technology, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, Republic of Korea
| | - Do Hyeon Kim
- School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology (GIST), 123 Cheomdangwagi-ro, Buk-gu, Gwangju 61005, Republic of Korea
| | - Soo Hyun Kim
- KU-KIST Graduate School of Converging Science and Technology, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, Republic of Korea
- Center for Biomaterials, Biomedical Research Institute, Korea Institute of Science and Technology (KIST), 5 Hwarang-ro 14-gil, Seongbuk-gu, Seoul 02792, Republic of Korea
| | - Young Min Song
- School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology (GIST), 123 Cheomdangwagi-ro, Buk-gu, Gwangju 61005, Republic of Korea
- Artificial Intelligence (AI) Graduate School, Gwangju Institute of Science and Technology (GIST), 123 Cheomdangwagi-ro, Buk-gu, Gwangju 61005, Republic of Korea
| | - Suk-Won Hwang
- KU-KIST Graduate School of Converging Science and Technology, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, Republic of Korea
- Center for Biomaterials, Biomedical Research Institute, Korea Institute of Science and Technology (KIST), 5 Hwarang-ro 14-gil, Seongbuk-gu, Seoul 02792, Republic of Korea
- Department of Integrative Energy Engineering, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, Republic of Korea
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Kim HR, Park JS, Soh WC, Kim NY, Moon HY, Lee JS, Jun CD. T Cell Microvilli: Finger-Shaped External Structures Linked to the Fate of T Cells. Immune Netw 2023; 23:e3. [PMID: 36911802 PMCID: PMC9995986 DOI: 10.4110/in.2023.23.e3] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2022] [Revised: 02/11/2023] [Accepted: 02/11/2023] [Indexed: 03/07/2023] Open
Abstract
Microvilli are outer membrane organelles that contain cross-linked filamentous actin. Unlike well-characterized epithelial microvilli, T-cell microvilli are dynamic similar to those of filopodia, which grow and shrink intermittently via the alternate actin-assembly and -disassembly. T-cell microvilli are specialized for sensing Ags on the surface of Ag-presenting cells (APCs). Thus, these finger-shaped microprotrusions contain many signaling-related proteins and can serve as a signaling platforms that induce intracellular signals. However, they are not limited to sensing external information but can provide sites for parts of the cell-body to tear away from the cell. Cells are known to produce many types of extracellular vesicles (EVs), such as exosomes, microvesicles, and membrane particles. T cells also produce EVs, but little is known about under what conditions T cells generate EVs and which types of EVs are released. We discovered that T cells produce few exosomes but release large amounsts of microvilli-derived particles during physical interaction with APCs. Although much is unanswered as to why T cells use the same organelles to sense Ags or to produce EVs, these events can significantly affect T cell fate, including clonal expansion and death. Since TCRs are localized at microvilli tips, this membrane event also raises a new question regarding long-standing paradigm in T cell biology; i.e., surface TCR downmodulation following T cell activation. Since T-cell microvilli particles carry T-cell message to their cognate partner, these particles are termed T-cell immunological synaptosomes (TISs). We discuss the potential physiological role of TISs and their application to immunotherapies.
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Affiliation(s)
- Hye-Ran Kim
- School of Life Sciences, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea
- Immune Synapse and Cell Therapy Research Center, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea
- Division of Rare and Refractory Cancer, Tumor Immunology, Research Institute, National Cancer Center, Goyang 10408, Korea
| | - Jeong-Su Park
- School of Life Sciences, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea
- Immune Synapse and Cell Therapy Research Center, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea
| | - Won-Chang Soh
- School of Life Sciences, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea
- Immune Synapse and Cell Therapy Research Center, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea
| | - Na-Young Kim
- School of Life Sciences, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea
- Immune Synapse and Cell Therapy Research Center, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea
| | - Hyun-Yoong Moon
- School of Life Sciences, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea
- Immune Synapse and Cell Therapy Research Center, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea
| | - Ji-Su Lee
- School of Life Sciences, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea
- Immune Synapse and Cell Therapy Research Center, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea
| | - Chang-Duk Jun
- School of Life Sciences, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea
- Immune Synapse and Cell Therapy Research Center, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea
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Jeon N, Jeong IH, Cho E, Choi I, Lee J, Han EH, Lee HJ, Lee PC, Lee E. Microcurvature Controllable Metal-Organic Framework Nanoagents Capable of Ice-Lattice Matching for Cellular Cryopreservation. JACS Au 2023; 3:154-164. [PMID: 36711099 PMCID: PMC9875254 DOI: 10.1021/jacsau.2c00562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Revised: 12/06/2022] [Accepted: 12/07/2022] [Indexed: 06/18/2023]
Abstract
Ice-binding proteins (IBPs) produced by psychrophilic organisms to adapt for the survival of psychrophiles in subzero conditions have received illustrious interest as a cryopreservation agent required for cells and tissues to completely recover after freezing/thawing. Depressing water-freezing point and avoiding ice-crystal growth affect their activities which are closely related to the presence of ice crystal well-matched binding moiety. The interaction of IBPs with ice and water is critical in enhancing their freeze avoidance against cell or tissue damage. Metal-organic frameworks (MOFs) with a controllable lattice at the molecular level and a size at the nanometer scale can offer periodically ordered ice-binding sites by modifying organic linkers and controlling microcurvature at the ice surface. Herein, zirconium (Zr)-based MOF-801 nanoparticles (NPs) with good biocompatibility were used as a cryoprotectant that is well dispersed and colloidal-stable in an aqueous solution. The MOF NP size was precisely controlled, and 10, 35, 100, and 250 nm NPs were prepared. The specific IBPs-mimicking pendants (valine and threonine) were simply introduced into the MOF NP-surface through the acrylate-based functionalization to endow with hydrophilic and hydrophobic dualities. When small-sized MOF-801 NPs were attached to ice, they confined ice growth in high curvature between the adsorption sites because of the decreased radius of the convex area of the growth region, leading to highly enhanced ice recrystallization inhibition (IRI). Surface-functionalized MOF NPs could increase the number of anchored clathrate water molecules with hydrophilic/hydrophobic balance of the ice-binding moiety, effectively inhibiting ice growth. The MOF-801 NPs were biocompatible with various cell lines regardless of concentration or NP surface-functionalization, whereas the smaller-sized surface-functionalized NPs showed a good cell recovery rate after freezing/thawing by induction of IRI. This study provides a strategy for the fabrication of low-cost, high-volume antifreeze nanoagents that can extend useful applications to organ transplantation, cord blood storage, and vaccines/drugs.
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Affiliation(s)
- Nayeong Jeon
- School
of Materials Science and Engineering, Gwangju
Institute of Science and Technology (GIST), Gwangju61005, Republic of Korea
| | - In-ho Jeong
- Department
of Biomedical Sciences, Asan Medical Center, University of Ulsan College of Medicine, Seoul05505, Republic
of Korea
| | - Eunyeong Cho
- Composites
Research Division, Korea Institute of Materials
Science (KIMS), Changwon51508, Republic of Korea
| | - Ilhyung Choi
- School
of Materials Science and Engineering, Gwangju
Institute of Science and Technology (GIST), Gwangju61005, Republic of Korea
| | - Jiyeon Lee
- School
of Materials Science and Engineering, Gwangju
Institute of Science and Technology (GIST), Gwangju61005, Republic of Korea
| | - Eun Hee Han
- Research
Center for Bioconvergence Analysis, Korea
Basic Science Institute (KBSI), Cheongju28119, Republic of Korea
| | - Hee Jung Lee
- Composites
Research Division, Korea Institute of Materials
Science (KIMS), Changwon51508, Republic of Korea
| | - Peter C.W. Lee
- Department
of Biomedical Sciences, Asan Medical Center, University of Ulsan College of Medicine, Seoul05505, Republic
of Korea
| | - Eunji Lee
- School
of Materials Science and Engineering, Gwangju
Institute of Science and Technology (GIST), Gwangju61005, Republic of Korea
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22
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Kim S, Ham BS. Revisiting self-interference in Young's double-slit experiments. Sci Rep 2023; 13:977. [PMID: 36653439 PMCID: PMC9849424 DOI: 10.1038/s41598-023-28264-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Accepted: 01/16/2023] [Indexed: 01/19/2023] Open
Abstract
Quantum superposition is the heart of quantum mechanics as mentioned by Dirac and Feynman. In an interferometric system, single photon self-interference has been intensively studied over the last several decades in both quantum and classical regimes. In Born rule tests, the Sorkin parameter indicates the maximum number of possible quantum superposition allowed to the input photons entering an interferometer, where multi-photon interference fringe is equivalent to that of a classical version by a laser. Here, an attenuated laser light in a quantum regime is investigated for self-interference in a Mach-Zehnder interferometer, and the results are compared with its classical version. The equivalent result supports the Born rule tests, where the classical interference originates in the superposition of individual single-photon self-interferences. This understanding sheds light on the fundamental physics of quantum features between bipartite systems.
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Affiliation(s)
- Sangbae Kim
- School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, 123 Chumdangwagi-Ro, Buk-Gu, Gwangju, 61005, South Korea
| | - Byoung S Ham
- School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, 123 Chumdangwagi-Ro, Buk-Gu, Gwangju, 61005, South Korea.
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23
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Seong M, Oh Y, Park HJ, Choi WS, Kim JG. Use of Hypoxic Respiratory Challenge for Differentiating Alzheimer's Disease and Wild-Type Mice Non-Invasively: A Diffuse Optical Spectroscopy Study. Biosensors (Basel) 2022; 12:1019. [PMID: 36421136 PMCID: PMC9688818 DOI: 10.3390/bios12111019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/03/2022] [Revised: 11/12/2022] [Accepted: 11/13/2022] [Indexed: 06/16/2023]
Abstract
Alzheimer's disease is one of the most critical brain diseases. The prevalence of the disease keeps rising due to increasing life spans. This study aims to examine the use of hemodynamic signals during hypoxic respiratory challenge for the differentiation of Alzheimer's disease (AD) and wild-type (WT) mice. Diffuse optical spectroscopy, an optical system that can non-invasively monitor transient changes in deoxygenated (ΔRHb) and oxygenated (ΔOHb) hemoglobin concentrations, was used to monitor hemodynamic reactivity during hypoxic respiratory challenges in an animal model. From the acquired signals, 13 hemodynamic features were extracted from each of ΔRHb and -ΔOHb (26 features total) for more in-depth analyses of the differences between AD and WT. The hemodynamic features were statistically analyzed and tested to explore the possibility of using machine learning (ML) to differentiate AD and WT. Among the twenty-six features, two features of ΔRHb and one feature of -ΔOHb showed statistically significant differences between AD and WT. Among ML techniques, a naive Bayes algorithm achieved the best accuracy of 84.3% when whole hemodynamic features were used for differentiation. While further works are required to improve the approach, the suggested approach has the potential to be an alternative method for the differentiation of AD and WT.
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Affiliation(s)
- Myeongsu Seong
- School of Information Science and Technology, Nantong University, Nantong 226019, China
- Research Center for Intelligent Information Technology, Nantong University, Nantong 226019, China
| | - Yoonho Oh
- Department of Biomedical Science and Engineering, Gwangju Institute of Science and Technology, Gwangju 61005, Republic of Korea
| | - Hyung Joon Park
- School of Biological Sciences and Technology, College of Natural Sciences, College of Medicine, Chonnam National University, Gwangju 61186, Republic of Korea
- Department of Biochemistry, University of Washington, Seattle, WA 98195, USA
| | - Won-Seok Choi
- School of Biological Sciences and Technology, College of Natural Sciences, College of Medicine, Chonnam National University, Gwangju 61186, Republic of Korea
| | - Jae Gwan Kim
- Department of Biomedical Science and Engineering, Gwangju Institute of Science and Technology, Gwangju 61005, Republic of Korea
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24
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Jagals P, Kim I, Brereton C, Lau CL. Assessment of Environmental Impacts on Health: Examples from the Pacific Basin. Ann Glob Health 2022; 88:92. [PMID: 36348704 PMCID: PMC9585977 DOI: 10.5334/aogh.3671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Accepted: 04/17/2022] [Indexed: 11/20/2022] Open
Abstract
Assessing environmental impacts on health in the Pacific Basin is challenged by significantly varying data types - quantities, qualities, and paucities - because of varying geographic sizes, environments, biodiversity, ecological assets, and human population densities, with highly varied and unequal socio-economic development and capacity to respond to environmental and health challenges. We discuss three case-based methodological examples from Pacific Basin environmental health impact assessments. These methods could be used to improve environmental health evidence at all country and regional levels across a spectrum of big data availability to no data. These methods are, 1) a risk assessment of airborne particulate matter in Korea based on the chemical composition of these particulates; 2) the use of system dynamics to appraise the influences of a range of environmental health determinants on child health outcomes in remote Solomon Islands; and 3) precision environmental public health methodologies based on comprehensive data collection, analyses, and modelling (including Bayesian belief networks and spatial epidemiology) increasing precision for good environmental health decision making to prevent and control a zoonotic disease in Fiji Islands. We show that while a common theme across the three examples is the value of high quality and quantity data to support stronger policy decisions and appropriate prioritizing of investment, it is also clear that for many countries in the Pacific Basin, sufficient data will remain a challenge to inform decision makers about environmental impact on health.
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Affiliation(s)
- Paul Jagals
- Children’s Health and Environment Program, Child Health Research Centre, The University of Queensland, Australia
| | - Injeong Kim
- Korea Institute of Industrial Technology, Seoul, South Korea
| | - Claire Brereton
- Children’s Health and Environment Program, Child Health Research Centre, The University of Queensland, Australia
| | - Colleen L. Lau
- School of Public Health, The University of Queensland, Australia
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25
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Leem YC, Myoung N, Hong SH, Jeong S, Seo O, Park SJ, Yim SY, Kim JH. Near-UV light emitting diode with on-chip photocatalysts for purification applications. Nanoscale Adv 2022; 4:3585-3591. [PMID: 36134344 PMCID: PMC9400512 DOI: 10.1039/d2na00305h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/13/2022] [Accepted: 07/25/2022] [Indexed: 06/16/2023]
Abstract
A new design for light-emitting diodes (LEDs) with on-chip photocatalysts is presented for purification applications. An array of disk-shaped TiO2, with a diameter of several hundred nanometers, combined with SiO2 pedestals was fabricated directly on the surface of an InGaN-based near-ultraviolet (UV) LED using a dry etching process. The high refractive-index contrast at the boundary and the circular shape can effectively confine the near-UV light generated from the LED through multiple internal reflections inside the TiO2 nanodisks. Such a feature results in the enhancement of light absorption by the photocatalytic TiO2. The degradation of the organic dye malachite green was monitored as a model photocatalytic reaction. The proposed structure of LEDs with TiO2/SiO2 nanodisk/pedestal array exhibited a photocatalytic activity that was three times higher than the activity of LEDs with a TiO2 planar layer. The integration of photocatalytic materials with near-UV LEDs in a single system is promising for various purification applications, such as sterilization and disinfection.
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Affiliation(s)
- Young-Chul Leem
- Advanced Photonics Research Institute, Gwangju Institute of Science and Technology Gwangju 61005 Korea
- School of Materials Science and Engineering, Gwangju Institute of Science and Technology Gwangju 61005 Korea
| | - NoSoung Myoung
- Advanced Photonics Research Institute, Gwangju Institute of Science and Technology Gwangju 61005 Korea
| | - Sang-Hyun Hong
- School of Materials Science and Engineering, Gwangju Institute of Science and Technology Gwangju 61005 Korea
- GIST Central Research Facilities, Gwangju Institute of Science and Technology Gwangju 61005 Korea
| | - Sehee Jeong
- Advanced Photonics Research Institute, Gwangju Institute of Science and Technology Gwangju 61005 Korea
| | - Okkyun Seo
- Center for Synchrotron Radiation Research, Japan Synchrotron Radiation Research Institute (JASRI) 1-1-1, Kouto, Sayo Hyogo 679-5198 Japan
| | - Seong-Ju Park
- School of Materials Science and Engineering, Gwangju Institute of Science and Technology Gwangju 61005 Korea
- School of Energy Engineering, Korea Institute of Energy Technology Naju Jeonnam 58217 Korea
| | - Sang-Youp Yim
- Advanced Photonics Research Institute, Gwangju Institute of Science and Technology Gwangju 61005 Korea
| | - Joon Heon Kim
- Advanced Photonics Research Institute, Gwangju Institute of Science and Technology Gwangju 61005 Korea
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26
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Razak MR, Aris AZ, Md Yusoff F, Yusof ZNB, Kim SD, Kim KW. Assessment of RNA extraction protocols from cladocerans. PLoS One 2022; 17:e0264989. [PMID: 35472091 PMCID: PMC9041806 DOI: 10.1371/journal.pone.0264989] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Accepted: 02/18/2022] [Indexed: 11/18/2022] Open
Abstract
The usage of cladocerans as non-model organisms in ecotoxicological and risk assessment studies has intensified in recent years due to their ecological importance in aquatic ecosystems. The molecular assessment such as gene expression analysis has been introduced in ecotoxicological and risk assessment to link the expression of specific genes to a biological process in the cladocerans. The validity and accuracy of gene expression analysis depends on the quantity, quality and integrity of extracted ribonucleic acid (RNA) of the sample. However, the standard methods of RNA extraction from the cladocerans are still lacking. This study evaluates the extraction of RNA from tropical freshwater cladocerans Moina micrura using two methods: the phenol-chloroform extraction method (QIAzol) and a column-based kit (Qiagen Micro Kit). Glycogen was introduced in both approaches to enhance the recovery of extracted RNA and the extracted RNA was characterised using spectrophotometric analysis (NanoDrop), capillary electrophoresis (Bioanalyzer). Then, the extracted RNA was analysed with reverse transcription polymerase chain reaction (RT-PCR) to validate the RNA extraction method towards downstream gene expression analysis. The results indicate that the column-based kit is most suitable for the extraction of RNA from M. micrura, with the quantity (RNA concentration = 26.90 ± 6.89 ng/μl), quality (A260:230 = 1.95 ± 0.15, A280:230 = 1.85 ± 0.09) and integrity (RNA integrity number, RIN = 7.20 ± 0.16). The RT-PCR analysis shows that the method successfully amplified both alpha tubulin and actin gene at 33-35 cycles (i.e. Ct = 32.64 to 33.48). The results demonstrate that the addition of glycogen is only suitable for the phenol-chloroform extraction method. RNA extraction with high and comprehensive quality control assessment will increase the accuracy and reliability of downstream gene expression, thus providing more ecotoxicological data at the molecular biological level on other freshwater zooplankton species.
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Affiliation(s)
- Muhammad Raznisyafiq Razak
- Faculty of Forestry and Environment, Department of Environment, Universiti Putra Malaysia, Selangor, Malaysia
| | - Ahmad Zaharin Aris
- Faculty of Forestry and Environment, Department of Environment, Universiti Putra Malaysia, Selangor, Malaysia
- International Institute of Aquaculture and Aquatic Sciences, Universiti Putra Malaysia, Negeri Sembilan, Malaysia
| | - Fatimah Md Yusoff
- International Institute of Aquaculture and Aquatic Sciences, Universiti Putra Malaysia, Negeri Sembilan, Malaysia
- Faculty of Agriculture, Department of Aquaculture, Universiti Putra Malaysia, Selangor, Malaysia
| | - Zetty Norhana Balia Yusof
- Faculty of Biotechnology and Biomolecular Science, Department of Biochemistry, Universiti Putra Malaysia, Selangor, Malaysia
- Institute of Bioscience, Universiti Putra Malaysia, Selangor, Malaysia
| | - Sang Don Kim
- School of Earth Sciences and Environmental Engineering, Gwangju Institute of Science and Technology, Buk-gu, Gwangju, Republic of Korea
| | - Kyoung Woong Kim
- School of Earth Sciences and Environmental Engineering, Gwangju Institute of Science and Technology, Buk-gu, Gwangju, Republic of Korea
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27
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Song J, Won J, Bang W. Time-resolved Rayleigh scattering measurements of methane clusters for laser-cluster fusion experiments. PLoS One 2021; 16:e0261574. [PMID: 34919591 PMCID: PMC8682908 DOI: 10.1371/journal.pone.0261574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Accepted: 12/05/2021] [Indexed: 12/04/2022] Open
Abstract
We present a time-resolved analysis of Rayleigh scattering measurements to determine the average size of methane clusters and find the optimum timing for laser-cluster fusion experiments. We measure Rayleigh scattering and determine the average size of methane clusters varying the backing pressure (P0) from 11 bar to 69 bar. Regarding the onset of clustering, we estimate that the average size of methane clusters at the onset of clustering is Nc0≅20 at 11 bar. According to our measurements, the average cluster radius r follows the power law of r∝P01.86. Our ion time-of-flight measurements indicate that we have produced energetic deuterium ions with kT = 52±2 keV after laser-cluster interaction using CD4 gas at 50 bar. We find that this ion temperature agrees with the predicted temperature from CD4 clusters at 50 bar with r = 14 nm assuming the Coulomb explosion model.
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Affiliation(s)
- J. Song
- Department of Physics and Photon Science, GIST, Gwangju, South Korea
- Center for Relativistic Laser Science, Institute for Basic Science, Gwangju, South Korea
| | - J. Won
- Department of Physics and Photon Science, GIST, Gwangju, South Korea
- Center for Relativistic Laser Science, Institute for Basic Science, Gwangju, South Korea
| | - W. Bang
- Department of Physics and Photon Science, GIST, Gwangju, South Korea
- Center for Relativistic Laser Science, Institute for Basic Science, Gwangju, South Korea
- * E-mail:
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28
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Abstract
Male reproductive aging, or andropause, is associated with gradual age-related changes in testicular properties, sperm production, and erectile function. The testis, which is the primary male reproductive organ, produces sperm and androgens. To understand the transcriptional changes underlying male reproductive aging, we performed transcriptome analysis of aging testes in mice. A total of 31,386 mRNAs and 9387 long non-coding RNAs (lncRNAs) were identified in the mouse testes of diverse age groups (3, 6, 12, and 18 months old) by total RNA sequencing. Of them, 1571 mRNAs and 715 lncRNAs exhibited changes in their levels during testicular aging. Most of these aging-related transcripts exhibited slight and continuous expression changes during aging, whereas some (9.6%) showed larger expression changes. The aging-related transcripts could be classified into diverse expression patterns, in which the transcripts changed mainly at 3-6 months or at 12-18 months. Our subsequent in silico analysis provided insight into the potential features of testicular aging-related mRNAs and lncRNAs. We identified testis-specific aging-related transcripts (121 mRNAs and 25 lncRNAs) by comparison with a known testis-specific transcript profile, and then predicted the potential reproduction-related functions of the mRNAs. By selecting transcripts that are altered only between 3 and 18 months, we identified 46 mRNAs and 34 lncRNAs that are stringently related to the terminal stage of male reproductive aging. Some of these mRNAs were related to hormonal regulation. Finally, our in silico analysis of the 34 aging-related lncRNAs revealed that they co-localized with 19 testis-expressed protein-coding genes, 13 of which are considered to show testis-specific or -predominant expression. These nearby genes could be potential targets of cis-regulation by the aging-related lncRNAs. Collectively, our results identify a number of testicular aging-related mRNAs and lncRNAs in mice and provide a basis for the future investigation of these transcripts in the context of aging-associated testicular dysfunction.
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Affiliation(s)
| | | | | | | | - Chunghee Cho
- School of Life Sciences, Gwangju Institute of Science and Technology, Gwangju 61005, Korea; (G.H.); (S.-H.H.); (S.-J.L.); (S.-P.H.)
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29
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Oh E, Kim JH, Um J, Jung DW, Williams DR, Lee H. Genome-Wide Transcriptomic Analysis of Non-Tumorigenic Tissues Reveals Aging-Related Prognostic Markers and Drug Targets in Renal Cell Carcinoma. Cancers (Basel) 2021; 13:3045. [PMID: 34207247 PMCID: PMC8234889 DOI: 10.3390/cancers13123045] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2021] [Revised: 06/10/2021] [Accepted: 06/12/2021] [Indexed: 01/03/2023] Open
Abstract
The relationship between expression of aging-related genes in normal tissues and cancer patient survival has not been assessed. We developed a genome-wide transcriptomic analysis approach for normal tissues adjacent to the tumor to identify aging-related transcripts associated with survival outcome, and applied it to 12 cancer types. As a result, five aging-related genes (DUSP22, MAPK14, MAPKAPK3, STAT1, and VCP) in normal tissues were found to be significantly associated with a worse survival outcome in patients with renal cell carcinoma (RCC). This computational approach was investigated using nontumorigenic immune cells purified from young and aged mice. Aged immune cells showed upregulated expression of all five aging-related genes and promoted RCC invasion compared to young immune cells. Further studies revealed DUSP22 as a regulator and druggable target of metastasis. DUSP22 gene knockdown reduced RCC invasion and the small molecule inhibitor BML-260 prevented RCC dissemination in a tumor/immune cell xenograft model. Overall, these results demonstrate that deciphering the relationship between aging-related gene expression in normal tissues and cancer patient survival can provide new prognostic markers, regulators of tumorigenesis and novel targets for drug development.
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Affiliation(s)
- Euiyoung Oh
- School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, 123 Cheomdangwagi-ro, Buk-Gu, Gwangju 61005, Korea;
| | - Jun-Hyeong Kim
- New Drug Targets Laboratory, School of Life Sciences, Gwangju Institute of Science and Technology, 123 Cheomdangwagi-ro, Buk-Gu, Gwangju 61005, Korea; (J.-H.K.); (J.U.); (D.R.W.)
| | - JungIn Um
- New Drug Targets Laboratory, School of Life Sciences, Gwangju Institute of Science and Technology, 123 Cheomdangwagi-ro, Buk-Gu, Gwangju 61005, Korea; (J.-H.K.); (J.U.); (D.R.W.)
| | - Da-Woon Jung
- New Drug Targets Laboratory, School of Life Sciences, Gwangju Institute of Science and Technology, 123 Cheomdangwagi-ro, Buk-Gu, Gwangju 61005, Korea; (J.-H.K.); (J.U.); (D.R.W.)
| | - Darren R. Williams
- New Drug Targets Laboratory, School of Life Sciences, Gwangju Institute of Science and Technology, 123 Cheomdangwagi-ro, Buk-Gu, Gwangju 61005, Korea; (J.-H.K.); (J.U.); (D.R.W.)
| | - Hyunju Lee
- School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, 123 Cheomdangwagi-ro, Buk-Gu, Gwangju 61005, Korea;
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30
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Abstract
A novel method of macroscopically entangled light-pair generation is presented for a quantum laser using randomness-based deterministic phase control of coherent light in a coupled Mach-Zehnder interferometer (MZI). Unlike the particle nature-based quantum correlation in conventional quantum mechanics, the wave nature of photons is applied for collective phase control of coherent fields, resulting in a deterministically controllable nonclassical phenomenon. For the proof of principle, the entanglement between output light fields from a coupled MZI is examined using the Hong-Ou-Mandel-type anticorrelation technique, where the anticorrelation is a direct evidence of the nonclassical features in an interferometric scheme. For the generation of random phase bases between two bipartite input coherent fields, a deterministic control of opposite frequency shifts results in phase sensitive anticorrelation, which is a macroscopic quantum feature.
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Affiliation(s)
- Byoung S Ham
- Center for Photon Information Processing, School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, 123 Chumdangwagi-ro, Buk-gu, Gwangju, 61005, South Korea.
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31
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Park JH, Yang X, Lee JY, Park MD, Bae SY, Pristovsek M, Amano H, Lee DS. The stability of graphene and boron nitride for III-nitride epitaxy and post-growth exfoliation. Chem Sci 2021; 12:7713-7719. [PMID: 34168823 PMCID: PMC8188504 DOI: 10.1039/d1sc01642c] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Accepted: 04/28/2021] [Indexed: 01/05/2023] Open
Abstract
A challenging approach, but one providing a key solution to material growth, remote epitaxy (RE)-a novel concept related to van der Waals epitaxy (vdWE)-requires the stability of a two-dimensional (2-D) material. However, when graphene, a representative 2-D material, is present on substrates that have a nitrogen atom, graphene loss occurs. Although this phenomenon has remained a hurdle for over a decade, restricting the advantages of applying graphene in the growth of III-nitride materials, few previous studies have been conducted. Here, we report the stability of graphene on substrates containing oxygen or nitrogen atoms. Graphene has been observed on highly decomposed Al2O3; however, graphene loss occurred on decomposed AlN at temperatures over 1300 °C. To overcome graphene loss, we investigated 2-D hexagonal boron nitride (h-BN) as an alternative. Unlike graphene on AlN, it was confirmed that h-BN on AlN was intact after the same high-temperature process. Moreover, the overgrown AlN layers on both h-BN/AlN and h-BN/Al2O3 could be successfully exfoliated, which indicates that 2-D h-BN survived after AlN growth and underlines its availability for the vdWE/RE of III-nitrides with further mechanical transfer. By enhancing the stability of the 2-D material on the substrate, our study provides insights into the realization of a novel epitaxy concept.
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Affiliation(s)
- Jeong-Hwan Park
- Department of Electronics, Nagoya University Nagoya 464-8603 Japan
- School of Electrical Engineering and Computer Science (EECS), Gwangju Institute of Science and Technology (GIST) Gwangju 61005 Republic of Korea
| | - Xu Yang
- Institute of Materials and Systems for Sustainability (IMaSS), Nagoya University Nagoya 464-8601 Japan
| | - Jun-Yeob Lee
- School of Electrical Engineering and Computer Science (EECS), Gwangju Institute of Science and Technology (GIST) Gwangju 61005 Republic of Korea
| | - Mun-Do Park
- School of Electrical Engineering and Computer Science (EECS), Gwangju Institute of Science and Technology (GIST) Gwangju 61005 Republic of Korea
| | - Si-Young Bae
- Energy Materials Center, Korea Institute of Ceramic Engineering and Technology (KICET) Jinju 52851 Republic of Korea
| | - Markus Pristovsek
- Institute of Materials and Systems for Sustainability (IMaSS), Nagoya University Nagoya 464-8601 Japan
| | - Hiroshi Amano
- Institute of Materials and Systems for Sustainability (IMaSS), Nagoya University Nagoya 464-8601 Japan
| | - Dong-Seon Lee
- School of Electrical Engineering and Computer Science (EECS), Gwangju Institute of Science and Technology (GIST) Gwangju 61005 Republic of Korea
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32
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Abstract
Due to the complex structure and function of the kidneys, the mechanism of kidney disease is unclear. In particular, transcriptomics approaches at the bulk level are unable to differentiate primary autonomous responses, which lead to disease development, from secondary cell non-autonomous responses. Single-cell analysis techniques can overcome the limitations inherent in the measurement of heterogeneous cell populations and clarify the central issues in kidney biology and disease pathogenesis. Single-cell sequencing helps in identifying disease-related biomarkers and pathways, stratifying patients, and deciding on appropriate treatment methods. Here we review a variety of single-cell analysis techniques and single-cell transcriptomics studies performed in the field of nephrology. Moreover, we discuss the future prospects of single-cell analysis-based precision medicine in nephrology.
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Affiliation(s)
- Jisoo Kim
- School of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, Korea
| | - Jihwan Park
- School of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, Korea
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33
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Kwon K, Hwang Y, Jung J, Tae G. Enhanced Transport and Permeation of a Polymeric Nanocarrier across the Retina by Mixing with ATP upon Intravitreal Injection. Pharmaceutics 2021; 13:463. [PMID: 33805533 PMCID: PMC8065980 DOI: 10.3390/pharmaceutics13040463] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2021] [Revised: 03/26/2021] [Accepted: 03/26/2021] [Indexed: 11/18/2022] Open
Abstract
The outer part of the retina pigment epithelium (RPE) in the retina is the main site of neovascularization associated with retinal diseases. However, various obstacles interrupt the delivery of medicines across the RPE, mainly due to the well-developed tight junctions in the RPE. Currently, there is no practical formulation to overcome this issue. In this study, we demonstrated that simple mixing with adenosine tetraphosphate (ATP) has the potential to greatly enhance the transport and permeation of a polymeric nanocarrier across the retina via intravitreal administration. Chitosan-functionalized, pluronic-based nanocarrier (NC), which can deliver various biomolecules efficiently, was used as a polymeric nanocarrier. Mixing with ATP facilitated the diffusion of the nanocarrier in the vitreous humor by reducing the electrostatic interaction between NC and negatively charged glycosaminoglycans (GAGs) in the vitreous humor. Mixing with ATP also allowed the penetration of NC across the whole retina, and it resulted in a great increase (approximately nine times) in the transport of NC across the retina, as well as spreading it throughout the whole retina upon intravitreal administration in a mouse model. This enhanced permeation across the retina was specific to ATP but not to GTP, suggesting the possibility of P2Y receptor-mediated tight junction disruption by ATP.
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Affiliation(s)
| | | | | | - Giyoong Tae
- School of Materials Science and Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea; (K.K.); (Y.H.); (J.J.)
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34
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Mu Y, Maharjan Y, Kumar Dutta R, Wei X, Kim JH, Son J, Park C, Park R. Pharmacological inhibition of catalase induces peroxisome leakage and suppression of LPS induced inflammatory response in Raw 264.7 cell. PLoS One 2021; 16:e0245799. [PMID: 33606716 PMCID: PMC7894815 DOI: 10.1371/journal.pone.0245799] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Accepted: 01/07/2021] [Indexed: 12/02/2022] Open
Abstract
Peroxisomes are metabolically active organelles which are known to exert anti-inflammatory effects especially associated with the synthesis of mediators of inflammation resolution. However, the role of catalase and effects of peroxisome derived reactive oxygen species (ROS) caused by lipid peroxidation through 4-hydroxy-2-nonenal (4-HNE) on lipopolysaccharide (LPS) mediated inflammatory pathway are largely unknown. Here, we show that inhibition of catalase by 3-aminotriazole (3-AT) results in the generation of peroxisomal ROS, which contribute to leaky peroxisomes in RAW264.7 cells. Leaky peroxisomes cause the release of matrix proteins to the cytosol, which are degraded by ubiquitin proteasome system. Furthermore, 3-AT promotes the formation of 4HNE-IκBα adduct which directly interferes with LPS induced NF-κB activation. Even though, a selective degradation of peroxisome matrix proteins and formation of 4HNE- IκBα adduct are not directly related with each other, both of them are could be the consequences of lipid peroxidation occurring at the peroxisome membrane.
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Affiliation(s)
- Yizhu Mu
- Department of Biomedical Science & Engineering, Gwangju Institute of Science & Technology, Gwangju, Republic of Korea
| | - Yunash Maharjan
- Department of Biomedical Science & Engineering, Gwangju Institute of Science & Technology, Gwangju, Republic of Korea
| | - Raghbendra Kumar Dutta
- Department of Biomedical Science & Engineering, Gwangju Institute of Science & Technology, Gwangju, Republic of Korea
| | - Xiaofan Wei
- Department of Biomedical Science & Engineering, Gwangju Institute of Science & Technology, Gwangju, Republic of Korea
| | - Jin Hwi Kim
- Department of Biomedical Science & Engineering, Gwangju Institute of Science & Technology, Gwangju, Republic of Korea
| | - Jinbae Son
- Department of Biomedical Science & Engineering, Gwangju Institute of Science & Technology, Gwangju, Republic of Korea
| | - Channy Park
- Department of Biomedical Science & Engineering, Gwangju Institute of Science & Technology, Gwangju, Republic of Korea
| | - Raekil Park
- Department of Biomedical Science & Engineering, Gwangju Institute of Science & Technology, Gwangju, Republic of Korea
- * E-mail:
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Abstract
So far, unconditional security in key distribution processes has been confined to quantum key distribution (QKD) protocols based on the no-cloning theorem of nonorthogonal bases. Recently, a completely different approach, the unconditionally secured classical key distribution (USCKD), has been proposed for unconditional security in the purely classical regime. Unlike QKD, both classical channels and orthogonal bases are key ingredients in USCKD, where unconditional security is provided by deterministic randomness via path superposition-based reversible unitary transformations in a coupled Mach-Zehnder interferometer. Here, the first experimental demonstration of the USCKD protocol is presented.
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Affiliation(s)
- Byoung S Ham
- Center for Photon Information Processing, School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, 123 Chumdangwagi-ro, Buk-gu, Gwangju, 61005, South Korea.
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36
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Ham BS. Analysis of phase noise effects in a coupled Mach-Zehnder interferometer for a much stabilized free-space optical link. Sci Rep 2021; 11:1900. [PMID: 33479354 PMCID: PMC7820431 DOI: 10.1038/s41598-021-81522-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Accepted: 12/28/2020] [Indexed: 12/03/2022] Open
Abstract
Recently, new physics for unconditional security in a classical key distribution (USCKD) has been proposed and demonstrated in a frame of a double Mach-Zehnder interferometer (MZI) as a proof of principle, where the unconditional security is rooted in MZI channel superposition. Due to environmental phase noise caused by temperature variations, atmospheric turbulences, and mechanical vibrations, free-space optical links have been severely challenged for both classical and quantum communications. Here, the double MZI scheme of USCKD is analyzed for greatly subdued environment-caused phase noise via double unitary transformation, resulting in potential applications of free-space optical links, where the free-space optical link has been a major research area from fundamental physics of atomic clock and quantum key distribution to potential applications of geodesy, navigation, and MIMO technologies in mobile communications systems.
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Affiliation(s)
- Byoung S Ham
- Center for Photon Information Processing, School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology, 123 Chumdangwagi-ro, Buk-gu, Gwangju, 61005, South Korea.
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37
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Dutta RK, Maharjan Y, Lee JN, Park C, Ho YS, Park R. Catalase deficiency induces reactive oxygen species mediated pexophagy and cell death in the liver during prolonged fasting. Biofactors 2021; 47:112-125. [PMID: 33496364 DOI: 10.1002/biof.1708] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/07/2020] [Accepted: 12/04/2020] [Indexed: 12/19/2022]
Abstract
Peroxisomes are dynamic organelles that participate in a diverse array of cellular processes, including β-oxidation, which produces a considerable amount of reactive oxygen species (ROS). Although we showed that catalase depletion induces ROS-mediated pexophagy in cells, the effect of catalase deficiency during conditions that favor ROS generation remains elusive in mice. In this study, we reported that prolonged fasting in catalase-knockout (KO) mice drastically increased ROS production, which induced liver-specific pexophagy, an autophagic degradation of peroxisomes. In addition, increased ROS generation induced the production of pro-inflammatory cytokines in the liver tissues of catalase-KO mice. Furthermore, there was a significant increase in the levels of aspartate transaminase and alanine transaminase as well as apparent cell death in the liver of catalase-KO mice during prolonged fasting. However, an intra-peritoneal injection of the antioxidant N-acetyl-l-cysteine (NAC) and autophagy inhibitor chloroquine inhibited the inflammatory response, liver damage, and pexophagy in the liver of catalase-KO mice during prolonged fasting. Consistently, genetic ablation of autophagy, Atg5 led to suppression of pexophagy during catalase inhibition by 3-aminotriazole (3AT). Moreover, treatment with chloroquine also ameliorated the inflammatory response and cell death in embryonic fibroblast cells from catalase-KO mice. Taken together, our data suggest that ROS-mediated liver-specific pexophagy observed during prolonged fasting in catalase-KO mice may be responsible for the process associated with hepatic cell death.
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Affiliation(s)
- Raghbendra Kumar Dutta
- Department of Biomedical Science & Engineering, Gwangju Institute of Science & Technology, Gwangju, Republic of Korea
| | - Yunash Maharjan
- Department of Biomedical Science & Engineering, Gwangju Institute of Science & Technology, Gwangju, Republic of Korea
| | - Joon No Lee
- Department of Biomedical Science & Engineering, Gwangju Institute of Science & Technology, Gwangju, Republic of Korea
| | - Channy Park
- Department of Biomedical Science & Engineering, Gwangju Institute of Science & Technology, Gwangju, Republic of Korea
| | - Ye-Shih Ho
- Institute of Environmental Health Sciences and Department of Biochemistry and Molecular Biology, Wayne State University, Detroit, Michigan, USA
| | - Raekil Park
- Department of Biomedical Science & Engineering, Gwangju Institute of Science & Technology, Gwangju, Republic of Korea
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38
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Nguyen T, Kim M, Gwak J, Lee JJ, Choi KY, Lee KH, Kim JG. Investigation of brain functional connectivity in patients with mild cognitive impairment: A functional near-infrared spectroscopy (fNIRS) study. J Biophotonics 2019; 12:e201800298. [PMID: 30963713 DOI: 10.1002/jbio.201800298] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Revised: 03/17/2019] [Accepted: 04/04/2019] [Indexed: 06/09/2023]
Abstract
This study examines brain functional connectivity in both cognitively normal seniors and patients with mild cognitive impairment (MCI) to elucidate prospective markers of MCI. A homemade four-channel functional near-infrared spectroscopy (fNIRS) system was employed to measure hemodynamic responses in the subjects' prefrontal cortex during a resting state, an oddball task, a 1-back task, and a verbal fluency task. Brain functional connectivity was calculated as the Pearson correlation coefficients between fNIRS channels. The results show that during the verbal fluency task, while the healthy control (HC) group presents a significantly stronger inter-hemispheric connectivity compared to intra-hemispheric connectivity, there is no difference between the inter- and intra-hemispheric connectivity in the MCI group. In addition, a comparison between the MCI and HC connectivity reveals that the MCI group has a statistically higher right and inter-hemispheric connectivity during the resting state, but a significantly lower left and inter-hemispheric connectivity during the verbal fluency test. These findings demonstrate the potential of fNIRS to study brain functional connectivity in neurodegenerative diseases.
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Affiliation(s)
- Thien Nguyen
- Department of Biomedical Science and Engineering, Gwangju Institute of Science and Technology, Gwangju, Republic of Korea
| | - Minhee Kim
- Department of Biomedical Science and Engineering, Gwangju Institute of Science and Technology, Gwangju, Republic of Korea
| | - Jeonghwan Gwak
- Department of Software, Korea National University of Transportation, Chungju, Republic of Korea
| | - Jang J Lee
- Department of Biomedical Science, Chosun University, Gwangju, Republic of Korea
| | - Kyu Y Choi
- Department of Biomedical Science, Chosun University, Gwangju, Republic of Korea
| | - Kun H Lee
- Department of Biomedical Science, Chosun University, Gwangju, Republic of Korea
- National Research Center for Dementia, Chosun University, Gwangju, Republic of Korea
| | - Jae G Kim
- Department of Biomedical Science and Engineering, Gwangju Institute of Science and Technology, Gwangju, Republic of Korea
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Chung E, Vitkin A. Photon mayhem: new directions in diagnostic and therapeutic photomedicine. Biomed Eng Lett 2019; 9:275-277. [PMID: 31456888 PMCID: PMC6694341 DOI: 10.1007/s13534-019-00125-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Accepted: 07/27/2019] [Indexed: 10/26/2022] Open
Affiliation(s)
- Euiheon Chung
- Department of Biomedical Science and Engineering (BMSE), Gwangju Institute of Science and Technology (GIST), Gwangju, Republic of Korea
- Institute of Integrated Technology, GIST, Gwangju, Republic of Korea
- School of Mechanical Engineering, GIST, Gwangju, Republic of Korea
| | - Alex Vitkin
- Departments of Medical Biophysics, University of Toronto, Toronto, ON Canada
- Departments of Radiation Oncology, University of Toronto, Toronto, ON Canada
- Division of Biophysics and Bioimaging, Princess Margaret Cancer Centre, University Health Network, Toronto, ON Canada
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40
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Abstract
This paper reports an outdoor-use polymerase chain reaction (PCR) technology in which stability of resistance temperature detectors (RTDs) is remarkably improved. A thin-film RTD made of non-annealed Pt shows accuracy degradation because the resistance of the RTD tends to decrease during the PCR operation. Thus, the annealing process is applied to the Pt RTD to improve the stability, which is a prerequisite to the accurate measurement of the absolute temperature. Both heaters and the RTD are fabricated on a thin quartz substrate whose melting temperature is high enough for annealing. The performances in the PCR time and power consumption are enhanced by reducing the size of the heater chips with no degradation in the temperature uniformity. A spring-loaded electrode is employed to simplify the procedure of electrical connection to the thermal controller and loading/unloading of the PCR chip. The contact area of the electrical connection is so small that the conductive thermal resistance increases; thereby small heat dissipation can be exploited for low-power operation. The stability of the RTD is experimentally confirmed in terms of resistance variation over repeated PCR operations (four times). The least variation of 0.005%, which corresponds to a negligible temperature variation of 0.038 °C for the PCR, is achieved from the RTD annealed for 5 min at 450 °C. The gel-electrophoresis result indicates that the PCR performance of the proposed system using a film-type PCR chip is comparable to that of a conventional system using a vial tube despite its low power consumption.
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Affiliation(s)
- Juhun Lim
- Department of Biomedical Science and Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju, Republic of Korea
| | - Sangdo Jeong
- Department of Biomedical Science and Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju, Republic of Korea
| | - Miyoung Kim
- School of Mechanical Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju, Republic of Korea
| | - Jong-Hyun Lee
- Department of Biomedical Science and Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju, Republic of Korea
- School of Mechanical Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju, Republic of Korea
- * E-mail:
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41
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Mahata MK, Lee KT. Development of near-infrared sensitized core-shell-shell upconverting nanoparticles as pH-responsive probes. Nanoscale Adv 2019; 1:2372-2381. [PMID: 36131991 PMCID: PMC9418008 DOI: 10.1039/c9na00088g] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2019] [Accepted: 04/29/2019] [Indexed: 05/09/2023]
Abstract
Recently, the functionalization of nanoparticles, either within themselves or on the outer surface and its application in medicine, turned out to be the ultimate goal of nanotechnology. By providing these nanoparticles with chemical functional groups, one can force the nanoparticles to target the markers of the particular diseases or to measure the quantity and distribution of various intracellular species. In this paper, we report our development of a pH-responsive nanocomposite based on lanthanide-doped upconverting nanoparticles (UCNPs). Through multiphoton absorption and energy migration between spatially separated Nd3+, Yb3+, and Tm3+ in a three-layered NaYF4 host coated with FITC (fluorescein-5-isothiocyanate), this nanocomposite can measure the pH with high sensitivity. The fundamental acidity measurement is based on the pH-dependent equilibrium of the bright and dark states of FITC. The tremendous advantages of this system, regarding the pH measurement, come from the fact that the versatility of UCNP-imaging can fully be exploited. This includes the fact that (a) the optical wavelengths for the sensitization (980 nm and/or 808 nm) and the emission bands (UV, visible) are well separated, (b) the spectral overlap between FITC (absorption) and Tm3+ (emission) is substantially high, (c) there is no background signal due to the near-infrared laser, and (d) the signals are consistent regardless of the fluctuations by monitoring the ratio of blue band with respect to the unaffected self-reference (red and near-infrared bands). Moreover, the double shell structure is obviously superior to the core-shell structure in that it enhances the spectral separation between the sensitizer and the emitter in the upconversion process, inhibiting any unnecessary contamination in the spectra. Finally, it is noteworthy that Yb3+ plays crucial roles as a sensitizer at 980 nm excitation and a bridge above which 808 nm excitation migrates from Nd3+ to Tm3+ via the Yb3+ excited state.
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Affiliation(s)
- Manoj Kumar Mahata
- Department of Chemistry, School of Physics and Chemistry, Gwangju Institute of Science and Technology (GIST) Gwangju 61005 Korea
| | - Kang Taek Lee
- Department of Chemistry, School of Physics and Chemistry, Gwangju Institute of Science and Technology (GIST) Gwangju 61005 Korea
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42
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Kim S, Kim E, Jung G, Lee S, Kim JG. The hemodynamic changes during cupping therapy monitored by using an optical sensor embedded cup. J Biophotonics 2019; 12:e201800286. [PMID: 30604505 DOI: 10.1002/jbio.201800286] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Revised: 12/10/2018] [Accepted: 01/02/2019] [Indexed: 05/07/2023]
Abstract
Cupping therapy is one form of alternative medicine that is used widely across the world. Although the applications of cupping therapy including pain relief have a 1000-year history, the therapeutic effect of cupping is still questionable due to a lack of scientific evidence. Therefore, in the present study, we embedded a near-infrared spectroscopic sensor into a suction cup to monitor the hemodynamic changes on the treated site while the hemodynamics at the surrounding tissue of the cup was also simultaneously monitored by another near-infrared spectroscopic sensor. The results from 10 healthy male subjects show a dramatic increase of the oxy-hemoglobin (OHb) and deoxy-hemoglobin (RHb) concentrations at the treatment site while the OHb and RHb levels were decreased at the surrounding tissue. Moreover, after the treatment, we observed that the OHb concentrations were maintained at a higher level than before treatment at both sites, which may demonstrate how cupping therapy works for treatment. In summary, the results showed that cupping therapy increases blood volume and tissue oxygenation at the treatment site while those were slightly decreased at the surrounding tissue. This study showed that the embedding of near-infrared spectroscopy in a cupping system could offer a better understanding of the mechanism of cupping therapy.
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Affiliation(s)
- Sungchul Kim
- Department of Biomedical Science and Engineering, Institute of Integrated Technology, Gwangju Institute of Science and Technology (GIST), Gwangju, South Korea
| | - Evgenii Kim
- School of Electrical Engineering and Computer Science, Gwangju Institute of Science and Technology (GIST), Gwangju, South Korea
| | - Geunho Jung
- Department of Biomedical Science and Engineering, Institute of Integrated Technology, Gwangju Institute of Science and Technology (GIST), Gwangju, South Korea
| | - Sanghun Lee
- Korea Medicine Fundamental Research Division, Korea Institute of Oriental Medicine, Daejeon, South Korea
| | - Jae G Kim
- Department of Biomedical Science and Engineering, Institute of Integrated Technology, Gwangju Institute of Science and Technology (GIST), Gwangju, South Korea
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Song H, Cho J, Lee S, Park JY, Choi BM, Kim MS, Kim WG, Lee MC, Kim HI. Transcortical photothrombotic pyramidotomy model with persistent motor deficits. PLoS One 2019; 13:e0204842. [PMID: 30596648 PMCID: PMC6312246 DOI: 10.1371/journal.pone.0204842] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2018] [Accepted: 09/14/2018] [Indexed: 11/28/2022] Open
Abstract
Traditional pyramidotomy models have a high mortality rate from breathing difficulties and show early recovery from the induced motor deficits. This study establishes a novel pyramidotomy technique in Sprague Dawley rats that generates persistent motor deficits and has a reduced mortality rate. We used viral neural tracing to identify the course and relative distribution of forelimb and hindlimb motor fibers (n = 9). On basis of the neural tracing data, the medullary pyramid was targeted dorsally from the cerebellar cortex for photothrombotic infarct lesioning (n = 18). The photothrombotic technique selectively destroyed the corticospinal fibers in the medullary pyramid with relative preservation of neighboring grey-matter tissue. MicroPET imaging using 2-deoxy-2-[18F]-fluoro-D-glucose (FDG-microPET) showed a decrease in regional cerebral glucose metabolism (rCGM) in the bilateral pyramid and ipsilateral sensory cortex (p < 0.001, FDR q < 0.05). In addition, the trapezoid bodies and superior olivary nuclei showed a decrease in rCGM, compatible with damage caused during the introduction of the optical fiber. Connected structures such as the inferior colliculi and auditory cortices also showed decreases in rCGM in both hemispheres (p < 0.001, FDR q < 0.05). There was a significant and persistent decrease in motor and sensory function in the contralateral limb following pyramidotomy, as demonstrated by performance in the single pellet reaching task and the foot-fault test. There was no operative mortality or loss of respiratory function in this study. These results indicate that photothrombotic pyramidotomy with a dorsal transcortical approach is a safe and reliable technique for generating a pyramidotomy model with persistent motor deficits.
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Affiliation(s)
- Hanlim Song
- Department of Biomedical Science and Engineering, Gwangju Institute of Science and Technology, Gwangju, Republic of Korea
| | - Jongwook Cho
- Department of Biomedical Science and Engineering, Gwangju Institute of Science and Technology, Gwangju, Republic of Korea
| | - Sunwoo Lee
- Department of Biomedical Science and Engineering, Gwangju Institute of Science and Technology, Gwangju, Republic of Korea
| | - Ji-Young Park
- Department of Biomedical Science and Engineering, Gwangju Institute of Science and Technology, Gwangju, Republic of Korea
| | - Byung-Moon Choi
- Department of Anesthesiology and Pain Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea
| | - Min Sun Kim
- Department of Physiology, Wonkwang University School of Medicine, Iksan, Republic of Korea
| | - Weon Gyeong Kim
- Department of Nursing, Nambu University, Gwangju, Republic of Korea
| | - Min-Cheol Lee
- Department of Pathology, Chonnam National University Medical School, Gwangju, Republic of Korea
| | - Hyoung-Ihl Kim
- Department of Biomedical Science and Engineering, Gwangju Institute of Science and Technology, Gwangju, Republic of Korea
- Department of Neurosurgery, Presbyterian Medical Center, Jeonju, Republic of Korea
- * E-mail:
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Choe G, Park J, Park H, Lee JY. Hydrogel Biomaterials for Stem Cell Microencapsulation. Polymers (Basel) 2018; 10:E997. [PMID: 30960922 PMCID: PMC6403586 DOI: 10.3390/polym10090997] [Citation(s) in RCA: 68] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2018] [Revised: 09/03/2018] [Accepted: 09/03/2018] [Indexed: 12/15/2022] Open
Abstract
Stem cell transplantation has been recognized as a promising strategy to induce the regeneration of injured and diseased tissues and sustain therapeutic molecules for prolonged periods in vivo. However, stem cell-based therapy is often ineffective due to low survival, poor engraftment, and a lack of site-specificity. Hydrogels can offer several advantages as cell delivery vehicles, including cell stabilization and the provision of tissue-like environments with specific cellular signals; however, the administration of bulk hydrogels is still not appropriate to obtain safe and effective outcomes. Hence, stem cell encapsulation in uniform micro-sized hydrogels and their transplantation in vivo have recently garnered great attention for minimally invasive administration and the enhancement of therapeutic activities of the transplanted stem cells. Several important methods for stem cell microencapsulation are described in this review. In addition, various natural and synthetic polymers, which have been employed for the microencapsulation of stem cells, are reviewed in this article.
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Affiliation(s)
- Goeun Choe
- School of Materials Science and Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea.
| | - Junha Park
- School of Materials Science and Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea.
| | - Hansoo Park
- School of Integrative Engineering, Chung-Ang University, Seoul 06974, Korea.
| | - Jae Young Lee
- School of Materials Science and Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea.
- Department of Biomedical Science and Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea.
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45
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Kwon JT, Ham S, Jeon S, Kim Y, Oh S, Cho C. Expression of uncharacterized male germ cell-specific genes and discovery of novel sperm-tail proteins in mice. PLoS One 2017; 12:e0182038. [PMID: 28742876 PMCID: PMC5526581 DOI: 10.1371/journal.pone.0182038] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2017] [Accepted: 07/11/2017] [Indexed: 12/17/2022] Open
Abstract
The identification and characterization of germ cell-specific genes are essential if we hope to comprehensively understand the mechanisms of spermatogenesis and fertilization. Here, we searched the mouse UniGene databases and identified 13 novel genes as being putatively testis-specific or -predominant. Our in silico and in vitro analyses revealed that the expressions of these genes are testis- and germ cell-specific, and that they are regulated in a stage-specific manner during spermatogenesis. We generated antibodies against the proteins encoded by seven of the genes to facilitate their characterization in male germ cells. Immunoblotting and immunofluorescence analyses revealed that one of these proteins was expressed only in testicular germ cells, three were expressed in both testicular germ cells and testicular sperm, and the remaining three were expressed in sperm of the testicular stages and in mature sperm from the epididymis. Further analysis of the latter three proteins showed that they were all associated with cytoskeletal structures in the sperm flagellum. Among them, MORN5, which is predicted to contain three MORN motifs, is conserved between mouse and human sperm. In conclusion, we herein identify 13 authentic genes with male germ cell-specific expression, and provide comprehensive information about these genes and their encoded products. Our finding will facilitate future investigations into the functional roles of these novel genes in spermatogenesis and sperm functions.
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Affiliation(s)
- Jun Tae Kwon
- School of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, Korea
| | - Sera Ham
- School of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, Korea
| | - Suyeon Jeon
- School of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, Korea
| | - Youil Kim
- School of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, Korea
| | - Seungmin Oh
- School of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, Korea
| | - Chunghee Cho
- School of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, Korea
- * E-mail:
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46
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Kim J, Kim J, Lee SH, Kepreotis SV, Yoo J, Chun JS, Hajjar RJ, Jeong D, Park WJ. Cytokine-Like 1 Regulates Cardiac Fibrosis via Modulation of TGF-β Signaling. PLoS One 2016; 11:e0166480. [PMID: 27835665 PMCID: PMC5105950 DOI: 10.1371/journal.pone.0166480] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2016] [Accepted: 10/28/2016] [Indexed: 12/27/2022] Open
Abstract
Cytokine-like 1 (Cytl1) is a secreted protein that is involved in diverse biological processes. A comparative modeling study indicated that Cytl1 is structurally and functionally similar to monocyte chemoattractant protein 1 (MCP-1). As MCP-1 plays an important role in cardiac fibrosis (CF) and heart failure (HF), we investigated the role of Cytl1 in a mouse model of CF and HF. Cytl1 was upregulated in the failing mouse heart. Pressure overload-induced CF was significantly attenuated in cytl1 knock-out (KO) mice compared to that from wild-type (WT) mice. By contrast, adeno-associated virus (AAV)-mediated overexpression of cytl1 alone led to the development of CF in vivo. The endothelial-mesenchymal transition (EndMT) and the transdifferentiation of fibroblasts (FBs) to myofibroblasts (MFBs) have been suggested to contribute considerably to CF. Adenovirus-mediated overexpression of cytl1 was sufficient to induce these two critical CF-related processes in vitro, which were completely abrogated by co-treatment with SB-431542, an antagonist of TGF-β receptor 1. Cytl1 induced the expression of TGF-β2 both in vivo and in vitro. Antagonizing the receptor for MCP-1, C-C chemokine receptor type 2 (CCR2), with CAS 445479-97-0 did not block the pro-fibrotic activity of Cytl1 in vitro. Collectively, our data suggest that Cytl1 plays an essential role in CF likely through activating the TGF-β-SMAD signaling pathway. Although the receptor for Cyt1l remains to be identified, Cytl1 provides a novel platform for the development of anti-CF therapies.
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MESH Headings
- Animals
- Aorta/surgery
- Benzamides/pharmacology
- Cell Transdifferentiation/drug effects
- Constriction, Pathologic/surgery
- Dioxoles/pharmacology
- Disease Models, Animal
- Endomyocardial Fibrosis/genetics
- Endomyocardial Fibrosis/metabolism
- Endomyocardial Fibrosis/pathology
- Fibroblasts/drug effects
- Fibroblasts/metabolism
- Fibroblasts/pathology
- Gene Expression Regulation
- Heart Failure/genetics
- Heart Failure/metabolism
- Heart Failure/pathology
- Humans
- Male
- Mice
- Mice, Knockout
- Myocardial Infarction/genetics
- Myocardial Infarction/metabolism
- Myocardial Infarction/pathology
- Myocardial Reperfusion Injury/genetics
- Myocardial Reperfusion Injury/metabolism
- Myocardial Reperfusion Injury/pathology
- Myofibroblasts/drug effects
- Myofibroblasts/metabolism
- Myofibroblasts/pathology
- Protein Serine-Threonine Kinases/antagonists & inhibitors
- Protein Serine-Threonine Kinases/genetics
- Protein Serine-Threonine Kinases/metabolism
- Receptor, Transforming Growth Factor-beta Type I
- Receptors, CCR2/genetics
- Receptors, CCR2/metabolism
- Receptors, Cytokine/genetics
- Receptors, Cytokine/metabolism
- Receptors, Transforming Growth Factor beta/antagonists & inhibitors
- Receptors, Transforming Growth Factor beta/genetics
- Receptors, Transforming Growth Factor beta/metabolism
- Signal Transduction
- Smad Proteins/genetics
- Smad Proteins/metabolism
- Transforming Growth Factor beta2/genetics
- Transforming Growth Factor beta2/metabolism
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Affiliation(s)
- Jooyeon Kim
- College of Life Sciences, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea
| | - Jihwa Kim
- College of Life Sciences, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea
| | - Seung Hee Lee
- College of Life Sciences, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea
| | - Sacha V. Kepreotis
- The Cardiovascular Research Center, Icahn School of Medicine at Mount Sinai, New York 10029, United States of America
| | - Jimeen Yoo
- The Cardiovascular Research Center, Icahn School of Medicine at Mount Sinai, New York 10029, United States of America
| | - Jang-Soo Chun
- College of Life Sciences, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea
| | - Roger J. Hajjar
- The Cardiovascular Research Center, Icahn School of Medicine at Mount Sinai, New York 10029, United States of America
| | - Dongtak Jeong
- The Cardiovascular Research Center, Icahn School of Medicine at Mount Sinai, New York 10029, United States of America
- * E-mail: (WJP); (DJ)
| | - Woo Jin Park
- College of Life Sciences, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Korea
- * E-mail: (WJP); (DJ)
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