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Lorente-Arevalo A, Orellana G, Ladero M, Bolivar JM. Overcoming Biochemical Limitations of Galactose Oxidase through the Design of a Solid-Supported Self-Sufficient Biocatalyst. Chembiochem 2023; 24:e202300421. [PMID: 37782555 DOI: 10.1002/cbic.202300421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2023] [Revised: 09/08/2023] [Accepted: 10/02/2023] [Indexed: 10/04/2023]
Abstract
Galactose Oxidase (GalOx) has gained significant interest in biocatalysis due to its ability for selective oxidation beyond the natural oxidation of galactose, enabling the production of valuable derivatives. However, the practical application of GalOx has been hindered by the limited availability of active and stable biocatalysts, as well as the inherent biochemical limitations such as oxygen (O2 ) dependency and the need for activation. In this study, we addressed these challenges by immobilizing GalOx into agarose-based and Purolite supports to enhance its activity and stability. Additionally, we identified and quantified the oxygen supply limitation into solid catalysts by intraparticle oxygen sensing showing a trade-off between the amount of protein loaded onto the solid support and the catalytic effectiveness of the immobilized enzyme. Furthermore, we coimmobilized a heme-containing protein along with the enzyme to function as an activator. To evaluate the practical application of the immobilized GalOx, we conducted the oxidation of galactose in an instrumented aerated reactor. The results showcased the efficient performance of the immobilized enzyme in the 8 h reaction cycle. Notably, the GalOx immobilized into dextran sulfate-activated agarose exhibited improved stability, overcoming the need for a soluble activator supply, and demonstrated exceptional performance in galactose oxidation. These findings offer promising prospects for the utilization of GalOx in technical biocatalytic applications.
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Affiliation(s)
- Alvaro Lorente-Arevalo
- FQPIMA Group, Chemical and Materials Engineering Department, Faculty of Chemistry, Complutense University of Madrid, Madrid, 28040, Spain
| | - Guillermo Orellana
- Chemical Optosensors & Applied Photochemistry Group (GSOLFA), Department of Organic Chemistry, Faculty of Chemistry, Complutense University of Madrid, Madrid, 28040, Spain
| | - Miguel Ladero
- FQPIMA Group, Chemical and Materials Engineering Department, Faculty of Chemistry, Complutense University of Madrid, Madrid, 28040, Spain
| | - Juan M Bolivar
- FQPIMA Group, Chemical and Materials Engineering Department, Faculty of Chemistry, Complutense University of Madrid, Madrid, 28040, Spain
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2
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Huang H, Song D, Zhang W, Sun Y, Li Y. One step cascade detection of galactose based on a galactose oxidase-composited peroxidase nanozyme. Anal Methods 2022; 14:3644-3651. [PMID: 36098063 DOI: 10.1039/d2ay01224c] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Abnormal galactose metabolism is the main cause of galactosemia, which makes the accurate and rapid analysis of galactose levels in food and organism the key issue at present. In this study, a novel strategy for one-step galactose determination was proposed based on galactose oxidase and copper-based metal-organic framework complexes (GAOx@MOF) with dual catalytic activities at neutral pH. Typically, GAOx catalyzes the oxidation of the C6 hydroxyl group of D-galactose to generate an aldehyde (D-galactose-hexanedial), and coupled with the reduction of dioxygen to H2O2, which was immediately transformed to ˙OH by mimicking peroxidase activity and at the same time oxidized ABTS to a green product with a clear colorimetric signal. The whole process was completed using one buffer, which simplified the procedure and increased the sensitivity. Moreover, the proposed method can also be used for the quantitative analysis of galactose. It showed a good linear relationship at 20-1000 μM, while the LOD was 6.67 μM. Furthermore, the strategy has been successfully utilized for galactose determination in milk samples, which proved its promising applications in clinical analysis and the food industry.
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Affiliation(s)
- Hui Huang
- College of Food Science and Engineering, Jilin University, Changchun 130025, China
| | - Donghui Song
- College of Food Science and Engineering, Jilin University, Changchun 130025, China
| | - Wenjing Zhang
- College of Food Science and Engineering, Jilin University, Changchun 130025, China
| | - Yue Sun
- Key Lab of Groundwater Resources and Environment of Ministry of Education, Key Lab of Water Resources and Aquatic Environment of Jilin Province, College of New Energy and Environment, Jilin University, Changchun 130021, China, 13654367572.
| | - Yongxin Li
- Key Lab of Groundwater Resources and Environment of Ministry of Education, Key Lab of Water Resources and Aquatic Environment of Jilin Province, College of New Energy and Environment, Jilin University, Changchun 130021, China, 13654367572.
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3
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Duke JA, Paschall AV, Glushka J, Lees A, Moremen KW, Avci FY. Harnessing galactose oxidase in the development of a chemoenzymatic platform for glycoconjugate vaccine design. J Biol Chem 2022; 298:101453. [PMID: 34838818 PMCID: PMC8689215 DOI: 10.1016/j.jbc.2021.101453] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2021] [Revised: 11/18/2021] [Accepted: 11/21/2021] [Indexed: 12/02/2022] Open
Abstract
In the preparation of commercial conjugate vaccines, capsular polysaccharides (CPSs) must undergo chemical modification to generate the reactive groups necessary for covalent attachment to a protein carrier. One of the most common approaches employed for this derivatization is sodium periodate (NaIO4) oxidation of vicinal diols found within CPS structures. This procedure is largely random and structurally damaging, potentially resulting in significant changes in the CPS structure and therefore its antigenicity. Additionally, periodate activation of CPS often gives rise to heterogeneous conjugate vaccine products with variable efficacy. Here, we explore the use of an alternative agent, galactose oxidase (GOase) isolated from Fusarium sp. in a chemoenzymatic approach to generate a conjugate vaccine against Streptococcus pneumoniae. Using a colorimetric assay and NMR spectroscopy, we found that GOase generated aldehyde motifs on the CPS of S. pneumoniae serotype 14 (Pn14p) in a site-specific and reversible fashion. Direct comparison of Pn14p derivatized by either GOase or NaIO4 illustrates the functionally deleterious role chemical oxidation can have on CPS structures. Immunization with the conjugate synthesized using GOase provided a markedly improved humoral response over the traditional periodate-oxidized group. Further, functional protection was validated in vitro by measure of opsonophagocytic killing and in vivo through a lethality challenge in mice. Overall, this work introduces a strategy for glycoconjugate development that overcomes limitations previously known to play a role in the current approach of vaccine design.
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Affiliation(s)
- Jeremy A Duke
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA; Center for Molecular Medicine, University of Georgia, Athens, Georgia, USA
| | - Amy V Paschall
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA; Center for Molecular Medicine, University of Georgia, Athens, Georgia, USA
| | - John Glushka
- Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, USA
| | - Andrew Lees
- Fina Biosolutions, LLC, Rockville, Maryland, USA
| | - Kelley W Moremen
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA; Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, USA
| | - Fikri Y Avci
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA; Center for Molecular Medicine, University of Georgia, Athens, Georgia, USA.
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4
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Šola K, Dean GH, Li Y, Lohmann J, Movahedan M, Gilchrist EJ, Adams KL, Haughn GW. Expression Patterns and Functional Characterization of Arabidopsis Galactose Oxidase-Like Genes Suggest Specialized Roles for Galactose Oxidases in Plants. Plant Cell Physiol 2021; 62:1927-1943. [PMID: 34042158 DOI: 10.1093/pcp/pcab073] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2021] [Revised: 03/10/2021] [Accepted: 05/26/2021] [Indexed: 06/12/2023]
Abstract
Galactose oxidases (GalOxs) are well-known enzymes that have been identified in several fungal species and characterized using structural and enzymatic approaches. However, until very recently, almost no information on their biological functions was available. The Arabidopsis (Arabidopsis thaliana) gene ruby particles in mucilage (RUBY) encodes a putative plant GalOx that is required for pectin cross-linking through modification of galactose (Gal) side chains and promotes cell-cell adhesion between seed coat epidermal cells. RUBY is one member of a family of seven putative GalOxs encoded in the Arabidopsis genome. To examine the function(s) of GalOxs in plants, we studied the remaining six galactose oxidase-like (GOXL) proteins. Like RUBY, four of these proteins (GOXL1, GOXL3, GOXL5 and GOXL6) were found to localize primarily to the apoplast, while GOXL2 and GOXL4 were found primarily in the cytoplasm. Complementation and GalOx assay data suggested that GOXL1, GOXL3 and possibly GOXL6 have similar biochemical activity to RUBY, whereas GOXL5 only weakly complemented and GOXL2 and GOXL4 showed no activity. Members of this protein family separated into four distinct clades prior to the divergence of the angiosperms. There have been recent duplications in Brassicaceae resulting in two closely related pairs of genes that have either retained similarity in expression (GOXL1 and GOXL6) or show expression divergence (GOXL3 and RUBY). Mutant phenotypes were not detected when these genes were disrupted, but their expression patterns suggest that these proteins may function in tissues that require mechanical reinforcements in the absence of lignification.
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Affiliation(s)
- Krešimir Šola
- Department of Botany, University of British Columbia, 6270 University Blvd., Vancouver, British Columbia V6T 1Z4, Canada
- Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, Amsterdam, Noord-Holland 1098 XH, The Netherlands
| | - Gillian H Dean
- Department of Botany, University of British Columbia, 6270 University Blvd., Vancouver, British Columbia V6T 1Z4, Canada
| | - Yi Li
- Department of Botany, University of British Columbia, 6270 University Blvd., Vancouver, British Columbia V6T 1Z4, Canada
- Sjaak van Schie B.V., Maasdijk, Schenkeldijk 8, Zuid-Holland 2676 LD, The Netherlands
| | - Julia Lohmann
- Department of Botany, University of British Columbia, 6270 University Blvd., Vancouver, British Columbia V6T 1Z4, Canada
- Molecular Plant Physiology, Institute for Plant Science and Microbiology, Universität Hamburg, Ohnhorststr. 18, Hamburg 22609, Germany
| | - Mahsa Movahedan
- Department of Botany, University of British Columbia, 6270 University Blvd., Vancouver, British Columbia V6T 1Z4, Canada
- Burnaby Hospital, 3935 Kincaid St, Burnaby, British Columbia V5G 2X6, Canada
| | - Erin J Gilchrist
- Department of Botany, University of British Columbia, 6270 University Blvd., Vancouver, British Columbia V6T 1Z4, Canada
- Anandia Labs, 125-887 Great Northern Way, Vancouver, British Columbia V5T 4T5, Canada
| | - Keith L Adams
- Department of Botany, University of British Columbia, 6270 University Blvd., Vancouver, British Columbia V6T 1Z4, Canada
| | - George W Haughn
- Department of Botany, University of British Columbia, 6270 University Blvd., Vancouver, British Columbia V6T 1Z4, Canada
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5
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Baumgardner DF, Parks WE, Gilbertson JD. Harnessing the active site triad: merging hemilability, proton responsivity, and ligand-based redox-activity. Dalton Trans 2020; 49:960-965. [PMID: 31907502 PMCID: PMC7386000 DOI: 10.1039/c9dt04470a] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Metalloenzymes catalyze many important reactions by managing the proton and electron flux at the enzyme active site. The motifs utilized to facilitate these transformations include hemilabile, redox-active, and so called proton responsive sites. Given the importance of incorporating and understanding these motifs in the area of coordination chemistry and catalysis, we highlight recent milestones in the field. Work incorporating the triad of hemilability, redox-activity, and proton responsivity into single ligand scaffolds will be described.
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Affiliation(s)
- Douglas F Baumgardner
- Department of Chemistry, Western Washington University, Bellingham, Washington 98225, USA.
| | - Wyatt E Parks
- Department of Chemistry, Western Washington University, Bellingham, Washington 98225, USA.
| | - John D Gilbertson
- Department of Chemistry, Western Washington University, Bellingham, Washington 98225, USA.
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6
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Šola K, Gilchrist EJ, Ropartz D, Wang L, Feussner I, Mansfield SD, Ralet MC, Haughn GW. RUBY, a Putative Galactose Oxidase, Influences Pectin Properties and Promotes Cell-To-Cell Adhesion in the Seed Coat Epidermis of Arabidopsis. Plant Cell 2019; 31:809-831. [PMID: 30852555 PMCID: PMC6501606 DOI: 10.1105/tpc.18.00954] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2018] [Revised: 02/15/2019] [Accepted: 03/08/2019] [Indexed: 05/21/2023]
Abstract
Cell-to-cell adhesion is essential for establishment of multicellularity. In plants, such adhesion is mediated through a middle lamella composed primarily of pectic polysaccharides. The molecular interactions that influence cell-to-cell adhesion are not fully understood. We have used Arabidopsis (Arabidopsis thaliana) seed coat mucilage as a model system to investigate interactions between cell wall carbohydrates. Using a forward-genetic approach, we have discovered a gene, RUBY PARTICLES IN MUCILAGE (RUBY), encoding a protein that is annotated as a member of the Auxiliary Activity 5 (AA5) family of Carbohydrate-Active Enzymes (Gal/glyoxal oxidases) and is secreted to the apoplast late in the differentiation of seed coat epidermal cells. We show that RUBY is required for the Gal oxidase activity of intact seeds; the oxidation of Gal in side-chains of rhamnogalacturonan-I (RG-I) present in mucilage-modified2 (mum2) mucilage, but not in wild-type mucilage; the retention of branched RG-I in the seed following extrusion; and the enhancement of cell-to-cell adhesion in the seed coat epidermis. These data support the hypothesis that RUBY is a Gal oxidase that strengthens pectin cohesion within the middle lamella, and possibly the mucilage of wild-type seed coat epidermal cells, through oxidation of RG-I Gal side-chains.
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Affiliation(s)
- Krešimir Šola
- Department of Botany, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - Erin J Gilchrist
- Department of Botany, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - David Ropartz
- Institut National de la Recherche Agronomique (INRA), Nantes 44316, France
| | - Lisa Wang
- Department of Botany, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - Ivo Feussner
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute, University of Goettingen, Goettingen 37077, Germany
- Department of Plant Biochemistry, Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, Goettingen 37077, Germany
| | - Shawn D Mansfield
- Department of Wood Science, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | | | - George W Haughn
- Department of Botany, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
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7
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Abstract
The cell surface is normally covered with sugars that are bound to lipids or proteins. Surface glycoproteins play critically important roles in many cellular events, including cell-cell communications, cell-matrix interactions, and response to environmental cues. Aberrant protein glycosylation on the cell surface is often a hallmark of human diseases such as cancer and infectious diseases. Global analysis of surface glycoproteins will result in a better understanding of glycoprotein functions and the molecular mechanisms of diseases and the discovery of surface glycoproteins as biomarkers and drug targets. Here, an enzyme is exploited to tag surface glycoproteins, generating a chemical handle for their selective enrichment prior to mass spectrometric (MS) analysis. The enzymatic reaction is very efficient, and the reaction conditions are mild, which are well-suited for surface glycoprotein tagging. For biologically triplicate experiments, on average 953 N-glycosylation sites on 393 surface glycoproteins per experiment were identified in MCF7 cells. Integrating chemical and enzymatic reactions with MS-based proteomics, the current method is highly effective to globally and site-specifically analyze glycoproteins only located on the cell surface. Considering the importance of surface glycoproteins, this method is expected to have extensive applications to advance glycoscience.
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Affiliation(s)
- Fangxu Sun
- School of Chemistry and Biochemistry and the Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
| | - Suttipong Suttapitugsakul
- School of Chemistry and Biochemistry and the Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
| | - Ronghu Wu
- School of Chemistry and Biochemistry and the Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
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8
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Nishiyama H, Watanabe T, Inoue Y. Activation of immobilized enzymes by acoustic wave resonance oscillation. Enzyme Microb Technol 2014; 67:27-31. [PMID: 25442945 DOI: 10.1016/j.enzmictec.2014.08.005] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2014] [Revised: 08/12/2014] [Accepted: 08/14/2014] [Indexed: 11/19/2022]
Abstract
Acoustic wave resonance oscillation has been used successfully in the development of methods to activate immobilized enzyme catalysts. In this study, resonance oscillation effects were demonstrated for enzyme reactions on galactose oxidase (GAD), D-amino acid oxidase (DAAO), and L-amino acid oxidase (LAAO), all of which were immobilized covalently on a ferroelectric lead zirconate titanate (PZT) device that could generate thickness-extensional resonance oscillations (TERO) of acoustic waves. For galactose oxidation on immobilized GAD in a microreactor, TERO generation immediately increased enzyme activity 2- to 3-fold. Eliminating TERO caused a slight decrease in the activity, with ∼90% of the enhanced activity retained while the reaction proceeded. Contact of the enhanced enzyme with a galactose-free solution caused almost complete reversion of the activity to the original low level before TERO generation, indicating that, not only TERO-induced GAD activation, but also preservation of the increased activity, required a galactose substrate. Similar activity changes with TERO were observed for enzyme reactions on DAAO and LAAO. Kinetic analysis demonstrated that TERO helped strengthen the interactions of the immobilized enzyme with the reactant substrate and promoted formation of an activation complex.
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Affiliation(s)
- Hiroshi Nishiyama
- Department of Materials Science and Technology, Nagaoka University of Technology, 1603-1 Kamitomioka, Nagaoka 940-2188, Niigata, Japan
| | - Tomoya Watanabe
- Department of Materials Science and Technology, Nagaoka University of Technology, 1603-1 Kamitomioka, Nagaoka 940-2188, Niigata, Japan
| | - Yasunobu Inoue
- Department of Materials Science and Technology, Nagaoka University of Technology, 1603-1 Kamitomioka, Nagaoka 940-2188, Niigata, Japan.
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9
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Staniland S, Yuan B, Giménez-Agulló N, Marcelli T, Willies SC, Grainger DM, Turner NJ, Clayden J. Enzymatic desymmetrising redox reactions for the asymmetric synthesis of biaryl atropisomers. Chemistry 2014; 20:13084-8. [PMID: 25156181 PMCID: PMC4497317 DOI: 10.1002/chem.201404509] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2014] [Indexed: 12/02/2022]
Abstract
Atropisomeric biaryls carrying ortho-hydroxymethyl and formyl groups were made enantioselectively by desymmetrisation of dialdehyde or diol substrates. The oxidation of the symmetrical diol substrates was achieved using a variant of galactose oxidase (GOase), and the reduction of the dialdehydes using a panel of ketoreductases. Either M or P enantiomers of the products could be formed, with absolute configurations assigned by time-dependent DFT calculations of circular dichroism spectra. The differing selectivities observed with different biaryl structures offer an insight into the detailed structure of the active site of the GOase enzyme.
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Affiliation(s)
- Samantha Staniland
- School of Chemistry, University of ManchesterOxford Road, Manchester M13 9PL (UK), Fax: (+44) 161-275-4939
| | - Bo Yuan
- School of Chemistry, University of Manchester, Manchester Institute of Biotechnology131 Princess Street, Manchester M1 7DN (UK), Fax: (+44) 161-275-1311
| | - Nelson Giménez-Agulló
- School of Chemistry, University of ManchesterOxford Road, Manchester M13 9PL (UK), Fax: (+44) 161-275-4939
| | - Tommaso Marcelli
- Dipartimento di Chimica, Materiali e Ingegneria Chimica “Giulio Natta”Politecnico di Milano, via Mancinelli 7, 20131 Milano (Italy)
| | - Simon C Willies
- School of Chemistry, University of Manchester, Manchester Institute of Biotechnology131 Princess Street, Manchester M1 7DN (UK), Fax: (+44) 161-275-1311
| | - Damian M Grainger
- Johnson Matthey Catalysis and Chiral Technologies28 Science Park, Milton Road, Cambridge, CB4 0FP (UK)
| | - Nicholas J Turner
- School of Chemistry, University of Manchester, Manchester Institute of Biotechnology131 Princess Street, Manchester M1 7DN (UK), Fax: (+44) 161-275-1311
| | - Jonathan Clayden
- School of Chemistry, University of ManchesterOxford Road, Manchester M13 9PL (UK), Fax: (+44) 161-275-4939
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Paukner R, Staudigl P, Choosri W, Sygmund C, Halada P, Haltrich D, Leitner C. Galactose oxidase from Fusarium oxysporum--expression in E. coli and P. pastoris and biochemical characterization. PLoS One 2014; 9:e100116. [PMID: 24967652 PMCID: PMC4072685 DOI: 10.1371/journal.pone.0100116] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2013] [Accepted: 05/22/2014] [Indexed: 11/20/2022] Open
Abstract
A gene coding for galactose 6-oxidase from Fusarium oxysporum G12 was cloned together with its native preprosequence and a C-terminal His-tag, and successfully expressed both in Escherichia coli and Pichia pastoris. The enzyme was subsequently purified and characterized. Among all tested substrates, the highest catalytic efficiency (kcat/Km) was found with 1-methyl-β-D-galactopyranoside (2.2 mM−1 s−1). The Michaelis constant (Km) for D-galactose was determined to be 47 mM. Optimal pH and temperature for the enzyme activity were 7.0 and 40°C, respectively, and the enzyme was thermoinactivated at temperatures above 50°C. GalOx contains a unique metalloradical complex consisting of a copper atom and a tyrosine residue covalently attached to the sulphur of a cysteine. The correct formation of this thioether bond during the heterologous expression in E. coli and P. pastoris could be unequivocally confirmed by MALDI mass spectrometry, which offers a convenient alternative to prove this Tyr-Cys crosslink, which is essential for the catalytic activity of GalOx.
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Affiliation(s)
- Regina Paukner
- Department of Food Science and Technology, BOKU-University of Natural Resources and Life Sciences, Vienna, Austria
| | - Petra Staudigl
- Department of Food Science and Technology, BOKU-University of Natural Resources and Life Sciences, Vienna, Austria
| | - Withu Choosri
- Department of Food Technology, Ramkhamhaeng University, Bangkok, Thailand
| | - Christoph Sygmund
- Department of Food Science and Technology, BOKU-University of Natural Resources and Life Sciences, Vienna, Austria
| | - Petr Halada
- Institute of Microbiology v.v.i., Academy of Sciences of the Czech Republic, Prague, Czech Republic
| | - Dietmar Haltrich
- Department of Food Science and Technology, BOKU-University of Natural Resources and Life Sciences, Vienna, Austria
| | - Christian Leitner
- Department of Food Science and Technology, BOKU-University of Natural Resources and Life Sciences, Vienna, Austria
- * E-mail:
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11
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Solomon EI, Heppner DE, Johnston EM, Ginsbach JW, Cirera J, Qayyum M, Kieber-Emmons MT, Kjaergaard CH, Hadt RG, Tian L. Copper active sites in biology. Chem Rev 2014; 114:3659-853. [PMID: 24588098 PMCID: PMC4040215 DOI: 10.1021/cr400327t] [Citation(s) in RCA: 1112] [Impact Index Per Article: 111.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
| | - David E. Heppner
- Department of Chemistry, Stanford University, Stanford, CA, 94305
| | | | - Jake W. Ginsbach
- Department of Chemistry, Stanford University, Stanford, CA, 94305
| | - Jordi Cirera
- Department of Chemistry, Stanford University, Stanford, CA, 94305
| | - Munzarin Qayyum
- Department of Chemistry, Stanford University, Stanford, CA, 94305
| | | | | | - Ryan G. Hadt
- Department of Chemistry, Stanford University, Stanford, CA, 94305
| | - Li Tian
- Department of Chemistry, Stanford University, Stanford, CA, 94305
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12
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Das B, Medhi OK. Synthesis, X-ray crystallography, spectroscopic characterization and spectroscopic/electrochemical evidence of formation of phenoxy free radical in active center analogs of galactose oxidase - [Cu(Salgly)H₂O] and [Cu(Salphenylalanine)H₂O]. Spectrochim Acta A Mol Biomol Spectrosc 2013; 104:352-357. [PMID: 23274262 DOI: 10.1016/j.saa.2012.11.041] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2012] [Accepted: 11/08/2012] [Indexed: 06/01/2023]
Abstract
The formation of phenolate free radical is the factor of high turnover for catalytic activity of galactose oxidase (GO) compared to that by inorganic complexes. A new active center analog of GO, [Cu(II)(Salphenylalanine)H(2)O] have been synthesized and its single crystal X-ray analysis was done. In aqueous surfactant micellar solution chemical oxidation as well as electrochemical oxidation of structural models of galactose oxidase - [Cu(II)Salgly·H(2)O] and [Cu(II)(Salphenylalanine)·H(2)O], have been found to generate free radical originating at the phenolate group. Formation of the free radical have been proved by electron paramagnetic resonance spectroscopy, electronic spectroscopy and electrochemistry.
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Affiliation(s)
- Biva Das
- Department of Chemistry, Gauhati University, Guwahati, Assam 781 014, India
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13
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Liman R, Facey PD, van Keulen G, Dyson PJ, Del Sol R. A laterally acquired galactose oxidase-like gene is required for aerial development during osmotic stress in Streptomyces coelicolor. PLoS One 2013; 8:e54112. [PMID: 23326581 PMCID: PMC3543389 DOI: 10.1371/journal.pone.0054112] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2012] [Accepted: 12/10/2012] [Indexed: 12/25/2022] Open
Abstract
Phylogenetic reconstruction revealed that most Actinobacterial orthologs of S. coelicolor SCO2837, encoding a metal-dependent galactose oxidase-like protein, are found within Streptomyces and were probably acquired by horizontal gene transfer from fungi. Disruption of SCO2837 (glxA) caused a conditional bld phenotype that could not be reversed by extracellular complementation. Studies aimed at characterising the regulation of expression of glxA showed that it is not a target for other bld genes. We provide evidence that glxA is required for osmotic adaptation, although independently from the known osmotic stress response element SigB. glxA has been predicted to be part of an operon with the transcription unit comprising the upstream cslA gene and glxA. However, both phenotypic and expression studies indicate that it is also expressed from an independent promoter region internal to cslA. GlxA displays an in situ localisation pattern similar to that one observed for CslA at hyphal tips, but localisation of the former is independent of the latter. The functional role of GlxA in relation to CslA is discussed.
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Affiliation(s)
- Recep Liman
- Faculty of Science, Department of Genetics, Usak University, Usak, Turkey
| | - Paul D. Facey
- Institute of Life Science, College of Medicine, Swansea University, Singleton Park, Swansea, United Kingdom
| | - Geertje van Keulen
- Institute of Life Science, College of Medicine, Swansea University, Singleton Park, Swansea, United Kingdom
| | - Paul J. Dyson
- Institute of Life Science, College of Medicine, Swansea University, Singleton Park, Swansea, United Kingdom
| | - Ricardo Del Sol
- Institute of Life Science, College of Medicine, Swansea University, Singleton Park, Swansea, United Kingdom
- * E-mail:
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14
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Abstract
The mononuclear copper enzyme, galactose oxidase, has been investigated under steady-state conditions via O(2)-consumption assays using 1-O-methyl-alpha-D-galactopyranoside as the sugar substrate to produce an aldehyde at the C-6 position. The rate-determining step of the oxidative half-reaction was probed through the measurement of substrate and solvent deuterium and O-18 isotope effects on k(cat)/K(m)(O(2)). The reaction conforms to a ping-pong mechanism with the kinetic parameters for the reductive half, k(cat)/K(m)(S) = 8.3 x 10(3) M(-1) s(-1) at 10 degrees C and pH 7.0, comparing favorably to literature values. The oxidative half-reaction yielded a value of k(cat)/K(m)(O(2)) = 2.5 x 10(6) M(-1) s(-1). A substrate deuterium isotope effect of 32 was measured for the k(cat)/K(m)(S), while a smaller, but significant value of 1.6-1.9 was observed on k(cat)/K(m)(O(2)). O-18 isotope effects of 1.0185 with either protiated or deuterated sugar, together with the absence of any solvent isotope effect, lead to the conclusion that hydrogen atom transfer from reduced cofactor to a Cu(II)-superoxo intermediate is fully rate-determining for k(cat)/K(m)(O(2)). The measured O-18 isotope effects provide corroborative evidence for the reactive superoxo species in the dopamine beta-monooxygenase/peptidylglycine alpha-hydroxylating monooxygenase family, as well as providing a frame of reference for copper-superoxo reactivity. The combination of solvent and substrate deuterium isotope effects rules out solvent deuterium exchange into reduced enzyme as the origin of the relatively small substrate deuterium isotope effect on k(cat)/K(m)(O(2)). These data indicate fundamental differences in the hydrogen transfer step from the carbon of substrate vs the oxygen of reduced cofactor during the reductive and oxidative half-reactions of galactose oxidase.
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Affiliation(s)
- Kristi J. Humphreys
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Liviu M. Mirica
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Yi Wang
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Judith P. Klinman
- Department of Chemistry, University of California, Berkeley, California 94720, USA
- Departments of Molecular and Cell Biology, University of California, Berkeley, California 94720, USA
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15
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Abstract
Continuous hybrid cell lines have been generated by the fusion of allogeneically primed murine T lymphocytes with mouse L-cell-derived fibroblasts of the line 613. The resulting hybrid clones express one or more T-cell-specific surface components identifiable by radioiodination of intact cells followed by NP-40 solubilization of membrane proteins and sodium dodecyl sulfate polyacrylamide gel electrophoresis. These markers are stably expressed by the hybrid lines after several months of passage.
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16
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Alberton D, Silva de Oliveira L, Peralta RM, Barbosa-Tessmann IP. Production, purification, and characterization of a novel galactose oxidase fromFusarium acuminatum. J Basic Microbiol 2007; 47:203-12. [PMID: 17518413 DOI: 10.1002/jobm.200610290] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Extra-cellular production of a novel galactose oxidase from Fusarium acuminatum using submerged fermentation was studied. Glucose (1.0% w/v) was used as the sole carbon source. Maximum galactose oxidase production (approximately 4.0 U/ml) was obtained when fermentation was carried out at 25 degrees C, with orbital shaking (100 rpm) and an initial medium of pH 7.0, for 96 h, using a 2% (v/v) inoculum made from a homogenized four-day-old liquid culture, in the presence of copper, manganese, and magnesium. The enzyme was purified by one-step affinity chromatography, with a recovery of 42% of the initial activity. The purified enzyme ran as a single band of 66 kDa in SDS-PAGE. Optimal pH and temperature for the enzyme activity were 8.0 and 30 degrees C, respectively. The enzyme was thermoinactivated at temperatures above 60 degrees C. The purified enzyme was active toward various substrates, including galactose, dihydroxyacetone, guar gum, lactose, melibiose, methyl-galactopyranoside, and raffinose. SDS was an inhibitor but EDTA, Tween 80, NH(4)(+), Na(+), Mg(2+), K(+), and glycerol were not. The Michaelis-Menten constant (K(m)) for galactose was estimated to be 16.2 mM, while maximal velocity (V(max)) was 0.27 micromol of H(2)O(2) . ml(-1) . min(-1).
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Affiliation(s)
- Dayane Alberton
- Universidade Estadual de Maringá, Departamento de Bioquímica, Maringá, PR, Brazil
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17
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Rogers MS, Tyler EM, Akyumani N, Kurtis CR, Spooner RK, Deacon SE, Tamber S, Firbank SJ, Mahmoud K, Knowles PF, Phillips SEV, McPherson MJ, Dooley DM. The stacking tryptophan of galactose oxidase: a second-coordination sphere residue that has profound effects on tyrosyl radical behavior and enzyme catalysis. Biochemistry 2007; 46:4606-18. [PMID: 17385891 PMCID: PMC2532978 DOI: 10.1021/bi062139d] [Citation(s) in RCA: 87] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The function of the stacking tryptophan, W290, a second-coordination sphere residue in galactose oxidase, has been investigated via steady-state kinetics measurements, absorption, CD and EPR spectroscopy, and X-ray crystallography of the W290F, W290G, and W290H variants. Enzymatic turnover is significantly slower in the W290 variants. The Km for D-galactose for W290H is similar to that of the wild type, whereas the Km is greatly elevated in W290G and W290F, suggesting a role for W290 in substrate binding and/or positioning via the NH group of the indole ring. Hydrogen bonding between W290 and azide in the wild type-azide crystal structure are consistent with this function. W290 modulates the properties and reactivity of the redox-active tyrosine radical; the Y272 tyrosyl radicals in both the W290G and W290H variants have elevated redox potentials and are highly unstable compared to the radical in W290F, which has properties similar to those of the wild-type tyrosyl radical. W290 restricts the accessibility of the Y272 radical site to solvent. Crystal structures show that Y272 is significantly more solvent exposed in the W290G variant but that W290F limits solvent access comparable to the wild-type indole side chain. Spectroscopic studies indicate that the Cu(II) ground states in the semireduced W290 variants are very similar to that of the wild-type protein. In addition, the electronic structures of W290X-azide complexes are also closely similar to the wild-type electronic structure. Azide binding and azide-mediated proton uptake by Y495 are perturbed in the variants, indicating that tryptophan also modulates the function of the catalytic base (Y495) in the wild-type enzyme. Thus, W290 plays multiple critical roles in enzyme catalysis, affecting substrate binding, the tyrosyl radical redox potential and stability, and the axial tyrosine function.
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Affiliation(s)
- Melanie S. Rogers
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, MT 59717, USA
| | - Ejan M. Tyler
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, MT 59717, USA
| | - Nana Akyumani
- Astbury Centre for Structural Molecular Biology & Institute of Molecular and Cellular Biology, University of Leeds, Leeds, LS2 9JT, UK
| | - Christian R. Kurtis
- Astbury Centre for Structural Molecular Biology & Institute of Molecular and Cellular Biology, University of Leeds, Leeds, LS2 9JT, UK
| | - R. Kate Spooner
- Astbury Centre for Structural Molecular Biology & Institute of Molecular and Cellular Biology, University of Leeds, Leeds, LS2 9JT, UK
| | - Sarah E. Deacon
- Astbury Centre for Structural Molecular Biology & Institute of Molecular and Cellular Biology, University of Leeds, Leeds, LS2 9JT, UK
| | - Sunita Tamber
- Astbury Centre for Structural Molecular Biology & Institute of Molecular and Cellular Biology, University of Leeds, Leeds, LS2 9JT, UK
| | - Susan J. Firbank
- Astbury Centre for Structural Molecular Biology & Institute of Molecular and Cellular Biology, University of Leeds, Leeds, LS2 9JT, UK
| | - Khaled Mahmoud
- Astbury Centre for Structural Molecular Biology & Institute of Molecular and Cellular Biology, University of Leeds, Leeds, LS2 9JT, UK
| | - Peter F. Knowles
- Astbury Centre for Structural Molecular Biology & Institute of Molecular and Cellular Biology, University of Leeds, Leeds, LS2 9JT, UK
| | - Simon E. V. Phillips
- Astbury Centre for Structural Molecular Biology & Institute of Molecular and Cellular Biology, University of Leeds, Leeds, LS2 9JT, UK
| | - Michael J. McPherson
- Astbury Centre for Structural Molecular Biology & Institute of Molecular and Cellular Biology, University of Leeds, Leeds, LS2 9JT, UK
| | - David M. Dooley
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, MT 59717, USA
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18
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Abstract
A systematic in silico approach is employed to generate an accurate model for the catalytically important oxidized state of galactose oxidase (GO) using spectroscopically calibrated hybrid density-functional theory. GO displays three distinct oxidation states: oxidized [Cu(II)-Y*], semireduced [Cu(II)-Y], and fully reduced [Cu(I)-Y], but only the [Cu(II)-Y*] and the [Cu(I)-Y] states are assumed to be involved in catalysis. We have developed multiple models for the oxidized [Cu(II)-Y*] state, whose structure has not yet been fully characterized. These models were evaluated by comparison of calculated and experimental structural data, singlet-triplet energy gaps, and electronic transitions for the antiferromagnetically coupled oxidized [Cu(II)-Y*] state. An extended model system that includes explicit solvent molecules and second coordination sphere residues (R330, Y405, and W290) is essential to obtain the correct electronic structure of the active site. The model with all the residues that have been shown to affect the radical stability and catalysis resulted in a singlet ground state with the radical centered on the Y272-C228 cofactor. The optimized structure of the oxidized GO [Cu(II)-Y*] reveals a five-coordinated square pyramidal coordination geometry very similar to [Cu(II)-Y] with considerably different Cu-ligand distances. The hydrogen-bonding interactions involving Y495 modulates the spin density distribution and the singlet-triplet energy gaps. The final model as the most reasonable structure of the oxidized [Cu(II)-Y*] state in GO reproduces the spectroscopic signature of oxidized GO.
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Affiliation(s)
- Dalia Rokhsana
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana 59717, USA
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19
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Shimaoka H, Kuramoto H, Furukawa JI, Miura Y, Kurogochi M, Kita Y, Hinou H, Shinohara Y, Nishimura SI. One-Pot Solid-Phase Glycoblotting and Probing by Transoximization for High-Throughput Glycomics and Glycoproteomics. Chemistry 2007; 13:1664-73. [PMID: 17225232 DOI: 10.1002/chem.200601613] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
The development of rapid and efficient methods for high-throughput protein glycomics is of growing importance because the glycoform-focused reverse proteomics/genomics strategy will greatly contribute to the discovery of novel biomarkers closely related to cellular development, differentiation, growth, and aging as well as a variety of diseases such as cancers and viral infection. Recently, we communicated that rapid and efficient purification of carbohydrates can be achieved by employing sugar-specific chemical ligation with aminooxy-functionalized polymers, which we termed "glycoblotting" (see S.-I. Nishimura et al., Angew. Chem. 2005, 117, 93-98; Angew. Chem. Int. Ed. 2005, 44, 91-96). The chemoselective blotting of oligosaccharides present in crude biological materials onto synthetic polymers relies on the unique oxime-bond formation between aminooxy group displayed on the supporting materials and aldehyde/ketone group at the reducing terminal of all oligosaccharides, thus enabling highly selective and rapid oligosaccharide purification. Aiming to improve the detection sensitivity of the released oligosaccharides, we introduce here a novel strategy for one-pot solid-phase glycoblotting and probing by transoximization. We found that oligosaccharides captured by the polymer supports via the oxime bond can be released in the presence of excess O-substituted aminooxy derivatives in a weakly acidic condition. The released oligosaccharides could be recovered as newly formed oxime derivatives of the O-substituted aminooxy compound added, thus demonstrating the simultaneous releasing and probing. In addition, we synthesized a novel aminooxy-functionalized monomer, N-[2-[2-(2-tert-butoxycarbonylaminooxyacetylamino-ethoxy)ethoxy]ethyl]-2-methacrylamide, which allows for the large-scale preparation of a versatile polymer characterized by its high stability, high blotting capacity, and easy use. The one-pot protocol allowed to profile 23 kinds of N-glycan chains of human serum glycoproteins. This concept was further applied for the glycopeptides analysis in a crude mixture followed by galactose oxidase treatment to generate free aldehyde group at the non-reducing terminal of oligosaccharide moiety of glycopeptides. Our technique may be implemented in existing biochemistry and molecular diagnostics laboratories because enriched oligosaccharides and glycopeptides by solid-phase transoximization with high-sensitive labeling reagents are widely applicable in a variety of common analytical methods using two-dimensional HPLC, LC/MS, and capillary electrophoresis as well as modern mass spectrometry.
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Affiliation(s)
- Hideyuki Shimaoka
- Graduate School of Advanced Life Science, Frontier Research Center for the Post-Genome Science and Technology, Hokkaido University, N21, W11 Sapporo 001-0021, Japan
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20
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Callahan JW, Skomorowski MA. Diagnosis of Krabbe disease by use of a natural substrate. Methods Mol Biol 2006; 347:321-30. [PMID: 17072020 DOI: 10.1385/1-59745-167-3:321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
This chapter describes in detail a practical procedure for the preparation of radiolabeled galactocerebroside and its use in the assay of galactocerebrosidase (GalCase), the enzyme deficient in globoid cell leukodystrophy (Krabbe disease). The reference range for leukocytes and fibroblasts is 0.9-4.4 and 8-36 nmoles substrate hydrolyzed per hour per milligram of protein, respectively. Because of its low abundance this enzyme is difficult to assay in certain situations, such as prenatal diagnosis by chorionic villus sampling. To obviate this a modified assay is used where only the radiolabeled substrate is included in the incubation. This provides a clear separation between affected samples and unaffected controls. The methods detailed here should be reproducible in any laboratory.
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Affiliation(s)
- John W Callahan
- Genetic-Metabolic Laboratory, Department of Pediatric Laboratory Medicine, The Hospital for Sick Children, University of Toronto, Toronto, Canada
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21
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van Wijk A, Siebum A, Schoevaart R, Kieboom T. Enzymatically oxidized lactose and derivatives thereof as potential protein cross-linkers. Carbohydr Res 2006; 341:2921-6. [PMID: 17056020 DOI: 10.1016/j.carres.2006.10.004] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2006] [Revised: 09/16/2006] [Accepted: 10/03/2006] [Indexed: 10/24/2022]
Abstract
The enzyme galactose oxidase [EC 1.1.3.9] was applied to convert lactose, lactylamine and lactobionic acid into their corresponding 6'-aldehyde compounds. The potential protein cross-linking ability of these oxidized lactose and derivatives thereof was investigated using n-butylamine as the model compound. First, oxidized lactose gave double Maillard reaction products that were stable under mild alkaline conditions. Second, reductive amination of lactose followed by enzymatic oxidation gave cross-links that were stable under both neutral and alkaline conditions. Third, stable cross-links were obtained through enzymatic oxidation and amidation of lactobionic acid.
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Affiliation(s)
- Arjan van Wijk
- Leiden Institute of Chemistry, Leiden University, PO Box 9502, 2300 RA Leiden, The Netherlands.
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22
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Whittaker MM, Whittaker JW. Streptomyces coelicolor oxidase (SCO2837p): A new free radical metalloenzyme secreted by Streptomyces coelicolor A3(2). Arch Biochem Biophys 2006; 452:108-18. [PMID: 16884677 DOI: 10.1016/j.abb.2006.06.020] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2006] [Revised: 06/10/2006] [Accepted: 06/20/2006] [Indexed: 11/23/2022]
Abstract
The SCO2837 open-reading frame is located within the conserved central core region of the Streptomyces coelicolor A3(2) genome, which contains genes required for essential cellular functions. SCO2837 protein (SCO2837p) expressed by Pichia pastoris is a copper metalloenzyme, catalyzing the oxidation of simple alcohols to aldehydes and reduction of dioxygen to hydrogen peroxide. Distinct optical absorption spectra are observed for oxidized and one-electron reduced holoenzyme, and a free radical EPR signal is present in the oxidized apoprotein, characteristic of the Tyr-Cys redox cofactor previously reported for fungal secretory radical copper oxidases, galactose oxidase and glyoxal oxidase, with which it shares weak sequence similarity. SCO2837p was detected in the growth medium of both S. coelicolor and a recombinant expression host (Streptomyces lividans TK64) by Western blotting, with the expression level dependent on the nature of the carbon source. This represents the first characterized example of a prokaryotic radical copper oxidase.
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Affiliation(s)
- Mei M Whittaker
- Department of Environmental and Biomolecular Systems, Oregon Health and Science University, Beaverton, OR 97006-8291, USA
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23
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Jeon SI, Hong JW, Yoon HC. A new immunosensing method by galactose oxidase-mediated electrocatalysis using a virtual beaker array. Biotechnol Lett 2006; 28:1401-8. [PMID: 16858510 DOI: 10.1007/s10529-006-9102-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2006] [Accepted: 05/10/2006] [Indexed: 11/25/2022]
Abstract
We report a novel and convenient method for the determination of glycoproteins, especially antibodies, using galactose oxidase (GAO) on the basis of the contents of galactosyl and N-acetylgalactosaminyl residues in carbohydrate chains of glycoproteins. GAO converts galactose residues to their corresponding aldehyde and H(2)O(2), the latter being electroactive and quantifiable by DC amperometry. The method does not require processes such as antibody labeling or the use of enzyme-tagged secondary antibodies. For an array-type immunosensing, the platform surface for antigen immobilization was specially designed by using differentiated surface wetting property of hydrophobic and hydrophilic patterns. We patterned the hydrophobic surface of the poly(dimethylsiloxane) substrate by microcontact printing with the poly(amidoamine) dendrimer ink, providing hydrophilic patterns on a hydrophobic base substrate. By applying aqueous solution on the patterned surface, an array of free-standing water droplets was made. With the prepared virtual beaker array, electrochemical immunosensing was performed by using anti-dinitrophenyl-IgG as a model target protein. From immunoassay with GAO-mediated electrocatalysis, a good correlation in amperometric signal with the target IgG was registered. The total assay time was about 20 min, including antibody recognition and signal registration.
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Affiliation(s)
- Sung Il Jeon
- Department of Biotechnology, Ajou University, Suwon 443749, Korea
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24
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Fortelius M, Mattjus P. Galactose oxidase action on galactose containing glycolipids--a fluorescence method. Chem Phys Lipids 2006; 142:103-10. [PMID: 16647698 DOI: 10.1016/j.chemphyslip.2006.03.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2006] [Revised: 03/15/2006] [Accepted: 03/15/2006] [Indexed: 12/31/2022]
Abstract
Features that alter the glycolipid sugar headgroup accessibility at the membrane interface have been studied in bilayer lipid model vesicles using a fluorescence technique with the enzyme galactose oxidase. The effects on oxidation caused by variation in the hydrophobic moiety of galactosylceramide or the membrane environment for galactosylceramide, monogalactosyldiacylglycerol and digalactosyldiacylglycerol were studied. For this study we combined the galactose oxidase method for determining the oxidizability of galactose containing glycolipids, and the fluorescence method for determining enzymatic hydrogen peroxide production. Exposed galactose residues with a free hydroxymethyl group at position 6 in the headgroup of glycolipids were oxidized with galactose oxidase and subsequently the resultant hydrogen peroxide was determined by a combination of horseradish peroxidase and 10-acetyl-3,7-dihydroxyphenoxazine (Amplex Red). Amplex Red reacts with hydrogen peroxide in the presence of horseradish peroxidase with a 1:1 stoichiometry to form resorufin. With this coupled enzyme approach it is also possible to determine the galactolipid transbilayer membrane distribution (inside-outside) in bilayer vesicles.
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Affiliation(s)
- Michaela Fortelius
- Department of Biochemistry and Pharmacy, Abo Akademi University, Artillerigatan 6A, FI-20520 Abo/Turku, Finland
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25
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Abstract
GO (galactose oxidase; E.C. 1.1.3.9) is a monomeric 68 kDa enzyme that contains a single copper ion and an amino acid-derived cofactor. The enzyme is produced by the filamentous fungus Fusarium graminearum as an extracellular enzyme. The enzyme has been extensively studied by structural, spectroscopic, kinetic and mutational approaches that have provided insight into the catalytic mechanism of this radical enzyme. One of the most intriguing features of the enzyme is the post-translational generation of an organic cofactor from active-site amino acid residues. Biogenesis of this cofactor involves the autocatalytic formation of a thioether bond between Cys-228 and Tyr-272, the latter being one of the copper ligands. Formation of this active-site feature is closely linked to the loss of an N-terminal 17 amino acid prosequence. When copper and oxygen are added to this pro-form of GO (pro GO), purified in copper-free conditions from the heterologous host Aspergillus nidulans, mature GO is formed by an autocatalytic process. Structural comparison of pro GO with mature GO reveals overall structural similarity, but with some regions showing significant local differences in main-chain position. Some side chains of the active-site residues differ significantly from their positions in the mature enzyme. These structural effects of the prosequence suggest that it may act as an intramolecular chaperone to provide an open active-site structure conducive to copper binding and chemistry associated with cofactor formation. The prosequence is not mandatory for processing, as a recombinant form of GO lacking this region and purified under copper-free conditions can also be processed in an autocatalytic copper- and oxygen-dependent manner.
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Affiliation(s)
- Susan Firbank
- Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, UK
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26
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Abstract
The reactivities of two copper(II)-phenoxyl analogues of the oxidized, active form of the metalloenzyme galactose oxidase, [1tBu2]+ and [2tBu2]+, have been studied using the substrates benzyl alcohol and 9,10-dihydroanthracene, for a total of four reactions. The reaction stoichiometries in all cases show a 2:1 ratio of oxidant to benzaldehyde or anthracene product, indicating that [1tBu2]+ and [2tBu2]+ behave ultimately as only one-electron oxidants, but the reaction kinetics each indicate that only a single copper(II)-phenoxyl complex is involved in the rate-determining step. For each substrate, rate laws indicate that [1tBu2]+ and [2tBu2]+ react by different mechanisms: one proceeds by a simple bimolecular reaction, while the other first enters into a substrate-binding equilibrium before subsequently reacting by an intramolecular reaction. The reactions proceeding by the latter mechanism have faster overall rates, which correlates to a lower entropic barrier for the substrate-binding mechanism. Correlation of the reaction rates with the C-H bond dissociation energies of substrates as well as significant deuterium kinetic isotope effects indicates that the rate-determining steps involve hydrogen atom abstraction from the activated C-H bonds. A variable-temperature study (268-308 K) of the nonclassical KIE of the [1tBu2]+/benzyl alcohol reaction (kH/kD = 15 at 298 K) failed to show evidence for quantum tunneling. The rapid sequence by which a second 1 equiv of copper(II)-phenoxyl oxidant completes the reaction after the rate- and product-determining hydrogen atom abstraction step cannot be probed kinetically. Comparisons are made to the reactivities of other copper(II)-phenoxyl complexes reported in the literature and to galactose oxidase itself.
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Affiliation(s)
- Russell C Pratt
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
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27
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Abstract
The novel ligand 2,6-bis[S-(3,5-di-tert-butyl-2-hydroxyphenyl)sulfanylmethyl]pyridine (H(2)L1) and its copper(II) complex Cu(L1), 1, were synthesized with the aim of constructing a model of the active site of the enzyme galactose oxidase (GOase). Cyclic voltammetry studies show that 1 undergoes ligand-based quasi-reversible oxidations (phenolate/phenoxyl) and reversible metal-based reduction [copper(II)/copper(I)] similar to those of GOase, but at potentials much higher and lower, respectively, than those found for the enzyme. At room temperature, spectrophotometric titrations show that 1 binds strongly to 1 equiv of pyridine. In frozen solutions (77 K), 1 quantitatively binds both pyridine and ethers (e.g., 1,4-dioxane) as assessed by X- and Q-band EPR spectroscopy. Profound shifts in the pattern of g values result, from rhombic (g(1) > g(2) > g(3)) in toluene to either inverted axial patterns (g(1) = g(2) >> g(3)) in the presence of ethers or a near-axial pattern (g(1) >> g(2) > g(3)) in the presence of pyridine. Crystallographic analyses of the parent complex 1.MeCN, the dioxane-bridged dimer [(Cu(L1))(2)((mu-1,4)-1,4-dioxane)].(Me(2)CO)(2) (2), and the pyridine complex [Cu(L1)(pyridine)] (3) show that the pyridine and ether ligands bond to copper at a sixth octahedral position left vacant by the pentadentate NO(2)S(2) coordination mode of L1(2-) and induce perturbations of its geometry. Hybrid DFT calculations based on the crystallographic coordinates combined with perturbation theory expressions for the g values of a d(9) system correlate the results from EPR spectroscopy to the proportions of d(x)(2)(-)(y)(2) and d(z)(2) character in the relevant copper-centered unoccupied molecular orbital. The combination of spectroscopic, structural, and computational results for this set of copper(II) complexes provides a demonstrative example of the physical phenomena underlying rhombic EPR spectra of d(9) systems.
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Affiliation(s)
- Russell C Pratt
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
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28
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Abstract
Galactose oxidase is a free radical metalloenzyme containing a novel metalloradical complex, comprised of a protein radical coordinated to a copper ion in the active site. The unusually stable protein radical is formed from the redox-active side chain of a cross-linked tyrosine residue (Tyr-Cys). Biochemical studies on galactose oxidase have revealed a new class of oxidation mechanisms based on this free radical coupled-copper catalytic motif, defining an emerging family of enzymes, the radical-copper oxidases. Isotope kinetics and substrate reaction profiling have provided insight into the elementary steps of substrate oxidation in these enzymes, complementing structural studies on their active site. Galactose oxidase is remarkable in the extent to which free radicals are involved in all aspects of the enzyme function: serving as a key feature of the active site structure, defining the characteristic reactivity of the complex, and directing the biogenesis of the Tyr-Cys cofactor during protein maturation.
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Affiliation(s)
- James W Whittaker
- Department of Environmental and Biomolecular Systems, OGI School of Science and Engineering, Oregon Health and Science University, 20000 N.W. Walker Road, Beaverton, OR 97006, USA.
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29
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Abstract
The fungal enzyme galactose oxidase is a radical copper oxidase that catalyzes the oxidation of a broad range of primary alcohols to aldehydes. Previous mechanistic studies have revealed a large substrate deuterium kinetic isotope effect on galactose oxidase turnover whose magnitude varies systematically over a series of substituted benzyl alcohols, reflecting a change in the character of the transition state for substrate oxidation. In this work, these detailed mechanistic studies have been extended using a series of stereospecifically monodeuterated substrates, including 1-O-methyl-alpha-D-galactose as well as unsubstituted benzyl alcohol and 3- and 4-methoxy and 4-nitrobenzyl derivatives. Synthesis of all of these substrates was based on oxidation of the alpha,alpha'-dideuterated alcohol to the corresponding (2)H-labeled aldehyde, followed by asymmetric hydroboration using alpha-pinene/9-BBN reagents to form the stereoisomeric alcohols. Products from enzymatic oxidation of each of these substrates were characterized by mass spectrometry to quantitatively evaluate the substrate dependence of the stereoselectivity of the catalytic reaction. For all of these substrates, the selectivity for pro-S hydrogen abstraction was at least 95%. This selectivity appears to be a direct consequence of constraints imposed by the enzyme on the orientation of substrates bearing a branched beta-carbon. Steady state analysis of kinetic isotope effects on V/K has resolved individual contributions from primary and alpha-secondary kinetic isotope effects in the reaction, providing a test for the involvement of an electron transfer redox equilibrium in the oxidation process. Multiple isotope effect measurements utilizing simultaneous labeling of the substrate and solvent have contributed to refinement of the relation between proton transfer and hydrogen atom transfer steps in substrate oxidation.
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Affiliation(s)
- Stefan G Minasian
- Department of Environmental and Biomolecular Systems, OGI School of Science and Engineering, Oregon Health and Sciences University, 20000 Northwest Walker Road, Beaverton, Oregon 97006, USA
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30
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Michel F, Thomas F, Hamman S, Saint-Aman E, Bucher C, Pierre JL. Galactose Oxidase Models: Solution Chemistry, and Phenoxyl Radical Generation Mediated by the Copper Status. Chemistry 2004; 10:4115-25. [PMID: 15352095 DOI: 10.1002/chem.200400099] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Galactose oxidase (GO) is an enzyme that catalyzes two-electron oxidations. Its active site contains a copper atom coordinated to a tyrosyl radical, the biogenesis of which requires copper and dioxygen. We have recently studied the properties of electrochemically generated mononuclear Cu(II)-phenoxyl radical systems as model compounds of GO. We present here the solution chemistry of these ligands under various copper and dioxygen statuses: N(3)O ligands first chelate Cu(II), leading, in the presence of base, to [Cu(II)(ligand)(CH(3)CN)](+) complexes (ortho-tert-butylated ligands) or [(Cu(II))(2)(ligand)(2)](2+) complexes (ortho-methoxylated ligands). Excess copper(II) then oxidizes the complex to the corresponding mononuclear Cu(II)-phenoxyl radical species. N(2)O(2) tripodal ligands, in the presence of copper(II), afford directly a copper(II)-phenoxyl radical species. Addition of more than two molar equivalents of copper(II) affords a Cu(II)-bis(phenoxyl) diradical species. The donor set of the ligand directs the reaction towards comproportionation for ligands possessing an N(3)O donor set, while disproportionation is observed for ligands possessing an N(2)O(2) donor set. These results are discussed in the light of recent results concerning the self-processing of GO. A path involving copper(II) disproportionation is proposed for oxidation of the cross-linked tyrosinate of GO, supporting the fact that both copper(I) and copper(II) activate the enzyme.
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Affiliation(s)
- Fabien Michel
- Laboratoire de Chimie Biomimétique, LEDSS, UMR CNRS 5616, Université J. Fourier, BP 53, 38041 Grenoble Cedex 9, France
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31
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Deacon SE, Mahmoud K, Spooner RK, Firbank SJ, Knowles PF, Phillips SEV, McPherson MJ. Enhanced Fructose Oxidase Activity in a Galactose Oxidase Variant. Chembiochem 2004; 5:972-9. [PMID: 15239055 DOI: 10.1002/cbic.200300810] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Galactose oxidase (GO; EC 1.1.3.9) catalyses the oxidation of a wide range of primary alcohols including mono-, oligo- and polysaccharides. High-resolution structures have been determined for GO, but no structural information is available for the enzyme with bound substrate or inhibitor. Previously, computer-aided docking experiments have been used to develop a plausible model for interactions between GO and the D-galactose substrate. Residues implicated in such interactions include Arg330, Gln406, Phe464, Phe194 and Trp290. In the present study we describe an improved expression system for recombinant GO in the methylotrophic yeast Pichia pastoris. We use this system to express variant proteins mutated at Arg330 and Phe464 to explore the substrate binding model. We also demonstrate that the Arg330 variants display greater fructose oxidase activity than does wild-type GO.
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Affiliation(s)
- Sarah E Deacon
- Astbury Centre for Structural Molecular Biology, School of Biochemistry and Molecular Biology, University of Leeds, Leeds, LS2 9JT, UK
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32
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Wilkinson D, Akumanyi N, Hurtado-Guerrero R, Dawkes H, Knowles PF, Phillips SEV, McPherson MJ. Structural and kinetic studies of a series of mutants of galactose oxidase identified by directed evolution. Protein Eng Des Sel 2004; 17:141-8. [PMID: 15047910 DOI: 10.1093/protein/gzh018] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Galactose oxidase (GO; E.C. 1.1.3.9) is a copper- containing enzyme that oxidizes a range of primary alcohols to aldehydes. This broad substrate specificity is reflected in a high K(M) for substrates. Directed evolution has previously been used to select variants of GO that exhibit enhanced expression and kinetic properties. In assays using unpurified enzyme samples, the variant C383S displayed a 5-fold lower K(M) than wild-type GO. In the present study, we have constructed, expressed, purified and characterized a number of single, double and triple mutants at residues Cys383, Tyr436 and Val494, identified in one of the directed evolution studies, to examine their relative contributions to improved catalytic activity of GO. We report kinetic studies on the various mutant enzymes. In addition, we have determined the three-dimensional structure of the C383S variant. As with many mutations identified in directed evolution experiments, the availability of structural information does not provide a definitive answer to the reason for the improved K(M) in the C383S variant protein.
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Affiliation(s)
- D Wilkinson
- Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, UK
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33
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Sun L, Yagasaki M. Screen for oxidases by detection of hydrogen peroxide with horseradish peroxidase. Methods Mol Biol 2003; 230:177-82. [PMID: 12824581 DOI: 10.1385/1-59259-396-8:177] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Lianhong Sun
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, USA
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34
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Abstract
Four tripodal ligands with an N(3)O coordination sphere were synthesized: (2-hydroxy-3-tert-butyl-5-nitrobenzyl)bis(2-pyridylmethyl)amine (LNO(2)H), (2-hydroxy-3-tert-butyl-5- fluorobenzyl)bis(2-pyridylmethyl)amine (LFH), (2-hydroxy-3,5-di-tert-butylbenzyl)bis(2-pyridylmethyl)amine (LtBuH) and (2-hydroxy-3-tert-butyl-5-methoxybenzyl)bis(2-pyridylmethyl)amine (LOMeH). Their square-pyramidal copper(II) complexes, in which the phenol subunit occupies an axial position, were prepared and characterized by X-ray crystallography and UV/Vis and EPR spectroscopy. The phenolate moieties of the copper(II) complexes of LtBuH and LOMeH were electrochemically oxidized to phenoxyl radicals. These complexes are EPR-active (S=1), highly stable (k(decay)=0.008 min(-1) for [Cu(II)(LOMe(.))(CH(3)CN)](2+)) and stoichiometrically oxidise benzyl alcohol. Two additional tripodal ligands providing an N(2)O(2) coordination sphere were also studied: (2-pyridylmethyl)(2-hydroxy-3-tert-butyl-5-methoxybenzyl)(2-hydroxy-3-tert-butyl-5-nitrobenzyl)amine (L'OMeNO(2)H(2)) and (2-pyridylmethyl)bis(2-hydroxy-3-tert-butyl-5- methoxy)benzylamine (L'OMe(2)H(2)). Their copper(II) complexes were isolated as dimers ([Cu(2II)(L'OMe(2))(2)], [Cu(2II)(L'OMeNO(2))(2)]) that are converted to monomers on addition of pyridine. The complexes were investigated by X-ray crystallography and UV/Vis and EPR spectroscopy. Their one-electron electrochemical oxidation leads to copper(II)-phenoxyl systems that are less stable than those of the N(3)O complexes. The N(2)O(2) complexes are more reactive than the N(3)O analogues: they aerobically oxidize benzyl alcohol to benzaldehyde at a higher rate, as well as ethanol to acetaldehyde (40-80 turnovers).
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Affiliation(s)
- Aurélie Philibert
- Laboratoire de Chimie Biomimétique, LEDSS, UMR CNRS 5616 Université J Fourier, BP 53, 38041, Grenoble Cedex 9, France
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35
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Abstract
One-electron oxidation of two structurally similar CuII-diphenolate complexes, 1 and 2, creates EPR-silent CuII-phenoxyl complexes [1]+ and [2]+ that mimic the oxidized form of the enzyme galactose oxidase (GOase). Both model complexes display novel NIR absorptions assigned to phenolate-phenoxyl charge transfer that resemble a tyrosinate-tyrosyl charge-transfer band observed in the enzymatic system. [1]+ and [2]+ react with benzyl alcohol to form 0.5 equivs of benzaldehyde per complex; biomimetic reduction to CuI-phenol complexes is not observed, but such species may exist transiently. Initial kinetic studies show that [2]+ reacts faster with benzyl alcohol than does [1]+, despite being a significantly weaker oxidant (DeltaE degrees = 370 mV). This acceleration is ascribed to mechanistic differences: [2]+ appears to bind substrate prior to the rate-determining step. Large, nonclassical kinetic isotope effects confirm C-H bond cleavage as the rate-determining step in the reactions of both [1]+ and [2]+ with benzyl alcohol, as is the case for GOase.
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Affiliation(s)
- Russell C Pratt
- Department of Chemistry, Stanford University, Stanford, California 94305-5080, USA
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36
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Abstract
Galactose oxidase is a copper metalloenzyme containing a novel protein-derived redox cofactor in its active site, formed by cross-linking two residues, Cys228 and Tyr272. Previous studies have shown that formation of the tyrosyl-cysteine (Tyr-Cys) cofactor is a self-processing step requiring only copper and dioxygen. We have investigated the biogenesis of cofactor-containing galactose oxidase from pregalactose oxidase lacking the Tyr-Cys cross-link but having a fully processed N-terminal sequence, using both Cu(I) and Cu(II). Mature galactose oxidase forms rapidly following exposure of a pregalactose oxidase-Cu(I) complex to dioxygen (t(1/2) = 3.9s at pH7). In contrast, when Cu(II) is used in place of Cu(I) the maturation process requires several hours (t(1/2) = 5.1 h). EDTA prevents reaction of pregalactose oxidase with Cu(II) but does not interfere with the Cu(I)-dependent biogenesis reaction. The yield of cross-link corresponds to the amount of copper added, although a fraction of the pregalactose oxidase protein is unable to undergo this cross-linking reaction. The latter component, which may have an altered conformation, does not interfere with analysis of cofactor biogenesis at low copper loading. The biogenesis product has been quantitatively characterized, and mechanistic studies have been developed for the Cu(I)-dependent reaction, which forms oxidized, mature galactose oxidase and requires two molecules of O2. Transient kinetics studies of the biogenesis reaction have revealed a pH sensitivity that appears to reflect ionization of a protein group (pKa = 7.3) at intermediate pH resulting in a rate acceleration and protonation of an early oxygenated intermediate at lower pH competing with commitment to cofactor formation. These spectroscopic, kinetic, and biochemical results lead to new insights into the biogenesis mechanism.
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Affiliation(s)
- Mei M Whittaker
- Department of Environmental and Biomolecular Systems, OGI School of Science and Engineering, Oregon Health and Science University, 20000 N.W. Walker Road, Beaverton, OR 97006, USA
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37
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Affiliation(s)
- Marc Fontecave
- Laboratoire de Chimie et Biochimie des Centres Rédox Biologiques, DRDC-CB, CEA/CNRS/Université Joseph Fourier, UMR 5047, 17, Avenue des Martyrs, 38054 Grenoble Cedex 09, France.
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38
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Firbank SJ, Rogers M, Hurtado-Guerrero R, Dooley DM, Halcrow MA, Phillips SEV, Knowles PF, McPherson MJ. Cofactor processing in galactose oxidase. Biochem Soc Trans 2003; 31:506-9. [PMID: 12773145 DOI: 10.1042/bst10.1042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Galactose oxidase (GO; EC 1.1.3.9) is a monomeric 68 kDa enzyme that contains a single copper and an amino acid-derived cofactor. The mechanism of this radical enzyme has been widely studied by structural, spectroscopic, kinetic and mutational approaches and there is a reasonable understanding of the catalytic mechanism and activation by oxidation to generate the radical cofactor that resides on Tyr-272, one of the copper ligands. Biogenesis of this cofactor involves the post-translational, autocatalytic formation of a thioether cross-link between the active-site residues Cys-228 and Tyr-272. This process is closely linked to a peptide bond cleavage event that releases the N-terminal 17-amino-acid pro-peptide. We have shown using pro-enzyme purified in copper-free conditions that mature oxidized GO can be formed by an autocatalytic process upon addition of copper and oxygen. Structural comparison of pro-GO (GO with the prosequence present) with mature GO reveals overall structural similarity, but with some regions showing significant local differences in main chain position and some active-site-residue side chains differing significantly from their mature enzyme positions. These structural effects of the pro-peptide suggest that it may act as an intramolecular chaperone to provide an open active-site structure conducive to copper binding and chemistry associated with cofactor formation. Various models can be proposed to account for the formation of the thioether bond and oxidation to the radical state; however, the mechanism of prosequence cleavage remains unclear.
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Affiliation(s)
- S J Firbank
- Astbury Centre for Structural Molecular Biology, School of Biochemistry and Molecular Biology, University of Leeds, Leeds LS2 9JT, UK
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39
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Affiliation(s)
- James W Whittaker
- Department of Environmental and Biomolecular Systems, OGI School of Science and Engineering, Oregon Health and Science University, 20000 Northwest Walker Road, Beaverton, Oregon 97006, USA.
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40
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Abstract
The free radical-coupled copper catalytic motif has emerged as the unifying feature of a new family of enzymes, the radical copper oxidases. Their highly evolved active sites include a novel amino acid modification, the Tyr-Cys dimer, that forms spontaneously through self-processing of the protein during its maturation. The active site is remarkable in the extent to which metal ligands participate in the catalytic process. Rather than simply coordinating the metal ion, the ligands perform essential redox and proton-transfer functions in the chemistry of the active site, directed by their interactions with the copper center in the protein. The wide phylogenetic distribution and range of functions represented within the family hint of a fundamental role for these enzymes in the biology of oxygen. The roles for these enzymes are further expanding through a variety of biotechnological applications.
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Affiliation(s)
- James W Whittaker
- Department of Biochemistry and Molecular Biology, OGI School of Science and Engineering, OHSU, Beaverton, Oregon 97006, USA
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41
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Jazdzewski BA, Reynolds AM, Holland PL, Young VG, Kaderli S, Zuberbühler AD, Tolman WB. Copper(I)-phenolate complexes as models of the reduced active site of galactose oxidase: synthesis, characterization, and O2 reactivity. J Biol Inorg Chem 2003; 8:381-93. [PMID: 12761659 DOI: 10.1007/s00775-002-0420-9] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2002] [Accepted: 10/15/2002] [Indexed: 10/18/2022]
Abstract
The Cu(I)-phenolate complexes (1)LCu and (2)LCu and the Cu(I)-phenol complex [H(2)LCu(CNC(6)H(3)Me(2))]BArF(4) were prepared and structurally characterized by X-ray crystallography, where (1)L(-) and (2)L(-) are ligands comprised of a 2,4-di- tert-butylphenolate linked to 1-isopropyl-1,5-diazacyclooctane or 1,4-diisopropyl-1,4,7-triazacyclononane, respectively. The reduced galactose oxidase (GAO) structural models (1)LCu and (2)LCu were found to be highly reactive with O(2), and through combined stopped-flow kinetic and EPR, UV-vis, and resonance Raman spectroscopic studies of the oxygenation of (2)LCu at low temperature, new intermediates relevant to those postulated for the active site oxidation step of the GAO catalytic cycle were identified. The oxygenation was shown by kinetics experiments to proceed via initial binding of O(2) to yield a green, unusually thermodynamically stable 1:1 adduct, (2)LCu(O(2)). Symmetric (eta(2)) binding of a superoxo ligand was indicated by oxygen-isotope-sensitive features in resonance Raman spectra obtained in batch experiments; peaks at nu((16)O(2))=1120 cm(-1), nu((18)O(16)O)=1093 cm(-1), and nu((18)O(2))=1058 cm(-1) were assigned as O-O stretching vibrations. These data represent the first experimental evidence for such superoxide coordination in complexes of tetradentate tripodal ligands and provide new precedent for how O(2) may bind at the reduced GAO active site. The 1:1 Cu/O(2) adduct subsequently evolves into a metastable purple species that is only observable under conditions of substoichiometric O(2). The kinetics of formation of this transient species are second order overall (rate= k'(2)[(2)LCu(O(2))][(2)LCu]). It exhibits an absorption band with lambda(max)=565 nm (epsilon=17900 M(-1) cm(-1)) and multiple oxygen-isotope-sensitive nu(Cu-O) and nu(O-O) features in the respective regions 500-550 cm(-1) and 700-850 cm(-1) in Raman spectra, with excitation-wavelength-dependent intensities that correlate with the 565 nm absorption feature. On the basis of the combined data available, the presence of multiple isomeric peroxodicopper species in the transient purple solution is postulated.
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Affiliation(s)
- Brian A Jazdzewski
- Department of Chemistry and Center for Metals in Biocatalysis, University of Minnesota, 207 Pleasant Street SE, Minneapolis, MN 55455, USA
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42
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Abstract
Advances have been made since 2000 that contribute to our understanding of the biogenesis, structure and mechanism of copper-containing tyrosyl radical enzymes. Efforts to detail the biogenesis of galactose oxidase have produced the structure of the precursor enzyme, which provides a framework for emerging mechanistic studies. The role of the tyrosyl radical of cytochrome c oxidase is being defined in studies that aim to understand the His-Tyr crosslink, the location of the radical and, by direct attempts, to provide evidence for the radical during turnover.
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Affiliation(s)
- Melanie S Rogers
- Department of Chemistry and Biochemistry, Gaines Hall, Montana State University, Bozeman, MT 59717, USA.
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43
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Affiliation(s)
- Bruce P Branchaud
- Department of Chemistry, University of Oregon, Eugene, Oregon 97403, USA
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44
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Andreana PR, Kowal P, Janczuk AJ, Wang PG. Alpha-Galactosyl trisaccharide epitope: Modification of the 6-primary positions and recognition by human anti- Gal antibody. Glycoconj J 2003; 20:107-18. [PMID: 15001843 DOI: 10.1023/b:glyc.0000018585.66094.ff] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Galactose oxidase (EC 1.1.3.9, GAO) was used to convert the C-6' OH of Galbeta(1 --> 4)Glcbeta-OBn (5) to the corresponding hydrated aldehyde (7). Chemical modification, through dehydratative coupling and reductive amination, gave rise to a small library of Galbeta(1 --> 4)Glcbeta-OBn analogues (9a-f, 10, 11). UDP-[6-(3)H]Gal studies indicated that alpha1,3-galactosyltransferase recognized the C-6' modified Galbeta(1 --> 4)Glcbeta-OBn analogues (9a-f, 10, 11). Preparative scale reactions ensued, utilizing a single enzyme UDP-Gal conversion as well as a dual enzymatic system (GalE and alpha1,3GalT), taking full advantage of the more economical UDP-Glc, giving rise to compounds 6, 15-22. Galalpha(1 --> 3)Galbeta(1 --> 4)Glcbeta-OBn trisaccharide (6) was produced on a large scale (2 g) and subjected to the same chemoenzymatic modification as stated above to produce C-6" modified derivatives (23-30). An ELISA bioassay was performed utilizing human anti-alphaGal antibodies to study the binding affinity of the derivatized epitopes (6, 15-30). Modifications made at the C-6' position did not alter the IgG antibody's ability to recognize the unnatural epitopes. Modifications made at the C-6" position resulted in significant or complete abrogation of recognition. The results indicate that the C-6' OH of the alphaGal trisaccharide epitope is not mandatory for antibody recognition.
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45
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Abstract
Catalytic effects of galactose oxidase on the oxidation of beta-D-galactose-carrying lipids with an oligo-ethylene glycol spacer (number of ethylene glycol units (n)=1, 2, 3, 6, 9, 13, and 20) were examined. The affinity of galactose oxidase for the galactose residue in the amphiphile (estimated by the inverse of the Michaelis constant, K(m)) was much higher than those for free D-galactose and small beta-D-galactopyranosides, and dependent on the length of the ethylene glycol spacer. That is, both below and above the critical micellar concentration, the 1/K(m) values decreased with an increase in the n value. The effectiveness of the enzyme, which can be estimated by the k(cat)/K(m) value, showed the same tendency as the 1/K(m) value. These results could be attributed to the role of the nonpolar environment around the galactose residue in the binding by the enzyme. A significant enhancement of the enzymatic oxidation of galactose residue on the liposome surface was also observed.
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Affiliation(s)
- Hiromi Kitano
- Department of Chemical and Biochemical Engineering, Toyama University, Toyama 930, Japan
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46
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Thomas F, Gellon G, Gautier-Luneau I, Saint-Aman E, Pierre JL. A structural and functional model of galactose oxidase: control of the one-electron oxidized active form through two differentiated phenolic arms in a tripodal ligand. Angew Chem Int Ed Engl 2002; 41:3047-50. [PMID: 12203454 DOI: 10.1002/1521-3773(20020816)41:16<3047::aid-anie3047>3.0.co;2-w] [Citation(s) in RCA: 93] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Fabrice Thomas
- Laboratoire de Chimie Biomimétique, LEDSS, UMR CNRS 5616, Université J. Fourier, BP 53, 38041 Grenoble cedex 9, France.
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47
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Affiliation(s)
- Lianhong Sun
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA
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48
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Abstract
A microdialysis-coupled flow injection amperometric Sensor (microFIAS) was used to determine glucose, galactose, and lactose in milk. The sensor is based on enzyme-catalyzed reaction in combination with the three well-established analytical techniques, namely; microdialysis sampling, flow injection analysis (FIA), and amperometric detection. With the multianalyte sensor it was possible to detect glucose and galactose by sequential injection of their corresponding oxidase enzymes: glucose oxidase and galactose oxidase, while lactose was determined by injection of a mixture of beta-galactosidase and glucose oxidase enzymes. The sensor showed a linear response between 0.05 and 10 mM for glucose, between 0.1 and 20 mM for galactose and between 0.2 and 20 mM for lactose, respectively. The relative standard deviation values of the sensor measurements for glucose, galactose, and lactose were 3-4% (n = 3). The sensor measurements for lactose content in milk were compared with a standard method with an infrared spectrophotometer.
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Affiliation(s)
- V Rajendran
- Department of Agricultural and Biological Engineering, The Pennsylvania State University, University Park 16802, USA
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49
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Abstract
Combined enzymatic oxidation of D-galactose by D-galactose oxidase [EC 1.1.3.9] in water, amination with butylamine, and oxalic acid catalyzed Amadori rearrangement in methanol yielded 1,6-bis(butylamino)-1,6-dideoxy-erythro-hexo-2,5-diulose, demonstrating how in situ formed galacto-hexodialdose can be used to cross-link protein residues. The various species formed during this three-step conversion are present as bicyclic structures in solution as established by 13C labeling and in situ NMR spectroscopy of the reaction mixtures. Using protein (gelatin) instead of butylamine, distinct Amadori product formation was observed using 99% enriched D-(1-(13)C)- and D-(2-(13)C)-galactose.
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Affiliation(s)
- Rob Schoevaart
- Industrial Fermentative Chemistry, Leiden University, Einsteinweg 55, PO Box 9502, NL-2300 RA, Leiden, The Netherlands
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50
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Abstract
Two anthraquinone galactosyl-biomimetic dye-ligands comprising, as terminal biomimetic moiety, galactose analogues (1-amino-1-deoxy-beta-D-galactose and D(+)-galactosamine) were designed for the enzyme galactose oxidase (GAO), using molecular modelling, synthesized and characterized. The biomimetic ligands were immobilized on agarose beads and the affinity adsorbents, together with a non-biomimetic adsorbent bearing Cibacron Blue 3GA, were studied for their ability to purify GAO from Dactylium dendroides. Both biomimetic adsorbents showed higher purifying ability for GAO compared to the non-biomimetic adsorbent, thus demonstrating their superior effectiveness as affinity chromatography materials. In particular, the affinity adsorbent comprising, as terminal biomimetic moiety, 1-amino-1-deoxy-beta-D-galactose (BM1) exhibited the highest purifying ability for GAO. This affinity adsorbent did not bind galactose dehydrogenase, glucose dehydrogenase, alcohol dehydrogenase, or glucose oxidase. The dissociation constant (K(D)) of the immobilized BM1 ligand with GAO was found to be equal to 45.8 microM, whereas the binding capacity was equal to 709 U per ml adsorbent. Therefore, the BMI adsorbent was integrated in a facile two-step purification procedure for GAO. The purified enzyme showed a specific activity equal to 2038 U/mg, the highest reported so far, approximately 74% overall recovery and a single band after sodium dodecylsulfate-polyacrylamide gel electrophoresis analysis.
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Affiliation(s)
- C F Mazitsos
- Department of Agricultural Biotechnology, Agricultural University of Athens, Greece
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