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Zakaria MAT, Sakimin SZ, Ismail MR, Ahmad K, Kasim S. Growth Enhancement and Resistance of Banana Plants to Fusarium Wilt Disease as Affected by Silicate Compounds and Application Frequency. Plants (Basel) 2024; 13:542. [PMID: 38498542 PMCID: PMC10892973 DOI: 10.3390/plants13040542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Accepted: 07/18/2022] [Indexed: 03/20/2024]
Abstract
The amendment of soils with silicate (Si) compounds is essential to promote growth performance and control Fusarium wilt disease in bananas. Two successive greenhouse trials were conducted at the experimental farm of the University of Putra Malaysia. The treatments were arranged in split plots using a randomized complete block design (RCBD) with four replicates to investigate the effects of Si compounds and application frequency on controlling FOC. Si compounds were used at a constant concentration of 0.1%: T0 (control), T1 (13% SiO2:20% K2O), T2 (26.6% SiO2:13.4% K2O) and T3 (36.2% SiO2:17% Na2O). There were three application frequencies by day intervals (DI): 0DI (without any application), 7DI (12× within 12 weeks after transplanting (WAT)), 15DI (6× within 12 WAT) and 30DI (3× within 12 WAT). From these findings, we observed that the photosynthesis rate started to increase from 10.6 to 19.4 µmol CO2 m-2s-1, when the total chlorophyll content started to increase from 3.85 to 7.61 mgcm-2. The transpiration rate started to increase from a value of 1.94 to 4.31 mmol H2O m-2s-1, when the stomata conductance started to increase from 0.237 to 0.958 mmol m-2s-1. The proline content started to increase from 22.89 to 55.07 µmg-1, when the relative water content started to increase from 42.92 to 83.57%.
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Affiliation(s)
- Md Aiman Takrim Zakaria
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Malaysia; (M.A.T.Z.); (M.R.I.)
| | - Siti Zaharah Sakimin
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Malaysia; (M.A.T.Z.); (M.R.I.)
- Institute of Tropical Agriculture and Food Security (ITAFoS), Universiti Putra Malaysia, Serdang 43400, Malaysia
| | - Mohd Razi Ismail
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Malaysia; (M.A.T.Z.); (M.R.I.)
| | - Khairulmazmi Ahmad
- Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Malaysia;
| | - Susilawati Kasim
- Department of Land Management, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Malaysia;
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Zakaria MAT, Sakimin SZ, Ismail MR, Ahmad K, Kasim S, Baghdadi A. Biostimulant Activity of Silicate Compounds and Antagonistic Bacteria on Physiological Growth Enhancement and Resistance of Banana to Fusarium Wilt Disease. Plants (Basel) 2023; 12:1124. [PMID: 36903985 PMCID: PMC10005601 DOI: 10.3390/plants12051124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/24/2022] [Revised: 09/07/2022] [Accepted: 09/14/2022] [Indexed: 06/18/2023]
Abstract
Biostimulants such as silicate (SiO32-) compounds and antagonistic bacteria can alter soil microbial communities and enhance plant resistance to the pathogens and Fusarium oxysporum f. sp. cubense (FOC), the causal agent of Fusarium wilt disease in bananas. A study was conducted to investigate the biostimulating effects of SiO32- compounds and antagonistic bacteria on plant growth and resistance of the banana to Fusarium wilt disease. Two separate experiments with a similar experimental setup were conducted at the University of Putra Malaysia (UPM), Selangor. Both experiments were arranged in a split-plot randomized complete block design (RCBD) with four replicates. SiO32- compounds were prepared at a constant concentration of 1%. Potassium silicate (K2SiO3) was applied on soil uninoculated with FOC, and sodium silicate (Na2SiO3) was applied to FOC-contaminated soil before integrating with antagonistic bacteria; without Bacillus spp. ((0B)-control), Bacillus subtilis (BS), and Bacillus thuringiensis (BT). Four levels of application volume of SiO32- compounds [0, 20, 40, 60 mL) were used. Results showed that the integration of SiO32- compounds with BS (108 CFU mL-1) enhanced the physiological growth performance of bananas. Soil application of 28.86 mL of K2SiO3 with BS enhanced the height of the pseudo-stem by 27.91 cm. Application of Na2SiO3 and BS significantly reduced the Fusarium wilt incidence in bananas by 56.25%. However, it was recommended that infected roots of bananas should be treated with 17.36 mL of Na2SiO3 with BS to stimulate better growth performance.
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Affiliation(s)
- Md Aiman Takrim Zakaria
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia
| | - Siti Zaharah Sakimin
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia
- Institute of Tropical Agriculture and Food Security (ITAFoS), Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia
| | - Mohd Razi Ismail
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia
| | - Khairulmazmi Ahmad
- Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia
| | - Susilawati Kasim
- Department of Land Management, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia
| | - Ali Baghdadi
- Department of Agricultural and Food Sciences (DISTAL), University of Bologna, 40127 Bologna, Italy
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Md Zali AZ, Ja'afar Y, Paramisparan K, Ismail SI, Saad N, Mohd Hata E, Md Hatta MA, Ismail MR, Yusof MT, Zulperi D. First report of Burkholderia gladioli causing bacterial panicle blight of rice in Malaysia. Plant Dis 2022; 107:551. [PMID: 35748735 DOI: 10.1094/pdis-03-22-0650-pdn] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Rice (Oryza sativa) is a staple food for most of the world's populations, particularly in Asia (Gumma et al. 2011). The rice sector provides Malaysians with a food supply, food sufficiency, and income for growers (Man et al. 2009). From January to February 2022, panicle samples showing symptoms of bacterial panicle blight (BPB) disease, including reddish-brown, linear lesions with indistinct margins on flag-leaf sheaths and blighted, upright, grayish straw-colored florets with sterile and aborted grains on panicles were collected in granary areas in Sekinchan, Selangor, Malaysia with 90% disease incidence in fields. Surface-sterilization of infected leaf tissue was performed using 75% ethanol and 1% sodium hypochlorite, followed by rinsing three times in sterilized water. Leaf tissue was macerated in sterilized water and aliquots were spread on King's B agar medium, then cultured for 24 h to 48 h at 35 °C. All isolated bacteria were Gram-negative rods, positive for catalase and gelatinase but negative for indole, oxidase and hydrogen sulfide (H2S), and utilized sucrose, inositol, mannitol, glucose, and citrate. Colonies were circular and smooth-margined, producing a diffusible yellowish-green pigment on King's B agar medium, which are characteristics of Burkholderia species (Keith et al. 2005). Five representative isolates (UPMBG7, UPMBG8, UPMBG9, UPMBG15, UPMBG17) were selected for molecular and pathogenicity tests. PCR using specific primers targeting the gyrB gene for molecular characterization was performed, and the ∼470 bp amplicons were sequenced (Maeda et al. 2006) and deposited in GenBank (OM824438 to OM824442). A BLASTn analysis revealed that the five isolates were 99% identical to the B. gladioli reference strains MAFF 302533, GRBB15041, and LMG19584 in GenBank (AB190628, KX638432, and AB220898). A phylogenetic tree using Maximum-likelihood analysis of the gyrB gene sequences showed that the five isolates were 99% identical to B. gladioli reference strains (AB190628, KX638432, and AB220898). To verify the identification of these isolates, the 16S rDNA gene was amplified using 16SF/16SR primers (Ramachandran et al. 2021), producing ~1,400 bp amplicons. The resulting sequences of the five isolates (OM869953 to OM869957) were 98% identical to the reference strains of B. gladioli (NR113629 and NR117553). To confirm pathogenicity, 10 ml suspensions of the five isolates at of 108 CFU/ml were inoculated into the panicles and crowns of 75-day-old rice seedlings of local rice varieties MR269 and MR219 grown in a glasshouse with temperatures ranging from 37 °C to 41 °C (Nandakumar et al. 2009). Control rice seedlings were inoculated with sterilized water. All isolates produced BPB disease symptoms like those originally found in the rice fields at four weeks after inoculation. Control seedlings remained asymptomatic. To fulfill Koch's postulates, the bacteria were reisolated from symptomatic panicles and were confirmed as B. gladioli by sequence analysis of the gyrB and 16S rDNA genes. To our knowledge, this is the first report of B. gladioli causing BPB disease of rice in Malaysia. Since BPB disease causes a significant threat to the rice industry, it is crucial to investigate the diversity of this destructive pathogen for effective disease management strategies in Malaysia.
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Affiliation(s)
- Adam Zafdri Md Zali
- Universiti Putra Malaysia, 37449, Department of Plant Protection, Serdang, Selangor, Malaysia;
| | - Yasmin Ja'afar
- Universiti Putra Malaysia, 37449, Department of Plant Protection, Serdang, Selangor, Malaysia;
| | - Karthik Paramisparan
- Universiti Putra Malaysia, 37449, Department of Plant Protection, Serdang, Selangor, Malaysia;
| | - Siti Izera Ismail
- Universiti Putra Malaysia, 37449, Department of Plant Protection, Faculty of Agriculture, 43400 UPM Serdang, Selangor Darul Ehsan, Serdang, Malaysia, 43400;
| | - Norsazilawati Saad
- Universiti Putra Malaysia Faculty of Agriculture, 119196, Plant Protection, Department of Plant Protection,, Faculty of Agriculture, UPM Serdang, Serdang, Selangor, Malaysia, 43400
- Universiti Putra Malaysia Faculty of Agriculture, 119196, Plant Protection, Department of Plant Protection,, Faculty of Agriculture, UPM Serdang, Serdang, Selangor, Malaysia, 43400;
| | - Erneeza Mohd Hata
- Universiti Putra Malaysia Fakulti Pertanian, 119196, Plant Protection, Dept. Of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, Serdang, Selangor, Malaysia, 43400;
| | - Muhammad Asyraf Md Hatta
- Universiti Putra Malaysia Fakulti Pertanian, 119196, Agriculture Technology, Serdang, Selangor, Malaysia;
| | - Mohd Razi Ismail
- Universiti Putra Malaysia, 37449, Department of Crop Science, Serdang, Selangor, Malaysia;
| | - Mohd Termizi Yusof
- Universiti Putra Malaysia, Department of Microbiology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang, Selangor, Malaysia, 43400;
| | - Dzarifah Zulperi
- Universiti Putra Malaysia Fakulti Pertanian, 119196, Plant Protection, Faculty of Agriculture, UPM, 43400 Serdang Selangor, MALAYSIA, Serdang, Malaysia, 43400;
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Che Hashim MF, Haidar AN, Khairudin N, Muharam FM, Berahim Z, Zed Zulkafli ZZ, Mohd Zad SN, Ismail MR. Physiological and Yield Responses of Five Rice Varieties to Nitrogen Fertilizer Under Farmer’s Field in Iada Ketara, Terengganu, Malaysia. SAINS MALAYS 2022. [DOI: 10.17576/jsm-2022-5102-03] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Studies have suggested that the need for site-specific fertilizer application to reduce waste of resources as soil nutrients varies across the Malaysian rice fields. The present study was aiming to determine the physiological and yield responses of five rice varieties (MR269, MR297, MR220CL2, MR219, and UPUTRA) treated with three nitrogen (N) rates under farmer’s field condition. The experiment design was a split-plot randomized complete block design, in which N rates, i.e. low (76 kg N ha-1), farmers’ practice (109 kg N ha-1) and high (142 kg N ha-1), were the main plot while rice varieties were the sub-plot. In general, harvestable panicle yield including the grain (at 14% moisture content) of all varieties was between 5.4 and 7.4 t ha-1 under all N treatments. Among all varieties, MR220CL2 recorded significantly higher yield, irrespective of N treatments. The physiological responses of rice varieties to N treatments, however, were mostly non-significant except for panicle biomass. Specifically, each variety recorded different biomass partitioning percentages for different organs at different growth phases. In the case of N treatments, there was no significant difference in the yield between 30% low and 30% high N rates as compared to farmer’s practice at harvest. Hence, it could be suggested that farmers may reduce N application of about 30% without significant reduction in harvestable panicle yield for this specific plot. However, the potential N uptake might also be affected by unaccounted factors such as the availability of micronutrients and planting density.
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Ismail MR, Gilliland JA, Matthews JI, Battram DS. Process evaluation of the Centrally Procured School Food Program (CPSFP) in Ontario, Canada: school-level perspectives. Health Educ Res 2022; 36:554-567. [PMID: 34191009 DOI: 10.1093/her/cyab023] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Revised: 04/19/2021] [Accepted: 05/20/2021] [Indexed: 06/13/2023]
Abstract
This study explored the implementation of the Centrally Procured School Food Program (CPSFP)-a free, universal, volunteer-led snack program for elementary school children. To assess participants' perceptions and experiences with the CPSFP, interviews were conducted in school-level participants (n = 33) using a semi-structured interview guide. Fifteen on-site visits also were conducted at each school to observe implementation practices. Quantitative data were obtained through a general information form where participants provided school characteristics and weekly logbooks where they described program operations and food quality. Most participants expressed positive perceptions of the CPSFP, identifying it as a valuable program for their students. Successful program implementation was associated with an appreciation for the CPSFP and the participation of the school community. Challenges to program implementation included concerns with the volume and types of food provided, issues with classroom food delivery and distribution and communication challenges. Suggestions for improvement included building capacities and enhancing student engagement in the program. Participants provided an in-depth assessment of the implementation of the CPSFP. The lessons learned and suggestions provided may help not only enhance the reach, feasibility and fidelity of the CPSFP, but inform the best practices for similar programs.
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Sibuar AA, Zulkafflee NS, Selamat J, Ismail MR, Lee SY, Abdull Razis AF. Quantitative Analysis and Human Health Risk Assessment of Heavy Metals in Paddy Plants Collected from Perak, Malaysia. Int J Environ Res Public Health 2022; 19:ijerph19020731. [PMID: 35055550 PMCID: PMC8775821 DOI: 10.3390/ijerph19020731] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/02/2021] [Revised: 10/14/2021] [Accepted: 10/26/2021] [Indexed: 02/05/2023]
Abstract
Rice is one of the major crops as well as the staple food in Malaysia. However, historical mining activity has raised a concern regarding heavy metal contamination in paddy plants, especially in Perak, a state with major tin mining during the late nineteenth century. Therefore, the objective of this study is to investigate the heavy metals (As, Cd, Pb, Cu, Cr) contamination in paddy soils and paddy plants in three districts in Perak. The content of heavy metals was determined using ICP-MS, while the absorption and transferability of heavy metals in the paddy plants were investigated through enrichment (EF) and translocation (TF) factors. Principal component analysis (PCA) was employed to recognize the pattern of heavy metal contaminations in different sampling areas. Health risk assessment was performed through calculation of various indices. The quantification results showed that root contained highest concentration of the studied heavy metals, with As exhibiting the highest concentration. The EF results revealed the accumulation of As, Cu, and Cr in the rice grains while PCA showed the different compositional pattern in the different sampling areas. The health risk assessment disclosed both noncarcinogenic and carcinogenic risks in the local adults and children. Overall, findings from this study show that heavy metal contamination poses potential health risks to the residents and control measure is required.
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Affiliation(s)
- Agatha Anak Sibuar
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia; (A.A.S.); (N.S.Z.); (J.S.)
| | - Nur Syahirah Zulkafflee
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia; (A.A.S.); (N.S.Z.); (J.S.)
| | - Jinap Selamat
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia; (A.A.S.); (N.S.Z.); (J.S.)
- Laboratory of Food Safety and Food Integrity, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia
| | - Mohd Razi Ismail
- Laboratory of Climate-Smart Food Crop Production, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia;
| | - Soo Yee Lee
- Natural Medicines and Products Research Laboratory, Institute of Bioscience, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia;
| | - Ahmad Faizal Abdull Razis
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia; (A.A.S.); (N.S.Z.); (J.S.)
- Laboratory of Food Safety and Food Integrity, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia
- Natural Medicines and Products Research Laboratory, Institute of Bioscience, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia;
- Correspondence:
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Zulkafflee NS, Mohd Redzuan NA, Nematbakhsh S, Selamat J, Ismail MR, Praveena SM, Yee Lee S, Abdull Razis AF. Heavy Metal Contamination in Oryza sativa L. at the Eastern Region of Malaysia and Its Risk Assessment. Int J Environ Res Public Health 2022; 19:739. [PMID: 35055560 PMCID: PMC8775590 DOI: 10.3390/ijerph19020739] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Revised: 09/21/2021] [Accepted: 09/28/2021] [Indexed: 02/06/2023]
Abstract
Paddy plants tend to accumulate heavy metals from both natural and anthropogenic sources, and this poses adverse risks to human health. The objective of this study was to investigate heavy metal contamination in paddy plants in Kelantan, Malaysia, and its health risk assessment. The bioaccumulation of heavy metals was studied by means of enrichment (EF) and translocation factors (TF). The health risk assessment was performed based on USEPA guidelines. The EF for heavy metals in the studied areas was in the descending order of Cu > As > Cr > Cd > Pb. Meanwhile, Cr and Pb exhibited higher TF values from stem to grain compared with the others. The combined hazard index (HI) resulting from five heavy metals exceeded the acceptable limit (HI >1). The lifetime cancer risk, in both adult and children, was beyond the acceptable limit (10-4) and mainly resulted from exposure. The total cancer risk (CRt) due to simultaneous exposures to multiple carcinogenic elements also exceeded 10-4. In conclusion, intake of heavy metal through rice ingestion is likely to cause both non-carcinogenic and carcinogenic health risks. Further research is required to investigate the extent of heavy metal contamination in agricultural soils and, moreover, to establish human exposure as a result of rice consumption.
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Affiliation(s)
- Nur Syahirah Zulkafflee
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia, Serdang 43400, Malaysia; (N.S.Z.); (N.A.M.R.); (J.S.)
| | - Nurul Adillah Mohd Redzuan
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia, Serdang 43400, Malaysia; (N.S.Z.); (N.A.M.R.); (J.S.)
| | - Sara Nematbakhsh
- Laboratory of Food Safety and Food Integrity, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang 43400, Malaysia; (S.N.); (S.M.P.)
| | - Jinap Selamat
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia, Serdang 43400, Malaysia; (N.S.Z.); (N.A.M.R.); (J.S.)
- Laboratory of Food Safety and Food Integrity, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang 43400, Malaysia; (S.N.); (S.M.P.)
| | - Mohd Razi Ismail
- Laboratory of Climate-Smart Food Crop Production, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang 43400, Malaysia;
| | - Sarva Mangala Praveena
- Laboratory of Food Safety and Food Integrity, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang 43400, Malaysia; (S.N.); (S.M.P.)
- Department of Environmental and Occupational Health, Faculty of Medicine and Health Sciences, Universiti Putra Malaysia, Serdang 43400, Malaysia
| | - Soo Yee Lee
- Natural Medicines and Products Research Laboratory, Institute of Bioscience, Universiti Putra Malaysia, Serdang 43400, Malaysia;
| | - Ahmad Faizal Abdull Razis
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia, Serdang 43400, Malaysia; (N.S.Z.); (N.A.M.R.); (J.S.)
- Laboratory of Food Safety and Food Integrity, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang 43400, Malaysia; (S.N.); (S.M.P.)
- Natural Medicines and Products Research Laboratory, Institute of Bioscience, Universiti Putra Malaysia, Serdang 43400, Malaysia;
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Roslin NA, Che’Ya NN, Sulaiman N, Alahyadi LAN, Ismail MR. Mobile Application Development for Spectral Signature of Weed Species in Rice Farming. JST 2021. [DOI: 10.47836/pjst.29.4.01] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Weed infestation happens when there is intense competition between rice and weeds for light, nutrients and water. These conditions need to be monitored and controlled to lower the growth of weeds as they affected crops production. The characteristics of weeds and rice are challenging to differentiate macroscopically. However, information can be acquired using a spectral signature graph. Hence, this study emphasises using the spectral signature of weed species and rice in a rice field. The study aims to generate a spectral signature graph of weeds in rice fields and develop a mobile application for the spectral signature of weeds. Six weeds were identified in Ladang Merdeka using Fieldspec HandHeld 2 Spectroradiometer. All the spectral signatures were stored in a spectral database using Apps Master Builder, viewed using smartphones. The results from the spectral signature graph show that the jungle rice (Echinochloa spp.) has the highest near-infrared (NIR) reflectance. In contrast, the saromacca grass (Ischaemum rugosum) shows the lowest NIR reflectance. Then, the first derivative (FD) analysis was run to visualise the separation of each species, and the 710 nm to 750 nm region shows the highest separation. It shows that the weed species can be identified using spectral signature by FD analysis with accurate separation. The mobile application was developed to provide information about the weeds and control methods to the users. Users can access information regarding weeds and take action based on the recommendations of the mobile application.
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Adamu A, Ahmad K, Siddiqui Y, Ismail IS, Asib N, Bashir Kutawa A, Adzmi F, Ismail MR, Berahim Z. Ginger Essential Oils-Loaded Nanoemulsions: Potential Strategy to Manage Bacterial Leaf Blight Disease and Enhanced Rice Yield. Molecules 2021; 26:3902. [PMID: 34202405 PMCID: PMC8271405 DOI: 10.3390/molecules26133902] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Revised: 06/06/2021] [Accepted: 06/07/2021] [Indexed: 11/16/2022] Open
Abstract
The bacterial leaf blight (BLB) caused by Xanthomonas oryzae pv. oryzae (Xoo) is one of the most serious rice diseases, causing huge yield losses worldwide. Several technologies and approaches have been opted to reduce the damage; however, these have had limited success. Recently, scientists have been focusing their efforts on developing efficient and environmentally friendly nanobactericides for controlling bacterial diseases in rice fields. In the present study, a scanning electron microscope (SEM), transmission electron microscope (TEM), and a confocal laser scanning microscope (CLSM) were utilized to investigate the mode of actions of ginger EOs on the cell structure of Xoo. The ginger EOs caused the cells to grow abnormally, resulting in an irregular form with hollow layers, whereas the dimethylsulfoxide (DMSO) treatment showed a typical rod shape for the Xoo cell. Ginger EOs restricted the growth and production of biofilms by reducing the number of biofilms generated as indicated by CLSM. Due to the instability, poor solubility, and durability of ginger EOs, a nanoemulsions approach was used, and a glasshouse trial was performed to assess their efficacy on BLB disease control. The in vitro antibacterial activity of the developed nanobactericides was promising at different concentration (50-125 µL/mL) tested. The efficacy was concentration-dependent. There was significant antibacterial activity recorded at higher concentrations. A glasshouse trial revealed that developed nanobactericides managed to suppress BLB disease severity effectively. Treatment at a concentration of 125 μL/mL was the best based on the suppression of disease severity index, AUDPC value, disease reduction (DR), and protection index (PI). Furthermore, findings on plant growth, physiological features, and yield parameters were significantly enhanced compared to the positive control treatment. In conclusion, the results indicated that ginger essential oils loaded-nanoemulsions are a promising alternative to synthetic antibiotics in suppressing Xoo growth, regulating the BLB disease, and enhancing rice yield under a glasshouse trial.
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Affiliation(s)
- Abdullahi Adamu
- Department of Biological Sciences, Faculty of Science, Sokoto State University, P.M.B 2134 Sokoto, Nigeria;
- Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Malaysia; (N.A.); (A.B.K.)
| | - Khairulmazmi Ahmad
- Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Malaysia; (N.A.); (A.B.K.)
- Sustainable Agronomy and Crop Protection, Institute of Plantation Studies (IKP), Universiti Putra Malaysia, Serdang 43400, Malaysia;
- Institute of Tropical Agriculture and Food Security (ITAFoS), Universiti Putra Malaysia, Serdang 43400, Malaysia; (M.R.I.); (Z.B.)
| | - Yasmeen Siddiqui
- Sustainable Agronomy and Crop Protection, Institute of Plantation Studies (IKP), Universiti Putra Malaysia, Serdang 43400, Malaysia;
- Institute of Tropical Agriculture and Food Security (ITAFoS), Universiti Putra Malaysia, Serdang 43400, Malaysia; (M.R.I.); (Z.B.)
| | - Intan Safinar Ismail
- Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, Serdang 43400, Malaysia;
| | - Norhayu Asib
- Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Malaysia; (N.A.); (A.B.K.)
| | - Abdulaziz Bashir Kutawa
- Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Malaysia; (N.A.); (A.B.K.)
- Department of Biological Sciences, Faculty of Life Science, Federal University Dutsin-Ma, P.M.B 5001 Dutsin-Ma, Nigeria
| | - Fariz Adzmi
- Sustainable Agronomy and Crop Protection, Institute of Plantation Studies (IKP), Universiti Putra Malaysia, Serdang 43400, Malaysia;
| | - Mohd Razi Ismail
- Institute of Tropical Agriculture and Food Security (ITAFoS), Universiti Putra Malaysia, Serdang 43400, Malaysia; (M.R.I.); (Z.B.)
| | - Zulkarami Berahim
- Institute of Tropical Agriculture and Food Security (ITAFoS), Universiti Putra Malaysia, Serdang 43400, Malaysia; (M.R.I.); (Z.B.)
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10
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Zakaria Z, Zulkafflee NS, Mohd Redzuan NA, Selamat J, Ismail MR, Praveena SM, Tóth G, Abdull Razis AF. Understanding Potential Heavy Metal Contamination, Absorption, Translocation and Accumulation in Rice and Human Health Risks. Plants (Basel) 2021; 10:1070. [PMID: 34073642 PMCID: PMC8227320 DOI: 10.3390/plants10061070] [Citation(s) in RCA: 43] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/16/2021] [Revised: 02/23/2021] [Accepted: 03/02/2021] [Indexed: 01/17/2023]
Abstract
Rice is a worldwide staple food and heavy metal contamination is often reported in rice production. Heavy metal can originate from natural sources or be present through anthropogenic contamination. Therefore, this review summarizes the current status of heavy metal contamination in paddy soil and plants, highlighting the mechanism of uptake, bioaccumulation, and health risk assessment. A scoping search employing Google Scholar, Science Direct, Research Gate, Scopus, and Wiley Online was carried out to build up the review using the following keywords: heavy metals, absorption, translocation, accumulation, uptake, biotransformation, rice, and human risk with no restrictions being placed on the year of study. Cadmium (Cd), arsenic (As), and lead (Pb) have been identified as the most prevalent metals in rice cultivation. Mining and irrigation activities are primary sources, but chemical fertilizer and pesticide usage also contribute to heavy metal contamination of paddy soil worldwide. Further to their adverse effect on the paddy ecosystem by reducing the soil fertility and grain yield, heavy metal contamination represents a risk to human health. An in-depth discussion is further offered on health risk assessments by quantitative measurement to identify potential risk towards heavy metal exposure via rice consumption, which consisted of in vitro digestion models through a vital ingestion portion of rice.
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Affiliation(s)
- Zuliana Zakaria
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia, UPM Serdang 43400, Selangor, Malaysia; (Z.Z.); (N.S.Z.); (N.A.M.R.); (J.S.)
| | - Nur Syahirah Zulkafflee
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia, UPM Serdang 43400, Selangor, Malaysia; (Z.Z.); (N.S.Z.); (N.A.M.R.); (J.S.)
| | - Nurul Adillah Mohd Redzuan
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia, UPM Serdang 43400, Selangor, Malaysia; (Z.Z.); (N.S.Z.); (N.A.M.R.); (J.S.)
| | - Jinap Selamat
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia, UPM Serdang 43400, Selangor, Malaysia; (Z.Z.); (N.S.Z.); (N.A.M.R.); (J.S.)
- Laboratory of Food Safety and Food Integrity, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, UPM Serdang 43400, Selangor, Malaysia;
| | - Mohd Razi Ismail
- Laboratory of Climate-Smart Food Crop Production, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, UPM Serdang 43400, Selangor, Malaysia;
| | - Sarva Mangala Praveena
- Laboratory of Food Safety and Food Integrity, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, UPM Serdang 43400, Selangor, Malaysia;
- Department of Environmental and Occupational Health, Faculty of Medicine and Health Sciences, Universiti Putra Malaysia, UPM Serdang 43400, Selangor, Malaysia
| | - Gergely Tóth
- Department of Soil Science and Environmental Informatics, Georgikon Faculty, University of Pannonia, H-8360 Keszthely, Hungary;
| | - Ahmad Faizal Abdull Razis
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia, UPM Serdang 43400, Selangor, Malaysia; (Z.Z.); (N.S.Z.); (N.A.M.R.); (J.S.)
- Laboratory of Food Safety and Food Integrity, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, UPM Serdang 43400, Selangor, Malaysia;
- Natural Medicines and Products Research Laboratory, Institute of Bioscience, Universiti Putra Malaysia, UPM Serdang 43400, Selangor, Malaysia
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11
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Roslin NA, Che’Ya NN, Rosle R, Ismail MR. Smartphone Application Development for Rice Field Management Through Aerial Imagery and Normalised Difference Vegetation Index (NDVI) Analysis. JST 2021. [DOI: 10.47836/pjst.29.2.07] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
In the current practices, farmers typically rely on the traditional method paper-based for farming data records, which leads to human error. However, the paper-based system can be improved by the mobile app technology to ease the farmers acquiring farm data as all of the farm information will be stored in digital form. This study aimed to develop a smartphone agricultural management app known as Padi2U and implement User Acceptance Test (UAT) for end-users. Padi2U was developed using Master App Builder software and integration with the multispectral imagery. Padi2U provides recommendations based on the Department of Agriculture’s (DOA), such as rice check, pest and disease control, and weed management. Through the Padi2U, farmers can access the field data to understand the crop health status online using the Normalised Difference Vegetation Index (NDVI) map derived from the multispectral images. The NDVI is correlated to the Soil Plant Analysis Development (SPAD) value, corresponding to R² = 0.4012. UAT results showed a 100 percent satisfaction score with suggestions were given to enhance the Padi2U performance. It shows that Padi2U can be improved to help farmers in the field monitoring virtually by integrating multispectral imagery and information from the field.
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Abdullahi A, Ahmad K, Ismail IS, Asib N, Ahmed OH, Abubakar AI, Siddiqui Y, Ismail MR. Potential of Using Ginger Essential Oils-Based Nanotechnology to Control Tropical Plant Diseases. Plant Pathol J 2020; 36:515-535. [PMID: 33312089 PMCID: PMC7721540 DOI: 10.5423/ppj.rw.05.2020.0077] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Revised: 09/26/2020] [Accepted: 09/28/2020] [Indexed: 05/26/2023]
Abstract
Essential oils (EOs) have gained a renewed interest in many disciplines such as plant disease control and medicine. This review discusses the components of ginger EOs, their mode of action, and their potential nanotechnology applications in controlling tropical plant diseases. Gas chromatography-mass spectroscopy (GC-MS), high-performance liquid chromatography, and headspace procedures are commonly used to detect and profile their chemical compositions EOs in ginger. The ginger EOs are composed of monoterpenes (transcaryophyllene, camphene, geranial, eucalyptol, and neral) and sesquiterpene hydrocarbons (α-zingiberene, ar-curcumene, β-bisabolene, and β-sesquiphellandrene). GC-MS analysis of the EOs revealed many compounds but few compounds were revealed using the headspace approach. The EOs have a wide range of activities against many phytopathogens. EOs mode of action affects both the pathogen cell's external envelope and internal structures. The problems associated with solubility and stability of EOs had prompted the use nanotechnology such as nanoemulsions. The use of nanoemulsion to increase efficiency and supply of EOs to control plant diseases control was discussed in this present paper. The findings of this review paper may accelerate the effective use of ginger EOs in controlling tropical plant diseases.
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Affiliation(s)
- Adamu Abdullahi
- Department of Biological Sciences, Faculty of Science, Sokoto State University, P.M.B 234, Birnin Kebbi Road, Sokoto State, Nigeria
- Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor Darul Ehsan, Malaysia
| | - Khairulmazmi Ahmad
- Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor Darul Ehsan, Malaysia
- Institute of Plantation Studies (IKP), Universiti Putra Malaysia, 4400 Serdang, Selangor Darul Ehsan, Malaysia
- Institute of Tropical Agriculture and Food Security (ITAFoS), Universiti Putra Malaysia, 300 Serdang, Selangor Darul Ehsan, Malaysia
| | - Intan Safinar Ismail
- Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, 43400 Serdang, Selangor Darul Ehsan, Malaysia
| | - Norhayu Asib
- Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor Darul Ehsan, Malaysia
| | - Osumanu Haruna Ahmed
- Department of Crop Science, Faculty of Agriculture and Food Sciences, Bintulu Campus Sarawak, Universiti Putra Malaysia, 97008 Bintulu, Sarawak, Malaysia
- Institute of Ecosystem Science Borneo, Faculty of Agriculture and Food Sciences, Bintulu Campus Sarawak, Universiti Putra Malaysia, 9008 Bintulu, Sarawak, Malaysia
| | - Abubakar Ismaila Abubakar
- Department of Integrated Science, School of Secondary Education (Science), Federal College of Education (Technical) Bichi, P.M.B 3473, Kano State, Nigeria
| | - Yasmeen Siddiqui
- Institute of Plantation Studies (IKP), Universiti Putra Malaysia, 4400 Serdang, Selangor Darul Ehsan, Malaysia
| | - Mohd Razi Ismail
- Institute of Tropical Agriculture and Food Security (ITAFoS), Universiti Putra Malaysia, 300 Serdang, Selangor Darul Ehsan, Malaysia
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13
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Zakaria NI, Ismail MR, Awang Y, Megat Wahab PE, Berahim Z. Effect of Root Restriction on the Growth, Photosynthesis Rate, and Source and Sink Relationship of Chilli ( Capsicum annuum L.) Grown in Soilless Culture. Biomed Res Int 2020; 2020:2706937. [PMID: 32090071 PMCID: PMC7008264 DOI: 10.1155/2020/2706937] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/21/2019] [Revised: 07/08/2019] [Accepted: 08/09/2019] [Indexed: 11/17/2022]
Abstract
Chilli (Capsicum annum L.) plant is a high economic value vegetable in Malaysia, cultivated in soilless culture containers. In soilless culture, the adoption of small container sizes to optimize the volume of the growing substrate could potentially reduce the production cost, but will lead to a reduction of plant growth and yield. By understanding the physiological mechanism of the growth reduction, several potential measures could be adopted to improve yield under restricted root conditions. The mechanism of growth reduction of plants subjected to root restriction remains unclear. This study was conducted to determine the physiological mechanism of growth reduction of root-restricted chilli plants grown in polyvinyl-chloride (PVC) column of two different volumes, 2392 cm3(root-restricted) and 9570 cm3(control) in soilless culture. Root restriction affected plant growth, physiological process, and yield of chilli plants. Root restriction reduced the photosynthesis rate and photochemical activity of PSII, and increased relative chlorophyll content. Limited root growth in root restriction caused an accumulation of high levels of sucrose in the stem and suggested a transition of the stem as a major sink organ for photoassimilate. Growth reduction in root restriction was not related to limited carbohydrate production, but due to the low sink demand from the roots. Reduction of the total yield per plant about, 23% in root restriction was concomitant, with a slightly increased harvest index which reflected an increased photoassimilate partitioning to the fruit production and suggested more efficient fruits production in the given small plant size of root restriction.
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Affiliation(s)
- Nurul Idayu Zakaria
- Laboratory of Climate-Smart Food Crop Production, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia
| | - Mohd Razi Ismail
- Laboratory of Climate-Smart Food Crop Production, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia
| | - Yahya Awang
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia
| | - Puteri Edaroyati Megat Wahab
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia
| | - Zulkarami Berahim
- Laboratory of Climate-Smart Food Crop Production, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia
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14
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Zulkafflee NS, Mohd Redzuan NA, Hanafi Z, Selamat J, Ismail MR, Praveena SM, Abdull Razis AF. Heavy Metal in Paddy Soil and its Bioavailability in Rice Using In Vitro Digestion Model for Health Risk Assessment. Int J Environ Res Public Health 2019; 16:E4769. [PMID: 31795132 PMCID: PMC6926565 DOI: 10.3390/ijerph16234769] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/10/2019] [Revised: 10/24/2019] [Accepted: 10/26/2019] [Indexed: 12/20/2022]
Abstract
Rice ingestion is one of the major pathways for heavy metal bioaccumulation in human. This study aimed to measure the heavy metal content of paddy soils and its bioavailability in paddy grain in order to assess the health risk. In total, 10 rice samples (50 g each) of paddy plants were harvested from the Selangor and Terengganu areas of Malaysia to assess the bioavailability of heavy metal (As, Cd, Cu, Cr, and Pb) using the in vitro digestion model of Rijksinstituut voor Volksgezondheid en Milieu. The bioavailability of heavy metal concentrations in rice samples were analyzed using Inductively Coupled Plasma Mass Spectrometry (ICP-MS). The findings showed the bioavailability of heavy metal concentrations was decreased in the order Cr > Cu > Pb > As > Cd. Chromium was found to be the most abundant bioavailable heavy metal in cooked rice, which was the result of its high content in paddy soil. Hazard Quotient values for the bioavailability of the heavy metal studied were less than one indicating no non-carcinogenic health risks for adults and children. Meanwhile, the total Lifetime Cancer Risk exceeded the acceptable value showing a potential of carcinogenic health risk for both adults and children. The application of in vitro digestion model in assessing bioavailability of heavy metal produces a more realistic estimation of human health risks exposure. However, a regular monitoring of pollution in Selangor and Terengganu areas is crucial since the exposure of heavy metals through rice consumption poses the potential non-carcinogenic and carcinogenic health risk to the local residents.
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Affiliation(s)
- Nur Syahirah Zulkafflee
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia, Serdang 43400 UPM, Selangor, Malaysia; (N.S.Z.); (N.A.M.R.); (J.S.)
| | - Nurul Adillah Mohd Redzuan
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia, Serdang 43400 UPM, Selangor, Malaysia; (N.S.Z.); (N.A.M.R.); (J.S.)
| | - Zanjabila Hanafi
- Department of Environmental and Occupational Health, Faculty of Medicine and Health Sciences, Universiti Putra Malaysia, Serdang 43400 UPM, Selangor, Malaysia; (Z.H.); (S.M.P.)
| | - Jinap Selamat
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia, Serdang 43400 UPM, Selangor, Malaysia; (N.S.Z.); (N.A.M.R.); (J.S.)
- Laboratory of Food Safety and Food Integrity, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang 43400 UPM, Selangor, Malaysia
| | - Mohd Razi Ismail
- Laboratory of Climate-Smart Food Crop Production, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang 43400 UPM, Selangor, Malaysia;
| | - Sarva Mangala Praveena
- Department of Environmental and Occupational Health, Faculty of Medicine and Health Sciences, Universiti Putra Malaysia, Serdang 43400 UPM, Selangor, Malaysia; (Z.H.); (S.M.P.)
- Laboratory of Food Safety and Food Integrity, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang 43400 UPM, Selangor, Malaysia
| | - Ahmad Faizal Abdull Razis
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia, Serdang 43400 UPM, Selangor, Malaysia; (N.S.Z.); (N.A.M.R.); (J.S.)
- Laboratory of Food Safety and Food Integrity, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang 43400 UPM, Selangor, Malaysia
- Laboratory of Molecular Biomedicine, Institute of Bioscience, Universiti Putra Malaysia, Serdang 43400 UPM, Selangor, Malaysia
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15
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Lum SG, Gendeh BS, Husain S, Gendeh HS, Ismail MR, Toh CJ, Izaham A, Tan HJ. Internal carotid artery injury during endonasal sinus surgery: our experience and review of the literature. ACTA ACUST UNITED AC 2019; 39:130-136. [PMID: 30745587 PMCID: PMC6522866 DOI: 10.14639/0392-100x-1312] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2016] [Accepted: 10/05/2017] [Indexed: 11/23/2022]
Abstract
Iatrogenic internal carotid artery injury is a catastrophic but uncommon complication of endonasal sinus surgery. We present our experience in managing this emergency situation. A 52-year-old man underwent revision endoscopic repair of recurrent cerebrospinal fluid leak that was complicated with profuse haemorrhage during removal of the anterior wall of sphenoid sinus using a Hajek sphenoid punch forceps. Immediate packing of the sphenoid sinus controlled the haemorrhage. Urgent angiography revealed injury at the paraclival segment of the left internal carotid artery. An endovascular stent was initially placed but thrombosed; it was subsequently converted to coil embolisation. The patient had watershed cerebral infarct with hemiparesis post procedure but made full recovery within 6 weeks. Immediate nasal packing followed by urgent angiography and endovascular stent placement is the least invasive definitive treatment. If stenting is unsuccessful, endovascular balloon occlusion or coil embolisation is the next preferred treatment, if there is adequate cross-cerebral circulation. The success of treatment relies on its immediate management by a multidisciplinary team.
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Affiliation(s)
- S G Lum
- Department of Otorhinolaryngology, Head and Neck Surgery, Universiti Kebangsaan Malaysia Medical Centre (UKMMC), Kuala Lumpur, Malaysia
| | - B S Gendeh
- Department of Otorhinolaryngology, Head and Neck Surgery, Universiti Kebangsaan Malaysia Medical Centre (UKMMC), Kuala Lumpur, Malaysia
| | - S Husain
- Department of Otorhinolaryngology, Head and Neck Surgery, Universiti Kebangsaan Malaysia Medical Centre (UKMMC), Kuala Lumpur, Malaysia
| | - H S Gendeh
- Department of Otorhinolaryngology, Head and Neck Surgery, Universiti Kebangsaan Malaysia Medical Centre (UKMMC), Kuala Lumpur, Malaysia
| | - M R Ismail
- Department of Radiology, UKMMC, Kuala Lumpur, Malaysia
| | - C J Toh
- Neurosurgery Unit, Department of Surgery, UKMMC, Kuala Lumpur, Malaysia
| | - A Izaham
- Department of Anaesthesiology, UKMMC, Kuala Lumpur, Malaysia
| | - H J Tan
- Neurology Unit, Department of Medicine, UKMMC, Kuala Lumpur, Malaysia
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Kamarudin ZS, Yusop MR, Ismail MR, Tengku Muda Mohamed M, Harun AR, Yusuff O, Magaji U, Fatai A. LEA Gene Expression Assessment in Advanced Mutant Rice Genotypes under Drought Stress. Int J Genomics 2019. [PMID: 32083115 DOI: 10.3390/agronomy8120279] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/13/2023] Open
Abstract
Late embryogenesis abundant (LEA) proteins are primarily found in plants stem, roots, and other organs and play significant roles in tolerance to several abiotic stresses. Plants synthesize a discrete set of LEA proteins in response to drought stress. In this study, the expression patterns of LEA genes were investigated in two advanced mutant rice genotypes subjected to the drought stress condition and different physiological traits including photosynthetic rate, leaf chlorophyll content, and photosystem II (PSII) photochemical efficiency (Fv/Fm) which were analyzed to confirm their drought tolerance. Five LEA genes (OsLEA1, OsLEA2, OsLEA3, OsLEA4, and OsLEA5) were used in the evaluation of rice genotypes and were significantly upregulated by more than 4-fold for MR219-4 and MR219-9. The upregulated genes by these two varieties showed high similarity with the drought-tolerant check variety, Aeron1. This indicates that these advanced mutant genotypes have better tolerance to drought stress. The changes in the expression level of LEA genes among the selected rice genotypes under drought stress were further confirmed. Hence, LEA genes could be served as a potential tool for drought tolerance determination in rice. MR219-4 and MR219-9 were found to be promising in breeding for drought tolerance as they offer better physiological adaptation to drought stress.
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Affiliation(s)
- Zarifth Shafika Kamarudin
- Department of Crop Sciences, Faculty of Agriculture, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia
| | - Mohd Rafii Yusop
- Department of Crop Sciences, Faculty of Agriculture, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia
| | - Mohd Razi Ismail
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia
| | - Mahmud Tengku Muda Mohamed
- Department of Crop Sciences, Faculty of Agriculture, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia
| | - Abdul Rahim Harun
- Agrotechnology and Biosciences Division, Malaysian Nuclear Agency, 43600 Kajang, Selangor, Malaysia
| | - Oladosu Yusuff
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia
| | - Usman Magaji
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia
| | - Arolu Fatai
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia
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17
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Nevame AYM, Xia L, Nchongboh CG, Hasan MM, Alam MA, Yongbo L, Wenting Z, Yafei H, Emon RM, Ismail MR, Efisue A, Gang S, Wenhu L, Longting S. Development of a New Molecular Marker for the Resistance to Tomato Yellow Leaf Curl Virus. Biomed Res Int 2018; 2018:8120281. [PMID: 30105248 PMCID: PMC6076955 DOI: 10.1155/2018/8120281] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/09/2018] [Accepted: 06/21/2018] [Indexed: 11/25/2022]
Abstract
Tomato yellow leaf curl virus (TYLCV) responsible for tomato yellow leaf curl disease (TYLCD) causes a substantial decrease in tomato (Solanum lycopersicum L.) yield worldwide. The use of resistant variety as a sustainable management strategy has been advocated. Tremendous progress has been made in genetically characterizing the resistance genes (R gene) in tomato. Breeding tomato for TYLCV resistance has been based mostly on Ty-3 as a race-specific resistance gene by introgression originating from wild tomato species relatives. Improvement or development of a cultivar is achievable through the use of marker-assisted selection (MAS). Therefore, precise and easy use of gene-targeted markers would be of significant importance for selection in breeding programs. The present study was undertaken to develop a new marker based on Ty-3 gene sequence that can be used for MAS in TYLCV resistant tomato breeding program. The new developed marker was named ACY. The reliability and accuracy of ACY were evaluated against those of Ty-3 linked marker P6-25 through screening of commercial resistant and susceptible tomato hybrids, and genetic segregation using F2 population derived from a commercial resistant hybrid AG208. With the use of bioinformatics and DNA sequencing analysis tools, deletion of 10 nucleotides was observed in Ty-3 gene sequence for susceptible tomato variety. ACY is a co-dominant indel-based marker that produced clear and strong polymorphic band patterns for resistant plant distinguishing it from its susceptible counterpart. The obtained result correlates with 3:1 segregation ratio of single resistant dominant gene inheritance, which depicted ACY as gene-tag functional marker. This marker is currently in use for screening 968 hybrids varieties and one thousand breeding lines of tomato varieties stocked in Jiangsu Green Port Modern Agriculture Development Company (Green Port). So far, ACY has been used to identify 56 hybrids and 51 breeding lines. These newly detected breeding lines were regarded as potential source of resistance for tomato breeding. This work exploited the sequence of Ty-3 and subsequently contributed to the development of molecular marker ACY to aid phenotypic selection. We thus recommend this marker to breeders, which is suitable for marker-assisted selection in tomato.
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Affiliation(s)
- Adedze Yawo Mawunyo Nevame
- Molecular Biology Laboratory of Jiangsu Green Port Modern Agriculture Development Company, Nancai Township Road No. 1, Suqian City, Jiangsu Province 223800, China
| | - Lu Xia
- Molecular Biology Laboratory of Jiangsu Green Port Modern Agriculture Development Company, Nancai Township Road No. 1, Suqian City, Jiangsu Province 223800, China
| | | | - Muhammad Mahmudul Hasan
- Bangladesh Institute of Nuclear Agriculture, BAU Campus, Mymensingh 2202, Bangladesh
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia (UPM), 43400 Serdang, Selangor, Malaysia
| | - Md. Amirul Alam
- Faculty of Sustainable Agriculture, Horticulture and Landscaping Program, Universiti Malaysia Sabah, Sandakan Campus, 90509 Sandakan, Sabah, Malaysia
| | - Li Yongbo
- Molecular Biology Laboratory of Jiangsu Green Port Modern Agriculture Development Company, Nancai Township Road No. 1, Suqian City, Jiangsu Province 223800, China
| | - Zhang Wenting
- Molecular Biology Laboratory of Jiangsu Green Port Modern Agriculture Development Company, Nancai Township Road No. 1, Suqian City, Jiangsu Province 223800, China
| | - He Yafei
- College of Life Science, Nanjing Agricultural University, Nanjing 210095, China
| | - Reza Mohammad Emon
- Bangladesh Institute of Nuclear Agriculture, BAU Campus, Mymensingh 2202, Bangladesh
| | - Mohd Razi Ismail
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia (UPM), 43400 Serdang, Selangor, Malaysia
| | - Andrew Efisue
- Departments of Crop and Soil Science, University of Port Harcourt, Port Harcourt, Nigeria
| | - Sun Gang
- Molecular Biology Laboratory of Jiangsu Green Port Modern Agriculture Development Company, Nancai Township Road No. 1, Suqian City, Jiangsu Province 223800, China
| | - Li Wenhu
- Molecular Biology Laboratory of Jiangsu Green Port Modern Agriculture Development Company, Nancai Township Road No. 1, Suqian City, Jiangsu Province 223800, China
| | - Si Longting
- Molecular Biology Laboratory of Jiangsu Green Port Modern Agriculture Development Company, Nancai Township Road No. 1, Suqian City, Jiangsu Province 223800, China
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18
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Golestan Hashemi FS, Ismail MR, Rafii MY, Aslani F, Miah G, Muharam FM. Critical multifunctional role of the betaine aldehyde dehydrogenase gene in plants. BIOTECHNOL BIOTEC EQ 2018. [DOI: 10.1080/13102818.2018.1478748] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022] Open
Affiliation(s)
- Farahnaz Sadat Golestan Hashemi
- Gembloux Agro-Bio Tech, University of Liege, Leige, Belgium
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Mohd Razi Ismail
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Mohd Y. Rafii
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Farzad Aslani
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Gous Miah
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Farah Melissa Muharam
- Department of Agricultural Technology, Faculty of Agriculture, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
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Ma NL, Che Lah WA, Abd. Kadir N, Mustaqim M, Rahmat Z, Ahmad A, Lam SD, Ismail MR. Susceptibility and tolerance of rice crop to salt threat: Physiological and metabolic inspections. PLoS One 2018; 13:e0192732. [PMID: 29489838 PMCID: PMC5831039 DOI: 10.1371/journal.pone.0192732] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2017] [Accepted: 01/29/2018] [Indexed: 01/07/2023] Open
Abstract
Salinity threat is estimated to reduce global rice production by 50%. Comprehensive analysis of the physiological and metabolite changes in rice plants from salinity stress (i.e. tolerant versus susceptible plants) is important to combat higher salinity conditions. In this study, we screened a total of 92 genotypes and selected the most salinity tolerant line (SS1-14) and most susceptible line (SS2-18) to conduct comparative physiological and metabolome inspections. We demonstrated that the tolerant line managed to maintain their water and chlorophyll content with lower incidence of sodium ion accumulation. We also examined the antioxidant activities of these lines: production of ascorbate peroxidase (APX) and catalase (CAT) were significantly higher in the sensitive line while superoxide dismutase (SOD) was higher in the tolerant line. Partial least squares discriminant analysis (PLS-DA) score plots show significantly different response for both lines after the exposure to salinity stress. In the tolerant line, there was an upregulation of non-polar metabolites and production of sucrose, GABA and acetic acid, suggesting an important role in salinity adaptation. In contrast, glutamine and putrescine were noticeably high in the susceptible rice. Coordination of different strategies in tolerant and susceptible lines show that they responded differently after exposure to salt stress. These findings can assist crop development in terms of developing tolerance mechanisms for rice crops.
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Affiliation(s)
- Nyuk Ling Ma
- School of Fundamental Science, Universiti Malaysia Terengganu, Kuala Terengganu, Terengganu, Malaysia
- * E-mail:
| | - Wan Afifudeen Che Lah
- School of Fundamental Science, Universiti Malaysia Terengganu, Kuala Terengganu, Terengganu, Malaysia
| | - Nisrin Abd. Kadir
- School of Fundamental Science, Universiti Malaysia Terengganu, Kuala Terengganu, Terengganu, Malaysia
| | - Mohamad Mustaqim
- School of Fundamental Science, Universiti Malaysia Terengganu, Kuala Terengganu, Terengganu, Malaysia
| | - Zaidah Rahmat
- Department of Biotechnology and Medical Engineering, University Technology Malaysia, Skudai, Johor, Malaysia
| | - Aziz Ahmad
- School of Fundamental Science, Universiti Malaysia Terengganu, Kuala Terengganu, Terengganu, Malaysia
| | - Su Datt Lam
- School of Biosciences and Biotechnology, Faculty of Science and Technology, University Kebangsaan Malaysia, Bangi, Selangor, Malaysia
- Institute of Structural and Molecular Biology, Division of Biosciences, University College London, Gower Street, London, United Kingdom
| | - Mohd Razi Ismail
- Institute of Tropical Agriculture, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
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Lai L, Ismail MR, Muharam FM, Yusof MM, Ismail R, Jaafar NM. Effects of Rice Straw Biochar and Nitrogen Fertilizer on Rice Growth and Yield. ACTA ACUST UNITED AC 2017. [DOI: 10.3923/ajcs.2017.159.166] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Golestan Hashemi FS, Razi Ismail M, Rafii Yusop M, Golestan Hashemi MS, Nadimi Shahraki MH, Rastegari H, Miah G, Aslani F. Intelligent mining of large-scale bio-data: Bioinformatics applications. BIOTECHNOL BIOTEC EQ 2017. [DOI: 10.1080/13102818.2017.1364977] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Affiliation(s)
- Farahnaz Sadat Golestan Hashemi
- Plant Genetics, AgroBioChem Department, Gembloux Agro-Bio Tech, University of Liege, Liege, Belgium
- Laboratory of Food Crops, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Mohd Razi Ismail
- Laboratory of Food Crops, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Mohd Rafii Yusop
- Laboratory of Food Crops, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Mahboobe Sadat Golestan Hashemi
- Department of Software Engineering, Faculty of Computer Engineering, Najafabad Branch, Islamic Azad University, Isfahan,Iran
- Big Data Research Center, Najafabad Branch, Islamic Azad University, Isfahan, Iran
| | - Mohammad Hossein Nadimi Shahraki
- Department of Software Engineering, Faculty of Computer Engineering, Najafabad Branch, Islamic Azad University, Isfahan,Iran
- Big Data Research Center, Najafabad Branch, Islamic Azad University, Isfahan, Iran
| | - Hamid Rastegari
- Department of Software Engineering, Faculty of Computer Engineering, Najafabad Branch, Islamic Azad University, Isfahan,Iran
| | - Gous Miah
- Laboratory of Food Crops, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Farzad Aslani
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
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Dorairaj D, Ismail MR. Distribution of Silicified Microstructures, Regulation of Cinnamyl Alcohol Dehydrogenase and Lodging Resistance in Silicon and Paclobutrazol Mediated Oryza sativa. Front Physiol 2017; 8:491. [PMID: 28747889 PMCID: PMC5506179 DOI: 10.3389/fphys.2017.00491] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2017] [Accepted: 06/27/2017] [Indexed: 11/13/2022] Open
Abstract
Lodging is a phenomenon that affects most of the cereal crops including rice, Oryza sativa. This is due to the fragile nature of herbaceous plants whose stems are non-woody, thus affecting its ability to grow upright. Silicon (Si), a beneficial nutrient is often used to toughen and protect plants from biotic and abiotic stresses. Deposition of Si in plant tissues enhances the rigidity and stiffness of the plant as a whole. Silicified cells provide the much needed strength to the culm to resist breaking. Lignin plays important roles in cell wall structural integrity, stem strength, transport, mechanical support, and plant pathogen defense. The aim of this study is to resolve effects of Si on formation of microstructure and regulation of cinnamyl alcohol dehydrogenase (CAD), a key gene responsible for lignin biosynthesis. Besides evaluating silicon, paclobutrazol (PBZ) a plant growth retartdant that reduces internode elongation is also incorporated in this study. Hardness, brittleness and stiffness were improved in presence of silicon thus reducing lodging. Scanning electron micrographs with the aid of energy dispersive x-ray (EDX) was used to map silicon distribution. Presence of trichomes, silica cells, and silica bodies were detected in silicon treated plants. Transcripts of CAD gene was also upregulated in these plants. Besides, phloroglucinol staining showed presence of lignified vascular bundles and sclerenchyma band. In conclusion, silicon treated rice plants showed an increase in lignin content, silicon content, and formation of silicified microstructures.
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Affiliation(s)
- Deivaseeno Dorairaj
- Department of Crop Science, Faculty of Agriculture, Universiti Putra MalaysiaSerdang, Malaysia
| | - Mohd Razi Ismail
- Department of Crop Science, Faculty of Agriculture, Universiti Putra MalaysiaSerdang, Malaysia.,Laboratory of Climate-Smart Food Crop Production, Institute of Tropical Agriculture and Food Security, Universiti Putra MalaysiaSerdang, Malaysia
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Welland CM, Yusop MR, Ismail MR, Juraimi AS, Harun AR, Ahmed F, Tanweer FA, Abdul Latif M. Analysis of Simple Sequence Repeat Markers Linked to Submergence Tolerance on Newly Developed Rice Lines Derived from MR263 × Swarna-Sub1. SAINS MALAYS 2017. [DOI: 10.17576/jsm-2017-4604-02] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Hasan MM, Rafii MY, Ismail MR, Mahmood M, Alam MA, Abdul Rahim H, Malek MA, Latif MA. Introgression of blast resistance genes into the elite rice variety MR263 through marker-assisted backcrossing. J Sci Food Agric 2016; 96:1297-1305. [PMID: 25892666 DOI: 10.1002/jsfa.7222] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2014] [Revised: 04/06/2015] [Accepted: 04/14/2015] [Indexed: 06/04/2023]
Abstract
BACKGROUND Blast caused by the fungus Magnaporthe oryzae is a significant disease threat to rice across the world and is especially prevalent in Malaysia. An elite, early-maturing, high-yielding Malaysian rice variety, MR263, is susceptible to blast and was used as the recurrent parent in this study. To improve MR263 disease resistance, the Pongsu Seribu 1 rice variety was used as donor of the blast resistance Pi-7(t), Pi-d(t)1 and Pir2-3(t) genes and qLN2 quantitative trait locus (QTL). The objective was to introgress these blast resistance genes into the background of MR263 using marker-assisted backcrossing with both foreground and background selection. RESULTS Improved MR263-BR-3-2, MR263-BR-4-3, MR263-BR-13-1 and MR263-BR-26-4 lines carrying the Pi-7(t), Pi-d(t)1 and Pir2-3(t) genes and qLN2 QTL were developed using the simple sequence repeat (SSR) markers RM5961 and RM263 (linked to the blast resistance genes and QTL) for foreground selection and a collection of 65 polymorphic SSR markers for background selection in backcrossed and selfed generations. A background analysis revealed that the highest rate of recurrent parent genome recovery was 96.1% in MR263-BR-4-3 and 94.3% in MR263-BR-3-2. CONCLUSION The addition of blast resistance genes can be used to improve several Malaysian rice varieties to combat this major disease.
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Affiliation(s)
- Muhammad M Hasan
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400, UPM Serdang, Selangor, Malaysia
| | - Mohd Y Rafii
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400, UPM Serdang, Selangor, Malaysia
- Laboratory of Food Crops, Institute of Tropical Agriculture, Universiti Putra Malaysia, 43400, UPM Serdang, Selangor, Malaysia
| | - Mohd Razi Ismail
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400, UPM Serdang, Selangor, Malaysia
| | - Maziah Mahmood
- Deparment of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, UPM Serdang, Selangor, Malaysia
| | - Md Amirul Alam
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400, UPM Serdang, Selangor, Malaysia
| | - Harun Abdul Rahim
- Agrotechnology and Bioscience Division, Malaysian Nuclear Agency, Bangi, 43000, Kajang, Selangor, Malaysia
| | - Mohammad A Malek
- Bangladesh Institute of Nuclear agriculture (BINA), BAU Campus, 2202, Mymensingh, Bangladesh
| | - Mohammad Abdul Latif
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400, UPM Serdang, Selangor, Malaysia
- Bangladesh Rice Research Institute (BRRI), 1701, Gazipur, Bangladesh
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Hakim MA, Juraimi AS, Hanafi MM, Rafii MY, Ismail MR, Karim SMR, Kausar H. Integration of herbicides with manual weeding for controlling the weeds in rice under saline environment. J Environ Biol 2015; 36:1311-1317. [PMID: 26688966] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
The pot experiment was conducted to select appropriate integrated weed management method in rice under different salinity levels (0, 4 and 8 dS m(-1)). All the parameters including rice and weed measured were significantly influenced by weed control treatments at all salinity levels. Treatments including weed-free condition, Pretilachlor @0.375 kg ai ha(-1) + hand weeding, Propanil + Thiobencarb @ 0.9 kg ai ha(-1) and 1.8 kg ai ha(-1)+ hand weeding performed better under all salinity levels. Pretilachlor @ 0.375 kg ai ha(-1) with one round of hand weeding and propanil + thiobencarb 0.9 kg ai ha(-1) + 1.8 kg ai ha(-1) with one round of hand weeding were comparable to weed-free yields, and were superior to other treatments under salinity condition. Considering all the parameters, pretilachlor @ 0.375 kg ai ha(-1) + one round of hand weeding (at 65 DAT), propanil + thiobencarb 0.9 kg ai ha(-1) +1.8 kg ai ha(-1) + one round of hand weeding (at 65 DAT) gave the most effective control of weeds in rice under saline environments.
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Golestan Hashemi FS, Rafii MY, Ismail MR, Mohamed MTM, Rahim HA, Latif MA, Aslani F. Application of an Effective Statistical Technique for an Accurate and Powerful Mining of Quantitative Trait Loci for Rice Aroma Trait. PLoS One 2015; 10:e0129069. [PMID: 26061689 PMCID: PMC4464510 DOI: 10.1371/journal.pone.0129069] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2014] [Accepted: 05/04/2015] [Indexed: 11/19/2022] Open
Abstract
When a phenotype of interest is associated with an external/internal covariate, covariate inclusion in quantitative trait loci (QTL) analyses can diminish residual variation and subsequently enhance the ability of QTL detection. In the in vitro synthesis of 2-acetyl-1-pyrroline (2AP), the main fragrance compound in rice, the thermal processing during the Maillard-type reaction between proline and carbohydrate reduction produces a roasted, popcorn-like aroma. Hence, for the first time, we included the proline amino acid, an important precursor of 2AP, as a covariate in our QTL mapping analyses to precisely explore the genetic factors affecting natural variation for rice scent. Consequently, two QTLs were traced on chromosomes 4 and 8. They explained from 20% to 49% of the total aroma phenotypic variance. Additionally, by saturating the interval harboring the major QTL using gene-based primers, a putative allele of fgr (major genetic determinant of fragrance) was mapped in the QTL on the 8th chromosome in the interval RM223-SCU015RM (1.63 cM). These loci supported previous studies of different accessions. Such QTLs can be widely used by breeders in crop improvement programs and for further fine mapping. Moreover, no previous studies and findings were found on simultaneous assessment of the relationship among 2AP, proline and fragrance QTLs. Therefore, our findings can help further our understanding of the metabolomic and genetic basis of 2AP biosynthesis in aromatic rice.
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Affiliation(s)
| | - Mohd Y. Rafii
- Institute of Tropical Agriculture, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
- * E-mail: (FSGH); (MYR)
| | - Mohd Razi Ismail
- Institute of Tropical Agriculture, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
| | - Mahmud Tengku Muda Mohamed
- Institute of Tropical Agriculture, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
| | - Harun A. Rahim
- Bioscience and Agrotechnology Division, Malaysian Nuclear Agency, Bangi, 43000, Kajang, Selangor, Malaysia
| | - Mohammad Abdul Latif
- Institute of Tropical Agriculture, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia
- Bangladesh Rice Research Institute (BRRI), Gazipur, 1701, Bangladesh
| | - Farzad Aslani
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
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Golestan Hashemi FS, Rafii MY, Ismail MR, Mohamed MTM, Rahim HA, Latif MA, Aslani F. The genetic and molecular origin of natural variation for the fragrance trait in an elite Malaysian aromatic rice through quantitative trait loci mapping using SSR and gene-based markers. Gene 2014; 555:101-7. [PMID: 25445269 DOI: 10.1016/j.gene.2014.10.048] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2014] [Revised: 10/09/2014] [Accepted: 10/27/2014] [Indexed: 02/06/2023]
Abstract
MRQ74, a popular aromatic Malaysian landrace, allows for charging considerably higher prices than non-aromatic landraces. Thus, breeding this profitable trait has become a priority for Malaysian rice breeding. Despite many studies on aroma genetics, ambiguities considering its genetic basis remain. It has been observed that identifying quantitative trait loci (QTLs) based on anchor markers, particularly candidate genes controlling a trait of interest, can increase the power of QTL detection. Hence, this study aimed to locate QTLs that influence natural variations in rice scent using microsatellites and candidate gene-based sequence polymorphisms. For this purpose, an F2 mapping population including 189 individual plants was developed by MRQ74 crosses with 'MR84', a non-scented Malaysian accession. Additionally, qualitative and quantitative approaches were applied to obtain a phenotype data framework. Consequently, we identified two QTLs on chromosomes 4 and 8. These QTLs explained from 3.2% to 39.3% of the total fragrance phenotypic variance. In addition, we could resolve linkage group 8 by adding six gene-based primers in the interval harboring the most robust QTL. Hence, we could locate a putative fgr allele in the QTL found on chromosome 8 in the interval RM223-SCU015RM (1.63cM). The identified QTLs represent an important step toward recognition of the rice flavor genetic control mechanism. In addition, this identification will likely accelerate the progress of the use of molecular markers for gene isolation, gene-based cloning, and marker-assisted selection breeding programs aimed at improving rice cultivars.
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Affiliation(s)
| | - Mohd Y Rafii
- Institute of Tropical Agriculture, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia; Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia.
| | - Mohd Razi Ismail
- Institute of Tropical Agriculture, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia; Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia
| | - Mahmud Tengku Muda Mohamed
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia
| | - Harun A Rahim
- Bioscience and Agrotechnology Division, Malaysian Nuclear Agency, Bangi, 43000 Kajang, Selangor, Malaysia
| | - Mohammad Abdul Latif
- Institute of Tropical Agriculture, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia; Bangladesh Rice Research Institute (BRRI), Gazipur 1701, Bangladesh
| | - Farzad Aslani
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia
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Hakim MA, Juraimi AS, Hanafi MM, Ismail MR, Rafii MY, Aslani F, Selamat A. The effect of salinity on chlorophyll, proline and mineral nutrients in common weeds of coastal rice fields in Malaysia. J Environ Biol 2014; 35:855-864. [PMID: 25204059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Six weed species (Leptochola chinensis, Echinochloa crus-galli, Echinochloa colona, Jussiaea linifolia, Oryza sativa (weedy rice) and Cyperus iria) were tested for their salt tolerant traits in terms of chlorophyll, proline and mineral nutrients accumulation against different salinity levels (0, 4, 8, 16, 24, 32, and 40 dS m(-1)). Chlorophyll a, b and total chlorophyll content, proline and mineral nutrients accumulation were determined. Salt stress showed prominent effect on all the parameters investigated and there were significant variations between the all weed species. Chlorophyll content, K+, Ca(2+) and Mg(2+) ions in both shoots and roots significantly decreased; while proline and Na+ accumulation significantly increased with increasing salinity up to 40 dS m(-1). In terms of overall performance, Cyperus iria and E. crus-galliwere relatively more tolerant; E. colona and J. linifolia were tolerant; L. chinensis and O. sativa L were salt sensitive, respectively.
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Phing Lau WC, Latif MA, Y Rafii M, Ismail MR, Puteh A. Advances to improve the eating and cooking qualities of rice by marker-assisted breeding. Crit Rev Biotechnol 2014; 36:87-98. [PMID: 24937109 DOI: 10.3109/07388551.2014.923987] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
The eating and cooking qualities of rice are heavily emphasized in breeding programs because they determine market values and they are the appealing attributes sought by consumers. Conventional breeding has developed traditional varieties with improved eating and cooking qualities. Recently, intensive genetic studies have pinpointed the genes that control eating and cooking quality traits. Advances in genetic studies have developed molecular techniques, thereby allowing marker-assisted breeding (MAB) for improved eating and cooking qualities in rice. MAB has gained the attention of rice breeders for the advantages it can offer that conventional breeding cannot. There have been successful cases of using MAB to improve the eating and cooking qualities in rice over the years. Nevertheless, MAB should be applied cautiously given the intensive effort needed for genotyping. Perspectives from conventional breeding to marker-assisted breeding will be discussed in this review for the advancement of the eating and cooking qualities of fragrance, amylose content (AC), gel consistency (GC) and gelatinization temperature (GT) in rice. These four parameters are associated with eating and cooking qualities in rice. The genetic basis of these four parameters is also included in this review. MAB is another approach to rice variety improvement and development in addition to being an alternative to genetic engineering. The MAB approach shortens the varietal development time, and is therefore able to deliver improved rice varieties to farmers within a shorter period of time.
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Affiliation(s)
- Wendy Chui Phing Lau
- a Department of Crop Science, Faculty of Agriculture , Universiti Putra Malaysia , Serdang , Selangor , Malaysia
| | - Mohammad Abdul Latif
- a Department of Crop Science, Faculty of Agriculture , Universiti Putra Malaysia , Serdang , Selangor , Malaysia .,b Bangladesh Rice Research Institute (BRRI) , Gazipur , Bangladesh , and
| | - Mohd Y Rafii
- a Department of Crop Science, Faculty of Agriculture , Universiti Putra Malaysia , Serdang , Selangor , Malaysia .,c Institute of Tropical Agriculture, Universiti Putra Malaysia , Serdang , Selangor , Malaysia
| | - Mohd Razi Ismail
- a Department of Crop Science, Faculty of Agriculture , Universiti Putra Malaysia , Serdang , Selangor , Malaysia .,c Institute of Tropical Agriculture, Universiti Putra Malaysia , Serdang , Selangor , Malaysia
| | - Adam Puteh
- a Department of Crop Science, Faculty of Agriculture , Universiti Putra Malaysia , Serdang , Selangor , Malaysia
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Hakim MA, Juraimi AS, Hanafi MM, Ali E, Ismail MR, Selamat A, Karim SMR. Effect of salt stress on morpho-physiology, vegetative growth and yield of rice. J Environ Biol 2014; 35:317-326. [PMID: 24665756] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Selection of salt tolerant rice varieties has a huge impact on global food supply chain. Five Malaysian rice (Oryza sativa L.) varieties, MR33, MR52, MR211, MR219 and MR232 were tested in pot experiment under different salinity levels for their response in term of vegetative growth, physiological activities, development of yield components and grain yield. Rice varieties, BRRI dhan29 and IR20 were used as a salt-sensitive control and Pokkali was used as a salt-tolerant control. Three different salinity levels viz. 4, 8, and 12 dS m(-1) were used in a randomized complete block design with four replications under glass house conditions. Two Malaysia varieties, MR211 and MR232 performed better in terms of vegetative growth (plant height, leaf area plant(-1), number of tillers plant(-1), dry matter accumulation plant(-1)), photosynthetic rate, transpiration rate, yield components, grain yield and injury symptoms. While, MR33, MR52 and MR219 verities were able to withstand salinity stress over salt-sensitive control, BRRI dhan29 and IR20.
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Zain NAM, Ismail MR, Mahmood M, Puteh A, Ibrahim MH. Alleviation of water stress effects on MR220 rice by application of periodical water stress and potassium fertilization. Molecules 2014; 19:1795-819. [PMID: 24504074 PMCID: PMC6271937 DOI: 10.3390/molecules19021795] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2013] [Revised: 01/21/2014] [Accepted: 01/23/2014] [Indexed: 01/08/2023] Open
Abstract
The use of periodical water stress and potassium fertilization may enhance rice tolerance to drought stress and improve the crop’s instantaneous water use efficiency without much yield reduction. This study was conducted to assess the effects of different periodical water stress combined with potassium fertilization regimes on growth, yield, leaf gas exchanges and biochemical changes in rice grown in pots and compare them with standard local rice grower practices. Five treatments including (1) standard local grower’s practice (control, 80CF = 80 kg K2O/ha + control flooding); (2) 120PW15 = 120 kg K2O/ha + periodical water stress for 15 days; (3) 120DS15V = 120 kg K2O/ha + drought stress for 15 days during the vegetative stage; (4) 120DS25V = 120 kg K2O/ha + drought stress for 25 days and (5) 120DS15R = 120 kg K2O/ha + drought stress for 15 days during the reproductive stage, were evaluated in this experiment. Control and 120PW15 treatments were stopped at 100 DAS, and continuously saturated conditions were applied until harvest. It was found that rice under 120PW15 treatment showed tolerance to drought stress evidenced by increased water use efficiency, peroxidase (POX), catalase (CAT) and proline levels, maximum efficiency of photosystem II (fv/fm) and lower minimal fluorescence (fo), compared to other treatments. Path coefficient analysis revealed that most of parameters contribute directly rather than indirectly to rice yield. In this experiment, there were four factors that are directly involved with rice yield: grain soluble sugar, photosynthesis, water use efficiency and total chlorophyll content. The residual factors affecting rice yield are observed to be quite low in the experiment (0.350), confirming that rice yield was mostly influenced by the parameters measured during the study.
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Affiliation(s)
- Nurul Amalina Mohd Zain
- Institute of Tropical Agriculture, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor Darul Ehsan, Malaysia.
| | - Mohd Razi Ismail
- Institute of Tropical Agriculture, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor Darul Ehsan, Malaysia.
| | - Maziah Mahmood
- Department of Biochemistry, Faculty of Bioctechnology and Biomolecular Science, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor Darul Ehsan, Malaysia.
| | - Adam Puteh
- Department of Crop Science, Faculty of Agriculture Science, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor Darul Ehsan, Malaysia.
| | - Mohd Hafiz Ibrahim
- Department of Biology, Faculty of Science, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor Darul Ehsan, Malaysia.
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Mondal MMA, Puteh AB, Malek MA, Ismail MR, Rafii MY, Latif MA. Seed yield of mungbean (Vigna radiata (L.) Wilczek) in relation to growth and developmental aspects. ScientificWorldJournal 2012; 2012:425168. [PMID: 22919319 PMCID: PMC3419418 DOI: 10.1100/2012/425168] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2012] [Accepted: 05/23/2012] [Indexed: 11/17/2022] Open
Abstract
Growth parameters such as leaf area (LA), total dry mass (TDM) production, crop growth rate (CGR), relative growth rate (RGR), and net assimilation rate (NAR) were compared in six varieties of mungbean under subtropical condition (24°8′ N 90°0′ E) to identify limiting growth characters for the efficient application of physiology breeding for higher yields. Results revealed that a relatively smaller portion of TDM was produced before flower initiation and the bulk of it after anthesis. The maximum CGR was observed during pod filling stage in all the varieties due to maximum leaf area (LA) development at this stage. Two plant characters such as LA and CGR contributed to the higher TDM production. Results indicated that high yielding mungbean varieties should possess larger LA, higher TDM production ability, superior CGR at all growth stages, and high relative growth rate and net assimilation rate at vegetative stage which would result in superior yield components.
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Affiliation(s)
- M M A Mondal
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia (UPM), 43400 Serdang, Selangor, Malaysia. ma
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Uddin MK, Juraimi AS, Ali ME, Ismail MR. Evaluation of antioxidant properties and mineral composition of Purslane (Portulaca oleracea L.) at different growth stages. Int J Mol Sci 2012; 13:10257-10267. [PMID: 22949859 PMCID: PMC3431857 DOI: 10.3390/ijms130810257] [Citation(s) in RCA: 78] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Revised: 08/16/2012] [Accepted: 08/16/2012] [Indexed: 11/16/2022] Open
Abstract
The main objective of this research was to appraise the changes in mineral content and antioxidant attributes of Portulaca oleracea over different growth stages. The antioxidant activity was measured using 1,1-diphenyl-2-picrylhydrazyl (DPPH), ferric-reducing antioxidant power (FRAP) assays. The iodine titration method was used to determine the ascorbic acid content (AAC). DPPH scavenging (IC(50)) capacity ranged from 1.30 ± 0.04 to 1.71 ± 0.04 mg/mL, while the ascorbic acid equivalent antioxidant activity (AEAC) values were 229.5 ± 7.9 to 319.3 ± 8.7 mg AA/100 g, total phenol content (TPC) varied from 174.5 ± 8.5 to 348.5 ± 7.9 mg GAE/100 g. AAC 60.5 ± 2.1 to 86.5 ± 3.9 mg/100 g and FRAP 1.8 ± 0.1 to 4.3 ± 0.1 mg GAE/g. There was good correlation between the results of TPC and AEAC, and between IC(50) and FRAP assays (r(2) > 0.9). The concentrations of Ca, Mg, K, Fe and Zn increased with plant maturity. Calcium (Ca) was negatively correlated with sodium (Na) and chloride (Cl), but positively correlated with magnesium (Mg), potassium (K), iron (Fe) and zinc (Zn). Portulaca olerecea cultivars could be used as a source of minerals and antioxidants, especially for functional food and nutraceutical applications.
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Affiliation(s)
- Md. Kamal Uddin
- Institute of Tropical Agriculture, University Putra Malaysia, Serdang 09800, Malaysia; E-Mail:
- Author to whom correspondence should be addressed; E-Mail: ; Tel.: +60-8946-8967; Fax: +60-8946-8968
| | - Abdul Shukor Juraimi
- Department of Crop Science, Faculty of Agriculture, University Putra Malaysia, Serdang 09800, Malaysia; E-Mail:
| | - Md. Eaqub Ali
- Nanotechnology and Catalysis Research Center, University of Malaya, Kuala Lumpur 50603, Malaysia; E-Mail:
| | - Mohd Razi Ismail
- Institute of Tropical Agriculture, University Putra Malaysia, Serdang 09800, Malaysia; E-Mail:
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Malek MA, Ismail MR, Rafii MY, Rahman M. Synthetic Brassica napus L.: development and studies on morphological characters, yield attributes, and yield. ScientificWorldJournal 2012; 2012:416901. [PMID: 22701356 PMCID: PMC3373182 DOI: 10.1100/2012/416901] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2012] [Accepted: 03/27/2012] [Indexed: 11/17/2022] Open
Abstract
Brassica napus was synthesized by hybridization between its diploid progenitor species B. rapa and B. oleracea followed by chromosome doubling. Cross with B. rapa as a female parent was only successful. Among three colchicine treatments (0.10, 0.15, and 0.20%), 0.15% gave the highest success (86%) of chromosome doubling in the hybrids (AC; 2n = 19). Synthetic B. napus (AACC, 2n = 38) was identified with bigger petals, fertile pollens and seed setting. Synthetic B. napus had increased growth over parents and exhibited wider ranges with higher coefficients of variations than parents for morphological and yield contributing characters, and yield per plant. Siliqua length as well as beak length in synthetic B. napus was longer than those of the parents. Number of seeds per siliqua, 1000-seed weight and seed yield per plant in synthetic B. napus were higher than those of the parents. Although flowering time in synthetic B. napus was earlier than both parents, however the days to maturity was little higher over early maturing B. rapa parent. The synthesized B. napus has great potential to produce higher seed yield. Further screening and evaluation is needed for selection of desirable genotypes having improved yield contributing characters and higher seed yield.
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Affiliation(s)
- M A Malek
- Plant Breeding Division, Bangladesh Institute of Nuclear Agriculture, Mymensingh 2202, Bangladesh.
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Uddin K, Juraimi AS, Ismail MR, Hossain A, Othman R, Abdul Rahim A. Physiological and growth responses of six turfgrass species relative to salinity tolerance. ScientificWorldJournal 2012; 2012:905468. [PMID: 22666166 PMCID: PMC3366220 DOI: 10.1100/2012/905468] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2012] [Accepted: 02/26/2012] [Indexed: 11/29/2022] Open
Abstract
The demand for salinity-tolerant turfgrasses is increasing due to augmented use of effluent or low-quality water (sea water) for turf irrigation and the growing turfgrass industry in coastal areas. Experimental plants, grown in plastic pots filled with a mixture of river sand and KOSASR peat (9 : 1), were irrigated with sea water at different dilutions imparting salinity levels of 0, 8, 16, 24, 32, 40, or 48 dS m−1. Salinity tolerance was evaluated on the basis of leaf firing, shoot and root growth reduction, proline content, and relative water content. Paspalum vaginatum was found to be most salt tolerant followed by Zoysia japonica and Zoysia matrella, while Digitaria didactyla, Cynodon dactylon “Tifdwarf,” and Cynodon dactylon “Satiri” were moderately tolerant. The results indicate the importance of turfgrass varietal selection for saline environments.
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Affiliation(s)
- Kamal Uddin
- Institute of Tropical Agriculture, Universiti Putra Malaysia, Selangor, 43400 Serdang, Malaysia.
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Hakim MA, Juraimi AS, Hanafi MM, Selamat A, Ismail MR, Karim SMR. Studies on seed germination and growth in weed species of rice field under salinity stress. J Environ Biol 2011; 32:529-536. [PMID: 22319865] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
An investigation was made to see the salt tolerance of 10 weed species of rice. Properly dried and treated seeds of weed species were placed on 9 cm diameter petridishes lined with Whatman No. 1 filter paper under 6 salinity regimes, viz. 0 (control), 4, 8, 16, 24 and 32 dS m(-1). The petri dishes were then kept in germinator at 25 +/- 1.0 degrees C and 12 hr light. The number of germinated seeds were recorded daily. The final germination percentage, germination index (GI), seedling vigour index, mean germination time and time for 50% germination were estimated. Root and shoot lengths of the weed seedlings were measured at 20 days after salt application and relative growth values were calculated. Results revealed that salinity decreased final germination percentage, seed of germination as measured by GI, and shoot and root length in all the species. Germination of most of the weed seeds was completely arrested (0) at 32 dS m(-1) salinity except in E. colona (12%) and C. iria (13.9%). The species C. iria, E. colona, J. linifolia and E. crusgalli showed better germination (above 30%) upto 24 dS m(-1) salinity level and were regarded as salt-tolerant weed species. J. linifolia, F. miliacea, L. chinensis and O. sativa L. (weedy rice) were graded as moderately tolerant and S. zeylanica, S. grosus and C. difformis were regarded as least tolerant weed species.
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Affiliation(s)
- M A Hakim
- Institute of Tropical Agriculture, University Putra Malaysia, 43400 UPM Serdang, Malaysia
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Uddin KM, Juraimi AS, Ismail MR, Othman R, Rahim AA. Relative salinity tolerance of warm season turfgrass species. J Environ Biol 2011; 32:309-312. [PMID: 22167942] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Fresh water, coupled with soil salinization in many areas has resulted in an increased need forscreening of salt tolerant turf grasses. Relative salinity tolerance of eightwarm season turfgrass species were examined in this study in sand culture. Grasses were grown in a glasshouse, irrigated with either distilled water or saline sea water adjusted to 24, 48 or 72 dSm-1. Salt tolerances of the grasses were assessed on the basis of their shoot and root growth, leaf firing and turf quality. Regression analysis indicated that Zoysiajaponica (Japanese lawn grass) (JG), Stenotaphrum secundatum (St. Augustine) (SA), Cynodon dactylon (satiri) (BS), Zoysia teneuifolia (Korean grass) (KG), Digitaria didactyla (Serangoon grass) (SG), Cynodon dactylon (Tifdwarf) (TD), Paspalum notatum (Bahia grass) (BG) and Axonopus compressus(Pearl blue) (PB) suffered a 50% shoot growth reduction at 36.0, 31.8, 30.9, 28.4, 26.4, 25.7, 20.0 and 18.6 dSm1 of salinity, respectively and a root growth reduction at44.9, 43.7, 33.4, 31.0, 29.5 27.5, 21.5 and 21.4 dSm- of salinity, respectively. Leaf firing and turf quality of the selected species, as a whole, were also found to be affected harmoniously with the change in root and shoot growth. On the basis of the experimental results the selected species were ranked for salinity tolerance as JG>SA>BS>KG>SG >TD>BG>PB.
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Affiliation(s)
- Kamal M Uddin
- Department of Crop Science, Institute of Tropical Agriculture, University Putra Malaysia, 43400 Serdang, Selangor, Malaysia.
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Ismail MR, Phizackerl S. Effects of Partial Rootzone and Controlled Deficit Irrigation on Growth, Yield and Peroxidase Activities of Tomatoes (Lycopersicon esculentum Mill.). ACTA ACUST UNITED AC 2008. [DOI: 10.3923/ijar.2009.46.52] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Ujang Z, Ng KS, Tg Hamzah TH, Roger P, Ismail MR, Shahabudin SM, Abdul Hamid MH. Application of immersed MF (IMF) followed by reverse osmosis (RO) membrane for wastewater reclamation: A case study in Malaysia. Water Sci Technol 2007; 56:103-108. [PMID: 18025737 DOI: 10.2166/wst.2007.700] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
A pilot scale membrane plant was constructed and monitored in Shah Alam, Malaysia for municipal wastewater reclamation for industrial application purposes. The aim of this study was to verify its suitability under the local conditions and environmental constraints for secondary wastewater reclamation. Immersed-type crossflow microfiltration (IMF) was selected as the pretreatment step before reverse osmosis filtration. Secondary wastewater after chlorine contact tank was selected as feed water. The results indicated that the membrane system is capable of producing a filtrate meeting the requirements of both WHO drinking water standards and Malaysian Effluent Standard A. With the application of an automatic backwash process, IMF performed well in hydraulic performance with low fouling rate being achieved. The investigations showed also that chemical cleaning is still needed because of some irreversible fouling by microorganisms always remains. RO treatment with IMF pretreatment process was significantly applicable for wastewater reuse purposes and promised good hydraulic performance.
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Affiliation(s)
- Z Ujang
- Institute of Environmental and Water Resource Management, Faculty of Civil Engineering, Universiti Teknologi Malaysia, Johor, Malaysia.
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Ordi J, Menendez C, Ismail MR, Ventura PJ, Palacín A, Kahigwa E, Ferrer B, Cardesa A, Alonso PL. Placental malaria is associated with cell-mediated inflammatory responses with selective absence of natural killer cells. J Infect Dis 2001; 183:1100-7. [PMID: 11237836 DOI: 10.1086/319295] [Citation(s) in RCA: 63] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2000] [Revised: 12/28/2000] [Indexed: 11/03/2022] Open
Abstract
Immunosuppression, particularly of cell-mediated responses, has classically been thought to play a major role in the increased susceptibility to malaria observed in pregnant women. An immunohistochemical characterization of the inflammatory infiltrate in a group of 41 placentas from women living in a Plasmodium falciparum-hyperendemic area in Tanzania revealed a marked increase in the number of monocytes and macrophages and cytotoxic T cells in the intervillous space of placentas with active malaria infection, compared with noninfected placentas, placentas from women with past infection, and a control group of placentas from Spain. This increase was associated with the severity of the infection. High numbers of monocytes and macrophages were associated with low birth weight. We also detected a complete absence of NK cells in the intervillous space in all placentas. This apparently physiological absence of NK cells may contribute to hindering the clearance of the parasite. These results indicate that placental malaria does not appear to be associated with cell-mediated immunosuppression. The role of the absence of NK cells in increased susceptibility to malaria needs to be further elucidated.
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Affiliation(s)
- J Ordi
- Department of Pathology, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS)/Hospital Clínic, Facultat de Medicina, Universitat de Barcelona, 08036 Barcelona, Spain.
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Menendez C, Ordi J, Ismail MR, Ventura PJ, Aponte JJ, Kahigwa E, Font F, Alonso PL. The impact of placental malaria on gestational age and birth weight. J Infect Dis 2000; 181:1740-5. [PMID: 10823776 DOI: 10.1086/315449] [Citation(s) in RCA: 301] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/1999] [Revised: 01/21/2000] [Indexed: 11/03/2022] Open
Abstract
Maternal malaria is associated with reduced birth weight, which is thought to be effected through placental insufficiency, which leads to intrauterine growth retardation (IUGR). The impact of malaria on preterm delivery is unclear. The effects of placental malaria-related changes on birth weight and gestational age were studied in 1177 mothers (and their newborns) from Tanzania. Evidence of malaria infection was found in 75.5% of placental samples. Only massive mononuclear intervillous inflammatory infiltration (MMI) was associated with increased risk of low birth weight (odds ratio ¿OR, 4.0). Maternal parasitized red blood cells and perivillous fibrin deposition both were associated independently with increased risk of premature delivery (OR, 3.2; OR, 2.1, respectively). MMI is an important mechanism in the pathogenesis of IUGR in malaria-infected placentas. This study also shows that placental malaria causes prematurity even in high-transmission areas. The impact of maternal malaria on infant mortality may be greater than was thought previously.
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Affiliation(s)
- C Menendez
- Unidad de Epidemiologia y Bioestadistica, Hospital Clinic, E-08036, Barcelona, Spain.
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Ismail MR, Ordi J, Menendez C, Ventura PJ, Aponte JJ, Kahigwa E, Hirt R, Cardesa A, Alonso PL. Placental pathology in malaria: a histological, immunohistochemical, and quantitative study. Hum Pathol 2000; 31:85-93. [PMID: 10665918 DOI: 10.1016/s0046-8177(00)80203-8] [Citation(s) in RCA: 197] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
To characterize the histological changes in malarial placentas and their relationship with parity and maternal and cord parasitemias, we conducted a histological study on 1,179 placentas from Ifakara, Tanzania, an area with intense and perennial malaria transmission. Immunohistochemical and quantitative studies for CD45, fibrin, and villous area were performed in 60 cases. Four hundred fifteen placentas (35.2%) showed parasites (active infections); in 303 of them, parasites co-existed with pigment covered by fibrin (chronic infections), and in 112 only parasites were detected (acute infections). Four hundred seventy-five cases (40.3%) showed hemozoin deposition without parasites (past infections). Of women with parasitized placentas, 46.3% did not show parasites in the peripheral blood. Basal membrane thickening (P = .002), fibrinoid necrosis (P = .004), and prominence of syncytial knots (P = .031) were associated with active malarial infection. No quantitative differences for perivillous fibrin deposition or villous area were found. The most significant association with active malarial infection was intervillous infiltration by mononuclear inflammatory cells (P < .001). Chronic infections were associated with the most severe changes, particularly intervillous mononuclear inflammation (OR, 28.7; 95% CI = 16.0 to 51.5, P< .001). Past infections showed only minimal differences with noninfected placentas. Primiparas showed chronic infections more frequently than multiparas (52% v 15%, P < .001). They also showed significantly higher placental parasitemias and intervillous inflammatory infiltrate. In conclusion, placental histology is more sensitive than peripheral blood examination in detecting malarial infection during pregnancy. Most malarial infections recover during pregnancy, leaving few residual changes in the placenta. Intervillous inflammation is the most frequent finding associated with malaria and is especially severe in primiparas, suggesting that mechanisms other than immunosuppression are responsible for the high susceptibility in this group.
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Affiliation(s)
- M R Ismail
- Instituto Nacional de Salud, Universidade Eduardo Mondlane, Maputo, Moçambique
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Ordi J, Ismail MR, Ventura PJ, Kahigwa E, Hirt R, Cardesa A, Alonso PL, Menendez C. Massive chronic intervillositis of the placenta associated with malaria infection. Am J Surg Pathol 1998; 22:1006-11. [PMID: 9706981 DOI: 10.1097/00000478-199808000-00011] [Citation(s) in RCA: 179] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
Massive chronic intervillositis (MCI) is an infrequently recognized placental lesion thought to be of immunologic origin that has been associated with poor fetal outcome. It is characterized by a prominent inflammatory infiltrate in the intervillous space, composed mainly of monocytes and macrophages that can simulate a maternal malignant disorder involving the placenta. The villi are characteristically spared. We report 74 cases of placental malarial infection with morphologic features of MCI. In all cases, the massive inflammatory infiltrate was limited to the intervillous space, which appeared largely obliterated. Increased fibrin deposition and prominent syncytial knots were frequent associated findings. Inflammatory cells were CD45 and CD68 positive, consistent with a monocyte-macrophage population. Some polymorphonuclear leukocytes and scattered T and B lymphocytes were also present. Villi were not inflamed. Malarial pigment was present in all cases, and parasitized maternal erythrocytes were evident in 73 of 74 patients. The histologic pattern of MCI was observed in 17.6% of placentas with malarial parasites. Malarial MCI affected predominantly primigravida women (77%) and was associated with a reduced birth weight, which in 39 (53%) of the infants was less than 2500 g, and a low gestational age. None of the infants with placentas with MCI died in the early neonatal period. Morphologic changes of MCI are seen in a significant percentage of placentas with malarial infection, especially in primigravida women, and are associated with a low birth weight. Malarial infection should therefore be considered in the differential diagnosis of massive intervillous infiltrates.
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Affiliation(s)
- J Ordi
- Department of Pathology, IDIBAPS Hospital Clínic, Facultat de Medicina, Universitat de Barcelona, Spain
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