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Uddin MN, Ferdous T, Jin Y, Rahman MM, Jahan MS. Chemometric Model for Rapid Determination of Syringyl/Guaiacyl Ratio in Non-Wood by FT-NIR Spectroscopic Data. ANALYTICAL SCIENCE ADVANCES 2025; 6:e70005. [PMID: 40078379 PMCID: PMC11896878 DOI: 10.1002/ansa.70005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/07/2024] [Revised: 02/12/2025] [Accepted: 02/24/2025] [Indexed: 03/14/2025]
Abstract
The present study is to develop a cost-effective, non-destructive and rapid method for quantification of syringyl/guaiacyl (S/G) ratio content in non-wood lignin, which is based on FT-NIR spectroscopic data and chemometric modelling techniques. The S/G ratio in 22 non-wood lignins was determined by wet chemical method. Then the same samples were run with FT-NIR, and the spectroscopic data were pre-processed with Savitzky-Golay (S-G) on their 1st and 2nd derivatives. As chemometric models, principal component regression (PCR) and partial least square regression (PLSR) were assessed for quantification of S/G ratio in non-wood lignin with raw and pre-treated FT-NIR spectral data. Finally, for quantification of S/G ratio, PLSR showed the best predictive results (R 2 = 99.90%) with FT-NIR data after treating them with S-G filtered with its derivatives and leverage correction. This rapid and cost-effective method is being proposed for the determination of S/G ratio in non-wood lignin.
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Affiliation(s)
- M. Nashir Uddin
- BCSIR LaboratoriesBangladesh Council of Scientific and Industrial Research (BCSIR)DhakaBangladesh
| | - Taslima Ferdous
- Department of Applied Chemistry and Chemical EngineeringUniversity of DhakaDhakaBangladesh
| | - Yangcan Jin
- Jiangsu Co‐Innovation Center of Efficient Processing and Utilization of Forest ResourcesJiangsu Key Lab of Pulp and Paper Science and TechnologyNanjing Forestry UniversityNanjingChina
| | - M. Mostafizur Rahman
- BCSIR LaboratoriesBangladesh Council of Scientific and Industrial Research (BCSIR)DhakaBangladesh
| | - M. Sarwar Jahan
- BCSIR LaboratoriesBangladesh Council of Scientific and Industrial Research (BCSIR)DhakaBangladesh
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Perri P, Curcio F, De Luca M, Piro P, Trombino S, Cassano R. Evaluation of Chitosan-Based Axiostat as Hemostatic Dressing for Endovascular Procedures in Patients with Leriche Syndrome on Anticoagulant Therapy. Pharmaceuticals (Basel) 2025; 18:584. [PMID: 40284019 PMCID: PMC12030152 DOI: 10.3390/ph18040584] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2025] [Revised: 03/21/2025] [Accepted: 04/02/2025] [Indexed: 04/29/2025] Open
Abstract
Background/Objectives: The safe completion of a non-invasive procedure is crucial to the success of an endovascular approach. Chitosan, a natural polysaccharide derived from chitin, is an ideal material for the study and application of medical devices in post-operative wound management. Methods: The present work is based on a retrospective study conducted on a sample of patients treated with Axiostat (a sterile, single-use, non-absorbable dressing), composed of 100% chitosan and designed to instantly stop bleeding through a mucus adhesion mechanism for the treatment of conditions such as Leriche's syndrome. The objective was to evaluate the efficacy and safety of the hemostatic Axiostat dressing in patients undergoing anticoagulant and/or antiplatelet therapy in whom endovascular procedures using the axillary artery as an access site are performed to treat Leriche syndrome. Results: The obtained results showed that Axiostat is safe and effective in promoting hemostasis at the axillary vascular access site even when prolonged hemostasis was required in patients on antiplatelet and anticoagulant therapy. The mean time to hemostasis was 5.75 min in all types of patients considered.
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Affiliation(s)
- Paolo Perri
- Department of Vascular and Endovascular Surgery, Annunziata Hospital, 1 Via Migliori, 87100 Cosenza, Italy; (P.P.); (P.P.)
| | - Federica Curcio
- Department of Pharmacy, Health and Nutritional Science, University of Calabria, Arcavacata, 87036 Rende, Italy; (F.C.); (M.D.L.)
| | - Michele De Luca
- Department of Pharmacy, Health and Nutritional Science, University of Calabria, Arcavacata, 87036 Rende, Italy; (F.C.); (M.D.L.)
| | - Paolo Piro
- Department of Vascular and Endovascular Surgery, Annunziata Hospital, 1 Via Migliori, 87100 Cosenza, Italy; (P.P.); (P.P.)
| | - Sonia Trombino
- Department of Pharmacy, Health and Nutritional Science, University of Calabria, Arcavacata, 87036 Rende, Italy; (F.C.); (M.D.L.)
| | - Roberta Cassano
- Department of Pharmacy, Health and Nutritional Science, University of Calabria, Arcavacata, 87036 Rende, Italy; (F.C.); (M.D.L.)
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Ashour ES, El-Sayed GM, Hegazy MA, Ghoniem NS. Chemometric-assisted UV spectrophotometric methods for determination of miconazole nitrate and lidocaine hydrochloride along with potential impurity and dosage from preservatives. BMC Chem 2025; 19:82. [PMID: 40156035 PMCID: PMC11954262 DOI: 10.1186/s13065-025-01447-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2024] [Accepted: 03/05/2025] [Indexed: 04/01/2025] Open
Abstract
Three accurate, simple, and precise chemometric techniques, principal component regression (PCR), partial least squares (PLS), and backward interval partial least squares (biPLS) were used to resolve the severely overlapped UV spectra of miconazole nitrate (MIC) and Lidocaine hydrochloride (LDC) along with the toxic impurity of LDC; dimethyl aniline (DMA) and the two inactive ingredients; methyl paraben (MTP) and saccharin sodium (SAC). The concentration ranges of the developed models were found to be (2.40-12.00 µg/mL) for LDC and MIC, (1.50-7.50 µg/mL) for DMA and MTP, and (2.00-6.00 µg/mL) for SAC. The proposed methods were found to be green, rapid, and were effectively used to analyze the studied compounds in both laboratory-prepared mixtures and antifungal oral gel, where no impurity was detected. The obtained results revealed that PLS algorithm was superior to PCR depending on the lowest root mean square error of prediction (RMSEP) and correlation coefficient values (r). The biPLS model, constructed with [3, 4, 5, 6, 8, and 9] subintervals, is considered the most efficient model with the lowest number of latent variables. biPLS is ideal for data analysis and enhancing model performance and robustness by focusing on the most relevant spectral regions. When compared to a reported HPLC method, the proposed methods showed non-significant difference regarding accuracy and precision. The developed models often yield faster results than HPLC. Once the model is built, it takes no time to predict multiple samples without requiring reconstruction, in addition, the proposed models minimize the costs of solvents and equipment compared to HPLC, making them a valuable option for quality control laboratories.
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Affiliation(s)
- Esraa S Ashour
- Analytical Chemistry Department, Faculty of Pharmacy, Cairo University, Kasr-El-Aini, Cairo, 11562, Egypt.
| | - Ghada M El-Sayed
- Analytical Chemistry Department, Faculty of Pharmacy, Cairo University, Kasr-El-Aini, Cairo, 11562, Egypt
| | - Maha A Hegazy
- Analytical Chemistry Department, Faculty of Pharmacy, Cairo University, Kasr-El-Aini, Cairo, 11562, Egypt
| | - Nermine S Ghoniem
- Analytical Chemistry Department, Faculty of Pharmacy, Cairo University, Kasr-El-Aini, Cairo, 11562, Egypt
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Giana HE, Souza LO, Silveira L. Comparison of different Raman spectrometer models in the quantification of blood serum analytes. Lasers Med Sci 2025; 40:143. [PMID: 40095085 DOI: 10.1007/s10103-025-04413-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2024] [Accepted: 03/12/2025] [Indexed: 03/19/2025]
Abstract
The analytical performance of three commercial Raman spectrometers in determining the concentrations of analytes associated with diagnosing metabolic, cardiovascular, and renal disorders has been compared. Two portable and one benchtop spectrometers were tested to predict the serum concentrations of triglycerides (TRI), cholesterol (COL), high-density cholesterol, creatinine, urea, and glucose in 193 serum samples using partial least squares (PLS) regression and PLS discriminant analysis, the latter for classifying samples as either altered or within reference values. Strong correlations (r > 0.81) were obtained for TRI and COL analytes using the benchtop and one of the portable spectrometers, and the classification accuracy rates exceeded 90%, suggesting potential for use in clinical screening. Adding a glucose solution improved the correlation and the root mean square error for TRI and COL analytes; however, it did not enhance the correlation or error for the glucose analyte. Raman spectroscopy showed potential to support routine laboratory activities and may have applications in clinical screening.
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Affiliation(s)
| | | | - Landulfo Silveira
- Universidade Anhembi Morumbi, São José dos Campos, Brazil.
- Centro de Inovação, Tecnologia e Educação - CITÉ, São José dos Campos, Brazil.
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Wang S, Bai R, Long W, Wan X, Zhao Z, Fu H, Yang J. Rapid qualitative and quantitative detection for adulteration of Atractylodis Rhizoma using hyperspectral imaging combined with chemometric methods. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2025; 327:125426. [PMID: 39541642 DOI: 10.1016/j.saa.2024.125426] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Revised: 11/01/2024] [Accepted: 11/08/2024] [Indexed: 11/16/2024]
Abstract
In the field of traditional Chinese medicine, Atractylodis Rhizoma (AR) is commonly used for various diseases due to its excellent ability to dry dampness and strengthen the spleen, especially popular in East Asia. The aim of this study is to proposed Hyperspectral Imaging (HSI) in combination with chemometric methods for the rapid qualitative and quantitative detection of AR adulteration with other types of powder. Partial Least Squares Discriminant Analysis (PLS-DA) was used to construct the classification models the best, with the First-order Derivative (F-D) preprocessing method. The accuracy values of the test sets for classification models were above 99%. Furthermore, Partial Least Squares Regression (PLSR), Random Forest Regression (RFR), and BP Neural Network (BPNN) were used to quantitatively analyze the adulteration level. On the whole, the BPNN model has a relatively stable effect. The R-square (R2) values of different models were all greater than 0.97, the Root Mean Square Error (RMSE) values were all less than 0.0300, and the Relative Percentage Difference (RPD) values were over 6.00. After applying three characteristic wavelength selection algorithms, namely Iterative Retained Information Variable (IRIV), Successive Projections Algorithm (SPA), and Variable Iterative Space Shrinkage Approach (VISSA) algorithms, the classification accuracy values remained over 99.00% while the quantification models' RPD values were over 4.00. These results demonstrate the reliability of using hyperspectral imaging combined with chemometrics methods for the adulteration problems in AR.
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Affiliation(s)
- Siman Wang
- State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijng 100700, PR China
| | - Ruibin Bai
- State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijng 100700, PR China; Research Center for Quality Evaluation of Dao-di Herbs, Ganjiang New District, 330000, China
| | - Wanjun Long
- The Modernization Engineering Technology Research Center of Ethnic Minority Medicine of Hubei Province, School of Pharmaceutical Sciences, South-Central University for Nationalities, Wuhan 430074, China
| | - Xiufu Wan
- State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijng 100700, PR China
| | - Zihan Zhao
- State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijng 100700, PR China; Research Center for Quality Evaluation of Dao-di Herbs, Ganjiang New District, 330000, China
| | - Haiyan Fu
- The Modernization Engineering Technology Research Center of Ethnic Minority Medicine of Hubei Province, School of Pharmaceutical Sciences, South-Central University for Nationalities, Wuhan 430074, China.
| | - Jian Yang
- State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijng 100700, PR China; Research Center for Quality Evaluation of Dao-di Herbs, Ganjiang New District, 330000, China.
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Li G, Li J, Liu H, Wang Y. Geographic traceability of Gastrodia elata Blum based on combination of NIRS and Chemometrics. Food Chem 2025; 464:141529. [PMID: 39395338 DOI: 10.1016/j.foodchem.2024.141529] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2024] [Revised: 09/23/2024] [Accepted: 10/02/2024] [Indexed: 10/14/2024]
Abstract
The content of the active ingredient in G. elata Bl. is affected by the soil and climate of different regions, so geographical traceability is essential to ensure its quality, commercial value. This study used a combination of NIRS and various chemometric methods to establish an effective geotraceability method for G. elata Bl.. Firstly, a traditional machine learning model was built based on the SF dataset NIRS, and a ResNet model was built based on NIRS generated 2DCOS images and 3DCOS images. Secondly, the model performance was validated using the ZT dataset. The results show that the 3DCOS-ResNet model performs the best with 100.00 % and 95.45 % test set and EV accuracy, respectively. This study provides a theoretical basis for regulators to quickly ensure the authenticity of G. elata Bl. sources. However, more data and in-depth studies are needed in the future to validate and improve the applicability of the model.
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Affiliation(s)
- Guangyao Li
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China; Medicinal Plants Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650200, China
| | - Jieqing Li
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China
| | - Honggao Liu
- Yunnan Key Laboratory of Gastrodia and Fungi Symbiotic Biology, Zhaotong University, Zhaotong 657000, Yunnan, China.
| | - Yuanzhong Wang
- Medicinal Plants Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650200, China.
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Beg S, Ahirwar K, Almalki WH, Almujri SS, Alhamyani A, Rahman M, Shukla R. Nondestructive techniques for pharmaceutical drug product characterization. Drug Discov Today 2025; 30:104249. [PMID: 39580022 DOI: 10.1016/j.drudis.2024.104249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2024] [Revised: 09/22/2024] [Accepted: 11/14/2024] [Indexed: 11/25/2024]
Abstract
Pharmaceutical product development involves multiple steps; therefore product quality must be assessed to ensure robustness and acceptability. Raw components, production methods, and ambient conditions yield highly variable end products with low batch-to-batch consistency. Although end testing is performed to ensure product quality, intermediate quality checks are limited. Nondestructive techniques like terahertz, near-infrared, X-ray, and Raman spectroscopy are common tools for in-line quality checks and real-time data monitoring. Handheld devices based on these analytical techniques also help in identifying counterfeit drugs products. This review discusses modern regulatory perspectives on the use of nondestructive tools in pharmaceutical quality monitoring.
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Affiliation(s)
- Sarwar Beg
- Department of Pharmaceutics, School of Pharmaceutical Education and Research, Jamia Hamdard, New Delhi 110062, India.
| | - Kailash Ahirwar
- Department of Pharmaceutics, National Institute of Pharmaceutical Education and Research (NIPER), Raebareli, Lucknow 226002, India
| | - Waleed H Almalki
- Department of Pharmacology and Toxicology, College of Pharmacy, Umm Al-Qura University, Makkah, Saudi Arabia
| | - Salem S Almujri
- Department of Pharmacology, College of Pharmacy, King Khalid University, Asir-Abha 61421, Saudi Arabia
| | - Abdulrahman Alhamyani
- Pharmaceuticals Chemistry Department, Faculty of Clinical Pharmacy, Al Baha University, Al Baha 65779, Saudi Arabia
| | - Mahfoozur Rahman
- Department of Pharmaceutical Sciences, Shalom Institute of Health & Allied Sciences, Sam Higginbottom University of Agriculture, Technology & Sciences, Allahabad, India
| | - Rahul Shukla
- Department of Pharmaceutics, National Institute of Pharmaceutical Education and Research (NIPER), Raebareli, Lucknow 226002, India.
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Fan Y, Liao J, Zhou Q, Liu Y, Che L, Tang J. Rapid prediction of the chemical composition of pet food using a benchtop and handheld near-infrared spectrometer. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 323:124916. [PMID: 39096679 DOI: 10.1016/j.saa.2024.124916] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Revised: 07/29/2024] [Accepted: 07/29/2024] [Indexed: 08/05/2024]
Abstract
Quality of pet foods can be affected by many factors such as raw materials, formulations, and processing techniques. The pet food manufacturers require fast analyses to control the nutritional quality of their products. Herein, near-infrared spectroscopy (NIR) was evaluated to quantify the chemical composition of pet food, and the performances of two NIR spectrometers were investigated and compared: a benchtop instrument (1000-2500 nm) and a low-cost handheld instrument (900-1700 nm). Seventy cat food and thirty-six dog samples were characterized using reference methods for crude protein, crude fat, crude fibre, crude ash, moisture, calcium (Ca), and phosphorus (P). Principal component regression (PCR) and partial least squares regression (PLSR) were used to establish the models that involved the cat food and mixed model. The characteristic wavelengths were selected using a competitive adaptive reweighted-sampling (CARS) algorithm. The Optimal models obtained from the benchtop instrument for crude protein, crude fat, and moisture were classified as "Good" or "Very good" (Residual prediction variation (RPD) > 3), for crude fibre were classified as "Poor" (RPD>2), and for crude ash, Ca and P (RPD<2) were classified as "Very poor". The Optimal calibrations obtained from the handheld instrument for crude protein, crude fat, and moisture were classified as "Good" or "Very good" (RPD>3), for crude fibre, crude ash, Ca, and P were classified as "Very poor" (RPD<2). Generally, the the performance of benchtop and handheld instrument was close, and the cat food model outperformed the mixed model. Results from the current study revealed the potential to monitor the chemical compositions in pet food on a large scale.
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Affiliation(s)
- Yang Fan
- College of Life Science, Sichuan Agricultural University, Yaan 625014, China.
| | - Jinqiu Liao
- College of Life Science, Sichuan Agricultural University, Yaan 625014, China.
| | - Qiang Zhou
- Animal Nutrition Institute, Sichuan Agricultural University, Chengdu 611130, China.
| | - Yang Liu
- Animal Nutrition Institute, Sichuan Agricultural University, Chengdu 611130, China.
| | - Lianqiang Che
- Animal Nutrition Institute, Sichuan Agricultural University, Chengdu 611130, China.
| | - Jiayong Tang
- Animal Nutrition Institute, Sichuan Agricultural University, Chengdu 611130, China.
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Qiu J, Li J, Shang SY, Zhou P, Leng J. HPLC Fingerprint Combined With Chemometrics and Multicomponent Content Determination for Quality Evaluation and Control of Huangma Tincture. PHYTOCHEMICAL ANALYSIS : PCA 2024. [PMID: 39658907 DOI: 10.1002/pca.3487] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2024] [Revised: 09/10/2024] [Accepted: 11/22/2024] [Indexed: 12/12/2024]
Abstract
INTRODUCTION Huangma Tincture (HMT) is a Chinese patent medicine with a history of clinical use for more than 60 years, widely used for treating dermal chronic ulcer such as diabetic foot ulcer. However, the overall quality evaluation and control method of HMT has not yet been researched. OBJECTIVE The aim of this study is to establish a comprehensive quality evaluation and control method for HMT based on high-performance liquid chromatography (HPLC) fingerprint, chemometrics, and multicomponent content determination. METHODS Establishing chemical fingerprint of HMT and carrying out similarity analysis comprehensively reflect the consistency of the formulation in terms of chemical composition. Chemometrics analyses, including hierarchical cluster analysis (HCA), principal component analysis (PCA), and orthogonal partial least squares-discriminant analysis (OPLS-DA), were performed to identify components crucial to quality differences. The content of five potential bioactive ingredients (brucine, strychnine, jatrorrhizine, coptisine, and berberine hydrochloride) was determined as a supplementary quality control measure. RESULTS HPLC fingerprint of HMT with similarity index > 0.990 was established, in which five common compounds (brucine, strychnine, jatrorrhizine, coptisine, and berberine hydrochloride) were identified. HCA, PCA, and OPLS-DA results, validated through 200 permutation tests, were basically consistent. The contents of brucine, strychnine, jatrorrhizine, coptisine, and berberine hydrochloride in 20 batches of HMT samples were 0.2088-0.5556, 0.2599-0.9868, 0.1358-0.2092, 0.2634-0.6843, and 1.8301-2.7826 mg/mL, respectively. CONCLUSION HPLC fingerprint combined with chemometrics and multicomponent content determination considering both effect and toxicity provides a robust method for the comprehensive quality evaluation and control of HMT.
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Affiliation(s)
- Jing Qiu
- Preparation Center, Chongqing Hospital of Traditional Chinese Medicine, Chongqing, China
| | - Jie Li
- Preparation Center, Chongqing Hospital of Traditional Chinese Medicine, Chongqing, China
| | - Si-Yang Shang
- Preparation Center, Chongqing Hospital of Traditional Chinese Medicine, Chongqing, China
| | - Peng Zhou
- Preparation Center, Chongqing Hospital of Traditional Chinese Medicine, Chongqing, China
| | - Jing Leng
- Preparation Center, Chongqing Hospital of Traditional Chinese Medicine, Chongqing, China
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Vaillant A, Beurier G, Cornet D, Rouan L, Vile D, Violle C, Vasseur F. NIRSpredict: a platform for predicting plant traits from near infra-red spectroscopy. BMC PLANT BIOLOGY 2024; 24:1100. [PMID: 39563275 DOI: 10.1186/s12870-024-05776-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Accepted: 11/01/2024] [Indexed: 11/21/2024]
Abstract
Near-infrared spectroscopy (NIRS) has become a popular tool for investigating phenotypic variability in plants. We developed the Shiny NIRSpredict application to get predictions of 81 Arabidopsis thaliana phenotypic traits, including classical functional traits as well as a large variety of commonly measured chemical compounds, based from near-infrared spectroscopy values based on deep learning. It is freely accessible at the following URL: https://shiny.cefe.cnrs.fr/NirsPredict/ . NIRSpredict has three main functionalities. First, it allows users to submit their spectrum values to get the predictions of plant traits from models built with the hosted A. thaliana database. Second, users have access to the database of traits used for model calibration. Data can be filtered and extracted on user's choice and visualized in a global context. Third, a user can submit his own dataset to extend the database and get part of the application development. NIRSpredict provides an easy-to-use and efficient method for trait prediction and an access to a large dataset of A. thaliana trait values. In addition to covering many of functional traits it also allows to predict a large variety of commonly measured chemical compounds. As a reliable way of characterizing plant populations across geographical ranges, NIRSpredict can facilitate the adoption of phenomics in functional and evolutionary ecology.
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Affiliation(s)
- Axel Vaillant
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | - Grégory Beurier
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, F-34398, France
| | - Denis Cornet
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, F-34398, France
| | - Lauriane Rouan
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, F-34398, France
| | - Denis Vile
- LEPSE, Univ Montpellier, INRAE, Institut Agro, Montpellier, France
| | - Cyrille Violle
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
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Tangorra FM, Lopez A, Ighina E, Bellagamba F, Moretti VM. Handheld NIR Spectroscopy Combined with a Hybrid LDA-SVM Model for Fast Classification of Retail Milk. Foods 2024; 13:3577. [PMID: 39593993 PMCID: PMC11594020 DOI: 10.3390/foods13223577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2024] [Revised: 11/06/2024] [Accepted: 11/08/2024] [Indexed: 11/28/2024] Open
Abstract
The EU market offers different types of milk, distinguished by origin, production method, processing technology, fat content, and other characteristics, which are often detailed on product labels. In this context, ensuring the authenticity of milk is crucial for maintaining standards and preventing fraud. Various food authenticity techniques have been employed to achieve this. Among them, near-infrared (NIR) spectroscopy is valued for its non-destructive and rapid analysis capabilities. This study evaluates the effectiveness of a miniaturized NIR device combined with support vector machine (SVM) algorithms and LDA feature selection to discriminate between four commercial milk types: high-quality fresh milk, milk labeled as mountain product, extended shelf-life milk, and TSG hay milk. The results indicate that NIR spectroscopy can effectively classify milk based on the type of milk, relying on different production systems and heat treatments (pasteurization). This capability was greater in distinguishing high-quality mountain and hay milk from the other types, while resulting in less successful class assignment for extended shelf-life milk. This study demonstrated the potential of portable NIR spectroscopy for real-time and cost-effective milk authentication at the retail level.
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Affiliation(s)
| | - Annalaura Lopez
- Department of Veterinary Medicine and Animal Sciences (DIVAS), Università degli Studi di Milano, Via dell’Università 6, 26900 Lodi, Italy; (F.M.T.); (E.I.); (F.B.); (V.M.M.)
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Buoio E, Colombo V, Ighina E, Tangorra F. Rapid Classification of Milk Using a Cost-Effective Near Infrared Spectroscopy Device and Variable Cluster-Support Vector Machine (VC-SVM) Hybrid Models. Foods 2024; 13:3279. [PMID: 39456341 PMCID: PMC11507366 DOI: 10.3390/foods13203279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2024] [Revised: 10/09/2024] [Accepted: 10/13/2024] [Indexed: 10/28/2024] Open
Abstract
Removing fat from whole milk and adding water to milk to increase its volume are among the most common food fraud practices that alter the characteristics of milk. Usually, deviations from the expected fat content can indicate adulteration. Infrared spectroscopy is a commonly used technique for distinguishing pure milk from adulterated milk, even when it comes from different animal species. More recently, portable spectrometers have enabled in situ analysis with analytical performance comparable to that of benchtop instruments. Partial Least Square (PLS) analysis is the most popular tool for developing calibration models, although the increasing availability of portable near infrared spectroscopy (NIRS) has led to the use of alternative supervised techniques, including support vector machine (SVM). The aim of this study was to develop and implement a method based on the combination of a compact and low-cost Fourier Transform near infrared (FT-NIR) spectrometer and variable cluster-support vector machine (VC-SVM) hybrid model for the rapid classification of milk in accordance with EU Regulation EC No. 1308/2013 without any pre-treatment. The results obtained from the external validation of the VC-SVM hybrid model showed a perfect classification capacity (100% sensitivity, 100% specificity, MCC = 1) for the radial basis function (RBF) kernel when used to classify whole vs. not-whole and skimmed vs. not-skimmed milk samples. A strong classification capacity (94.4% sensitivity, 100% specificity, MCC = 0.95) was also achieved in discriminating semi-skimmed vs. not-semi-skimmed milk samples. This approach provides the dairy industry with a practical, simple and efficient solution to quickly identify skimmed, semi-skimmed and whole milk and detect potential fraud.
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Affiliation(s)
- Eleonora Buoio
- Department of Veterinary Medicine and Animal Science, University of Milan, Via dell’Università 6, 26900 Lodi, Italy; (E.B.); (E.I.)
| | | | - Elena Ighina
- Department of Veterinary Medicine and Animal Science, University of Milan, Via dell’Università 6, 26900 Lodi, Italy; (E.B.); (E.I.)
| | - Francesco Tangorra
- Department of Veterinary Medicine and Animal Science, University of Milan, Via dell’Università 6, 26900 Lodi, Italy; (E.B.); (E.I.)
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13
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Tillman Z, Gray K, Wolfrum E. Rapid measurement of soluble xylo-oligomers using near-infrared spectroscopy (NIRS) and multivariate statistics: calibration model development and practical approaches to model optimization. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2024; 17:112. [PMID: 39143602 PMCID: PMC11323376 DOI: 10.1186/s13068-024-02558-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Accepted: 07/26/2024] [Indexed: 08/16/2024]
Abstract
BACKGROUND Rapid monitoring of biomass conversion processes using techniques such as near-infrared (NIR) spectroscopy can be substantially quicker and less labor-, resource-, and energy-intensive than conventional measurement techniques such as gas or liquid chromatography (GC or LC) due to the lack of solvents and preparation methods, as well as removing the need to transfer samples to an external lab for analytical evaluation. The purpose of this study was to determine the feasibility of rapid monitoring of a biomass conversion process using NIR spectroscopy combined with multivariate statistical modeling, and to examine the impact of (1) subsetting the samples in the original dataset by process location and (2) reducing the spectral range used in the calibration model on model performance. RESULTS We develop multivariate calibration models for the concentrations of soluble xylo-oligosaccharides (XOS), monomeric xylose, and total solids at multiple points in a biomass conversion process which produces and then purifies XOS compounds from sugar cane bagasse. A single model using samples from multiple locations in the process stream showed acceptable performance as measured by standard statistical measures. However, compared to the single model, we show that separate models built by segregating the calibration samples according to process location show improved performance. We also show that combining an understanding of the sample spectra with simple multivariate analysis tools can result in a calibration model with a substantially smaller spectral range that provides essentially equal performance to the full-range model. CONCLUSIONS We demonstrate that real-time monitoring of soluble xylo-oligosaccharides (XOS), monomeric xylose, and total solids concentration at multiple points in a process stream using NIR spectroscopy coupled with multivariate statistics is feasible. Segregation of sample populations by process location improves model performance. Models using a reduced spectral range containing the most relevant spectral signatures show very similar performance to the full-range model, reinforcing the importance of performing robust exploratory data analysis before beginning multivariate modeling.
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Affiliation(s)
| | - Kevin Gray
- National Renewable Energy Laboratory, Golden, USA
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14
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Ravera F, Efeoglu E, Byrne HJ. A comparative analysis of stem cell differentiation on 2D and 3D substrates using Raman microspectroscopy. Analyst 2024; 149:4041-4053. [PMID: 38973486 DOI: 10.1039/d4an00315b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/09/2024]
Abstract
Chondrogenesis is a complex cellular process that involves the transformation of mesenchymal stem cells (MSCs) into chondrocytes, the specialised cells that form cartilage. In recent years, three-dimensional (3D) culture systems have emerged as a promising approach to studying cell behaviour and development in a more physiologically relevant environment compared to traditional two-dimensional (2D) cell culture. The use of these systems provided insights into the molecular mechanisms that regulate chondrogenesis and has the potential to revolutionise the development of new therapies for cartilage repair and regeneration. This study demonstrates the successful application of Raman microspectroscopy (RMS) as a label-free, non-destructive, and sensitive method to monitor the chondrogenic differentiation of bone marrow-derived rat mesenchymal stem cells (rMSCs) in a collagen type I hydrogel, and explores the potential benefits of 3D hydrogels compared to conventional 2D cell culture environments. rMSCs were cultured on 3D substrates for 3 weeks and their differentiation was monitored by measuring the spectral signatures of their subcellular compartments. Additionally, the evolution of high-density micromass cultures was investigated to provide a comprehensive understanding of the process and complex interactions between cells and their surrounding extracellular matrix. For comparison, rMSCs were induced into chondrogenesis in identical medium conditions for 21 days in monolayer culture. Raman spectra showed that rMSCs cultured in a collagen type I hydrogel are able to undergo a distinct chondrogenic differentiation pathway at a significantly higher rate than the 2D culture cells. 3D cultures expressed stronger and more homogeneous chondrogenesis-associated peaks such as collagens, glycosaminoglycans (GAGs), and aggrecan while manifesting changes in proteins and lipidic content. These results suggest that 3D type I collagen hydrogel substrates are promising for in vitro chondrogenesis studies, and that RMS is a valuable tool for monitoring chondrogenesis in 3D environments.
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Affiliation(s)
- F Ravera
- FOCAS Research Institute, Technological University Dublin, City Campus, Dublin 8, Ireland.
| | - E Efeoglu
- NICB (National Institute for Cellular Biotechnology) at Dublin City University, Dublin 9, Ireland
| | - H J Byrne
- FOCAS Research Institute, Technological University Dublin, City Campus, Dublin 8, Ireland.
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15
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Massei A, Falco N, Fissore D. Use of Raman spectroscopy and PCA for quality evaluation and out-of-specification identification in biopharmaceutical products. Eur J Pharm Biopharm 2024; 200:114342. [PMID: 38795787 DOI: 10.1016/j.ejpb.2024.114342] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Revised: 05/13/2024] [Accepted: 05/22/2024] [Indexed: 05/28/2024]
Abstract
Over the past three decades, there was a remarkable growth in the approval of antibody-based biopharmaceutical products. These molecules are notably susceptible to the stresses occurring during drug manufacturing, often leading to structural alterations. A key concern is thus the ability to detect and comprehend these alterations caused by processes, such as aggregation, fragmentation, oxidation levels, as well as the change in protein concentration throughout the process steps, potentially resulting in out-of-spec products. In the present study, Raman spectroscopy, coupled with Principal Component Analysis (PCA), has proven to be an excellent tool for characterizing protein-based products. Notably, it offers the advantages of being minimally invasive, rapid and relatively insensitive to water. Therefore, it was successfully employed to discriminate between various stresses impacting a monoclonal antibody (mAb). The molecule used in this study is a fully human IgG1 fusion protein. Thermal stress was induced by incubating the samples at 50 °C for one month, while oxidative stress was induced by introducing hydrogen peroxide. Additionally, dilutions were performed to explore a broader range of protein concentrations. Specific key bands were identified in the Raman spectra, which facilitated the PCA classification and allowed for their association with distinct changes in the secondary and tertiary structures of the protein. Notably, it was observed that signals corresponding to amino acids exhibited a decrease in intensity with increasing levels of thermal stress, while other alterations were noted in the amide bands. It was shown that changes in the range 2800-3000 cm-1 pertains to the dilution process, while specific peaks of C-H stretching were essential for the discrimination between the oxidative-stressed samples and the thermal and diluted counterparts. Furthermore, the model calibrated on the mAb demonstrated remarkable performance when used to evaluate a different product, e.g. a hormone.
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Affiliation(s)
- Ambra Massei
- Dipartimento di Scienza Applicata e Tecnologia, Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Torino, Italy; Global Drug Product Development, Merck Serono SpA, Via Luigi Einaudi 11, 00012 Guidonia Montecelio (Roma), Italy
| | - Nunzia Falco
- Global Drug Product Development, Merck Serono SpA, Via Luigi Einaudi 11, 00012 Guidonia Montecelio (Roma), Italy
| | - Davide Fissore
- Dipartimento di Scienza Applicata e Tecnologia, Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Torino, Italy.
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16
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Kammoun AK, Hafez HM, Kamel EB, Fawzy MG. A comparative analysis of univariate versus multivariate eco-friendly spectrophotometric manipulations for resolving severely overlapped spectra of vonoprazan and amoxicillin new combination. Anal Biochem 2024; 689:115501. [PMID: 38453048 DOI: 10.1016/j.ab.2024.115501] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 03/03/2024] [Accepted: 03/04/2024] [Indexed: 03/09/2024]
Abstract
Vonoprazan and amoxicillin are pharmacological combinations that demonstrate synergistic effects in treating Helicobacter pylori (H. pylori), a global public health concern associated with peptic ulcer disease and gastric cancer. Four spectrophotometric methods were developed, including two univariate techniques (Fourier self-deconvolution and ratio difference) and two multivariate chemometric approaches (partial least squares and principal component regression). These methods provide innovative solutions for effectively resolving and accurately quantifying the overlapping spectra of vonoprazan and amoxicillin. The concentration ranges covered were 3-60 μg ml-1 for vonoprazan and 5-140 μg ml-1 for amoxicillin. To assess the environmental sustainability of the methodologies, various measures such as the Green Analytical Procedure Index (GAPI), National Environmental Method Index (NEMI), Analytical GREEnness Calculator, and Analytical Eco-scale, as well as RGB12 and hexagon toll were implemented. The validation of the developed techniques was carried out in compliance with ICH standards. The present study is highly significant because it is the first time that the mixture has been determined using the current approaches. The comparative analysis demonstrated no significant difference in terms of accuracy and precision compared to reference HPLC method (p = 0.05). The established spectrophotometric methods offer a straightforward, rapid, and cost-effective alternative to complex analytical techniques for determining the vonoprazan and amoxicillin mixture. They show potential for routine analysis in research laboratories and pharmaceutical industries.
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Affiliation(s)
- Ahmed K Kammoun
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, King Abdulaziz University, Jeddah, 21589, P.O. Box 80260, Saudi Arabia
| | - Hani M Hafez
- Pharmaceutical Chemistry Department, College of Pharmacy, Al-Esraa University, Baghdad, Iraq
| | - Ebraam B Kamel
- Pharmaceutical Chemistry Department, Faculty of Pharmacy, Egyptian Russian University, Badr City, Cairo, 11829, Egypt.
| | - Michael Gamal Fawzy
- Pharmaceutical Chemistry Department, Faculty of Pharmacy, Egyptian Russian University, Badr City, Cairo, 11829, Egypt
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17
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Chen T, Sun M, Li B, Wang Y, Zhang J, Xu C, Yu Y, Yuan L, Wu Y. Identifying hypothermia death in a mouse model by ATR-FTIR. Int J Legal Med 2024; 138:1179-1186. [PMID: 38191742 DOI: 10.1007/s00414-023-03156-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Accepted: 12/22/2023] [Indexed: 01/10/2024]
Abstract
The identification of hypothermia death (HD) is difficult for cadavers, especially the distinction from death due to alternative causes. A large number of studies have shown that brown adipose tissue (BAT) plays critical roles in thermoregulation of mammals. In this study, BAT of mice was used for the discrimination of HD using attenuated total reflection-Fourier transform infrared spectroscopy (ATR-FTIR). A modified mouse HD model conducted by Feeney DM was used in this study to obtain infrared spectra of BAT. Principal component analysis (PCA), partial least squares discriminant analysis (PLS-DA), and orthogonal partial least squares discriminant analysis (OPLS-DA) were used to establish discrimination models. The PLS-DA and OPLS-DA models exhibit prominent discriminative efficiency, and the accuracy of HD identification using fingerprint regions and ratios of absorption intensity is near 100% in both the calibration and validation sets. Our preliminary study suggests that BAT may be an extremely effective target tissue for identification of cadavers of HD, and ATR-FTIR spectra combined with chemometrics have also shown potential for cadaver identification in forensic practice in a fast and accurate manner.
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Affiliation(s)
- Tangdong Chen
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Shaanxi Provincial Key Laboratory of Clinic Genetics, The Air Force Medical University, Xi'an, 710032, China
| | - Mao Sun
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Shaanxi Provincial Key Laboratory of Clinic Genetics, The Air Force Medical University, Xi'an, 710032, China
| | - Bowen Li
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Shaanxi Provincial Key Laboratory of Clinic Genetics, The Air Force Medical University, Xi'an, 710032, China
| | - Yufeng Wang
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Shaanxi Provincial Key Laboratory of Clinic Genetics, The Air Force Medical University, Xi'an, 710032, China
| | - Juan Zhang
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Shaanxi Provincial Key Laboratory of Clinic Genetics, The Air Force Medical University, Xi'an, 710032, China
| | - Changwei Xu
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Shaanxi Provincial Key Laboratory of Clinic Genetics, The Air Force Medical University, Xi'an, 710032, China
| | - Yawen Yu
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Shaanxi Provincial Key Laboratory of Clinic Genetics, The Air Force Medical University, Xi'an, 710032, China
| | - Lijuan Yuan
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Shaanxi Provincial Key Laboratory of Clinic Genetics, The Air Force Medical University, Xi'an, 710032, China.
- Department of General Surgery, Tangdu Hospital, The Air Force Military Medical University, Xi'an, 710038, China.
| | - Yuanming Wu
- Department of Biochemistry and Molecular Biology, School of Basic Medicine, Shaanxi Provincial Key Laboratory of Clinic Genetics, The Air Force Medical University, Xi'an, 710032, China.
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18
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Nasereddin J, Al Wadi R, Zaid Al-Kilani A, Abu Khalil A, Al Natour M, Abu Dayyih W. The Use of Data Mining for Obtaining Deeper Insights into the Fabrication of Prednisolone-Loaded Chitosan Nanoparticles. AAPS PharmSciTech 2024; 25:38. [PMID: 38355842 DOI: 10.1208/s12249-024-02756-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Accepted: 01/25/2024] [Indexed: 02/16/2024] Open
Abstract
The present work explores a data mining approach to study the fabrication of prednisolone-loaded chitosan nanoparticles and their properties. Eight PLC formulations were prepared using an automated adaptation of the antisolvent precipitation method. The PLCs were characterized using dynamic light scattering, infrared spectroscopy, and drug release studies. Results showed that that the effective diameter, loading capacity, encapsulation efficiency, zeta potential, and polydispersity of the PLCs were influenced by the concentration and molecular weight of chitosan. The drug release studies showed that PLCs exhibited significant dissolution enhancement compared to pure prednisolone crystals. Principal components analysis and partial least squares regression were applied to the infrared spectra and the DLS data to extract higher-order interactions and correlations between the critical quality attributes and the diameter of the PLCs. Principal components revealed that the spectra clustered according to the type of material, with PLCs forming a separate cluster from the raw materials and the physical mix. PLS was successful in predicting the ED of the PLCs from the FTIR spectra with R2 = 0.98 and RMSE = 27.18. The present work demonstrates that data mining techniques can be useful tools for obtaining deeper insights into the fabrication and properties of PLCs, and for optimizing their quality and performance. It also suggests that FTIR spectroscopy can be a rapid and non-destructive method for predicting the ED of PLCs.
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Affiliation(s)
- Jehad Nasereddin
- Department of Pharmaceutical Sciences, Faculty of Pharmacy, Zarqa University, Zarqa, 13110, Jordan.
| | - Reem Al Wadi
- Department of Pharmaceutical Sciences, Faculty of Pharmacy, Zarqa University, Zarqa, 13110, Jordan
| | - Ahlam Zaid Al-Kilani
- Department of Pharmaceutical Sciences, Faculty of Pharmacy, Zarqa University, Zarqa, 13110, Jordan
| | - Asad Abu Khalil
- Department of Pharmaceutics and Pharmaceutical Technology, The Faculty of Pharmacy and Medical Sciences, University of Petra, Amman, 11196, Jordan
| | - Mohammad Al Natour
- Department of Pharmaceutics and Pharmaceutical Technology, The Faculty of Pharmacy and Medical Sciences, University of Petra, Amman, 11196, Jordan
| | - Wael Abu Dayyih
- Faculty of Pharmacy, Mutah University, Al Karak, 61710, Jordan
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19
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Abdel Halim AS, Abdel-Salam Z, Abdel-Harith M, Hamdy O. Investigating the effect of changing the substrate material analyzed by laser-induced breakdown spectroscopy on the antenna performance. Sci Rep 2024; 14:1964. [PMID: 38263437 PMCID: PMC10806075 DOI: 10.1038/s41598-024-52435-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2023] [Accepted: 01/18/2024] [Indexed: 01/25/2024] Open
Abstract
Miniaturized microstrip antennas are efficiently utilized in MICS band wearable and implantable medical applications. However, the properties of the materials employed for antenna fabrication influence its resultant parameters and play a vital role in its performance. Rogers have been widely used as a substrate material in various antenna designs. In this work, a proof of concept study has been conducted to determine how altering the substrate used in antenna construction affects antenna performance. Using the laser-induced breakdown spectroscopy (LIBS) approach, the elements present in the two distinct substrate raw materials were compared to investigate potential effects on the antenna's performance. Given their accessibility and widespread use, two types of Rogers' substrates, RO 3210 and RO 4003, were selected. Furthermore, two identical antenna designs were modeled and fabricated using the two substrate materials. The reflection coefficient (S11) and other antenna parameters were determined and compared. Moreover, the recorded LIBS spectra were evaluated using principle component analysis and partial least square regression techniques. The LIBS spectra showed different copper and iron contents between the two Rogers (i.e., other dielectric properties), leading to a frequency shift. Additionally, impurities in the fabricated material increase the possible losses. Consequently, the elemental contents of the utilized Rogers control the antenna's performance and can ensure its safety in wearable and implant applications.
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Affiliation(s)
- Ashraf S Abdel Halim
- Department of Communication, Faculty of Engineering, Canadian International College (CIC), Cairo, Egypt
| | - Zienab Abdel-Salam
- Laser Applications in Metrology, Photochemistry, and Agriculture Department, National Institute of Laser Enhanced Science, Cairo University, Giza, Egypt
| | - Mohamed Abdel-Harith
- Laser Applications in Metrology, Photochemistry, and Agriculture Department, National Institute of Laser Enhanced Science, Cairo University, Giza, Egypt
| | - Omnia Hamdy
- Department of Engineering Applications of Lasers, National Institute of Laser Enhanced Sciences, Cairo University, Giza, 12613, Egypt.
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20
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Herrera MD, Pérez-Ramírez IF, Reynoso-Camacho R, Reveles-Torres LR, Servín-Palestina M, Granados-López AJ, Reyes-Estrada CA, López JA. Chemometric Evaluation of RI-Induced Phytochemicals in Phaseolus vulgaris Seeds Indicate an Improvement on Liver Enzymes in Obese Rats. Molecules 2023; 28:7983. [PMID: 38138473 PMCID: PMC10746056 DOI: 10.3390/molecules28247983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Revised: 11/27/2023] [Accepted: 12/04/2023] [Indexed: 12/24/2023] Open
Abstract
Liver enzymes alterations (activity or quantity increase) have been recognized as biomarkers of obesity-related abnormal liver function. The intake of healthy foods can improve the activity of enzymes like aspartate and alanine aminotransferases (AST, ALT), γ-glutaminyl transferase (GGT), and alkaline phosphatase (ALP). Beans have a high concentration of several phytochemicals; however, Restriction Irrigation (RI) during plant development amends their synthesis. Using chemometric tools, we evaluated the capacity of RI-induced phytochemicals to ameliorate the high activity of liver enzymes in obese rats. The rats were induced with a high-fat diet for 4 months, subsequently fed with 20% cooked beans from well-watered plants (100/100), or from plants subjected to RI at the vegetative or reproduction stage (50/100, 100/50), or during the whole cycle (50/50) for 3 months. A partial least square discriminant analysis indicated that mostly flavonols have a significant association with serum AST and ALT activity, while isoflavones lowered GGT and ALP. For AST and ALT activity in the liver, saponins remained significant for hepatocellular protection and flavonoids remained significant as hepatobiliary protectants by lowering GGT and ALP. A principal component analysis demonstrated that several flavonoids differentiated 100/50 treatment from the rest, while some saponins were correlated to 50/100 and 50/50 treatments. The intake of beans cultivated under RI improves obesity-impaired liver alterations.
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Affiliation(s)
- Mayra Denise Herrera
- Campo Experimental Zacatecas (CEZAC-INIFAP), Carretera Zacatecas-Fresnillo Km 24.5, Calera de VR, Zacatecas 98500, Mexico; (M.D.H.); (L.R.R.-T.); (M.S.-P.)
- Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas “Francisco García Salinas”, Avenida Preparatoria No. 301, Colonia Hidráulica, Zacatecas 98068, Mexico;
| | - Iza Fernanda Pérez-Ramírez
- Research and Graduate Studies in Food Science, Faculty of Chemistry, Autonomous University of Queretaro, Queretaro 76010, Mexico; (I.F.P.-R.); (R.R.-C.)
| | - Rosalía Reynoso-Camacho
- Research and Graduate Studies in Food Science, Faculty of Chemistry, Autonomous University of Queretaro, Queretaro 76010, Mexico; (I.F.P.-R.); (R.R.-C.)
| | - Luis Roberto Reveles-Torres
- Campo Experimental Zacatecas (CEZAC-INIFAP), Carretera Zacatecas-Fresnillo Km 24.5, Calera de VR, Zacatecas 98500, Mexico; (M.D.H.); (L.R.R.-T.); (M.S.-P.)
- Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas “Francisco García Salinas”, Avenida Preparatoria No. 301, Colonia Hidráulica, Zacatecas 98068, Mexico;
| | - Miguel Servín-Palestina
- Campo Experimental Zacatecas (CEZAC-INIFAP), Carretera Zacatecas-Fresnillo Km 24.5, Calera de VR, Zacatecas 98500, Mexico; (M.D.H.); (L.R.R.-T.); (M.S.-P.)
| | - Angelica Judith Granados-López
- Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas “Francisco García Salinas”, Avenida Preparatoria No. 301, Colonia Hidráulica, Zacatecas 98068, Mexico;
| | - Claudia Araceli Reyes-Estrada
- Unidad Académica de Ciencias Químicas, Universidad Autónoma de Zacatecas, Campus Siglo XXI, Villanueva–Zacatecas, La Escondida, Zacatecas 98160, Mexico
| | - Jesús Adrián López
- Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas “Francisco García Salinas”, Avenida Preparatoria No. 301, Colonia Hidráulica, Zacatecas 98068, Mexico;
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21
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Sarigul N, Bozatli L, Kurultak I, Korkmaz F. Using urine FTIR spectra to screen autism spectrum disorder. Sci Rep 2023; 13:19466. [PMID: 37945643 PMCID: PMC10636094 DOI: 10.1038/s41598-023-46507-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Accepted: 11/01/2023] [Indexed: 11/12/2023] Open
Abstract
Autism spectrum disorder (ASD) is a heterogeneous neurodevelopmental disorder caused by multiple factors, lacking clear biomarkers. Diagnosing ASD still relies on behavioural and developmental signs and usually requires lengthy observation periods, all of which are demanding for both clinicians and parents. Although many studies have revealed valuable knowledge in this field, no clearly defined, practical, and widely acceptable diagnostic tool exists. In this study, 26 children with ASD (ASD+), aged 3-5 years, and 26 sex and age-matched controls are studied to investigate the diagnostic potential of the Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) spectroscopy. The urine FTIR spectrum results show a downward trend in the 3000-2600/cm region for ASD+ children when compared to the typically developing (TD) children of the same age. The average area of this region is 25% less in ASD+ level 3 children, 29% less in ASD+ level 2 children, and 16% less in ASD+ level 1 children compared to that of the TD children. Principal component analysis was applied to the two groups using the entire spectrum window and five peaks were identified for further analysis. The correlation between the peaks and natural urine components is validated by artificial urine solutions. Less-than-normal levels of uric acid, phosphate groups, and ammonium ([Formula: see text]) can be listed as probable causes. This study shows that ATR-FTIR can serve as a practical and non-invasive method to screen ASD using the high-frequency region of the urine spectrum.
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Affiliation(s)
- Neslihan Sarigul
- Institute of Nuclear Science, Hacettepe University, Ankara, Turkey.
| | - Leyla Bozatli
- Department of Child and Adolescent Psychiatry, Faculty of Medicine, Trakya University, Edirne, Turkey
| | - Ilhan Kurultak
- Department of Nephrology, Faculty of Medicine, Trakya University, Edirne, Turkey
| | - Filiz Korkmaz
- Biophysics Laboratory, Faculty of Engineering, Atilim University, Ankara, Turkey
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22
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Lu B, Tian F, Chen C, Wu W, Tian X, Chen C, Lv X. Identification of Chinese red wine origins based on Raman spectroscopy and deep learning. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 291:122355. [PMID: 36641919 DOI: 10.1016/j.saa.2023.122355] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Revised: 12/07/2022] [Accepted: 01/08/2023] [Indexed: 06/17/2023]
Abstract
In this study, we combined Raman spectroscopy with deep learning for the first time to establish an accurate, simple, and fast method to identify the origin of red wines. We collected Raman spectra from 200 red wine samples of the Cabernet Sauvignon variety from four different origins with a portable Raman spectrometer. The red wine samples, made in 2021, were from the same producer in China. Differences were found by analyzing the Raman spectra of red wine samples. These differences are mainly caused by ethanol, carboxylic acids, and polyphenols. After further analysis, for different origins, the different performances of these substances on the Raman spectrum are related to the climate and geographical conditions of the origin. The Raman spectra were analyzed by principal component analysis (PCA). The data with PCA dimensionality reduction were imported into an artificial neural network (ANN), multifeature fusion convolutional neural network (MCNN), GoogLeNet, and residual neural network (ResNet) to establish red wine origin identification models. The classification results of the model prove that climate, geography, and other conditions can provide support for the classification of red wine origin. The experiments showed that all four models performed well, among which MCNN performed the best with 93.2% classification accuracy, and the area under the curve (AUC) was 0.987. This study provides a new means to classify the origin of red wine and opens up new ideas for identifying origins in the food field.
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Affiliation(s)
- Bingxu Lu
- College of Software, Xinjiang University, Urumqi 830046, China
| | - Feng Tian
- National Institute of Metrology, China, Beijing 100000, China
| | - Cheng Chen
- College of Software, Xinjiang University, Urumqi 830046, China.
| | - Wei Wu
- College of Software, Xinjiang University, Urumqi 830046, China
| | - Xuecong Tian
- College of Software, Xinjiang University, Urumqi 830046, China
| | - Chen Chen
- College of Software, Xinjiang University, Urumqi 830046, China
| | - Xiaoyi Lv
- College of Software, Xinjiang University, Urumqi 830046, China.
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Kulko RD, Pletl A, Hanus A, Elser B. Detection of Plastic Granules and Their Mixtures. SENSORS (BASEL, SWITZERLAND) 2023; 23:3441. [PMID: 37050500 PMCID: PMC10098547 DOI: 10.3390/s23073441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Revised: 03/20/2023] [Accepted: 03/22/2023] [Indexed: 06/19/2023]
Abstract
Chemically pure plastic granulate is used as the starting material in the production of plastic parts. Extrusion machines rely on purity, otherwise resources are lost, and waste is produced. To avoid losses, the machines need to analyze the raw material. Spectroscopy in the visible and near-infrared range and machine learning can be used as analyzers. We present an approach using two spectrometers with a spectral range of 400-1700 nm and a fusion model comprising classification, regression, and validation to detect 25 materials and proportions of their binary mixtures. one dimensional convolutional neural network is used for classification and partial least squares regression for the estimation of proportions. The classification is validated by reconstructing the sample spectrum using the component spectra in linear least squares fitting. To save time and effort, the fusion model is trained on semi-empirical spectral data. The component spectra are acquired empirically and the binary mixture spectra are computed as linear combinations. The fusion model achieves very a high accuracy on visible and near-infrared spectral data. Even in a smaller spectral range from 400-1100 nm, the accuracy is high. The visible and near-infrared spectroscopy and the presented fusion model can be used as a concept for building an analyzer. Inexpensive silicon sensor-based spectrometers can be used.
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Affiliation(s)
- Roman-David Kulko
- Technologie Campus Grafenau, Technische Hochschule Deggendorf, 94481 Grafenau, Germany
| | - Alexander Pletl
- Technologie Campus Grafenau, Technische Hochschule Deggendorf, 94481 Grafenau, Germany
| | - Andreas Hanus
- Sesotec GmbH, Regener Straße 130, 94513 Schönberg, Germany
| | - Benedikt Elser
- Technologie Campus Grafenau, Technische Hochschule Deggendorf, 94481 Grafenau, Germany
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24
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Zhao B, Wu Y, Wan W, Zhu W, Li AD. Molecular modulation spectroscopy: Individual molecular spectra accurately deconvoluted from interfering systems via orthogonal reactions. J Photochem Photobiol A Chem 2023. [DOI: 10.1016/j.jphotochem.2022.114370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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25
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Yildirim MŞ, Akçan R, Aras S, Tamer U, Evran E, Taştekin B, Aydogan C, Boyaci İH. Overcoming obstacles: Analysis of blood and semen stains washed with different chemicals with ATR-FTIR. Forensic Sci Int 2023; 344:111607. [PMID: 36801543 DOI: 10.1016/j.forsciint.2023.111607] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Accepted: 02/14/2023] [Indexed: 02/17/2023]
Abstract
INTRODUCTION Blood and semen stains are the most common biological stains encountered at crime scenes. The washing of biological stains is a common application that perpetrators use to spoil the crime scene. With a structured experiment approach, this study aims to investigate the effects of washing with various chemicals on the ATR-FTIR detection of blood and semen stains on cotton. MATERIALS AND METHODS On cotton pieces, a total of 78 blood and 78 semen stains were applied, and each group of six stains was immersed or mechanically cleaned in water, 40% methanol, 5% sodium hypochlorite solution, 5% hypochlorous acid solution, 5 g/L soap dissolved pure water, and 5 g/L dishwashing detergent dissolved water. ATR-FTIR spectra gathered from all stains and analyzed with chemometric tools. RESULTS AND DISCUSSION According to performance parameters of developed models, PLS-DA is a powerful tool for discrimination of washing chemical for both washed blood and semen stains. Results from this study show that FTIR is promising for use in detecting blood and semen stains that have become invisible to the naked eye due to washing of the findings. CONCLUSION Our approach allows blood and semen to be detected on cotton pieces using FTIR combined with chemometrics, even though it is not visible to the naked eye. Washing chemicals also can be distinguished via FTIR spectra of stains.
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Affiliation(s)
- Mahmut Şerif Yildirim
- Department of Forensic Medicine, Afyonkarahisar Health Sciences University, Afyonkarahisar, Turkey.
| | - Ramazan Akçan
- Department of Forensic Medicine, Hacettepe University, Ankara, Turkey
| | - Sümer Aras
- Department of Biotechnology, Ankara University, Ankara, Turkey
| | - Uğur Tamer
- Department of Analytical Chemistry, Gazi University, Ankara, Turkey
| | - Eylül Evran
- Department of Food Engineering, Hacettepe University, Ankara, Turkey
| | - Burak Taştekin
- Department of Forensic Medicine, Ankara City Hospital, Ankara, Turkey
| | - Canberk Aydogan
- Department of Forensic Medicine, Gülhane Research and Training Hospital, Ankara, Turkey
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26
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Cao Z, Zhang S, Liu Y, Smith CJ, Sherman AM, Hwang Y, Simpson GJ. Spectral classification by generative adversarial linear discriminant analysis. Anal Chim Acta 2023; 1261:341129. [PMID: 37147049 DOI: 10.1016/j.aca.2023.341129] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Revised: 02/20/2023] [Accepted: 03/21/2023] [Indexed: 03/30/2023]
Abstract
Generative adversarial linear discriminant analysis (GALDA) is formulated as a broadly applicable tool for increasing classification accuracy and reducing overfitting in spectrochemical analysis. Although inspired by the successes of generative adversarial neural networks (GANs) for minimizing overfitting artifacts in artificial neural networks, GALDA was built around an independent linear algebra framework distinct from those in GANs. In contrast to feature extraction and data reduction approaches for minimizing overfitting, GALDA performs data augmentation by identifying and adversarially excluding the regions in spectral space in which genuine data do not reside. Relative to non-adversarial analogs, loading plots for dimension reduction showed significant smoothing and more prominent features aligned with spectral peaks following generative adversarial optimization. Classification accuracy was evaluated for GALDA together with other commonly available supervised and unsupervised methods for dimension reduction in simulated spectra generated using an open-source Raman database (Romanian Database of Raman Spectroscopy, RDRS). Spectral analysis was then performed for microscopy measurements of microsphereroids of the blood thinner clopidogrel bisulfate and in THz Raman imaging of common constituents in aspirin tablets. From these collective results, the potential scope of use for GALDA is critically evaluated relative to alternative established spectral dimension reduction and classification methods.
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Affiliation(s)
- Ziyi Cao
- Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN, 47907, USA
| | - Shijie Zhang
- Takeda Pharmaceuticals International Co, 35 Landsdowne Street, Cambridge, MA, 02139, USA
| | - Youlin Liu
- Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN, 47907, USA
| | - Casey J Smith
- Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN, 47907, USA
| | - Alex M Sherman
- Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN, 47907, USA
| | - Yechan Hwang
- Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN, 47907, USA
| | - Garth J Simpson
- Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN, 47907, USA.
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Yaman H, Aykas DP, Rodriguez-Saona LE. Monitoring Turkish white cheese ripening by portable FT-IR spectroscopy. Front Nutr 2023; 10:1107491. [PMID: 36814504 PMCID: PMC9940898 DOI: 10.3389/fnut.2023.1107491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2022] [Accepted: 01/17/2023] [Indexed: 02/08/2023] Open
Abstract
The biochemical metabolism during cheese ripening plays an active role in producing amino acids, organic acids, and fatty acids. Our objective was to evaluate the unique fingerprint-like infrared spectra of the soluble fractions in different solvents (water-based, methanol, and ethanol) of Turkish white cheese for rapid monitoring of cheese composition during ripening. Turkish white cheese samples were produced in a pilot plant scale using a mesophilic culture (Lactococcus lactis subsp. lactis, Lactococcus lactis subsp. cremoris), ripened for 100 days and samples were collected at 20-day intervals for analysis. Three extraction solvents (water, methanol, and ethanol) were selected to obtain soluble cheese fractions. Reference methods included gas chromatography (amino acids and fatty acid profiles), and liquid chromatography (organic acids) were used to obtain the reference results. FT-IR spectra were correlated with chromatographic data using pattern recognition analysis to develop regression and classification predictive models. All models showed a good fit (RPre ≥ 0.91) for predicting the target compounds during cheese ripening. Individual free fatty acids were predicted better in ethanol extracts (0.99 ≥ RPre ≥ 0.93, 1.95 ≥ SEP ≥ 0.38), while organic acids (0.98 ≥ RPre ≥ 0.97, 10.51 ≥ SEP ≥ 0.57) and total free amino acids (RPre = 0.99, SEP = 0.0037) were predicted better by using water-based extracts. Moreover, cheese compounds extracted with methanol provided the best SIMCA classification results in discriminating the different stages of cheese ripening. By using a simple methanolic extraction and collecting spectra with a portable FT-IR device provided a fast, simple, and cost-effective technique to monitor the ripening of white cheese and predict the levels of key compounds that play an important role in the biochemical metabolism of Turkish white cheese.
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Affiliation(s)
- Hulya Yaman
- Department of Food Science and Technology, The Ohio State University, Columbus, OH, United States,Department of Food Processing, Bolu Abant Izzet Baysal University, Bolu, Türkiye
| | - Didem P. Aykas
- Department of Food Science and Technology, The Ohio State University, Columbus, OH, United States,Department of Food Engineering, Adnan Menderes University, Aydin, Türkiye
| | - Luis E. Rodriguez-Saona
- Department of Food Science and Technology, The Ohio State University, Columbus, OH, United States,*Correspondence: Luis E. Rodriguez-Saona,
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28
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Gieroba B, Kalisz G, Krysa M, Khalavka M, Przekora A. Application of Vibrational Spectroscopic Techniques in the Study of the Natural Polysaccharides and Their Cross-Linking Process. Int J Mol Sci 2023; 24:ijms24032630. [PMID: 36768949 PMCID: PMC9916414 DOI: 10.3390/ijms24032630] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Revised: 01/24/2023] [Accepted: 01/27/2023] [Indexed: 02/03/2023] Open
Abstract
Polysaccharides are one of the most abundant natural polymers and their molecular structure influences many crucial characteristics-inter alia hydrophobicity, mechanical, and physicochemical properties. Vibrational spectroscopic techniques, such as infrared (IR) and Raman spectroscopies are excellent tools to study their arrangement during polymerization and cross-linking processes. This review paper summarizes the application of the above-mentioned analytical methods to track the structure of natural polysaccharides, such as cellulose, hemicellulose, glucan, starch, chitosan, dextran, and their derivatives, which affects their industrial and medical use.
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Affiliation(s)
- Barbara Gieroba
- Independent Unit of Spectroscopy and Chemical Imaging, Medical University of Lublin, Chodźki 4a Street, 20-093 Lublin, Poland
- Correspondence:
| | - Grzegorz Kalisz
- Independent Unit of Spectroscopy and Chemical Imaging, Medical University of Lublin, Chodźki 4a Street, 20-093 Lublin, Poland
| | - Mikolaj Krysa
- Independent Unit of Spectroscopy and Chemical Imaging, Medical University of Lublin, Chodźki 4a Street, 20-093 Lublin, Poland
| | - Maryna Khalavka
- Independent Unit of Spectroscopy and Chemical Imaging, Medical University of Lublin, Chodźki 4a Street, 20-093 Lublin, Poland
- Department of Industrial Technology of Drugs, National University of Pharmacy, Pushkins’ka 63 Street, 61002 Kharkiv, Ukraine
| | - Agata Przekora
- Independent Unit of Tissue Engineering and Regenerative Medicine, Medical University of Lublin, Chodźki 1 Street, 20-093 Lublin, Poland
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29
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Determination of Possible Adulteration and Quality Assessment in Commercial Honey. Foods 2023; 12:foods12030523. [PMID: 36766052 PMCID: PMC9914500 DOI: 10.3390/foods12030523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Revised: 01/18/2023] [Accepted: 01/19/2023] [Indexed: 01/26/2023] Open
Abstract
This study aims to predict several quality traits in commercial honey samples simultaneously and to reveal possible honey adulteration using a field-deployable portable infrared spectrometer without any sample preparation. A total of one hundred and forty-seven commercial honey samples were purchased from local and online markets in Turkey and the United States of America (USA), and their soluble solids (°Brix), pH, free acidity, moisture, water activity (aw), glucose, fructose, sucrose, and hydroxymethyl furfural (HMF) contents were determined using reference methods. The HMF (n = 11 samples) and sucrose (n = 21) concentrations were higher than the regulatory limits in some tested samples. The exceeding HMF content may imply temperature abuse during storage and prolonged storing. On the other hand, high sucrose content may indicate possible adulteration with commercial sweeteners. Therefore, soft independent modeling of class analogies (SIMCA) analysis was conducted to reveal this potential sweetener adulteration in the samples, and the SIMCA model was able to identify all the flagged samples. The suggested FT-IR technique may be helpful in regulatory bodies in determining honey authenticity issues as well as assessing the quality characteristics of honey samples in a shorter period and at a lower cost.
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30
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Spectroscopic, Chromatographic, and Chemometric Techniques Applied in Food Products Characterization. SEPARATIONS 2023. [DOI: 10.3390/separations10010055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
Spectroscopy is a technique indispensable for evaluating the quality of foods [...]
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31
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Munekata PES, Finardi S, de Souza CK, Meinert C, Pateiro M, Hoffmann TG, Domínguez R, Bertoli SL, Kumar M, Lorenzo JM. Applications of Electronic Nose, Electronic Eye and Electronic Tongue in Quality, Safety and Shelf Life of Meat and Meat Products: A Review. SENSORS (BASEL, SWITZERLAND) 2023; 23:672. [PMID: 36679464 PMCID: PMC9860605 DOI: 10.3390/s23020672] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/22/2022] [Revised: 12/21/2022] [Accepted: 01/04/2023] [Indexed: 06/17/2023]
Abstract
The quality and shelf life of meat and meat products are key factors that are usually evaluated by complex and laborious protocols and intricate sensory methods. Devices with attractive characteristics (fast reading, portability, and relatively low operational costs) that facilitate the measurement of meat and meat products characteristics are of great value. This review aims to provide an overview of the fundamentals of electronic nose (E-nose), eye (E-eye), and tongue (E-tongue), data preprocessing, chemometrics, the application in the evaluation of quality and shelf life of meat and meat products, and advantages and disadvantages related to these electronic systems. E-nose is the most versatile technology among all three electronic systems and comprises applications to distinguish the application of different preservation methods (chilling vs. frozen, for instance), processing conditions (especially temperature and time), detect adulteration (meat from different species), and the monitoring of shelf life. Emerging applications include the detection of pathogenic microorganisms using E-nose. E-tongue is another relevant technology to determine adulteration, processing conditions, and to monitor shelf life. Finally, E-eye has been providing accurate measuring of color evaluation and grade marbling levels in fresh meat. However, advances are necessary to obtain information that are more related to industrial conditions. Advances to include industrial scenarios (cut sorting in continuous processing, for instance) are of great value.
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Affiliation(s)
- Paulo E. S. Munekata
- Centro Tecnológico de la Carne de Galicia, Rúa Galicia N° 4, Parque Tecnológico de Galicia, San Cibrao das Viñas, 32900 Ourense, Spain
| | - Sarah Finardi
- Food Preservation & Innovation Laboratory, Department of Chemical Engineering, University of Blumenau, 3250 São Paulo St., Blumenau 89030-000, Brazil
| | - Carolina Krebs de Souza
- Food Preservation & Innovation Laboratory, Department of Chemical Engineering, University of Blumenau, 3250 São Paulo St., Blumenau 89030-000, Brazil
| | - Caroline Meinert
- Food Preservation & Innovation Laboratory, Department of Chemical Engineering, University of Blumenau, 3250 São Paulo St., Blumenau 89030-000, Brazil
| | - Mirian Pateiro
- Centro Tecnológico de la Carne de Galicia, Rúa Galicia N° 4, Parque Tecnológico de Galicia, San Cibrao das Viñas, 32900 Ourense, Spain
| | - Tuany Gabriela Hoffmann
- Food Preservation & Innovation Laboratory, Department of Chemical Engineering, University of Blumenau, 3250 São Paulo St., Blumenau 89030-000, Brazil
- Department of Horticultural Engineering, Leibniz Institute for Agricultural Engineering and Bioeconomy, 14469 Potsdam, Germany
| | - Rubén Domínguez
- Centro Tecnológico de la Carne de Galicia, Rúa Galicia N° 4, Parque Tecnológico de Galicia, San Cibrao das Viñas, 32900 Ourense, Spain
| | - Sávio Leandro Bertoli
- Food Preservation & Innovation Laboratory, Department of Chemical Engineering, University of Blumenau, 3250 São Paulo St., Blumenau 89030-000, Brazil
| | - Manoj Kumar
- Chemical and Biochemical Processing Division, ICAR–Central Institute for Research on Cotton Technology, Mumbai 400019, India
| | - José M. Lorenzo
- Centro Tecnológico de la Carne de Galicia, Rúa Galicia N° 4, Parque Tecnológico de Galicia, San Cibrao das Viñas, 32900 Ourense, Spain
- Facultade de Ciencias, Universidade de Vigo, Área de Tecnoloxía dos Alimentos, 32004 Ourense, Spain
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32
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He K, Massena DG. Examining unsupervised ensemble learning using spectroscopy data of organic compounds. J Comput Aided Mol Des 2023; 37:17-37. [PMID: 36404382 DOI: 10.1007/s10822-022-00488-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Accepted: 11/03/2022] [Indexed: 11/22/2022]
Abstract
One solution to the challenge of choosing an appropriate clustering algorithm is to combine different clusterings into a single consensus clustering result, known as cluster ensemble (CE). This ensemble learning strategy can provide more robust and stable solutions across different domains and datasets. Unfortunately, not all clusterings in the ensemble contribute to the final data partition. Cluster ensemble selection (CES) aims at selecting a subset from a large library of clustering solutions to form a smaller cluster ensemble that performs as well as or better than the set of all available clustering solutions. In this paper, we investigate four CES methods for the categorization of structurally distinct organic compounds using high-dimensional IR and Raman spectroscopy data. Single quality selection (SQI) forms a subset of the ensemble by selecting the highest quality ensemble members. The Single Quality Selection (SQI) method is used with various quality indices to select subsets by including the highest quality ensemble members. The Bagging method, usually applied in supervised learning, ranks ensemble members by calculating the normalized mutual information (NMI) between ensemble members and consensus solutions generated from a randomly sampled subset of the full ensemble. The hierarchical cluster and select method (HCAS-SQI) uses the diversity matrix of ensemble members to select a diverse set of ensemble members with the highest quality. Furthermore, a combining strategy can be used to combine subsets selected using multiple quality indices (HCAS-MQI) for the refinement of clustering solutions in the ensemble. The IR + Raman hybrid ensemble library is created by merging two complementary "views" of the organic compounds. This inherently more diverse library gives the best full ensemble consensus results. Overall, the Bagging method is recommended because it provides the most robust results that are better than or comparable to the full ensemble consensus solutions.
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Affiliation(s)
- Kedan He
- Department of Physical Sciences, School of Arts and Sciences, Eastern Connecticut State University, Willimantic, CT, 06226, USA.
| | - Djenerly G Massena
- Department of Physical Sciences, School of Arts and Sciences, Eastern Connecticut State University, Willimantic, CT, 06226, USA
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Foschi M, Tozzi L, Di Donato F, Biancolillo A, D’Archivio AA. A Novel FTIR-Based Chemometric Solution for the Assessment of Saffron Adulteration with Non-Fresh Stigmas. Molecules 2022; 28:molecules28010033. [PMID: 36615229 PMCID: PMC9821794 DOI: 10.3390/molecules28010033] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Revised: 12/18/2022] [Accepted: 12/20/2022] [Indexed: 12/24/2022] Open
Abstract
The development of fast, non-destructive, and green methods with adequate sensitivity for saffron authentication has important implications in the quality control of the entire production chain of this precious spice. In this context, the highly suitable sensitivity of a spectroscopic method coupled with chemometrics was verified. A total number of 334 samples were analyzed using attenuated-total-reflectance Fourier-transform infrared (ATR-FTIR) spectroscopy; the collected spectra were processed by partial-least-squares discriminant analysis (PLS-DA) to evaluate the feasibility of this study for the discrimination between compliant saffron (fresh samples produced in 2020) and saffron samples adulterated with non-fresh stigmas produced in 2018 and 2016. PLS-DA was able to classify the saffron samples in accordance with the aging time and to discriminate fresh samples from the samples adulterated with non-fresh (legally expired) stigmas, achieving 100% of both sensitivity and specificity in external prediction. Moreover, PLS regression was able to predict the adulteration level with sufficient accuracy (the root-mean-square error of prediction was approximately 3-5%). In summary, ATR-FTIR and chemometrics can be employed to highlight the illegal blending of fresh saffron with unsold stocks of expired saffron, which may be a common fraudulent practice not yet considered in the scientific literature.
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Rady A, Watson N. Detection and quantification of peanut contamination in garlic powder using NIR sensors and machine learning. J Food Compost Anal 2022. [DOI: 10.1016/j.jfca.2022.104820] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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35
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Hamdy O, Abdel-Salam Z, Abdel-Harith M. Utilization of laser-induced breakdown spectroscopy, with principal component analysis and artificial neural networks in revealing adulteration of similarly looking fish fillets. APPLIED OPTICS 2022; 61:10260-10266. [PMID: 36606791 DOI: 10.1364/ao.470835] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Accepted: 10/18/2022] [Indexed: 06/17/2023]
Abstract
Fish is an essential source of many nutrients necessary for human health. However, the deliberate mislabeling of similar fish fillet types is common in markets to make use of the relatively high price difference. This is a type of explicit food adulteration. In the present work, spectrochemical analysis and chemometric methods are adopted to disclose this type of fish species cheating. Laser-induced breakdown spectroscopy (LIBS) was utilized to differentiate between the fillets of the low-priced tilapia and the expensive Nile perch. Furthermore, the acquired spectroscopic data were analyzed statistically using principal component analysis (PCA) and artificial neural network (ANN) showing good discrimination in the PCA score plot and a 99% classification accuracy rate of the implemented ANN model. The recorded spectra of the two fish indicated that tilapia has a higher fat content than Nile perch, as evidenced by higher CN and C2 bands and an atomic line at 247.8 nm in its spectrum. The obtained results demonstrated the potential of using LIBS as a simple, fast, and cost-effective analytical technique, combined with statistical analysis for the decisive discrimination between fish fillet species.
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Wu W, Zhang L, Zheng X, Huang Q, Farag MA, Zhu R, Zhao C. Emerging applications of metabolomics in food science and future trends. Food Chem X 2022; 16:100500. [DOI: 10.1016/j.fochx.2022.100500] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Revised: 10/17/2022] [Accepted: 11/03/2022] [Indexed: 11/11/2022] Open
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Iroegbulem IU, Egereonu UU, Ogukwe CE, Akalezi CO, Egereonu JC, Duru CE, Okoro NJ. Assessment of Seasonal Variations in Air Quality from Lagos Metropolis and Suburbs Using Chemometric Models. CHEMISTRY AFRICA 2022. [DOI: 10.1007/s42250-022-00537-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
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38
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Msimanga HZ, Dockery CR, Vandenbos DD. Classification of local diesel fuels and simultaneous prediction of their physicochemical parameters using FTIR-ATR data and chemometrics. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 279:121451. [PMID: 35675738 DOI: 10.1016/j.saa.2022.121451] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/01/2022] [Revised: 05/21/2022] [Accepted: 05/28/2022] [Indexed: 06/15/2023]
Abstract
Class identification and prediction of physicochemical variables of eight diesel fuel brands collected from several stations within the Atlanta metropolitan area in the State of Georgia were investigated using principal component analysis (PCA), partial least squares discriminant analysis (PLS2-DA), and partial least squares regression (PLSR) as modeling techniques. The fuels were from a common pipeline, therefore, assumed to have very similar characteristics. Ten FTIR-ATR spectra per fuel brand were collected over the 650 - 4000 cm-1 mid-infrared region, and the 80 x 3351 matrix was submitted to PCA to determine if there were any clusters. Following PCA, the 80 x 3351 matrix was split into a training matrix (56x3351) and a test matrix (24x3351). PLS2-DA models were built and evaluated for class identification using dummy variables (I,0) as input matrix. For physicochemical variable predictions, models were developed via PLSR using the FTIR-ATR spectra training matrix and physicochemical variables obtained from the Georgia Department of Agriculture Labs as input. Correlation coefficients of the eight fuels ranged from 0.9960 to 0.9998. PCA revealed all eight clusters of the diesel fuels, regardless of the tight correlation coefficients range. With a 1.0 ± 0.1 cut-off for fuel identification, the PLS2-DA models showed 100% correct predictions for four or five fuel brands, and 75% correct prediction for all eight fuel brands. PLSR predicted 100% correct physicochemical variables, with a RMSEP range of 0.019 to 1.132 for all 80 variables targeted.
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Affiliation(s)
- Huggins Z Msimanga
- Kennesaw State University, Department of Chemistry and Biochemistry, 370 Paulding Avenue NW, Kennesaw GA 30144, United States of America.
| | - Christopher R Dockery
- Kennesaw State University, Department of Chemistry and Biochemistry, 370 Paulding Avenue NW, Kennesaw GA 30144, United States of America.
| | - Deidre D Vandenbos
- Kennesaw State University, Department of Chemistry and Biochemistry, 370 Paulding Avenue NW, Kennesaw GA 30144, United States of America; Present Address: AkzoNobel Wood Coatings, 1431 Progress Avenue, High Point, NC 27260, United States of America.
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Chaudhary V, Kajla P, Dewan A, Pandiselvam R, Socol CT, Maerescu CM. Spectroscopic techniques for authentication of animal origin foods. Front Nutr 2022; 9:979205. [PMID: 36204380 PMCID: PMC9531581 DOI: 10.3389/fnut.2022.979205] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Accepted: 08/29/2022] [Indexed: 11/13/2022] Open
Abstract
Milk and milk products, meat, fish and poultry as well as other animal derived foods occupy a pronounced position in human nutrition. Unfortunately, fraud in the food industry is common, resulting in negative economic consequences for customers as well as significant threats to human health and the external environment. As a result, it is critical to develop analytical tools that can quickly detect fraud and validate the authenticity of such products. Authentication of a food product is the process of ensuring that the product matches the assertions on the label and complies with rules. Conventionally, various comprehensive and targeted approaches like molecular, chemical, protein based, and chromatographic techniques are being utilized for identifying the species, origin, peculiar ingredients and the kind of processing method used to produce the particular product. Despite being very accurate and unimpeachable, these techniques ruin the structure of food, are labor intensive, complicated, and can be employed on laboratory scale. Hence the need of hour is to identify alternative, modern instrumentation techniques which can help in overcoming the majority of the limitations offered by traditional methods. Spectroscopy is a quick, low cost, rapid, non-destructive, and emerging approach for verifying authenticity of animal origin foods. In this review authors will envisage the latest spectroscopic techniques being used for detection of fraud or adulteration in meat, fish, poultry, egg, and dairy products. Latest literature pertaining to emerging techniques including their advantages and limitations in comparison to different other commonly used analytical tools will be comprehensively reviewed. Challenges and future prospects of evolving advanced spectroscopic techniques will also be descanted.
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Affiliation(s)
- Vandana Chaudhary
- College of Dairy Science and Technology, Lala Lajpat Rai University of Veterinary and Animal Sciences, Hisar, India
| | - Priyanka Kajla
- Department of Food Technology, Guru Jambheshwar University of Science and Technology, Hisar, India
| | - Aastha Dewan
- Department of Food Technology, Guru Jambheshwar University of Science and Technology, Hisar, India
| | - R. Pandiselvam
- Division of Physiology, Biochemistry and Post-Harvest Technology, ICAR–Central Plantation Crops Research Institute, Kasaragod, India
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Noviana E, Indrayanto G, Rohman A. Advances in Fingerprint Analysis for Standardization and Quality Control of Herbal Medicines. Front Pharmacol 2022; 13:853023. [PMID: 35721184 PMCID: PMC9201489 DOI: 10.3389/fphar.2022.853023] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Accepted: 04/26/2022] [Indexed: 01/01/2023] Open
Abstract
Herbal drugs or herbal medicines (HMs) have a long-standing history as natural remedies for preventing and curing diseases. HMs have garnered greater interest during the past decades due to their broad, synergistic actions on the physiological systems and relatively lower incidence of adverse events, compared to synthetic drugs. However, assuring reproducible quality, efficacy, and safety from herbal drugs remains a challenging task. HMs typically consist of many constituents whose presence and quantity may vary among different sources of materials. Fingerprint analysis has emerged as a very useful technique to assess the quality of herbal drug materials and formulations for establishing standardized herbal products. Rather than using a single or two marker(s), fingerprinting techniques take great consideration of the complexity of herbal drugs by evaluating the whole chemical profile and extracting a common pattern to be set as a criterion for assessing the individual material or formulation. In this review, we described and assessed various fingerprinting techniques reported to date, which are applicable to the standardization and quality control of HMs. We also evaluated the application of multivariate data analysis or chemometrics in assisting the analysis of the complex datasets from the determination of HMs. To ensure that these methods yield reliable results, we reviewed the validation status of the methods and provided perspectives on those. Finally, we concluded by highlighting major accomplishments and presenting a gap analysis between the existing techniques and what is needed to continue moving forward.
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Affiliation(s)
- Eka Noviana
- Departement of Pharmaceutical Chemistry, Faculty of Pharmacy, Universitas Gadjah Mada, Yogyakarta, Indonesia
| | | | - Abdul Rohman
- Departement of Pharmaceutical Chemistry, Faculty of Pharmacy, Universitas Gadjah Mada, Yogyakarta, Indonesia.,Center of Excellence, Institute for Halal Industry and Systems, Universitas Gadjah Mada, Yogyakarta, Indonesia
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Cavallini N, Pennisi F, Giraudo A, Pezzolato M, Esposito G, Gavoci G, Magnani L, Pianezzola A, Geobaldo F, Savorani F, Bozzetta E. Chemometric Differentiation of Sole and Plaice Fish Fillets Using Three Near-Infrared Instruments. Foods 2022; 11:foods11111643. [PMID: 35681393 PMCID: PMC9180159 DOI: 10.3390/foods11111643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2022] [Revised: 05/28/2022] [Accepted: 05/31/2022] [Indexed: 11/16/2022] Open
Abstract
Fish species substitution is one of the most common forms of fraud all over the world, as fish identification can be very challenging for both consumers and experienced inspectors in the case of fish sold as fillets. The difficulties in distinguishing among different species may generate a “grey area” in which mislabelling can occur. Thus, the development of fast and reliable tools able to detect such frauds in the field is of crucial importance. In this study, we focused on the distinction between two flatfish species largely available on the market, namely the Guinean sole (Synaptura cadenati) and European plaice (Pleuronectes platessa), which are very similar looking. Fifty fillets of each species were analysed using three near-infrared (NIR) instruments: the handheld SCiO (Consumer Physics), the portable MicroNIR (VIAVI), and the benchtop MPA (Bruker). PLS-DA classification models were built using the spectral datasets, and all three instruments provided very good results, showing high accuracy: 94.1% for the SCiO and MicroNIR portable instruments, and 90.1% for the MPA benchtop spectrometer. The good classification results of the approach combining NIR spectroscopy, and simple chemometric classification methods suggest great applicability directly in the context of real-world marketplaces, as well as in official control plans.
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Affiliation(s)
- Nicola Cavallini
- Department of Applied Science and Technology, Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Turin, Italy; (A.G.); (G.G.); (F.G.); (F.S.)
- Correspondence: ; Tel.: +39-011-0904713
| | - Francesco Pennisi
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, Via Bologna 148, 10154 Turin, Italy; (F.P.); (M.P.); (G.E.); (E.B.)
| | - Alessandro Giraudo
- Department of Applied Science and Technology, Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Turin, Italy; (A.G.); (G.G.); (F.G.); (F.S.)
| | - Marzia Pezzolato
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, Via Bologna 148, 10154 Turin, Italy; (F.P.); (M.P.); (G.E.); (E.B.)
| | - Giovanna Esposito
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, Via Bologna 148, 10154 Turin, Italy; (F.P.); (M.P.); (G.E.); (E.B.)
| | - Gentian Gavoci
- Department of Applied Science and Technology, Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Turin, Italy; (A.G.); (G.G.); (F.G.); (F.S.)
| | - Luca Magnani
- Esselunga S.p.A., Via Giambologna 1, 20096 Limito di Pioltello (MI), Italy; (L.M.); (A.P.)
| | - Alberto Pianezzola
- Esselunga S.p.A., Via Giambologna 1, 20096 Limito di Pioltello (MI), Italy; (L.M.); (A.P.)
| | - Francesco Geobaldo
- Department of Applied Science and Technology, Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Turin, Italy; (A.G.); (G.G.); (F.G.); (F.S.)
| | - Francesco Savorani
- Department of Applied Science and Technology, Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Turin, Italy; (A.G.); (G.G.); (F.G.); (F.S.)
| | - Elena Bozzetta
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, Via Bologna 148, 10154 Turin, Italy; (F.P.); (M.P.); (G.E.); (E.B.)
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Vasseur F, Cornet D, Beurier G, Messier J, Rouan L, Bresson J, Ecarnot M, Stahl M, Heumos S, Gérard M, Reijnen H, Tillard P, Lacombe B, Emanuel A, Floret J, Estarague A, Przybylska S, Sartori K, Gillespie LM, Baron E, Kazakou E, Vile D, Violle C. A Perspective on Plant Phenomics: Coupling Deep Learning and Near-Infrared Spectroscopy. FRONTIERS IN PLANT SCIENCE 2022; 13:836488. [PMID: 35668791 PMCID: PMC9163986 DOI: 10.3389/fpls.2022.836488] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2022] [Accepted: 03/09/2022] [Indexed: 05/31/2023]
Abstract
The trait-based approach in plant ecology aims at understanding and classifying the diversity of ecological strategies by comparing plant morphology and physiology across organisms. The major drawback of the approach is that the time and financial cost of measuring the traits on many individuals and environments can be prohibitive. We show that combining near-infrared spectroscopy (NIRS) with deep learning resolves this limitation by quickly, non-destructively, and accurately measuring a suite of traits, including plant morphology, chemistry, and metabolism. Such an approach also allows to position plants within the well-known CSR triangle that depicts the diversity of plant ecological strategies. The processing of NIRS through deep learning identifies the effect of growth conditions on trait values, an issue that plagues traditional statistical approaches. Together, the coupling of NIRS and deep learning is a promising high-throughput approach to capture a range of ecological information on plant diversity and functioning and can accelerate the creation of extensive trait databases.
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Affiliation(s)
| | - Denis Cornet
- CIRAD, UMR AGAP Institut, Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Grégory Beurier
- CIRAD, UMR AGAP Institut, Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Julie Messier
- Department of Biology, University of Waterloo, Waterloo, ON, Canada
| | - Lauriane Rouan
- CIRAD, UMR AGAP Institut, Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Justine Bresson
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | - Martin Ecarnot
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Mark Stahl
- Center for Plant Molecular Biology (ZMBP), University of Tübingen, Tübingen, Germany
| | - Simon Heumos
- Quantitative Biology Center (QBiC), University of Tübingen, Quantitative Biology Center (QBiC), University of Tübingen, Germany
- Biomedical Data Science, Department of Computer Science, University of Tübingen, Tübingen, Germany
| | - Marianne Gérard
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | - Hans Reijnen
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | - Pascal Tillard
- BPMP, Univ Montpellier, CNRS, INRAE, Montpellier, France
| | - Benoît Lacombe
- BPMP, Univ Montpellier, CNRS, INRAE, Montpellier, France
| | - Amélie Emanuel
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
- BPMP, Univ Montpellier, CNRS, INRAE, Montpellier, France
| | - Justine Floret
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
- LEPSE, Univ Montpellier, INRAE, Institut Agro, Montpellier, France
| | | | | | - Kevin Sartori
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | | | - Etienne Baron
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | - Elena Kazakou
- CEFE, Univ Montpellier, CNRS, EPHE, Institut Agro, IRD, Montpellier, France
| | - Denis Vile
- LEPSE, Univ Montpellier, INRAE, Institut Agro, Montpellier, France
| | - Cyrille Violle
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
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Application of a Cost-Effective Visible/Near Infrared Optical Prototype for the Measurement of Qualitative Parameters of Chardonnay Grapes. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12104853] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
In this paper, a cost-effective visible/near infrared optical prototype was tested for grape maturity monitoring. The device was used to quantify the qualitative parameters of Chardonnay grapes, based on the combination of spectroscopic data and the creation of predictive models. The optical acquisitions were performed directly in the field through the use of 12 wavelengths in the vis/NIR range, i.e., 450, 500, 550, 570, 600, 610, 650, 680, 730, 760, 810 and 860 nanometers. The prediction of the qualitative parameters was carried out through a multivariate model, partial least square (PLS) regression technique and built knowing the real values of the parameters, i.e., total soluble solids (TSS), titratable acidity (TA) and pH measured through the reference laboratory analyses. Sampling included two harvest years. The most efficient model was the one for TSS evaluation that gave a R2 = 0.87 (independent test set validation). The results demonstrated that the optical device is able to provide useful information about the ripening parameters of Chardonnay grapes directly in the field in order to predict its correct maturation stage and, therefore, support operators in rapid and objective decision making. Overall, the use of the prototype promotes a sustainable approach and viticulture 4.0.
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Wulandari L, Idroes R, Noviandy TR, Indrayanto G. Application of chemometrics using direct spectroscopic methods as a QC tool in pharmaceutical industry and their validation. PROFILES OF DRUG SUBSTANCES, EXCIPIENTS, AND RELATED METHODOLOGY 2022; 47:327-379. [PMID: 35396015 DOI: 10.1016/bs.podrm.2021.10.006] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
This present review described the application of chemometrics using direct spectroscopic methods at the quality control (QC) laboratory of Pharmaceutical Industries. Using chemometrics methods, all QC assessments during the fabrication processes of the drug preparations can be well performed. Chemometrics methods have some advantages compared to the conventional methods, i.e., non-destructive, can be performed directly to intake samples without any extractions, unnecessary performing stability studies, and cost-effective. To achieve reliable results of analyses, all methods must be validated first prior to routine applications. According to the current Pharmacopeia, the validation parameters are specificity/selectivity, accuracy, repeatability, intermediate precision, range, detection limit, quantification limit and robustness. These validation data must meet the acceptance criteria, that have been described by the analytical target profile (ATP) of the drug preparations.
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Affiliation(s)
| | - Rinaldi Idroes
- Department of Pharmacy, Banda Aceh, Indonesia; Department of Chemistry, Faculty of Mathematics and Natural Sciences, Syiah Kuala University, Banda Aceh, Indonesia
| | - Teuku Rizky Noviandy
- Department of Informatics, Faculty of Mathematics and Natural Sciences, Syiah Kuala University, Banda Aceh, Indonesia
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Raimondo M, Borioni A, Prestinaci F, Sestili I, Gaudiano MC. A NIR, 1H-NMR, LC-MS and chemometrics pilot study on the origin of carvedilol drug substances: a tool for discovering falsified active pharmaceutical ingredients. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2022; 14:1396-1405. [PMID: 35302118 DOI: 10.1039/d1ay02035h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Falsification of drugs, entailing the use of drug substances from unknown unapproved suppliers, is one of the main concerns for the quality of medicines. Therefore, traceability of active ingredients represents an effective tool to fight the illegal trade of medicinal products. In this view, the present pilot study explores the profile of carvedilol active ingredients and possible differences related to the origin. Sixteen samples were examined by near-infrared spectroscopy (NIR), proton nuclear magnetic resonance (1H-NMR spectrometry) and liquid chromatography mass spectrometry (LC-MS) Q-TOF and the data were analysed by principal component analysis (PCA), cluster analysis and PLSDA discriminant analysis. The results evidenced that the combined information from the three techniques gave good classification of the samples neatly distinguishing the APIs from European countries from the APIs manufactured out of Europe. In particular, NIR spectroscopy provided effective separation between European and non-European manufacturers and 1H-NMR or LC-MS added specific information related to the separation. Concerning LC-MS Q-TOF, the analysis of multiple isobaric peaks proved to be highly predictive of the drug substance origin and emerged as a promising tool in the field of medicine traceability.
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Affiliation(s)
- Mariangela Raimondo
- Chemical Medicines Unit, Centro Nazionale Controllo e Valutazione dei Farmaci, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161 Rome, Italy.
| | - Anna Borioni
- Chemical Medicines Unit, Centro Nazionale Controllo e Valutazione dei Farmaci, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161 Rome, Italy.
| | - Francesca Prestinaci
- Chemical Medicines Unit, Centro Nazionale Controllo e Valutazione dei Farmaci, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161 Rome, Italy.
| | - Isabella Sestili
- Chemical Medicines Unit, Centro Nazionale Controllo e Valutazione dei Farmaci, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161 Rome, Italy.
| | - Maria Cristina Gaudiano
- Chemical Medicines Unit, Centro Nazionale Controllo e Valutazione dei Farmaci, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161 Rome, Italy.
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Wang HP, Chen P, Dai JW, Liu D, Li JY, Xu YP, Chu XL. Recent advances of chemometric calibration methods in modern spectroscopy: Algorithms, strategy, and related issues. Trends Analyt Chem 2022. [DOI: 10.1016/j.trac.2022.116648] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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47
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Varghese VK, Poddar BJ, Shah MP, Purohit HJ, Khardenavis AA. A comprehensive review on current status and future perspectives of microbial volatile fatty acids production as platform chemicals. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 815:152500. [PMID: 34968606 DOI: 10.1016/j.scitotenv.2021.152500] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Revised: 11/26/2021] [Accepted: 12/14/2021] [Indexed: 06/14/2023]
Abstract
Volatile fatty acids (VFA), the secondary metabolite of microbial fermentation, are used in a wide range of industries for production of commercially valuable chemicals. In this review, the fermentative production of VFAs by both pure as well mixed microbial cultures is highlighted along with the strategies for enhancing the VFA production through innovations in existing approaches. Role of conventionally applied tools for the optimization of operational parameters such as pH, temperature, retention time, organic loading rate, and headspace pressure has been discussed. Furthermore, a comparative assessment of above strategies on VFA production has been done with alternate developments such as co-fermentation, substrate pre-treatment, and in situ removal from fermented broth. The review also highlights the applications of different bioreactor geometries in the optimum production of VFAs and how metagenomic tools could provide a detailed insight into the microbial communities and their functional attributes that could be subjected to metabolic engineering for the efficient production of VFAs.
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Affiliation(s)
- Vijay K Varghese
- Environmental Biotechnology and Genomics Division (EBGD), CSIR-National Environmental Engineering Research Institute (NEERI), Nagpur 440020, India
| | - Bhagyashri J Poddar
- Environmental Biotechnology and Genomics Division (EBGD), CSIR-National Environmental Engineering Research Institute (NEERI), Nagpur 440020, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Maulin P Shah
- Industrial Waste Water Research Lab, Division of Applied and Environmental Microbiology Lab, Enviro Technology Ltd., Ankleshwar 393002, India
| | - Hemant J Purohit
- Environmental Biotechnology and Genomics Division (EBGD), CSIR-National Environmental Engineering Research Institute (NEERI), Nagpur 440020, India
| | - Anshuman A Khardenavis
- Environmental Biotechnology and Genomics Division (EBGD), CSIR-National Environmental Engineering Research Institute (NEERI), Nagpur 440020, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India.
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Nelis JLD, Bose U, Broadbent JA, Hughes J, Sikes A, Anderson A, Caron K, Schmoelzl S, Colgrave ML. Biomarkers and biosensors for the diagnosis of noncompliant pH, dark cutting beef predisposition, and welfare in cattle. Compr Rev Food Sci Food Saf 2022; 21:2391-2432. [DOI: 10.1111/1541-4337.12935] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 02/02/2022] [Accepted: 02/09/2022] [Indexed: 11/29/2022]
Affiliation(s)
| | - Utpal Bose
- CSIRO Agriculture and Food St Lucia Australia
| | | | | | - Anita Sikes
- CSIRO Agriculture and Food Coopers Plains Australia
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Biancolillo A, D'Archivio AA. Transfer of gas chromatographic retention data among poly(siloxane) columns by quantitative structure-retention relationships based on molecular descriptors of both solutes and stationary phases. J Chromatogr A 2021; 1663:462758. [PMID: 34954535 DOI: 10.1016/j.chroma.2021.462758] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Revised: 12/13/2021] [Accepted: 12/15/2021] [Indexed: 10/19/2022]
Abstract
In the present study, computational molecular descriptors of 90 saturated esters and seven poly(siloxane) stationary phases with different polarity (SE-30, OV-7, DC-710, OV-25, XE-60, OV-225 and Silar-5CP) were combined into quantitative structure-retention relationship (QSRR) models aimed at predicting the Kováts retention indices (RIs) of the solutes. The molecular descriptors (174) of the stationary phases included in the models were computed using Dragon software from poly(siloxane) oligomers made of 20 siloxane units reflecting the nominal composition of the stationary phase, whereas 439 molecular descriptors were adopted to represent the esters. Different QSRR models were generated by means of Partial Least Squares (PLS) regression to assess the accuracy of this approach in predicting the RIs of unexplored solutes both in known and external stationary phases. After calibration of each PLS model, the descriptors were selected/discarded according to their relevance, evaluated by Covariance Selection (CovSel), and the PLS models were re-built, which resulted in a noticeable improvement of their predictive ability. Firstly, all the available data were equally divided into a training and a test set; the model built on the calibration set was used to predict the RIs of the validation observations. Successively, seven diverse PLS models were created following a "leave-one-column-out" fashion procedure, each one finalized to the estimation of the RIs of the 90 esters associated with a single stationary phase, whereas the calibration model was calculated on the remaining data. All the estimated models provided successful results on the external stationary phase, and predictive performance further increased after variable selection based on CovSel analysis. The final models provided a Root Mean Square Error in Cross Validation (RMSECV) in the range 12-20, a Root Mean Square Error in Prediction (RMSEP) in the range 11-26, and Mean Absolute Percentage Errors in Prediction (MAMEPs) in the range 0.7-1.5, revealing accurate cross-column prediction. Eventually, to test the robustness of the proposed approach, the 90 solutes were equally partitioned into a calibration and a test set and two further QSSR strategies were applied. The first PLS model was calibrated on all the seven stationary phases and the RIs of the 45 external solutes in the same seven columns were simultaneously predicted. The last QSRR approach followed a "leave-one-column-out" scheme and RI of 45 test solutes on an external stationary phase was predicted by a PLS model calibrated with the data of the 45 remaining solutes and the six left stationary phases. After selection of the significant molecular descriptors, PLS regression provided RMSECV values in the range 6-19, RMSEPs in the range 10-14, and MAPEPs in the range 0.9-2.4, revealing the suitability of the approach to deduce the RI of unknown solutes in uncharted stationary phases.
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Affiliation(s)
- Alessandra Biancolillo
- Dipartimento di Scienze Fisiche e Chimiche, Università degli Studi dell'Aquila, Via Vetoio, 67010 Coppito, L'Aquila, Italy
| | - Angelo Antonio D'Archivio
- Dipartimento di Scienze Fisiche e Chimiche, Università degli Studi dell'Aquila, Via Vetoio, 67010 Coppito, L'Aquila, Italy.
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Wang K, Bian X, Zheng M, Liu P, Lin L, Tan X. Rapid determination of hemoglobin concentration by a novel ensemble extreme learning machine method combined with near-infrared spectroscopy. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 263:120138. [PMID: 34304011 DOI: 10.1016/j.saa.2021.120138] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2021] [Revised: 06/23/2021] [Accepted: 06/29/2021] [Indexed: 06/13/2023]
Abstract
A novel ensemble extreme learning machine (ELM) approach that combines Monte Carlo (MC) sampling and least absolute shrinkage and selection operator (LASSO), named as MC-LASSO-ELM, is proposed to determine hemoglobin concentration of blood. It employs MC sampling to randomly select samples from the training set and LASSO further to choose variables from selected samples to establish plenty of ELM sub-models. The final prediction is obtained by combining the predictions of these sub-models. Combined with near-infrared spectroscopy, MC-LASSO-ELM is used to determine the hemoglobin concentration of blood. Compared with ELM, MC-ELM and LASSO-ELM, MC-LASSO-ELM can obtain the best stability and highest accuracy.
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Affiliation(s)
- Kaiyi Wang
- State Key Laboratory of Separation Membranes and Membrane Processes, Tiangong University, Tianjin 300387, PR China; Tianjin Key Laboratory of Green Chemical Process Engineering, School of Chemical Engineering and Technology, Tiangong University, Tianjin 300387, PR China
| | - Xihui Bian
- State Key Laboratory of Separation Membranes and Membrane Processes, Tiangong University, Tianjin 300387, PR China; Tianjin Key Laboratory of Green Chemical Process Engineering, School of Chemical Engineering and Technology, Tiangong University, Tianjin 300387, PR China; Key Lab of Process Analysis and Control of Sichuan Universities, Yibin University, 644000, PR China.
| | - Meng Zheng
- Tianjin Key Laboratory of Green Chemical Process Engineering, School of Chemical Engineering and Technology, Tiangong University, Tianjin 300387, PR China
| | - Peng Liu
- State Key Laboratory of Separation Membranes and Membrane Processes, Tiangong University, Tianjin 300387, PR China; Tianjin Key Laboratory of Green Chemical Process Engineering, School of Chemical Engineering and Technology, Tiangong University, Tianjin 300387, PR China
| | - Ligang Lin
- State Key Laboratory of Separation Membranes and Membrane Processes, Tiangong University, Tianjin 300387, PR China
| | - Xiaoyao Tan
- State Key Laboratory of Separation Membranes and Membrane Processes, Tiangong University, Tianjin 300387, PR China; Tianjin Key Laboratory of Green Chemical Process Engineering, School of Chemical Engineering and Technology, Tiangong University, Tianjin 300387, PR China
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