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Wei S, Qi B, Zhang X, Zhang H, Shi D, Wang Q, Li Y, Peng Z. Myochromella unveiled: exploring its global distribution through a public database of amplicons. BMC Microbiol 2025; 25:320. [PMID: 40413396 DOI: 10.1186/s12866-025-04036-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2024] [Accepted: 05/09/2025] [Indexed: 05/27/2025] Open
Abstract
Myochromella mammosa, a novel species from southwestern China, is distinguished by its small, solitary or gregarious basidiomata. The pileus is clock-shaped, with distinct central mastoids, edge stripes, and a darker center that flattens upon maturation. The stipe is white, firm when young, and becomes hollow and slightly thickened at the base with age. We conducted a comprehensive analysis of publicly available ITS sequences from NCBI-GenBank and fungal amplicon sequencing data from NCBI-SRA to explore the global distribution and enumeration of recorded species of Myochromella. At a 98% sequence similarity threshold, eleven species were identified, including eight without formal designations. Myochromella's diversity is primarily Northern Hemisphere-centric and tends toward endemic distribution. Leveraging amplicon sequencing data sets enables precise species diversity assessments, enhancing field collection efficiency and providing novel insights into macrofungal species diversity.
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Affiliation(s)
- Shuwei Wei
- Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, China
- Hefei Mycological Valley Innovation Institute, Hefei, China
- The Central Laboratory, Changchun Normal University, Changchun, China
| | - Bao Qi
- Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, China
| | - Xiaozhuo Zhang
- Key Laboratory of Applied Statistics of Ministry of Education, School of Mathematics and Statistics, Northeast Normal University, Changchun, China
| | - Hui Zhang
- Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, China
| | - Dongfang Shi
- The Central Laboratory, Changchun Normal University, Changchun, China
| | - Qi Wang
- Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, China.
- Hefei Mycological Valley Innovation Institute, Hefei, China.
| | - Yu Li
- Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, China.
- Hefei Mycological Valley Innovation Institute, Hefei, China.
| | - Zhanwu Peng
- Information Center, Jilin Agricultural University, Changchun, China.
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Praeg N, Steinwandter M, Urbach D, Snethlage MA, Alves RP, Apple ME, Bilovitz P, Britton AJ, Bruni EP, Chen TW, Dumack K, Fernandez-Mendoza F, Freppaz M, Frey B, Fromin N, Geisen S, Grube M, Guariento E, Guisan A, Ji QQ, Jiménez JJ, Maier S, Malard LA, Minor MA, Mc Lean CC, Mitchell EAD, Peham T, Pizzolotto R, Taylor AFS, Vernon P, van Tol JJ, Wu D, Wu Y, Xie Z, Weber B, Illmer P, Seeber J. Biodiversity in mountain soils above the treeline. Biol Rev Camb Philos Soc 2025. [PMID: 40369817 DOI: 10.1111/brv.70028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Revised: 04/04/2025] [Accepted: 04/17/2025] [Indexed: 05/16/2025]
Abstract
Biological diversity in mountain ecosystems has been increasingly studied over the last decade. This is also the case for mountain soils, but no study to date has provided an overall synthesis of the current state of knowledge. Here we fill this gap with a first global analysis of published research on cryptogams, microorganisms, and fauna in mountain soils above the treeline, and a structured synthesis of current knowledge. Based on a corpus of almost 1400 publications and the expertise of 37 mountain soil scientists worldwide, we summarise what is known about the diversity and distribution patterns of each of these organismal groups, specifically along elevation, and provide an overview of available knowledge on the drivers explaining these patterns and their changes. In particular, we document an elevation-dependent decrease in faunal diversity above the treeline, while for cryptogams there is an initial increase above the treeline, followed by a decrease towards the nival belt. Thus, our data confirm the key role that elevation plays in shaping the biodiversity and distribution of these organisms in mountain soils. The response of prokaryote diversity to elevation, in turn, was more diverse, whereas fungal diversity appeared to be substantially influenced by plants. As far as available, we describe key characteristics, adaptations, and functions of mountain soil species, and despite a lack of ecological information about the uncultivated majority of prokaryotes, fungi, and protists, we illustrate the remarkable and unique diversity of life forms and life histories encountered in alpine mountain soils. By applying rule- as well as pattern-based literature-mining approaches and semi-quantitative analyses, we identified hotspots of mountain soil research in the European Alps and Central Asia and revealed significant gaps in taxonomic coverage, particularly among biocrusts, soil protists, and soil fauna. We further report thematic priorities for research on mountain soil biodiversity above the treeline and identify unanswered research questions. Building upon the outcomes of this synthesis, we conclude with a set of research opportunities for mountain soil biodiversity research worldwide. Soils in mountain ecosystems above the treeline fulfil critical functions and make essential contributions to life on land. Accordingly, seizing these opportunities and closing knowledge gaps appears crucial to enable science-based decision making in mountain regions and formulating laws and guidelines in support of mountain soil biodiversity conservation targets.
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Affiliation(s)
- Nadine Praeg
- Department of Microbiology, Universität Innsbruck, Technikerstrasse 25d, Innsbruck, 6020, Austria
| | - Michael Steinwandter
- Institute for Alpine Environment, Eurac Research, Viale Druso 1, Bozen/Bolzano, 39100, Italy
| | - Davnah Urbach
- Global Mountain Biodiversity Assessment (GMBA), University of Bern, Altenbergrain 21, Bern, 3013, Switzerland
- Institute of Plant Sciences, University of Bern, Altenbergrain 21, Bern, 3013, Switzerland
- Centre Interdisciplinaire de Recherche sur la Montagne, University of Lausanne, Ch. de l'Institut 18, Bramois/Sion, 1967, Switzerland
| | - Mark A Snethlage
- Global Mountain Biodiversity Assessment (GMBA), University of Bern, Altenbergrain 21, Bern, 3013, Switzerland
- Institute of Plant Sciences, University of Bern, Altenbergrain 21, Bern, 3013, Switzerland
- Centre Interdisciplinaire de Recherche sur la Montagne, University of Lausanne, Ch. de l'Institut 18, Bramois/Sion, 1967, Switzerland
| | - Rodrigo P Alves
- Institute of Biology, Division of Plant Sciences, University of Graz, Holteigasse 6, Graz, 8010, Austria
| | - Martha E Apple
- Department of Biological Sciences, Montana Technological University, Butte, 59701, MT, USA
| | - Peter Bilovitz
- Institute of Biology, Division of Plant Sciences, University of Graz, Holteigasse 6, Graz, 8010, Austria
| | - Andrea J Britton
- Ecological Sciences, The James Hutton Institute, Craigiebuckler, Aberdeen, AB15 8QH, Scotland, UK
| | - Estelle P Bruni
- Laboratory of Soil Biodiversity, University of Neuchâtel, Rue Emile-Argand 11, Neuchâtel, 2000, Switzerland
| | - Ting-Wen Chen
- Biology Centre of the Czech Academy of Sciences, Institute of Soil Biology and Biogeochemistry, Na Sádkách 702/7, České Budějovice, 37005, Czech Republic
- J.F. Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Untere Karspüle 2, Göttingen, 37073, Germany
| | - Kenneth Dumack
- Terrestrial Ecology, Cologne Biocenter, University of Cologne, Zülpicher Strasse 47b, Cologne, 50674, Germany
| | - Fernando Fernandez-Mendoza
- Institute of Biology, Division of Plant Sciences, University of Graz, Holteigasse 6, Graz, 8010, Austria
| | - Michele Freppaz
- Department of Agricultural, Forest and Food Sciences, University of Turin, Largo Paolo Braccini 2, Grugliasco, 10095, Italy
- Research Center on Natural Risks in Mountain and Hilly Environments, University of Turin, Largo Paolo Braccini 2, Grugliasco, 10095, Italy
| | - Beat Frey
- Forest Soils and Biogeochemistry, Swiss Federal Research Institute WSL, Birmensdorf, 8903, Switzerland
| | - Nathalie Fromin
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Univ Paul Valéry Montpellier 3, Route de Mende 34199, Montpellier Cedex 5, France
| | - Stefan Geisen
- Laboratory of Nematology, Wageningen University and Research, Droevendaalsesteeg 1, Wageningen 6708PB, The Netherlands
| | - Martin Grube
- Institute of Biology, Division of Plant Sciences, University of Graz, Holteigasse 6, Graz, 8010, Austria
| | - Elia Guariento
- Institute for Alpine Environment, Eurac Research, Viale Druso 1, Bozen/Bolzano, 39100, Italy
| | - Antoine Guisan
- Department of Ecology and Evolution (DEE), University of Lausanne, Biophore, Lausanne, 1015, Switzerland
- Institute of Earth Surface Dynamics (IDYST), University of Lausanne, Géopolis, Lausanne, 1015, Switzerland
| | - Qiao-Qiao Ji
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun, 130102, China
| | - Juan J Jiménez
- Instituto Pirenaico de Ecología (IPE), Consejo Superior de Investigaciones Cientificas (CSIC), Avda. Ntra. Sra. de la Victoria 16, Jaca, 22700, Huesca, Spain
| | - Stefanie Maier
- Institute of Biology, Division of Plant Sciences, University of Graz, Holteigasse 6, Graz, 8010, Austria
| | - Lucie A Malard
- Department of Ecology and Evolution (DEE), University of Lausanne, Biophore, Lausanne, 1015, Switzerland
| | - Maria A Minor
- School of Food Technology and Natural Sciences, Massey University, Riddett Road, Palmerston North, 4410, New Zealand
| | - Cowan C Mc Lean
- Department of Soil, Crop and Climate Sciences, University of the Free State, 205 Nelson Mandela Drive, Bloemfontein, 9300, South Africa
| | - Edward A D Mitchell
- Laboratory of Soil Biodiversity, University of Neuchâtel, Rue Emile-Argand 11, Neuchâtel, 2000, Switzerland
| | - Thomas Peham
- Department of Ecology, Universität Innsbruck, Technikerstrasse 25, Innsbruck, 6020, Austria
| | - Roberto Pizzolotto
- Dipartimento di Biologia, Ecologia e Scienze della Terra, University of Calabria, Ponte Pietro Bucci 4b, Rende, 87036, Italy
| | - Andy F S Taylor
- Ecological Sciences, The James Hutton Institute, Craigiebuckler, Aberdeen, AB15 8QH, Scotland, UK
| | - Philippe Vernon
- UMR 6553 EcoBio CNRS, University of Rennes, Biological Station, Paimpont, 35380, France
| | - Johan J van Tol
- Department of Soil, Crop and Climate Sciences, University of the Free State, 205 Nelson Mandela Drive, Bloemfontein, 9300, South Africa
| | - Donghui Wu
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun, 130102, China
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, 2555 Jingyue Street, Changchun, 130117, China
| | - Yunga Wu
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, 2555 Jingyue Street, Changchun, 130117, China
| | - Zhijing Xie
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, 2555 Jingyue Street, Changchun, 130117, China
| | - Bettina Weber
- Institute of Biology, Division of Plant Sciences, University of Graz, Holteigasse 6, Graz, 8010, Austria
| | - Paul Illmer
- Department of Microbiology, Universität Innsbruck, Technikerstrasse 25d, Innsbruck, 6020, Austria
| | - Julia Seeber
- Institute for Alpine Environment, Eurac Research, Viale Druso 1, Bozen/Bolzano, 39100, Italy
- Department of Ecology, Universität Innsbruck, Technikerstrasse 25, Innsbruck, 6020, Austria
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Chen LG, Chen H, Ding L, Xu YQ, Zeng H, Wang SN, Yan JQ. Four new species of Entoloma subgenus Cyanula (Entolomataceae, Agaricales) from subtropical regions of China. MycoKeys 2025; 116:303-325. [PMID: 40337074 PMCID: PMC12056515 DOI: 10.3897/mycokeys.116.145568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2024] [Accepted: 04/08/2025] [Indexed: 05/09/2025] Open
Abstract
In this study, four species of EntolomasubgenusCyanula (E.orientosinense, E.subgriseosquamulosum, E.subpraegracile, and E.wuyishanense) from subtropical regions of China, are described as new to science based on morphological and phylogenetic analyses. Morphologically, E.orientosinense is characterized by the white basidiomata, relatively large basidiospores, and carneogriseum-type lamellae edge; E.subgriseosquamulosum is recognized by the fuscous pileus, crowded and adnate lamellae, and medium-sized basidiospores; E.subpraegracile is identified by the yellow pileus and intervenose lamellae with sterile or heterogeneous edge; E.wuyishanense is distinct by the blue basidiomata and fertile lamellae edge with slightly bluish pigmentation near the stipe. Entolomaorientosinense belongs to sect. Caesiocincta, subsect. Queletia, and E.wuyishanense belongs to sect. Poliopodes. The remaining two species each form independent branches and do not belong to any known sections. Detailed descriptions, color photos, and a key to related species are presented.
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Affiliation(s)
- Lin-Gen Chen
- Jiangxi Provincial Key Laboratory of Excavation and Utilization of Agricultural Microorganisms, Jiangxi Agricultural University, Nanchang 330045, China
| | - Hong Chen
- Jiangxi Provincial Key Laboratory of Excavation and Utilization of Agricultural Microorganisms, Jiangxi Agricultural University, Nanchang 330045, China
| | - Ling Ding
- Jiangxi Provincial Key Laboratory of Excavation and Utilization of Agricultural Microorganisms, Jiangxi Agricultural University, Nanchang 330045, China
| | - Yu-Qin Xu
- Jiangxi Provincial Key Laboratory of Excavation and Utilization of Agricultural Microorganisms, Jiangxi Agricultural University, Nanchang 330045, China
| | - Hui Zeng
- Institute of Edible mushroom, Fujian Academy of Agricultural Sciences, Fuzhou 350011, China
| | - Sheng-Nan Wang
- Jiangxi Provincial Key Laboratory of Excavation and Utilization of Agricultural Microorganisms, Jiangxi Agricultural University, Nanchang 330045, China
| | - Jun-Qing Yan
- Jiangxi Provincial Key Laboratory of Excavation and Utilization of Agricultural Microorganisms, Jiangxi Agricultural University, Nanchang 330045, China
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Li J, Li Y, Li J, Jiang N. Species of Diaporthe (Diaporthaceae, Diaporthales) associated with Alnusnepalensis leaf spot and branch canker diseases in Xizang, China. MycoKeys 2025; 116:185-204. [PMID: 40313691 PMCID: PMC12044343 DOI: 10.3897/mycokeys.116.142750] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2024] [Accepted: 03/31/2025] [Indexed: 05/03/2025] Open
Abstract
Alnusnepalensis is an important tree species in the Himalayas with significant ecological and economic roles. During disease surveys in Xizang, China, we observed leaf spot and branch canker symptoms on this tree. Fungal isolates associated with these diseases were collected and identified based on morphological characteristics and phylogenetic analysis of ITS, cal, his3, tef1, and tub2 sequences. As a result, Diaporthealnicola sp. nov. and D.amygdali were identified from the leaf spots, while D.linzhiensis was identified to be associated with the cankered branches. This study identifies pathogenic species from alder trees, providing a foundation for future disease management and forest health research.
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Affiliation(s)
- Jieting Li
- Institute of Xizang Plateau Ecology, Key Laboratory of Forest Ecology in Xizang Plateau (Xizang Agricultural and Animal Husbandry University), Ministry of Education, Linzhi, Xizang 860000, ChinaXizang Agricultural and Animal Husbandry UniversityLinzhiChina
- National Forest Ecosystem Observation & Research Station of Linzhi Xizang, Linzhi, Xizang 860000, ChinaNational Forest Ecosystem Observation & Research Station of Linzhi XizangLinzhiChina
| | - Yi Li
- Institute of Xizang Plateau Ecology, Key Laboratory of Forest Ecology in Xizang Plateau (Xizang Agricultural and Animal Husbandry University), Ministry of Education, Linzhi, Xizang 860000, ChinaXizang Agricultural and Animal Husbandry UniversityLinzhiChina
- National Forest Ecosystem Observation & Research Station of Linzhi Xizang, Linzhi, Xizang 860000, ChinaNational Forest Ecosystem Observation & Research Station of Linzhi XizangLinzhiChina
| | - Jiangrong Li
- Institute of Xizang Plateau Ecology, Key Laboratory of Forest Ecology in Xizang Plateau (Xizang Agricultural and Animal Husbandry University), Ministry of Education, Linzhi, Xizang 860000, ChinaXizang Agricultural and Animal Husbandry UniversityLinzhiChina
- National Forest Ecosystem Observation & Research Station of Linzhi Xizang, Linzhi, Xizang 860000, ChinaNational Forest Ecosystem Observation & Research Station of Linzhi XizangLinzhiChina
| | - Ning Jiang
- Key Laboratory of Forest Protection of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, ChinaEcology and Nature Conservation Institute, Chinese Academy of ForestryBeijingChina
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Apurillo CCS, Phukhamsakda C, Hyde KD, Thiyagaraja V, Jones EBG. New fungal genus, three novel species and one new record from mangroves, with reclassification of Melanconiella (Melanconiellaceae) species. MycoKeys 2025; 116:25-52. [PMID: 40235465 PMCID: PMC11997611 DOI: 10.3897/mycokeys.116.137351] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2024] [Accepted: 12/19/2024] [Indexed: 04/17/2025] Open
Abstract
Mangrove ecosystems, located in the land-sea interface, host a diverse array of fungi. In this paper, we introduce a novel genus, three novel species and one new record of fungi collected from mangrove environments in Pranburi, Prachuap Khiri Khan, Thailand. We establish Pseudomelanconiella as a new genus in Melanconiellaceae, to accommodate Pseudomelanconiellamangrovei, a saprobe from submerged decomposing wood of Avicenniamarina. Phylogenetic analysis indicates its close relation with Septomelanconiella, but they differ in the morphology of the conidia. Additionally, our analysis of Melanconiellaceae led to the reclassification of Melanconiellaloropetali to Sinodisculaloropetali and synonymizing Sinodisculacamellicola and Melanconiellacamelliae. This paper also introduces two other novel species: Peroneutypahibisci, a saprobe found on Hibiscustiliaceus and Pseudochaetosphaeronemabruguierae from Bruguieracylindrica, the first species in this genus reported as a mangrove fungus. A new record of Rimoramangrovei from Ceriopstagal is also reported. These discoveries emphasize the rich fungal diversity in mangrove ecosystems supporting further exploration of this unique environment.
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Affiliation(s)
- Carlo Chris S. Apurillo
- Key Laboratory of Phytochemistry and Natural Medicines, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | | | - Kevin D. Hyde
- Key Laboratory of Phytochemistry and Natural Medicines, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Vinodhini Thiyagaraja
- Key Laboratory of Phytochemistry and Natural Medicines, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China
| | - E. B. Gareth Jones
- Department of Science and Technology-Center for Research in Science and Technology (CReST), Philippine Science High School-Eastern Visayas Campus, Palo, Leyte 6501 Philippines
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Seo CW, Yoo S, Cho Y, Kim JS, Steinegger M, Lim YW. FunVIP: Fungal Validation and Identification Pipeline based on phylogenetic analysis. J Microbiol 2025; 63:e2411017. [PMID: 40313148 DOI: 10.71150/jm.2411017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2024] [Accepted: 01/20/2025] [Indexed: 05/03/2025]
Abstract
The increase of sequence data in public nucleotide databases has made DNA sequence-based identification an indispensable tool for fungal identification. However, the large proportion of mislabeled sequence data in public databases leads to frequent misidentifications. Inaccurate identification is causing severe problems, especially for industrial and clinical fungi, and edible mushrooms. Existing species identification pipelines require separate validation of a dataset obtained from public databases containing mislabeled taxonomic identifications. To address this issue, we developed FunVIP, a fully automated phylogeny-based fungal validation and identification pipeline (https://github.com/Changwanseo/FunVIP). FunVIP employs phylogeny-based identification with validation, where the result is achievable only with a query, database, and a single command. FunVIP command comprises nine steps within a workflow: input management, sequence-set organization, alignment, trimming, concatenation, model selection, tree inference, tree interpretation, and report generation. Users may acquire identification results, phylogenetic tree evidence, and reports of conflicts and issues detected in multiple checkpoints during the analysis. The conflicting sample validation performance of FunVIP was demonstrated by re-iterating the manual revision of a fungal genus with a database with mislabeled sequences, Fuscoporia. We also compared the identification performance of FunVIP with BLAST and q2-feature-classifier with two mass double-revised fungal datasets, Sanghuangporus and Aspergillus section Terrei. Therefore, with its automatic validation ability and high identification performance, FunVIP proves to be a highly promising tool for achieving easy and accurate fungal identification.
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Affiliation(s)
- Chang Wan Seo
- School of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea
- Institute of Biodiversity, Seoul National University, Seoul 08826, Republic of Korea
| | - Shinnam Yoo
- School of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea
- Institute of Biodiversity, Seoul National University, Seoul 08826, Republic of Korea
| | - Yoonhee Cho
- School of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea
- Institute of Biodiversity, Seoul National University, Seoul 08826, Republic of Korea
| | - Ji Seon Kim
- School of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea
- Institute of Biodiversity, Seoul National University, Seoul 08826, Republic of Korea
| | - Martin Steinegger
- School of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea
- Institute of Molecular Biology and Genetics, Seoul National University, Seoul 08826, Republic of Korea
- Artificial Intelligence Institute, Seoul National University, Seoul 08826, Republic of Korea
| | - Young Woon Lim
- School of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea
- Institute of Biodiversity, Seoul National University, Seoul 08826, Republic of Korea
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Judžentienė A, Šarlauskas J. Comparative Research of Antioxidant, Antimicrobial, Antiprotozoal and Cytotoxic Activities of Edible Suillus sp. Fruiting Body Extracts. Foods 2025; 14:1130. [PMID: 40238251 PMCID: PMC11988316 DOI: 10.3390/foods14071130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2025] [Revised: 03/12/2025] [Accepted: 03/22/2025] [Indexed: 04/18/2025] Open
Abstract
The aim of this study was to evaluate bioactive properties of Basidiomycota fungi, mainly Suillus sp. Wide spectrum of activities were revealed for S. variegatus, S. luteus, S. bovinus and S. granulatus; and obtained results were compared with other common fungi. Total Phenolic Content (TPC) varied from 245.32 ± 5.45 to 580.77 ± 13.10 (mg (GAE) per 100 g of dry weight) in methanolic extracts of S. bovinus and S. granulatus fruiting bodies, respectively. In ethyl acetate extracts, the highest TPC were obtained for S. variegatus (310 ± 9.68, mg (GAE)/100 g, dry matter), and the lowest means for S. luteus (105 ± 3.55, mg (GAE)/100 g dry weight). The ethyl acetate extracts of the tested Suillus species exhibited a stronger antioxidant activity (AA) to scavenge DPPH● and ABTS•+ than the methanolic ones, and the highest effects were determined for S. luteus (EC50, 0.15 ± 0.05 and 0.23 ± 0.05%, respectively). In the case of methanolic extracts, the highest AA were evaluated for S. granulatus. (EC50 for DPPH● and ABTS•+, 0.81 ± 0.30 and 0.95 ± 0.22%, respectively). The ABTS•+ scavenging potential varied from 0.25 ± 0.05 to 0.74 ± 0.10 (mmol/L, TROLOX equivalent, for S. granulatus and S. variegatus fruiting body extracts, respectively) in the ethyl acetate extracts. S. granulatus extracts demonstrated the widest range of antimicrobial effects against both gram-positive and gram-negative bacteria (from 11.7 ± 1.3 to 28.5 ± 3.3 mm against Pseudomonas aeruginosa and Bacillus mycoides, respectively); and against two fungal strains (up to 13.6 ± 0.4 mm on Meyerozyma guilliermondii) in agar disc diffusion tests. Our study revealed that methanolic extracts of the most tested Suillus sp. were not active enough against the tested parasites: Trypanosoma cruzi, Trypanosoma brucei, Leishmania infantum and Plasmodium falciparum. Only S. variegatus extracts showed good antiprotozoal effects against P. falciparum (12.70 µg/mL). Cytotoxic activity was observed on human diploid lung cells MRC-5 SV2 by S. granulatus extracts (64.45 µg/mL). For comparative purposes, extracts of other common Lithuanian fungi, such as Xerocomus sp. (X. badius, X. chrysenteron and X. subtomentosus), Tylopilus felleus, Phallus impudicus and Pycnoporus cinnabarinus were investigated for their activity. The P. cinnabarinus extracts demonstrated the highest and broadest overall effects: 1.32 µg/mL against T. brucei, 1.46 µg/mL against P. falciparum, 3.93 µg/mL against T. cruzi and 21.53 µg/mL against L. infantum. Additionally, this extract exhibited strong cytotoxicity on MRC-5 cells (13.05 µg/mL). The investigation of bioactive fungal metabolites is important for the development of a new generation of antioxidants, antimicrobials, antiparasitic and anticancer agents.
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Affiliation(s)
- Asta Judžentienė
- Institute of Biosciences, Life Sciences Center, Vilnius University, Saulėtekio Avenue 7, LT-10257 Vilnius, Lithuania
- Department of Organic Chemistry, Center for Physical Sciences and Technology, Saulėtekio Avenue 3, LT-10257 Vilnius, Lithuania
| | - Jonas Šarlauskas
- Department of Xenobiotics Biochemistry, Institute of Biochemistry, Life Sciences Center, Vilnius University, LT-10257 Vilnius, Lithuania;
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Phukhamsakda C, Hyde KD, Samarakoon MC, Louangphan J, Navasit K, Al-Otibi F, Bhunjun CS. Unveiling Sordariomycetes taxa associated with woody litter in Northern Thailand. MycoKeys 2025; 115:155-185. [PMID: 40134631 PMCID: PMC11933910 DOI: 10.3897/mycokeys.115.145330] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2024] [Accepted: 02/12/2025] [Indexed: 03/27/2025] Open
Abstract
Sordariomycetes species are abundant in woody litter samples. In this study, we introduce two novel species, Diaporthethailandica (Diaporthaceae) and Occultithecachiangraiensis (Xylariaceae), from woody litter materials. We also describe a new host record of D.tulliensis and a new geographical record for D.melonis. All collections were identified based on morphology and phylogenetic analyses of combined datasets. The morphologies of the taxa fit the generic concepts of Diaporthe and Occultitheca, respectively. Diaporthethailandica formed a sister clade with D.raonikayaporum but differs from D.raonikayaporum in the sizes of conidiomata, conidiogenous cells, and beta conidia. Diaporthethailandica also differs from D.raonikayaporum by the absence of gamma conidia. Occultithecachiangraiensis differs from the sister taxon O.rosae in having smaller ascomata and a thicker mucilaginous sheath. We also provide a synopsis of Occultitheca species with details on their morphology, host, and country. These findings provide valuable insights into the diversity and ecological roles of Sordariomycetes, emphasising the need for continued exploration of fungal biodiversity in various environments.
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Affiliation(s)
- Chayanard Phukhamsakda
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Kevin D. Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming, Yunnan 650201, China
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 22452, Riyadh 11495, Saudi Arabia
| | - Milan C. Samarakoon
- Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Johnny Louangphan
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming, Yunnan 650201, China
| | - Kedsara Navasit
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Fatimah Al-Otibi
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 22452, Riyadh 11495, Saudi Arabia
| | - Chitrabhanu S. Bhunjun
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
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9
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Zhang GQ, Li ZM, Fan XL, Li QR, Kumla J, Suwannarach N, Elgorban AM, Moussa IM, Dai DQ, Wijayawardene NN. Fungi from Malus in Qujing, China: two new species, three new records, and insights into potential host jumping and lifestyle switching. Front Cell Infect Microbiol 2025; 15:1517908. [PMID: 40134789 PMCID: PMC11933099 DOI: 10.3389/fcimb.2025.1517908] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2024] [Accepted: 02/06/2025] [Indexed: 03/27/2025] Open
Abstract
Apple trees [Malus domestica Borkh. (Rosaceae)] are one of the important temperate fruit crops in China. In comparison to other temperate fruits, such as grapes and pears, fungal studies (in Yunnan) associated with M. domestica are fewer in number. In the present study, we investigated fungi associated with M. domestica in Qujing City, Yunnan Province, China. Samples were collected from apple gardens in different locations. Single spore isolation was carried out to isolate saprobic fungi, while the surface sterilization method was carried out to isolate endophytic fungi. Molecular analyses were carried out to determine the phylogenetic placement of the new collections. Based on the combined methods of morphology and phylogeny, Cytospora qujingensis sp. nov. and Hypoxylon malongense sp. nov. are introduced as novel saprobic and endophytic taxa, respectively. Moreover, Aureobasidium pullulans and Cytospora schulzeri are reported as new geological records from southwestern China. Allocryptovalsa castaneae is reported on M. domestica in China for the first time. The checklist of fungi associated with M. domestica in China is presented.
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Affiliation(s)
- Gui-Qing Zhang
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biology and Food Engineering, Qujing Normal University, Qujing, China
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai, Thailand
| | - Zhu-Mei Li
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biology and Food Engineering, Qujing Normal University, Qujing, China
| | - Xin-Lei Fan
- The Key Laboratory for Silviculture and Conservation of the Ministry of Education, Beijing Forestry University, Beijing, China
| | - Qi-Rui Li
- Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang, Guizhou, China
- The High Efficacy Application of Natural Medicinal Resources Engineering Centre of Guizhou Province (The Key Laboratory of Optimal Utilization of Natural Medicine Resources), School of Pharmaceutical Sciences, Guizhou Medical University, Gui’an, Guizhou, China
| | - Jaturong Kumla
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai, Thailand
| | - Nakarin Suwannarach
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai, Thailand
| | - Abdallah M. Elgorban
- Center of Excellence in Biotechnology Research, King Saud University, Riyadh, Saudi Arabia
| | - Ihab M. Moussa
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Dong-Qin Dai
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biology and Food Engineering, Qujing Normal University, Qujing, China
| | - Nalin N. Wijayawardene
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biology and Food Engineering, Qujing Normal University, Qujing, China
- Tropical Microbiology Research Foundation, Colombo, Sri Lanka
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10
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He S, Thiyagaraja V, Bhunjun CS, Chomnunti P, Dissanayake LS, Jayawardena RS, Yang H, Zhao YW, Al-Otibi F, Zhao Q, Hyde KD. Morphology and multi-gene phylogeny reveal three new species of Clonostachys and two combinations of Sesquicillium (Bionectriaceae, Hypocreales) from Xizang, China. MycoKeys 2025; 115:43-66. [PMID: 40109774 PMCID: PMC11920821 DOI: 10.3897/mycokeys.115.139757] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2024] [Accepted: 01/23/2025] [Indexed: 03/22/2025] Open
Abstract
Clonostachys and Sesquicillium are genera in Bionectriaceae, and known in sexual perithecial ascomata and hyphomycetous asexual morphs. In their asexual morph, both genera share similar morphology in conidiophores and conidiogenous cell characteristics but differ in the development of conidiophores. The members of Clonostachys are distributed worldwide with the majority occurring in the tropics and the species are commonly reported as soil-borne fungi but also reported as endophytes, epiphytes, and saprotrophs. During a microfungi survey in Xizang, China, six collections of fresh and healthy Ageratinaadenophora and Houttuyniacordata leaves were obtained. The taxonomy of these collections was investigated through a combination of morphological analysis and multigene phylogenetic analysis using Maximum likelihood and Bayesian inference. The newly generated sequences were clustered within Clonostachys and Sesquicillium, showing hyphomycetes asexual morph. The results revealed three new Clonostachys species viz, Clonostachyslinzhiensis, C.motuoensis, and C.yadongensis. This research sheds light on the overlooked fungal diversity in Xizang, China, expanding the known fungal biodiversity in the region. Additionally, two new combinations, Sesquicilliumaquaticum and S.shanghaiense for C.aquatica and C.shanghaiensis, and one synonymy, C.viticola for C.swietenia are established, respectively.
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Affiliation(s)
- Shucheng He
- State Key Laboratory of Phytochemistry and Natural Medicines, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China Mae Fah Luang University Chiang Rai Thailand
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand Chinese Academy of Sciences Yunnan China
| | - Vinodhini Thiyagaraja
- State Key Laboratory of Phytochemistry and Natural Medicines, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China Mae Fah Luang University Chiang Rai Thailand
| | - Chitrabhanu S Bhunjun
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand Chinese Academy of Sciences Yunnan China
| | - Putarak Chomnunti
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand Chinese Academy of Sciences Yunnan China
| | - Lakmali S Dissanayake
- Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe County 654400, China Chinese Academy of Sciences Honghe County China
- State Key Laboratory of Phytochemistry and Natural Medicines, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China Mae Fah Luang University Chiang Rai Thailand
| | - Ruvishika S Jayawardena
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand Chinese Academy of Sciences Yunnan China
| | - Hongde Yang
- State Key Laboratory of Phytochemistry and Natural Medicines, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China Mae Fah Luang University Chiang Rai Thailand
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China Mae Fah Luang University Chiang Rai China
| | - Yun Wei Zhao
- State Key Laboratory of Phytochemistry and Natural Medicines, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China Mae Fah Luang University Chiang Rai Thailand
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan University, Kunming, Yunnan, 650091, China Yunnan University Yunnan China
| | - Fatimah Al-Otibi
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 22452, Riyadh 11495, Saudi Arabia King Saud University Riyadh Saudi Arabia
| | - Qi Zhao
- State Key Laboratory of Phytochemistry and Natural Medicines, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China Mae Fah Luang University Chiang Rai Thailand
| | - Kevin D Hyde
- State Key Laboratory of Phytochemistry and Natural Medicines, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China Mae Fah Luang University Chiang Rai Thailand
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand Chinese Academy of Sciences Yunnan China
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 22452, Riyadh 11495, Saudi Arabia King Saud University Riyadh Saudi Arabia
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11
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Su P, Liao Y, Jin Y, Chen Y, Madhushan A, Liu JK, Maharachchikumbura SSN. Five New Phyllachora Species from Tar Spot Fungi on Poaceae in Sichuan China. J Fungi (Basel) 2025; 11:208. [PMID: 40137246 PMCID: PMC11943046 DOI: 10.3390/jof11030208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2025] [Revised: 03/03/2025] [Accepted: 03/05/2025] [Indexed: 03/27/2025] Open
Abstract
Tar spot is a prevalent fungal disease characterized by shiny black spots on the leaves, stems, and fruits of various plants. It is typically caused by members of the family Phyllachoraceae, which consists of biotrophic and obligate plant parasitic fungi. During field investigations of tar spot fungi in Sichuan Province, China, 70 fungal samples associated with tar spots belonging to the family Poaceae were collected from 13 different locations. Through morphological studies and multi-locus phylogenetic analysis of combined ITS, SSU, and LSU datasets, the collected samples were classified into eight Phyllachora species. Among these, five were identified as new species (Phyllachora cylindricae, P. festucae, P. luzhouensis, P. palmifoliae, and P. wenchuanensis), and two represented new host records (P. chongzhouensis, P. panicicola). The new species are accompanied by descriptions and illustrations, while their characteristics are discussed in relation to comparable taxa. Additionally, P. yuanjiangensis is synonymized under P. xinpingensis. These findings enhance our understanding of tar spot fungi in Sichuan and, given that Phyllachora species are important pathogens of plants in the Poaceae family, establish a foundation for further research to better understand their potential impacts on agriculture and the local ecology.
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Affiliation(s)
| | | | | | | | | | - Jian-Kui Liu
- School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 611731, China; (P.S.); (Y.L.); (Y.J.); (Y.C.); (A.M.)
| | - Sajeewa S. N. Maharachchikumbura
- School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 611731, China; (P.S.); (Y.L.); (Y.J.); (Y.C.); (A.M.)
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12
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Manz C, Amalfi M, Buyck B, Hampe F, Yorou NS, Adamčík S, Piepenbring M. Just the tip of the iceberg: uncovering a hyperdiverse clade of African Russula ( Basidiomycota, Russulales, Russulaceae) species with signs of evolutionary habitat adaptations. IMA Fungus 2025; 16:e140321. [PMID: 40052072 PMCID: PMC11882026 DOI: 10.3897/imafungus.16.140321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2024] [Accepted: 12/04/2024] [Indexed: 03/09/2025] Open
Abstract
The diversity within the ectomycorrhizal genus Russula (Basidiomycota) in West Africa is largely unexplored. The study area was Benin, where only ten out of the 159 species endemic to tropical Africa have been previously reported. We focused on "Afrovirescentinae", which is a monophyletic lineage within Russulasubgen.Heterophyllidiaesister tosubsect.Virescentinae. The phylogenetic placement of this clade was analysed using sequence data from ITS, LSU, mtSSU, tef1, rpb1 and rpb2 regions. Ten "Afrovirescentinae" species are recognised, described and illustrated from Benin. Four of them, R.carmesina, R.hiemisilvae, R.inflata and R.sublaevis, were previously published. Five species, Russulaacrialbida sp. nov., R.beenkenii sp. nov., R.coronata sp. nov., R.florae sp. nov. and R.spectabilis sp. nov., are newly described. Species within this group are characterised by densely reticulated spore ornamentation, but they exhibit considerable variation in field appearance and pileipellis structure. In gallery forests, their basidiomata are ephemeral, small and their basidiospores have prominent ornamentation; while in savannah woodlands, the basidiomata are fleshy, large and basidiospores present low ornamentation. We suggest that these morphological traits may represent evolutionary adaptations to a specific environmental condition. We analysed the species richness, ecological range and distribution of the "Afrovirescentinae" clade globally based on data from the UNITE database, estimating a total diversity of 94 species primarily distributed in sub-Saharan Africa, but also in the Neotropics. Four additional previously described species not detected in Benin were assigned to this clade, based on holotype sequencing. Several species are widely distributed across tropical Africa and do not show specificity regarding their associated plant symbionts.
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Affiliation(s)
- Cathrin Manz
- Mycology Working Group, Goethe University, Biologicum, Max-von-Laue-Str. 13, 60438 Frankfurt am Main, GermanyGoethe UniversityFrankfurt am MainGermany
| | - Mario Amalfi
- Meise Botanic Garden, Meise, Nieuwelaan 38, 1860 Meise, BelgiumBotanic Garden MeiseMeiseBelgium
- Fédération Wallonie-Bruxelles, Service Général de l’Enseignement Universitaire et de la Recherche Scientifique, Rue A.Lavallée 1, 1080 Bruxelles, BelgiumFédération Wallonie-Bruxelles, Service Général de l’Enseignement Universitaire et de la Recherche ScientifiqueBruxellesBelgium
| | - Bart Buyck
- Institut de Systématique, Écologie, Biodiversité (ISYEB), Muséum national d’histoire naturelle, CNRS, Sorbonne Université, EPHE, 57 rue Cuvier, CP 39, 75005 Paris, FranceMuséum national d’histoire naturelle, CNRS, Sorbonne UniversitéParisFrance
| | - Felix Hampe
- Wetzlarer Str. 1, 35510 Butzbach, GermanyUnaffiliatedButzbachGermany
| | - Nourou S. Yorou
- Research Unit Tropical Mycology and Plant-Soil Fungi Interactions, Faculty of Agronomy, University of Parakou, Parakou, BeninUniversity of ParakouParakouBenin
| | - Slavomír Adamčík
- Laboratory of Molecular Ecology and Mycology, Institute of Botany, Plant Science and Biodiversity Center, Slovak Academy of Sciences, Dúbravská cesta 9, 845 23 Bratislava, SlovakiaInstitute of Botany, Plant Science and Biodiversity Center, Slovak Academy of SciencesBratislavaSlovakia
- Department of Botany, Faculty of Natural Sciences, Comenius University in Bratislava, Révová 39, 811 02 Bratislava, SlovakiaComenius University in BratislavaBratislavaSlovakia
| | - Meike Piepenbring
- Mycology Working Group, Goethe University, Biologicum, Max-von-Laue-Str. 13, 60438 Frankfurt am Main, GermanyGoethe UniversityFrankfurt am MainGermany
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13
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Barbosa RN, Felipe MTC, Silva LF, Silva EA, Silva SA, Herculano PN, Prazeres JFSA, Lima JMS, Bezerra JDP, Moreira KA, Magalhães OMC, Souza-Motta CM. A Review of the Biotechnological Potential of Cave Fungi: A Toolbox for the Future. J Fungi (Basel) 2025; 11:145. [PMID: 39997439 PMCID: PMC11856267 DOI: 10.3390/jof11020145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2024] [Revised: 02/09/2025] [Accepted: 02/10/2025] [Indexed: 02/26/2025] Open
Abstract
The study of the intersection between biodiversity and biotechnology has revealed a rich source of innovations. Fungi, with their vast range of morphologies and lifestyles, thrive in various habitats, including caves. With impressive metabolic characteristics, they play a key role in producing essential biotechnological compounds for various economic sectors. This paper aims to consolidate evidence on the biotechnological potential of fungi isolated from caves, highlighting the urgency of conserving and exploring these ecosystems. For this purpose, we conducted a comprehensive literature search using scientific databases (SciELO, Medline Complete, Medline/PubMed, Web of Science, Scopus (Elsevier), and Google Scholar). We adopted an interdisciplinary approach by collecting information from 22 papers published between 2013 and 2024. Based on these data, our survey revealed broad potential, including antimicrobial compounds, antioxidants, antitumor agents, enzymes, and organic acids. We emphasize that accurately identifying and depositing fungal isolates in reference collections are crucial for reliable research and effective industrial applications, driving metabolic bioactivity and the production of substances with the potential to inhibit pathogens. Conserving and protecting the cave environment is imperative, considering its continuous potential for discovery and contribution to scientific advancement.
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Affiliation(s)
- Renan N. Barbosa
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife 50740-600, Pernambuco, Brazil (J.F.S.A.P.); (J.M.S.L.)
| | - Maria Tamara C. Felipe
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife 50740-600, Pernambuco, Brazil (J.F.S.A.P.); (J.M.S.L.)
| | - Leticia F. Silva
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife 50740-600, Pernambuco, Brazil (J.F.S.A.P.); (J.M.S.L.)
| | - Edna A. Silva
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife 50740-600, Pernambuco, Brazil (J.F.S.A.P.); (J.M.S.L.)
- Programa de Pós-Graduação em Biologia de Fungos, Departamento de Micologia, Universidade Federal de Pernambuco, Recife 50670-901, Pernambuco, Brazil
| | - Sabrina A. Silva
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife 50740-600, Pernambuco, Brazil (J.F.S.A.P.); (J.M.S.L.)
- Programa de Pós-Graduação em Biologia de Fungos, Departamento de Micologia, Universidade Federal de Pernambuco, Recife 50670-901, Pernambuco, Brazil
| | - Polyanna N. Herculano
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife 50740-600, Pernambuco, Brazil (J.F.S.A.P.); (J.M.S.L.)
| | - José F. S. A. Prazeres
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife 50740-600, Pernambuco, Brazil (J.F.S.A.P.); (J.M.S.L.)
- Programa de Pós-Graduação em Biologia de Fungos, Departamento de Micologia, Universidade Federal de Pernambuco, Recife 50670-901, Pernambuco, Brazil
| | - Joenny M. S. Lima
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife 50740-600, Pernambuco, Brazil (J.F.S.A.P.); (J.M.S.L.)
| | - Jadson D. P. Bezerra
- Instituto de Patologia Tropical e Saúde Pública, Universidade Federal de Goiás, Goiânia 74605-050, Goiás, Brazil
| | - Keila A. Moreira
- Departamento de Medicina Veterinária, Universidade Federal do Agreste de Pernambuco, Garanhuns 55292-270, Pernambuco, Brazil
| | - Oliane M. C. Magalhães
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife 50740-600, Pernambuco, Brazil (J.F.S.A.P.); (J.M.S.L.)
- Programa de Pós-Graduação em Biologia de Fungos, Departamento de Micologia, Universidade Federal de Pernambuco, Recife 50670-901, Pernambuco, Brazil
| | - Cristina M. Souza-Motta
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife 50740-600, Pernambuco, Brazil (J.F.S.A.P.); (J.M.S.L.)
- Programa de Pós-Graduação em Biologia de Fungos, Departamento de Micologia, Universidade Federal de Pernambuco, Recife 50670-901, Pernambuco, Brazil
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14
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Guo SQ, Norphanphoun C, Hyde KD, Fu SM, Sun JE, Wang XC, Wu JJ, Al-Otibi F, Wang Y. Three novel species and a new record of Pleosporales (Didymellaceae, Roussoellaceae) from China. MycoKeys 2025; 113:295-320. [PMID: 39980720 PMCID: PMC11840433 DOI: 10.3897/mycokeys.113.139934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2024] [Accepted: 01/14/2025] [Indexed: 02/22/2025] Open
Abstract
We are investigating saprobic Ascomycota in Guizhou Province, China. Fungal specimens collected from dead wood were identified based on morphological characteristics and multi-gene phylogenetic analyses of ITS, SSU, LSU, β-tubulin, ef1-α, and rpb2 sequence data. Three novel species, Neoroussoellaguizhouensis, Roussoellaguizhouensis, and Xenodidymellaguizhouensis, are introduced, along with one new geographical record, Xenoroussoellatriseptata. This study contributes to our understanding of the diversity of Ascomycota in Guizhou Province and the classification in Roussoellaceae.
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Affiliation(s)
- Shi-Qi Guo
- Department of Plant Pathology, Agricultural College, Guizhou University, Guiyang, 550025, ChinaGuizhou UniversityGuiyangChina
| | - Chada Norphanphoun
- Department of Plant Pathology, Agricultural College, Guizhou University, Guiyang, 550025, ChinaGuizhou UniversityGuiyangChina
| | - Kevin D. Hyde
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 22452, Riyadh 11495, Saudi ArabiaKing Saud UniversityRiyadhSaudi Arabia
- Centre of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, ThailandMae Fah Luang UniversityChiang RaiThailand
| | - Sha-Min Fu
- Department of Plant Pathology, Agricultural College, Guizhou University, Guiyang, 550025, ChinaGuizhou UniversityGuiyangChina
| | - Jing-E Sun
- Department of Plant Pathology, Agricultural College, Guizhou University, Guiyang, 550025, ChinaGuizhou UniversityGuiyangChina
| | - Xing-Chang Wang
- Department of Plant Pathology, Agricultural College, Guizhou University, Guiyang, 550025, ChinaGuizhou UniversityGuiyangChina
| | - Jiao-Jiao Wu
- Department of Plant Pathology, Agricultural College, Guizhou University, Guiyang, 550025, ChinaGuizhou UniversityGuiyangChina
| | - Fatimah Al-Otibi
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 22452, Riyadh 11495, Saudi ArabiaKing Saud UniversityRiyadhSaudi Arabia
- Centre of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, ThailandMae Fah Luang UniversityChiang RaiThailand
| | - Yong Wang
- Department of Plant Pathology, Agricultural College, Guizhou University, Guiyang, 550025, ChinaGuizhou UniversityGuiyangChina
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15
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Xiao XJ, Liu NG, Ma J, Zhang LJ, Bao DF, Bai S, Al-Otibi F, Hyde KD, Lu YZ. Three new asexual Kirschsteiniothelia species from Guizhou Province, China. MycoKeys 2025; 113:147-168. [PMID: 39936083 PMCID: PMC11811712 DOI: 10.3897/mycokeys.113.139427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2024] [Accepted: 01/08/2025] [Indexed: 02/13/2025] Open
Abstract
During our investigation of saprobic fungi in southwestern China, three micro-hyphomycetous fungi were isolated from dead wood in freshwater and terrestrial habitats in Guizhou Province. Phylogenetic analyses of ITS, LSU, and SSU sequences, performed using Maximum Likelihood and Bayesian Inference methods, confirmed that these isolates belong to Kirschsteiniothelia. Based on distinct morphological characteristics and molecular phylogenetic evidence, we describe three new species: Kirschsteiniotheliaguizhouensis, K.weiningensis, and K.xishuiensis. Furthermore, the effectiveness of three DNA markers for species-level identification within Kirschsteiniothelia was evaluated using Assemble Species by Automatic Partitioning (ASAP) analysis, which identified the ITS nucleotide sequences as the most reliable marker for species differentiation within the genus.
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Affiliation(s)
- Xing-Juan Xiao
- School of Food and Pharmaceutical Engineering, Guizhou Institute of Technology, Guiyang 550025, China
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Ning-Guo Liu
- School of Food and Pharmaceutical Engineering, Guizhou Institute of Technology, Guiyang 550025, China
| | - Jian Ma
- School of Food and Pharmaceutical Engineering, Guizhou Institute of Technology, Guiyang 550025, China
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Li-Juan Zhang
- School of Food and Pharmaceutical Engineering, Guizhou Institute of Technology, Guiyang 550025, China
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Dan-Feng Bao
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Song Bai
- Engineering and Research Center for Southwest Biopharmaceutical Resource of National Education Ministry of China, Guizhou University, Guiyang, 550025, Guizhou Province, China
| | - Fatimah Al-Otibi
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Guizhou Industry Polytechnic College, Guiyang 550008, China
| | - Kevin D. Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Guizhou Industry Polytechnic College, Guiyang 550008, China
| | - Yong-Zhong Lu
- School of Food and Pharmaceutical Engineering, Guizhou Institute of Technology, Guiyang 550025, China
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16
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Wen TT, Qian ZY, Sun L, Cui FJ, Zan XY, Meng LJ, Sun WJ. Fungal β-1, 3-glucanosyltransferases: A comprehensive review on classification, catalytic mechanism and functional role. Int J Biol Macromol 2025; 289:138651. [PMID: 39694372 DOI: 10.1016/j.ijbiomac.2024.138651] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2024] [Revised: 11/24/2024] [Accepted: 12/09/2024] [Indexed: 12/20/2024]
Abstract
β-1,3-Glucans form the major carbohydrate component of fungal cell walls, playing a vital role in cell viability, stress response, virulence, and even healthy functions such as immuno-enhancement. The elongation and branching of β-1,3-glucans is a mystery. More evidence proved the β-1, 3-glucantransferases belonging to GH72 or GH17 family to branch and remodel the synthesized linear β-1, 3-glucan chain by cleaving its internal β-1, 3-linkage and transfer the cleaved fragment to the nonreducing end of another β-1, 3-glucan acceptor. The present review summarized the comprehensive advances of β-1, 3-glucantransferases including their structures such as catalytic and non-catalytic protein domains, catalytic mechanisms and roles in cell wall formation, cell separation and cell viability to provide the references for understanding and guiding the biosynthesis and production regulation of functional β-1, 3-glucans with high-branched or elongated structures.
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Affiliation(s)
- Ting-Ting Wen
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, PR China
| | - Zhuo-Yu Qian
- Guangdong HAID Research Institute, Guangzhou 511400, PR China
| | - Lei Sun
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, PR China
| | - Feng-Jie Cui
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, PR China; Jiangxi Provincial Engineering and Technology Center for Food Additives Bio-production, Dexing 334221, PR China.
| | - Xin-Yi Zan
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, PR China
| | - Li-Juan Meng
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, PR China
| | - Wen-Jing Sun
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, PR China; Jiangxi Provincial Engineering and Technology Center for Food Additives Bio-production, Dexing 334221, PR China.
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17
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Kumar S, Farsana KB, Mufeeda KT, Singh R, Mahadevakumar S. Unveiling Paramyrothecium kamalii (Stachybotryaceae) as a novel foliar fungal pathogen on Matourea azurea in Kerala, India, based on morpho-cultural, pathological and molecular phylogenetic evidences. Arch Microbiol 2025; 207:42. [PMID: 39853494 DOI: 10.1007/s00203-025-04243-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2024] [Accepted: 01/13/2025] [Indexed: 01/26/2025]
Abstract
During recent survey for the investigation of foliar fungi in Kerala, India, a new species of foliicolous hyphomycete, Paramyrothecium kamalii was discovered on living leaves of Matourea azurea (Plantaginaceae) based on morpho-cultural characteristics and multigene (ITS, LSU, cmdA, tub2, and rpb2) phylogenetic analysis; is described, illustrated and discussed. In vitro Pathogenicity tests were performed and confirmed the pathogenic nature of the fungus, thereby fulfilling Koch's postulates. Phylogenetically, P. kamalii forms a distinct clade, closely related to P. verroridum, P. indicum, and P. roridum. However, it differs morphologically by having longer conidiophores and conidia and lacks setae, unlike the closer species. The identification of P. kamalii as a new foliar pathogen provides critical insights for surveillance and effective control measure of this foliar disease of M. azurea in tropical ecosystems.
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Affiliation(s)
- Shambhu Kumar
- Forest Pathology Department, KSCSTE-Kerala Forest Research Institute, Peechi, Thrissur, Kerala, 680653, India.
| | - K B Farsana
- Forest Pathology Department, KSCSTE-Kerala Forest Research Institute, Peechi, Thrissur, Kerala, 680653, India
| | - K T Mufeeda
- Forest Pathology Department, KSCSTE-Kerala Forest Research Institute, Peechi, Thrissur, Kerala, 680653, India
| | - Raghvendra Singh
- Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh, 221005, India
| | - S Mahadevakumar
- Andaman and Nicobar Regional Centre, Botanical Survey of India, Haddo, Port Blair, 744102, India
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18
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Li Q, Haqnawaz M, Niazi AR, Khalid AN. Phylogenetic studies on the genus Candolleomyces (Psathyrellaceae, Basidiomycota) occurring in the bed of the Indus River, Punjab, Pakistan, reveal three new species. MycoKeys 2025; 112:165-182. [PMID: 39867691 PMCID: PMC11758361 DOI: 10.3897/mycokeys.112.141766] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2024] [Accepted: 12/05/2024] [Indexed: 01/28/2025] Open
Abstract
During macrofungal surveys in 2019-2024, several specimens belonging to the family Psathyrellaceae were collected from the bed of the Indus River, Punjab, Pakistan. Phylogenetic analyses, based on ITS, LSU, and tef-1α sequences and morpho-anatomical study, confirmed the novelty and placement of three taxa in the genus Candolleomyces. They are described as Candolleomycescrenatus, C.undulatus, and C.virgatus. For distinguishing characters, C.crenatus has crenate cap margins, small basidiospores, and a marginate base of stipe. Candolleomycesundulatus has parabolic to campanulate, wavy margins, light purplish gray with a light brownish gray center of pileus, and an appendiculate, pendant annulus. Candolleomycesvirgatus has a parabolic to plane, distinct umbo, a virgate surface of pileus, 1-7 tiers, forking lamellae, and longitudinal striation on the surface of the stipe. Currently, Candolleomyces comprises 60 formally recognized species worldwide. However, with the inclusion of these three species, the total number rises to 63. Detailed descriptions, a phylogenetic estimate, morphological comparisons, and illustrations are provided.
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Affiliation(s)
- Qirui Li
- The High Efficacy Application of Natural Medicinal Resources Engineering Centre of Guizhou Province (The Key Laboratory of Optimal Utilization of Natural Medicine Resources), School of Pharmaceutical Sciences, Guizhou Medical University, Guiyang, Guizhou, 550004, China Guizhou Medical University Guizhou China
| | - Muhammad Haqnawaz
- Fungal Biology and Systematics Research Laboratory, Institute of Botany, University of the Punjab, Quaid-e-Azam Campus 54590, Lahore, Pakistan University of the Punjab Lahore Pakistan
| | - Abdul Rehman Niazi
- Fungal Biology and Systematics Research Laboratory, Institute of Botany, University of the Punjab, Quaid-e-Azam Campus 54590, Lahore, Pakistan University of the Punjab Lahore Pakistan
| | - Abdul Nasir Khalid
- Fungal Biology and Systematics Research Laboratory, Institute of Botany, University of the Punjab, Quaid-e-Azam Campus 54590, Lahore, Pakistan University of the Punjab Lahore Pakistan
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19
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Gomdola D, Jeewon R, Gentekaki E, S. Jayawardena R, Hyde KD, Alotibi F, Wang Y. Assigning Xiuguozhangia (genus incertae sedis) to Pseudoberkleasmiaceae (Dothideomycetes, Pleosporomycetidae, Pleosporales) and introducing X.broussonetiae as a novel species. MycoKeys 2024; 111:181-210. [PMID: 39735653 PMCID: PMC11681335 DOI: 10.3897/mycokeys.111.136202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2024] [Accepted: 11/25/2024] [Indexed: 12/31/2024] Open
Abstract
Xiuguozhangia species are dematiaceous hyphomycetes that are characterised by acropleurogenous, dictyoseptate, campanulate or cheiroid, and brown to dark brown conidia that are composed of several layers of cells radiating from a protuberant basal cell, and mostly seen with appendages arising from the apical cells. The genus was introduced based on morphology to accommodate five of the six Piricaudiopsis species that exhibited holoblastic conidial ontogeny. Xiuguozhangia was referred to as Ascomycota genus incertae sedis as it was challenging to resolve its taxonomic placement based solely on the available morphological data (no DNA sequence data was previously available). In this study, we provide DNA sequence data for LSU, ITS, SSU, TEF1, and RPB2 for our isolates, collected from Broussonetiapapyrifera (Moraceae) in northern Thailand. Based on morphology, we classify our isolates as Xiuguozhangia. Since they form a sister lineage to Pseudoberkleasmium, we place Xiuguozhangia in Pseudoberkleasmiaceae (Pleosporales). Within Xiuguozhangia, we establish these two isolates as a new taxon, Xiuguozhangiabroussonetiae, in view of the presence of new conidiogenous cells developing from subtending cells. Xiuguozhangiabroussonetiae differs from the extant species in the genus as it has longer conidiophores that are sometimes branched, comprising numerous septa, and its appendages are mostly untapered (sometimes tapering) towards the tips, a feature not observed in other Xiuguozhangia species. This is the first study to provide DNA sequence data and phylogenetic relationships for Xiuguozhangia. Furthermore, we analysed selected DNA sequence data and provided an updated phylogenetic tree incorporating all families (with representative genera) of Pleosporales.
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Affiliation(s)
- Deecksha Gomdola
- Department of Plant Pathology, College of Agriculture, Guizhou University, Guiyang, Guizhou 550025, China
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Rajesh Jeewon
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Department of Health Sciences, Faculty of Medicine and Health Sciences, University of Mauritius, Réduit 80837, Mauritius
| | - Eleni Gentekaki
- Department of Zoology, College of Science, King Saud University, P.O. Box 22452, Riyadh 11495, Saudi Arabia
| | | | - Kevin D. Hyde
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Department of Health Sciences, Faculty of Medicine and Health Sciences, University of Mauritius, Réduit 80837, Mauritius
| | - Fatimah Alotibi
- Department of Health Sciences, Faculty of Medicine and Health Sciences, University of Mauritius, Réduit 80837, Mauritius
| | - Yong Wang
- Department of Veterinary Medicine, University of Nicosia School of Veterinary Medicine, Cyprus 24005, Cyprus
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20
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Han LS, Liu C, Dai DQ, Promputtha I, Elgorban AM, Al-Rejaie S, Li Q, Wijayawardene NN. Five new species, two new sexual morph reports, and one new geographical record of Apiospora (Amphisphaeriales, Sordariomycetes) isolated from bamboo in Yunnan, China. Front Cell Infect Microbiol 2024; 14:1476066. [PMID: 39720793 PMCID: PMC11668347 DOI: 10.3389/fcimb.2024.1476066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2024] [Accepted: 10/30/2024] [Indexed: 12/26/2024] Open
Abstract
Apiospora is an important genus in the Apiosporaceae family with a worldwide distribution. They exhibit different lifestyles including pathogenic, saprophytic, and endophytic. In this study, we aimed to explore the Apiospora associated with bamboo and collected 14 apiospora-like taxa from the forests of Yunnan Province, China. Morphological and phylogenetic analyses (combined ITS, LSU, tef1-α, and tub2 sequence data) confirmed that these collections belong to Apiospora s. str. and reports five new species (viz., Ap. dehongensis, Ap. jinghongensis, Ap. shangrilaensis, Ap. zhaotongensis, and Ap. zhenxiongensis). New sexual morphs of asexually typified Ap. globose and Ap. guangdongensis species, and a new geographical record of Ap. subglobosa are also reported. The findings of this study not only enhance the diversity of bambusicolous fungi in the region of Yunnan, but also geographical distribution of some known Apiospora species.
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Affiliation(s)
- Li-Su Han
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, China
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
| | - Chao Liu
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, China
| | - Dong-Qin Dai
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, China
| | | | - Abdallah M. Elgorban
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Salim Al-Rejaie
- Department of Pharmacology and Toxicology, College of Pharmacy, King Saud University, Riyadh, Saudi Arabia
| | - Qiang Li
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, China
| | - Nalin N. Wijayawardene
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, China
- Tropical Microbiology Research Foundation, Pannipitiya, Sri Lanka
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21
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Wang XW, Zhou LW. Spatiotemporal Pattern of a Macrofungal Genus Phylloporia ( Basidiomycota) Revealing Its Adaptive Evolution in China. J Fungi (Basel) 2024; 10:780. [PMID: 39590699 PMCID: PMC11595563 DOI: 10.3390/jof10110780] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2024] [Revised: 10/27/2024] [Accepted: 11/08/2024] [Indexed: 11/28/2024] Open
Abstract
The understanding of distribution and the evolutionary scenario is crucial for the utilization and conservation of biological resources; nevertheless, such explorations rarely focus on macrofungi. The current study selects a macrofungal genus, Phylloporia, and explores its spatiotemporal pattern in China. A total of 117 available occurrence records of Phylloporia in China were summarized for the current analyses. Ensemble modeling supports the highly suitable habitat of Phylloporia concentrated in southern, especially southeastern, China, where the ancestor of Phylloporia originated 77.74 million years ago and then dispersed to other parts of China. Benefitting from the available suitable habitats, Phylloporia rapidly diversified after its divergence in Southeast China. Then, the net diversification rate slowed down when the rapidly diversifying species filled available niches in Southeast China and the dispersed species in other parts of China inhabited the less suitable and unsuitable habitats. During adaptive evolution, precipitation, temperature and the host plant are the major environmental variables that shape the spatiotemporal pattern of Phylloporia. In conclusion, the current study reveals the adaptive evolutionary scenario of Phylloporia and provides the first exploration of the spatiotemporal pattern of macrofungi.
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Affiliation(s)
- Xue-Wei Wang
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China;
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Li-Wei Zhou
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China;
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22
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Li M, Li H. Research progress on inhibitors and inhibitory mechanisms of mycotoxin biosynthesis. Mycotoxin Res 2024; 40:483-494. [PMID: 39164466 DOI: 10.1007/s12550-024-00553-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2024] [Revised: 08/06/2024] [Accepted: 08/12/2024] [Indexed: 08/22/2024]
Abstract
Mycotoxins are secondary metabolites produced by fungi with harmful effects such as carcinogenicity, teratogenicity, nephrotoxicity, and hepatotoxicity. They cause widespread contamination of plant products such as crops, food, and feed, posing serious threats to the life and health of human beings and animals. It has been found that many traditionally synthesized and natural compounds are capable of inhibiting the growth of fungi and their secondary metabolite production. Natural compounds have attracted much attention due to their safety, environmental, and health friendly features. In this paper, compounds of plant origin with inhibitory effects on ochratoxins, aflatoxins, Fusarium toxins, and Alternaria toxins, including cinnamaldehyde, citral, magnolol, eugenol, pterostilbene, curcumin, and phenolic acid, are reviewed, and the inhibitory mechanisms of different compounds on the toxin production of fungi are also elucidated, with the aim of providing application references to reduce the contamination of fungal toxins, thus safeguarding the health of human beings and animals.
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Affiliation(s)
- Mengjie Li
- School of Light Industry Science and Engineering, Beijing Technology and Business University, Beijing, 100048, P. R. China
| | - Honghua Li
- School of Light Industry Science and Engineering, Beijing Technology and Business University, Beijing, 100048, P. R. China.
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23
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Tang X, Jeewon R, Jayawardena RS, Gomdola D, Lu YZ, Xu RJ, Alrefaei AF, Alotibi F, Hyde KD, Kang JC. Additions to the genus Kirschsteiniothelia (Dothideomycetes); Three novel species and a new host record, based on morphology and phylogeny. MycoKeys 2024; 110:35-66. [PMID: 39502522 PMCID: PMC11535726 DOI: 10.3897/mycokeys.110.133450] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2024] [Accepted: 10/01/2024] [Indexed: 11/08/2024] Open
Abstract
During a survey of microfungi associated with forest plants, four specimens related to Kirschsteiniothelia were collected from decaying wood in Guizhou, Hainan and Yunnan Provinces, China. Kirschsteiniothelia species have sexual and asexual forms. They are commonly found as saprophytes on decaying wood and have been reported as disease-causing pathogens in humans as well. In this study, we introduce three novel Kirschsteiniothelia species (K.bulbosapicalis, K.dendryphioides and K.longirostrata) and describe a new host record for K.atra, based on morphology and multi-gene phylogenetic analyses of a concatenated ITS, LSU and SSU rDNA sequence data. These taxa produced a dendryphiopsis- or sporidesmium-like asexual morph and detailed descriptions and micromorphological illustrations are provided. Furthermore, we provide a checklist for the accepted Kirschsteiniothelia species, including detailed host information, habitat preferences, molecular data, existing morphological type, country of origin and corresponding references.
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Affiliation(s)
- Xia Tang
- Engineering and Research Center for Southwest Biopharmaceutical Resource of National Education Ministry of China, Guizhou University, Guiyang, 550025, Guizhou Province, China
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand
| | - Rajesh Jeewon
- School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand
| | | | - Deecksha Gomdola
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand
| | - Yong-Zhong Lu
- Department of Health Sciences, Faculty of Medicine and Health Sciences, University of Mauritius, Reduit, Mauritius
| | - Rong-Ju Xu
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand
| | - Abdulwahed Fahad Alrefaei
- School of Food and Pharmaceutical Engineering, Guizhou Institute of Technology, Guiyang, Guizhou Province 550003, China
| | - Fatimah Alotibi
- School of Food and Pharmaceutical Engineering, Guizhou Institute of Technology, Guiyang, Guizhou Province 550003, China
| | - Kevin D. Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand
- School of Food and Pharmaceutical Engineering, Guizhou Institute of Technology, Guiyang, Guizhou Province 550003, China
| | - Ji-Chuan Kang
- Engineering and Research Center for Southwest Biopharmaceutical Resource of National Education Ministry of China, Guizhou University, Guiyang, 550025, Guizhou Province, China
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24
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Suaifan GARY, Shehadeh MB, Darwish R, Alterify M, Abu Jbara W, Abu Jbara F, Zourob M. Magnetic Nanobead Paper-Based Biosensors for Colorimetric Detection of Candida albicans. ACS OMEGA 2024; 9:43005-43015. [PMID: 39464470 PMCID: PMC11500164 DOI: 10.1021/acsomega.4c05941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Revised: 09/09/2024] [Accepted: 09/13/2024] [Indexed: 10/29/2024]
Abstract
Candida albicans (C. albicans) infections pose significant challenges in clinical settings due to their high morbidity and mortality rates in addition to their role in tumor progression. Current diagnostic methods, while effective, often suffer from limitations that hinder a timely intervention. Therefore, there is an urgent need for a simple, sensitive, specific, and low-cost colorimetric biosensor for the rapid detection of C. albicans. This new biosensing platform comprises a gold platform carrying a specific C. albicans peptide substrate conjugated with magnetic nanobeads. Hence, the sensing platform was black, and the operation was based on the proteolytic activity of C. albicans, offering a visual color change to yellow upon cleavage of the conjugated peptide substrates on the magnetic nanobeads. Specificity testing demonstrated the biosensor's ability to distinguish C. albicans from other Candida species and microorganisms, while stability testing confirmed its long-term performance. Clinical testing revealed the biosensor's high sensitivity in detecting C. albicans in both standard cultures and clinically isolated samples with a lower limit of detestation of 3.5 × 103 CFU/mL. Although further validation against conventional and molecular methods is warranted, our colorimetric biosensor holds promise as a rapid (5 min) and cheap (Less than 2 $) point-of-care solution for the early detection of C. albicans infections, facilitating a timely intervention and improving patient outcomes in clinical practice.
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Affiliation(s)
- Ghadeer A. R. Y. Suaifan
- Department
of Pharmaceutical Sciences, School of Pharmacy, The University of Jordan, Amman 11942, Jordan
| | - Mayadah B. Shehadeh
- Department
of Pharmaceutical Sciences, School of Pharmacy, The University of Jordan, Amman 11942, Jordan
| | - Rula Darwish
- Department
of Pharmaceutics and Pharmaceutical Biotechnology, School of Pharmacy, The University of Jordan, Amman 11942, Jordan
| | - Manar Alterify
- Department
of Pharmaceutical Sciences, School of Pharmacy, The University of Jordan, Amman 11942, Jordan
| | - Ward Abu Jbara
- School
of Medicine, The University of Jordan, Amman 11942, Jordan
| | - Fahid Abu Jbara
- School
of Dentistry, The University of Jordan, Amman 11942, Jordan
| | - Mohammed Zourob
- Department
of Pharmaceutical Sciences, School of Pharmacy, The University of Jordan, Amman 11942, Jordan
- Department
of Chemistry, Alfaisal University, Al Takhassusi Rd, Riyadh 11533, Saudi Arabia
- King Faisal
Specialist Hospital and Research Center, Zahrawi Street, Al Maather, Riyadh 12713, Saudi Arabia
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25
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Luo XX, Liao MG, Zhang K, Castañeda-Ruíz RF, Ma J, Xu ZH. Morphological and phylogenetic analyses reveal eight novel species of Pestalotiopsis (Sporocadaceae, Amphisphaeriales) from southern China. MycoKeys 2024; 109:207-238. [PMID: 39421404 PMCID: PMC11484642 DOI: 10.3897/mycokeys.109.131000] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Accepted: 09/20/2024] [Indexed: 10/19/2024] Open
Abstract
Plants play an important role in maintaining the ecological balance of the biosphere, but often suffer from pathogenic fungi during growth. During our continuing mycological surveys of plant pathogens from terrestrial plants in Jiangxi and Yunnan provinces, China, 24 strains of Pestalotiopsis isolated from diseased and healthy tissues of plant leaves represented eight new species, viz. P.alpinicola, P.camelliicola, P.cyclosora, P.eriobotryae, P.gardeniae, P.hederae, P.machiliana and P.mangifericola. Multi-locus (ITS, tef1-α and tub2) phylogenetic analyses were performed using maximum-likelihood and Bayesian inference to reveal their taxonomic placement within Pestalotiopsis. Both molecular phylogenetic analyses and morphological comparisons supported them as eight independent taxa within Pestalotiopsis. Illustrations and descriptions of these eight taxa were provided, in conjunction with comparisons with closely related taxa in the genus. This work highlights the large potential for new fungal species associated with diseased plant leaves.
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Affiliation(s)
- Xing-Xing Luo
- College of Agronomy, Jiangxi Agricultural University, Nanchang, Jiangxi 330045, China
| | - Ming-Gen Liao
- College of Agronomy, Jiangxi Agricultural University, Nanchang, Jiangxi 330045, China
| | - Kai Zhang
- College of Forestry Engineering, Shandong Agriculture and Engineering University, Jinan 250100, China
| | - Rafael F. Castañeda-Ruíz
- Instituto de Investigaciones de Sanidad Vegetal, Calle 110 No. 514 e/5ta B y 5ta F, Playa, La Habana 11600, Cuba
| | - Jian Ma
- College of Agronomy, Jiangxi Agricultural University, Nanchang, Jiangxi 330045, China
| | - Zhao-Huan Xu
- College of Agronomy, Jiangxi Agricultural University, Nanchang, Jiangxi 330045, China
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26
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Siegel N, Henkel TW, Adams S, Cooper J, Aime MC. New Cortinariaceae species associated with Dicymbe, Aldina, and Pakaraimaea in Guyana. Mycologia 2024; 116:848-864. [PMID: 38990778 DOI: 10.1080/00275514.2024.2367399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2024] [Accepted: 06/10/2024] [Indexed: 07/13/2024]
Abstract
Species of the ectomycorrhizal (ECM) family Cortinariaceae (Agaricales, Agaricomycetes, Basidiomycota) have long been considered impoverished or absent from lowland tropical rainforests. Several decades of collecting in forests dominated by ECM trees in South America's Guiana Shield is countering this view, with discovery of numerous Cortinariaceae species. To date, ~12 morphospecies of this family have been found in the central Pakaraima Mountains of Guyana. Here, we describe three of these as new species of Cortinarius and two as new species of Phlegmacium from forests dominated by the ECM tree genera Dicymbe (Fabaceae subfam. Detarioideae), Aldina (Fabaceae subfam. Papilionoideae), and Pakaraimaea (Cistaceae). Macromorphological, micromorphological, habitat, and DNA sequence data are provided for each new species.
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Affiliation(s)
- Noah Siegel
- 32 Prospect Hill Road, Royalston, Massachusetts 01368
| | - Terry W Henkel
- Department of Biological Sciences, California State Polytechnic University, Humboldt, Arcata, California 95521
| | | | - Jerry Cooper
- Manaaki Whenua-Landcare Research, 54 Gerald Street, Lincoln 7608, New Zealand
| | - M Catherine Aime
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana 47907
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Gallone B, Kuyper TW, Nuytinck J. The genus Cortinarius should not (yet) be split. IMA Fungus 2024; 15:24. [PMID: 39138570 PMCID: PMC11321212 DOI: 10.1186/s43008-024-00159-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Accepted: 07/25/2024] [Indexed: 08/15/2024] Open
Abstract
The genus Cortinarius (Agaricales, Basidiomycota) is one of the most species-rich fungal genera, with thousands of species reported. Cortinarius species are important ectomycorrhizal fungi and form associations with many vascular plants globally. Until recently Cortinarius was the single genus of the family Cortinariaceae, despite several attempts to provide a workable, lower-rank hierarchical structure based on subgenera and sections. The first phylogenomic study for this group elevated the old genus Cortinarius to family level and the family was split into ten genera, of which seven were described as new. Here, by careful re-examination of the recently published phylogenomic dataset, we detected extensive gene-tree/species-tree conflicts using both concatenation and multispecies coalescent approaches. Our analyses demonstrate that the Cortinarius phylogeny remains unresolved and the resulting phylogenomic hypotheses suffer from very short and unsupported branches in the backbone. We can confirm monophyly of only four out of ten suggested new genera, leaving uncertain the relationships between each other and the general branching order. Thorough exploration of the tree space demonstrated that the topology on which Cortinarius revised classification relies on does not represent the best phylogenetic hypothesis and should not be used as constrained topology to include additional species. For this reason, we argue that based on available evidence the genus Cortinarius should not (yet) be split. Moreover, considering that phylogenetic uncertainty translates to taxonomic uncertainty, we advise for careful evaluation of phylogenomic datasets before proposing radical taxonomic and nomenclatural changes.
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Affiliation(s)
- Brigida Gallone
- Naturalis Biodiversity Center, Darwinweg 2, 2333 CR, Leiden, The Netherlands.
| | - Thomas W Kuyper
- Naturalis Biodiversity Center, Darwinweg 2, 2333 CR, Leiden, The Netherlands
- Soil Biology Group, Wageningen University, 6700 AA, Wageningen, The Netherlands
| | - Jorinde Nuytinck
- Naturalis Biodiversity Center, Darwinweg 2, 2333 CR, Leiden, The Netherlands
- Research Group Mycology, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000, Ghent, Belgium
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Han XX, Phurbu D, Ma GF, Li YZ, Mei YJ, Liu DM, Lin FC, Zhao RL, Thongklang N, Cao B. A Taxonomic Study of Candolleomyces Specimens from China Revealed Seven New Species. J Fungi (Basel) 2024; 10:499. [PMID: 39057384 PMCID: PMC11277608 DOI: 10.3390/jof10070499] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2024] [Revised: 07/04/2024] [Accepted: 07/16/2024] [Indexed: 07/28/2024] Open
Abstract
Based on phylogenetic analysis, Candolleomyces (Psathyrellaceae, Agaricales) was established with Psathyrella candolleana as the type species. The basidiomes range from small to large and are typically terrestrial, lignicolous, and rarely fimicolous. We analysed the Candolleomyces species collected during five years in China, and based on morphological and molecular data (nrITS, nrLSU, and tef-1α), we propose seven new Candolleomyces species viz. C. brevisporus, C. gyirongicus, C. lignicola, C. luridus, C. shennongdingicus, C. shennongjianus, and C. sichuanicus. Full descriptions, colour photographs, illustrations, phylogenetic analyses results, and comparisons with related Candolleomyces species of the new taxa are provided. This study enriches the species diversity of Candolleomyces in China.
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Affiliation(s)
- Xi-Xi Han
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
| | - Dorji Phurbu
- Tibet Plateau Institute of Biology, Lhasa 850000, China
| | - Guo-Fei Ma
- Shennongjia National Park Administration, Shennongjia 442421, China
- Hubei Provincial Key Laboratory on Conservation Biology of the Shennongjia Golden Snub-Nosed Monkey, Shennongjia 442421, China
| | - You-Zhi Li
- Shennongjia National Park Administration, Shennongjia 442421, China
- Hubei Provincial Key Laboratory on Conservation Biology of the Shennongjia Golden Snub-Nosed Monkey, Shennongjia 442421, China
| | - Yu-Jiao Mei
- Shennongjia National Park Administration, Shennongjia 442421, China
- Hubei Provincial Key Laboratory on Conservation Biology of the Shennongjia Golden Snub-Nosed Monkey, Shennongjia 442421, China
| | - Dong-Mei Liu
- Institue of Ecology, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Fu-Cheng Lin
- State Key Laboratory for Managing Biotic and Chemical Treats to the Quality and Safety of Agro-Products, Institute of Plant Protection and Microbiology, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
- Institute of Digital Agriculture, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
| | - Rui-Lin Zhao
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Naritsada Thongklang
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Bin Cao
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
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Wang D, Deng D, Zhan J, Wu W, Duan C, Sun S, Zhu Z. An Emerging Disease of Chickpea, Basal Stem Rot Caused by Diaporthe aspalathi in China. PLANTS (BASEL, SWITZERLAND) 2024; 13:1950. [PMID: 39065477 PMCID: PMC11280406 DOI: 10.3390/plants13141950] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2024] [Revised: 07/04/2024] [Accepted: 07/11/2024] [Indexed: 07/28/2024]
Abstract
Chickpea (Cicer arietinum L.) is an important legume crop worldwide. An emerging disease, basal stem rot with obvious wilt symptoms, was observed in the upper part of chickpea plants during the disease survey in Qiubei County of Yunnan Province. Three fungal isolates (ZD36-1, ZD36-2, and ZD36-3) were obtained from the diseased tissue of chickpea plants collected from the field. Those isolates were morphologically found to be similar to Diaporthe aspalathi. Molecular sequence analyses of multiple gene regions (ITS, tef1, tub2, cal, and his3) indicated that the three isolates showed a high identity with D. aspalathi. Pathogenicity and host range tests of the isolates were performed on the original host chickpea and eight other legume crops. The isolates were strongly pathogenic to chickpea and appeared highly pathogenic to soybean, cowpea, and mung bean; moderated or mild pathogenic to adzuki bean and common bean; however, the isolates did not cause symptoms on grass pea (Lathyrus sativus). Diaporthe aspalathi was previously reported as a main pathogen causing the southern stem canker in soybean. To our knowledge, this is the first report of D. aspalathi inducing basal stem rot on chickpea worldwide.
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Affiliation(s)
| | | | | | | | | | - Suli Sun
- Key Laboratory of Grain Crop Genetic Resources Evaluation and Utilization, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (D.W.); (D.D.); (J.Z.); (W.W.); (C.D.)
| | - Zhendong Zhu
- Key Laboratory of Grain Crop Genetic Resources Evaluation and Utilization, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (D.W.); (D.D.); (J.Z.); (W.W.); (C.D.)
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Aylward J, Wilson AM, Visagie CM, Spraker J, Barnes I, Buitendag C, Ceriani C, Del Mar Angel L, du Plessis D, Fuchs T, Gasser K, Krämer D, Li W, Munsamy K, Piso A, Price JL, Sonnekus B, Thomas C, van der Nest A, van Dijk A, van Heerden A, van Vuuren N, Yilmaz N, Duong TA, van der Merwe NA, Wingfield MJ, Wingfield BD. IMA Genome - F19 : A genome assembly and annotation guide to empower mycologists, including annotated draft genome sequences of Ceratocystis pirilliformis, Diaporthe australafricana, Fusarium ophioides, Paecilomyces lecythidis, and Sporothrix stenoceras. IMA Fungus 2024; 15:12. [PMID: 38831329 PMCID: PMC11149380 DOI: 10.1186/s43008-024-00142-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/04/2024] [Indexed: 06/05/2024] Open
Abstract
The pace at which Next Generation Sequence data is being produced continues to accelerate as technology improves. As a result, such data are increasingly becoming accessible to biologists outside of the field of bioinformatics. In contrast, access to training in the methods of genome assembly and annotation are not growing at a similar rate. In this issue, we report on a Genome Assembly Workshop for Mycologists that was held at the Forestry and Agricultural Biotechnology Institute (FABI) at the University of Pretoria, South Africa and make available the 12 draft genome sequences emanating from the event. With the aim of making the process of genome assembly and annotation more accessible to biologists, we provide a step-by-step guide to both genome assembly and annotation, intended to encourage and empower mycologists to use genome data in their research.
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Affiliation(s)
- Janneke Aylward
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
- Department of Conservation Ecology and Entomology, Stellenbosch University, Private Bag X1, Matieland, 7602, South Africa
| | - Andi M Wilson
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Cobus M Visagie
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Joseph Spraker
- Hexagon Bio, 1490 O'Brien Dr, Menlo Park, CA, 94025, USA
| | - Irene Barnes
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Carla Buitendag
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Callin Ceriani
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Lina Del Mar Angel
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Deanné du Plessis
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Taygen Fuchs
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Katharina Gasser
- Department of Crop Sciences, University of Natural Resources and Life Sciences (BOKU), Institute of Plant Protection, Konrad Lorenz-Strasse 24, Tulln an Der Donau, 3430, Vienna, Austria
| | - Daniella Krämer
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - WenWen Li
- Department of Plant and Soil Sciences, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Kiara Munsamy
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Anja Piso
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Jenna-Lee Price
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Byron Sonnekus
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Chanel Thomas
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Ariska van der Nest
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Alida van Dijk
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Alishia van Heerden
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Nicole van Vuuren
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Neriman Yilmaz
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Tuan A Duong
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Nicolaas A van der Merwe
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Michael J Wingfield
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Brenda D Wingfield
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa.
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Thambugala KM, Daranagama DA, Tennakoon DS, Jayatunga DPW, Hongsanan S, Xie N. Humans vs. Fungi: An Overview of Fungal Pathogens against Humans. Pathogens 2024; 13:426. [PMID: 38787278 PMCID: PMC11124197 DOI: 10.3390/pathogens13050426] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2024] [Revised: 05/14/2024] [Accepted: 05/15/2024] [Indexed: 05/25/2024] Open
Abstract
Human fungal diseases are infections caused by any fungus that invades human tissues, causing superficial, subcutaneous, or systemic diseases. Fungal infections that enter various human tissues and organs pose a significant threat to millions of individuals with weakened immune systems globally. Over recent decades, the reported cases of invasive fungal infections have increased substantially and research progress in this field has also been rapidly boosted. This review provides a comprehensive list of human fungal pathogens extracted from over 850 recent case reports, and a summary of the relevant disease conditions and their origins. Details of 281 human fungal pathogens belonging to 12 classes and 104 genera in the divisions ascomycota, basidiomycota, entomophthoromycota, and mucoromycota are listed. Among these, Aspergillus stands out as the genus with the greatest potential of infecting humans, comprising 16 species known to infect humans. Additionally, three other genera, Curvularia, Exophiala, and Trichophyton, are recognized as significant genera, each comprising 10 or more known human pathogenic species. A phylogenetic analysis based on partial sequences of the 28S nrRNA gene (LSU) of human fungal pathogens was performed to show their phylogenetic relationships and clarify their taxonomies. In addition, this review summarizes the recent advancements in fungal disease diagnosis and therapeutics.
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Affiliation(s)
- Kasun M. Thambugala
- Genetics and Molecular Biology Unit, Faculty of Applied Sciences, University of Sri Jayewardenepura, Gangodawila, Nugegoda 10250, Sri Lanka; (K.M.T.); (D.P.W.J.)
- Center for Biotechnology, Department of Zoology, University of Sri Jayewardenepura, Nugegoda 10250, Sri Lanka
- Center for Plant Materials and Herbal Products Research, University of Sri Jayewardenepura, Nugegoda 10250, Sri Lanka
| | - Dinushani A. Daranagama
- Department of Plant and Molecular Biology, Faculty of Science, University of Kelaniya, Kelaniya 11300, Sri Lanka;
| | - Danushka S. Tennakoon
- Bioengineering and Technological Research Centre for Edible and Medicinal Fungi, Jiangxi Agricultural University, Nanchang 330045, China;
| | - Dona Pamoda W. Jayatunga
- Genetics and Molecular Biology Unit, Faculty of Applied Sciences, University of Sri Jayewardenepura, Gangodawila, Nugegoda 10250, Sri Lanka; (K.M.T.); (D.P.W.J.)
- Center for Biotechnology, Department of Zoology, University of Sri Jayewardenepura, Nugegoda 10250, Sri Lanka
- Center for Plant Materials and Herbal Products Research, University of Sri Jayewardenepura, Nugegoda 10250, Sri Lanka
| | - Sinang Hongsanan
- Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Science and Oceanography, Shenzhen University, Shenzhen 518060, China
| | - Ning Xie
- Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Science and Oceanography, Shenzhen University, Shenzhen 518060, China
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Xu RF, Karunarathna SC, Phukhamsakda C, Dai DQ, Elgorban AM, Suwannarach N, Kumla J, Wang XY, Tibpromma S. Four new species of Dothideomycetes (Ascomycota) from Pará Rubber ( Heveabrasiliensis) in Yunnan Province, China. MycoKeys 2024; 103:71-95. [PMID: 38560534 PMCID: PMC10980880 DOI: 10.3897/mycokeys.103.117580] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Accepted: 01/29/2024] [Indexed: 04/04/2024] Open
Abstract
The tropical areas in southern and south-western Yunnan are rich in fungal diversity. Additionally, the diversity of seed flora in Yunnan Province is higher than in other regions in China and the abundant endemic species of woody plants provide favourable substrates for fungi. Rubber plantations in Yunnan Province are distributed over a large area, especially in Xishuangbanna. During a survey of rubber-associated fungi in Yunnan Province, China, dead rubber branches with fungal fruiting bodies were collected. Morphological characteristics and multigene phylogenetic analyses (ITS, LSU, SSU, rpb2 and tef1-α) revealed four distinct new species, described herein as Melomastiapuerensis, Nigrogranalincangensis, Pseudochaetosphaeronemalincangensis and Pseudochaetosphaeronemaxishuangbannaensis. Detailed descriptions, illustrations and phylogenetic trees are provided to show the taxonomic placements of these new species.
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Affiliation(s)
- Rui-Fang Xu
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, China
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand
| | - Samantha C. Karunarathna
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, China
- School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand
| | | | - Dong-Qin Dai
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, China
| | | | - Nakarin Suwannarach
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| | - Jaturong Kumla
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| | - Xiao-Yan Wang
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai, Thailand
| | - Saowaluck Tibpromma
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, China
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33
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Shafiq N, Shakoor B, Yaqoob N, Parveen S, Brogi S, Mohammad Salamatullah A, Rashid M, Bourhia M. A virtual insight into mushroom secondary metabolites: 3D-QSAR, docking, pharmacophore-based analysis and molecular modeling to analyze their anti-breast cancer potential. J Biomol Struct Dyn 2024:1-22. [PMID: 38299565 DOI: 10.1080/07391102.2024.2304137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Accepted: 01/03/2024] [Indexed: 02/02/2024]
Abstract
Breast cancer is a major issue of investigation in drug discovery due to its rising frequency and global dominance. Plants are significant natural sources for the development of novel medications and therapies. Medicinal mushrooms have many biological response modifiers and are used for the treatment of many physical illnesses. In this research, a database of 89 macro-molecules with anti-breast cancer activity, which were previously isolated from the mushrooms in literature, has been selected for the three-dimensional quantitative structure-activity relationships (3D-QSAR) studies. The 3D-QSAR model was necessarily used in Pharmacopoeia virtual evaluation of the database to develop novel MCF-7 inhibitors. With the known potential targets of breast cancer, the docking studies were achieved. Using molecular dynamics simulations, the targets' stability with the best-chosen natural product molecule was found. Furthermore, the absorption, distribution, metabolism, excretion, and toxicity of three compounds, resulting after the docking study, were predicted. The compound C1 (Pseudonocardian A) showed the features of effective compounds because it has bioavailability from different coral species and is toxicity-free for the prevention of many dermatological illnesses. C1 is chemically active and possesses charge transfer inside the monomer, as seen by the band gaps of highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) electrons. The reactivity descriptors ionization potential, electron affinity, chemical potential (μ), hardness (η), softness (S), electronegativity (χ), and electrophilicity index (ω) have been estimated using the energies of frontier molecular orbitals (HOMO-LUMO). Additionally, molecular electrostatic potential maps were created to show that the C1 is reactive.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Nusrat Shafiq
- Synthetic and Natural Products Drug Discovery Lab, Department of Chemistry, Government College Women University, Faisalabad, Pakistan
| | - Bushra Shakoor
- Synthetic and Natural Products Drug Discovery Lab, Department of Chemistry, Government College Women University, Faisalabad, Pakistan
| | - Nazia Yaqoob
- Green Chemistry Lab, Department of Chemistry, Government College Women University, Faisalabad, Pakistan
| | - Shagufta Parveen
- Synthetic and Natural Products Drug Discovery Lab, Department of Chemistry, Government College Women University, Faisalabad, Pakistan
| | - Simone Brogi
- Department of Pharmacy, Pisa University, Pisa, Italy
| | - Ahmad Mohammad Salamatullah
- Department of Food Science & Nutrition, College of Food and Agricultural Sciences, King Saud University, Riyadh, Saudi Arabia
| | - Maryam Rashid
- Synthetic and Natural Products Drug Discovery Lab, Department of Chemistry, Government College Women University, Faisalabad, Pakistan
| | - Mohammed Bourhia
- Department of Chemistry and Biochemistry, Faculty of Medicine and Pharmacy, Ibn Zohr University, Laayoune, Morocco
- Laboratory of Chemistry-Biochemistry, Environment, Nutrition, and Health, Faculty of Medicine and Pharmacy, University Hassan II, Casablanca, Morocco
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Rungjindamai N, Jones EBG. Why Are There So Few Basidiomycota and Basal Fungi as Endophytes? A Review. J Fungi (Basel) 2024; 10:67. [PMID: 38248976 PMCID: PMC10820240 DOI: 10.3390/jof10010067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 01/06/2024] [Accepted: 01/11/2024] [Indexed: 01/23/2024] Open
Abstract
A review of selected studies on fungal endophytes confirms the paucity of Basidiomycota and basal fungi, with almost 90% attributed to Ascomycota. Reasons for the low number of Basidiomycota and basal fungi, including the Chytridiomycota, Mucoromycota, and Mortierellomycota, are advanced, including isolation procedure and media, incubation period and the slow growth of basidiomycetes, the identification of non-sporulating isolates, endophyte competition, and fungus-host interactions. We compare the detection of endophytes through culture-dependent methods and culture-independent methods, the role of fungi on senescence of the host plant, and next-generation studies.
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Affiliation(s)
- Nattawut Rungjindamai
- Department of Biology, School of Science, King Mongkut’s Institute of Technology Ladkrabang (KMITL), Chalongkrung Road, Ladkrabang, Bangkok 10520, Thailand
| | - E. B. Gareth Jones
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia;
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35
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da Silva Santos AC, Pedroso SKB, Alves AL, Diniz AG, de Oliveira NT, Tiago PV. Fusarium species associated with citrus blackfly ( Aleurocanthus woglumi) from an agroecological polyculture in Brazil, including an augmented description of F. volatile. Mycologia 2024; 116:92-105. [PMID: 38079330 DOI: 10.1080/00275514.2023.2283944] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Accepted: 11/10/2023] [Indexed: 01/23/2024]
Abstract
The objectives of this study were to report Fusarium species associated with Aleurocanthus woglumi (Hemiptera: Aleyrodidae) collected from citrus leaves from an agroecological polyculture in Brazil, assess sexual reproductive mode of the species with unknown sexual stages, and provide an augmented description of F. volatile, for which we discovered a sexual stage. Nineteen Fusarium isolates were recovered from A. woglumi. These fungi belong to three species complexes, i.e., the F. chlamydosporum species complex (FCSC), the F. fujikuroi species complex (FFSC), and the F. incarnatum-equiseti species complex (FIESC). Based on multilocus phylogenetic analyses, the species were identified as F. annulatum, F. chlamydosporum, F. pernambucanum, F. sulawesiense, F. verticillioides, and F. volatile. Our results suggest that three species whose sexual stages are unknown (F. chlamydosporum, F. sulawesiense, and F. volatile) are also heterothallic. Intraspecific crosses of F. sulawesiense and F. volatile produced protoperithecia, whereas 66.7% of F. volatile crosses produced fertile perithecia. We provide an augmented description of the latter species to include characteristics of its sexual morph and those observed in the asexual morph that had not yet been described for the species. This study highlights the potential of researching insect-associated fungi to increase knowledge about the diversity, taxonomy, and versatility of Fusarium in ecosystems.
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Affiliation(s)
- Ana Carla da Silva Santos
- Departamento de Micologia, Universidade Federal de Pernambuco, Av. Professor Moraes Rego 1235, Cidade Universitária, Recife, 50670901, Brazil
| | - Sheila Karine Belo Pedroso
- Departamento de Micologia, Universidade Federal de Pernambuco, Av. Professor Moraes Rego 1235, Cidade Universitária, Recife, 50670901, Brazil
| | - Amanda Lucia Alves
- Departamento de Micologia, Universidade Federal de Pernambuco, Av. Professor Moraes Rego 1235, Cidade Universitária, Recife, 50670901, Brazil
| | - Athaline Gonçalves Diniz
- Departamento de Micologia, Universidade Federal de Pernambuco, Av. Professor Moraes Rego 1235, Cidade Universitária, Recife, 50670901, Brazil
| | - Neiva Tinti de Oliveira
- Departamento de Micologia, Universidade Federal de Pernambuco, Av. Professor Moraes Rego 1235, Cidade Universitária, Recife, 50670901, Brazil
| | - Patricia Vieira Tiago
- Departamento de Micologia, Universidade Federal de Pernambuco, Av. Professor Moraes Rego 1235, Cidade Universitária, Recife, 50670901, Brazil
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Fachada V, Bandini D, Beja-Pereira A. Two new species of Inocybe from Mediterranean Cistaceae heathlands. Mycologia 2024; 116:1-16. [PMID: 38133903 DOI: 10.1080/00275514.2023.2284557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2023] [Accepted: 08/21/2023] [Indexed: 12/23/2023]
Abstract
This study explored a heathland region in Portugal, and through morphology, biogeography, and multilocus phylogeny, two new species of Inocybaceae are described. The first species, Inocybe iberilepora, belongs to "I. flocculosa group," whereas the second species, Inocybe phaeosquamosa, belongs to a relatively isolated and understudied clade, distantly related to I. furfurea and allies. Both species are tied to a west Mediterranean distribution and ecology, associating with the local Cistaceae ecosystems. By characterizing these new species, our research contributes to the understanding of European Funga and enriches the knowledge of the genus Inocybe on a global scale.
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Affiliation(s)
- Vasco Fachada
- Neuromuscular Research Center, University of Jyväskylä, Jyväskylä, Finland
- Natural History and Science Museum of the University of Porto, University of Porto, Porto, Portugal
| | | | - Albano Beja-Pereira
- Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, University of Porto, 4485-661 Vairão, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, Centro de Investigação em Biodiversidade e Recursos Genéticos, University of Porto, Vairão, Portugal
- Department of Geosciences, Environment and Spatial Plannings (DGAOT), Faculty of Sciences, University of Porto, Porto, Portugal
- Sustainable Agrifood Production Research Centre (Greenuporto), University of Porto, 4485-646 Rua da Agrária 747, Vairão, Portugal
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Jiang Y, Zhang Z, Zhang J, Wang S, Zhang X. Morphological and Phylogenetic Analyses Reveal Three New Species of Phyllosticta ( Botryosphaeriales, Phyllostictaceae) in China. J Fungi (Basel) 2023; 10:7. [PMID: 38248917 PMCID: PMC10816919 DOI: 10.3390/jof10010007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Revised: 12/18/2023] [Accepted: 12/19/2023] [Indexed: 01/23/2024] Open
Abstract
The genus Phyllosticta has been reported worldwide and contains many pathogenic and endophytic species isolated from a wide range of plant hosts. A multipoint phylogeny based on gene coding combinatorial data sets for the internal transcribed spacer (ITS), large subunit of ribosomal RNA (LSU rDNA), translation elongation factor 1α (TEF1α), actin (ACT), and glycerol-3-phosphate dehydrogenase (GPDH), combined with morphological characteristics, was performed. We describe three new species, P. fujianensis sp. nov., P. saprophytica sp. nov., and P. turpiniae sp. nov., and annotate and discusse their similarities and differences in morphological relationships and phylogenetic phases with closely related species.
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Affiliation(s)
- Yang Jiang
- College of Life Sciences, Shandong Normal University, Jinan 250358, China; (Y.J.); (S.W.)
| | - Zhaoxue Zhang
- Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect Pests, College of Plant Protection, Shandong Agricultural University, Taian 271018, China; (Z.Z.); (J.Z.)
| | - Jie Zhang
- Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect Pests, College of Plant Protection, Shandong Agricultural University, Taian 271018, China; (Z.Z.); (J.Z.)
| | - Shi Wang
- College of Life Sciences, Shandong Normal University, Jinan 250358, China; (Y.J.); (S.W.)
| | - Xiuguo Zhang
- College of Life Sciences, Shandong Normal University, Jinan 250358, China; (Y.J.); (S.W.)
- Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect Pests, College of Plant Protection, Shandong Agricultural University, Taian 271018, China; (Z.Z.); (J.Z.)
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Yang KL, Lin JY, Li GM, Yang ZL. Mushrooms Adapted to Seawater: Two New Species of Candolleomyces (Basidiomycota, Agaricales) from China. J Fungi (Basel) 2023; 9:1204. [PMID: 38132805 PMCID: PMC10744817 DOI: 10.3390/jof9121204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Revised: 12/10/2023] [Accepted: 12/13/2023] [Indexed: 12/23/2023] Open
Abstract
Marine fungi have been studied for a long history in many realms, but there are few reports on marine mushrooms. In this study, marine fungi with conspicuous subglobose sequestrate basidioma were discovered from mangrove forests in South China. They grow on the deadwood of mangroves in the intertidal zone, periodically submerging into seawater due to the tide. Some marine animals were observed to nest in their basidiomata or consume them as food. The pileus-gleba-inner veil complex (PGI) of the basidioma was observed to be detached from the stipe and transferred into seawater by external forces, and drifting on sea to spread spores after maturity. The detachment mechanism of their PGIs was revealed through detailed microscopic observations. The contrast culturing experiment using freshwater and seawater potato dextrose agar media showed they have probably obligately adapted to the marine environment. Based on morphological and molecular phylogenetic evidence, two new species of Candolleomyces (Basidiomycota, Agaricales), namely C. brunneovagabundus and C. albovagabundus, were described. They are similar and close to each other, but can be distinguished by the size and color of the basidioma, and the size of the basidiospores.
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Affiliation(s)
- Kun L. Yang
- College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China;
| | - Jia Y. Lin
- College of Plant Protection, South China Agricultural University, Guangzhou 510642, China;
| | - Guang-Mei Li
- Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China;
| | - Zhu L. Yang
- Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China;
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Fu QL, Mo ZQ, Xiang XG, Milne RI, Jacquemyn H, Burgess KS, Sun YN, Yan H, Qiu L, Yang BY, Tan SL. Plastome phylogenomics and morphological traits analyses provide new insights into the phylogenetic position, species delimitation and speciation of Triplostegia (Caprifoliaceae). BMC PLANT BIOLOGY 2023; 23:645. [PMID: 38097946 PMCID: PMC10722739 DOI: 10.1186/s12870-023-04663-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2023] [Accepted: 12/05/2023] [Indexed: 12/17/2023]
Abstract
BACKGROUND The genus Triplostegia contains two recognized species, T. glandulifera and T. grandiflora, but its phylogenetic position and species delimitation remain controversial. In this study, we assembled plastid genomes and nuclear ribosomal DNA (nrDNA) cistrons sampled from 22 wild Triplostegia individuals, each from a separate population, and examined these with 11 recently published Triplostegia plastomes. Morphological traits were measured from herbarium specimens and wild material, and ecological niche models were constructed. RESULTS Triplostegia is a monophyletic genus within the subfamily Dipsacoideae comprising three monophyletic species, T. glandulifera, T. grandiflora, and an unrecognized species Triplostegia sp. A, which occupies much higher altitude than the other two. The new species had previously been misidentified as T. glandulifera, but differs in taproot, leaf, and other characters. Triplotegia is an old genus, with stem age 39.96 Ma, and within it T. glandulifera diverged 7.94 Ma. Triplostegia grandiflora and sp. A diverged 1.05 Ma, perhaps in response to Quaternary climate fluctuations. Niche overlap between Triplostegia species was positively correlated with their phylogenetic relatedness. CONCLUSIONS Our results provide new insights into the species delimitation of Triplostegia, and indicate that a taxonomic revision of Triplostegia is needed. We also identified that either rpoB-trnC or ycf1 could serve as a DNA barcode for Triplostegia.
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Affiliation(s)
- Qing-Li Fu
- Jiangxi Province Key Laboratory of Plant Resources, School of Life Sciences, Nanchang University, Nanchang, Jiangxi, 330031, China
| | - Zhi-Qiong Mo
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, 650201, China
| | - Xiao-Guo Xiang
- Jiangxi Province Key Laboratory of Plant Resources, School of Life Sciences, Nanchang University, Nanchang, Jiangxi, 330031, China
- Jiangxi Province Key Laboratory of Watershed Ecosystem Change and Biodiversity, Institute of Life Science, Nanchang University, Nanchang, Jiangxi, 330031, China
| | - Richard I Milne
- Institute of Molecular Plant Sciences, School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JH, UK
| | - Hans Jacquemyn
- KU Leuven, Department of Biology, Plant Conservation and Population Biology, B-3001, Leuven, Belgium
| | - Kevin S Burgess
- College of Letters and Sciences, Columbus State University, University System of Georgia, Columbus, GA, 31907-5645, USA
| | - Ya-Nan Sun
- Jiangxi Province Key Laboratory of Plant Resources, School of Life Sciences, Nanchang University, Nanchang, Jiangxi, 330031, China
| | - Hua Yan
- Jiangxi Province Key Laboratory of Plant Resources, School of Life Sciences, Nanchang University, Nanchang, Jiangxi, 330031, China
- Jiangxi Province Key Laboratory of Watershed Ecosystem Change and Biodiversity, Institute of Life Science, Nanchang University, Nanchang, Jiangxi, 330031, China
| | - Li Qiu
- Jiangxi Province Key Laboratory of Plant Resources, School of Life Sciences, Nanchang University, Nanchang, Jiangxi, 330031, China
| | - Bo-Yun Yang
- Jiangxi Province Key Laboratory of Plant Resources, School of Life Sciences, Nanchang University, Nanchang, Jiangxi, 330031, China
| | - Shao-Lin Tan
- Jiangxi Province Key Laboratory of Plant Resources, School of Life Sciences, Nanchang University, Nanchang, Jiangxi, 330031, China.
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Hu YF, Liu JW, Luo XX, Xu ZH, Xia JW, Zhang XG, Castañeda-Ruíz RF, Ma J. Multi-locus phylogenetic analyses reveal eight novel species of Distoseptispora from southern China. Microbiol Spectr 2023; 11:e0246823. [PMID: 37905843 PMCID: PMC10715003 DOI: 10.1128/spectrum.02468-23] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Accepted: 09/01/2023] [Indexed: 11/02/2023] Open
Abstract
IMPORTANCE Distoseptispora as a single genus in Distoseptisporaceae was introduced by morphological and phylogenetic analyses. Members of this genus occur mainly as asexual morphs, forming effuse, hairy colonies on decaying wood, plant stems, bamboo culms, and fallen leaves and shafts in terrestrial and freshwater habitats. In the present study, saprobic hyphomycetes from plant debris were investigated, and eight new Distoseptispora species were introduced based on morphology and phylogenetic analyses of LSU, ITS, TEF1, and RPB2 sequence data. This study provides important data on the species diversity, ecological environment, and geographical area of Distoseptispora, greatly updates the classification of Distoseptispora, and improves our understanding of the taxonomy of Distoseptispora.
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Affiliation(s)
- Ya-Fen Hu
- College of Agronomy, Jiangxi Agricultural University, Nanchang, Jiangxi, China
| | - Jing-Wen Liu
- College of Agronomy, Jiangxi Agricultural University, Nanchang, Jiangxi, China
| | - Xing-Xing Luo
- College of Agronomy, Jiangxi Agricultural University, Nanchang, Jiangxi, China
| | - Zhao-Huan Xu
- College of Agronomy, Jiangxi Agricultural University, Nanchang, Jiangxi, China
| | - Ji-Wen Xia
- Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect Pests, College of Plant Protection, Shandong Agricultural University, Taian, Shandong, China
| | - Xiu-Guo Zhang
- Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect Pests, College of Plant Protection, Shandong Agricultural University, Taian, Shandong, China
| | | | - Jian Ma
- College of Agronomy, Jiangxi Agricultural University, Nanchang, Jiangxi, China
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Afshari N, Karimi O, Gomes de Farias AR, Suwannarach N, Bhunjun CS, Zeng XY, Lumyong S. Additions to Diatrypaceae ( Xylariales): Novel Taxa and New Host Associations. J Fungi (Basel) 2023; 9:1151. [PMID: 38132752 PMCID: PMC10744582 DOI: 10.3390/jof9121151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2023] [Revised: 11/17/2023] [Accepted: 11/17/2023] [Indexed: 12/23/2023] Open
Abstract
Diatrypaceae members have a broad distribution and are commonly found on decaying wood. Despite taxonomic and morphological challenges within this group, there has been a growing interest in Diatrypaceae in recent years. The dead branches of several plant hosts with fungal fruiting bodies were collected from Doi Tung National Park, Chiang Rai, and the Narathiwat Provinces in Thailand. Their morphological characteristics, coupled with a molecular phylogeny of combined ITS and tub2 sequence data, were used to introduce two novel Allodiatrype species (A. dalbergiae and A. eleiodoxae) and one new Melanostictus species (M. chiangraiensis). Moreover, four new host records, Diatrypella heveae, D. major, Melanostictus thailandicus, and Paraeutypella citricola on Microcos paniculata, Nayariophyton zizyphifolium, Dalbergia cultrata, and M. paniculata, respectively, as well as a new geographical record of D. major are reported. This research provides detailed descriptions of macro- and microcharacteristics, coupled with a phylogenetic tree for the newly introduced species and host records. The morphological features of Allodiatrype and Melanostictus are listed in the synoptic table.
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Affiliation(s)
- Naghmeh Afshari
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand;
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand; (O.K.); (C.S.B.)
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand;
| | - Omid Karimi
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand; (O.K.); (C.S.B.)
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Antonio R. Gomes de Farias
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand; (O.K.); (C.S.B.)
| | - Nakarin Suwannarach
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand;
| | - Chitrabhanu S. Bhunjun
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand; (O.K.); (C.S.B.)
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Xiang-Yu Zeng
- Department of Plant Pathology, College of Agriculture, Guizhou University, Guiyang 550025, China;
| | - Saisamorn Lumyong
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand;
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand;
- Academy of Science, The Royal Society of Thailand, Bangkok 10300, Thailand
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Zhang JY, Chen ML, Boonmee S, Wang YX, Lu YZ. Four New Endophytic Apiospora Species Isolated from Three Dicranopteris Species in Guizhou, China. J Fungi (Basel) 2023; 9:1096. [PMID: 37998901 PMCID: PMC10672413 DOI: 10.3390/jof9111096] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2023] [Revised: 11/02/2023] [Accepted: 11/09/2023] [Indexed: 11/25/2023] Open
Abstract
Endophytic fungi isolated from medicinal ferns serve as significant natural resources for drug precursors or bioactive metabolites. During our survey on the diversity of endophytic fungi from Dicranopteris species (a genus of medicinal ferns) in Guizhou, Apoiospora was observed as a dominant fungal group. In this study, seven Apiospora strains, representing four new species, were obtained from the healthy plant tissues of three Dicranopteris species-D. ampla, D. linearis, and D. pedata. The four new species, namely Apiospora aseptata, A. dematiacea, A. dicranopteridis, and A. globosa, were described in detail with color photographs and subjected to phylogenetic analyses using combined LSU, ITS, TEF1-α, and TUB2 sequence data. This study also documented three new hosts for Apiospora species.
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Affiliation(s)
- Jing-Yi Zhang
- School of Food and Pharmaceutical Engineering, Guizhou Institute of Technology, Guiyang 550003, China; (J.-Y.Z.); (M.-L.C.); (Y.-X.W.)
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand;
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Meng-Lan Chen
- School of Food and Pharmaceutical Engineering, Guizhou Institute of Technology, Guiyang 550003, China; (J.-Y.Z.); (M.-L.C.); (Y.-X.W.)
| | - Saranyaphat Boonmee
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand;
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Yu-Xuan Wang
- School of Food and Pharmaceutical Engineering, Guizhou Institute of Technology, Guiyang 550003, China; (J.-Y.Z.); (M.-L.C.); (Y.-X.W.)
| | - Yong-Zhong Lu
- School of Food and Pharmaceutical Engineering, Guizhou Institute of Technology, Guiyang 550003, China; (J.-Y.Z.); (M.-L.C.); (Y.-X.W.)
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Lambert C, Schweizer L, Matio Kemkuignou B, Anoumedem EGM, Kouam SF, Marin-Felix Y. Four new endophytic species of Diaporthe (Diaporthaceae, Diaporthales) isolated from Cameroon. MycoKeys 2023; 99:319-362. [PMID: 37915461 PMCID: PMC10616871 DOI: 10.3897/mycokeys.99.110043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Accepted: 09/26/2023] [Indexed: 11/03/2023] Open
Abstract
The genus Diaporthe (Diaporthaceae, Diaporthales) is a large group of fungi frequently reported as phytopathogens, with ubiquitous distribution across the globe. Diaporthe have traditionally been characterized by the morphology of their ana- and teleomorphic state, revealing a high degree of heterogeneity as soon as DNA sequencing was utilized across the different members of the group. Their relevance for biotechnology and agriculture attracts the attention of taxonomists and natural product chemists alike in context of plant protection and exploitation for their potential to produce bioactive secondary metabolites. While more than 1000 species are described to date, Africa, as a natural habitat, has so far been under-sampled. Several endophytic fungi belonging to Diaporthe were isolated from different plant hosts in Cameroon over the course of this study. Phylogenetic analyses based on DNA sequence data of the internal transcribed spacer region and intervening 5.8S nrRNA gene, and partial fragments of the calmodulin, beta-tubulin, histone and the translation elongation factor 1-α genes, demonstrated that these isolates represent four new species, i.e. D.brideliae, D.cameroonensis, D.pseudoanacardii and D.rauvolfiae. Moreover, the description of D.isoberliniae is here emended, now incorporating the morphology of beta and gamma conidia produced by two of our endophytic isolates, which had never been documented in previous records. Moreover, the paraphyletic nature of the genus is discussed and suggestions are made for future revision of the genus.
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Affiliation(s)
- Christopher Lambert
- Department of Microbial Drugs, Helmholtz Centre for Infection Research (HZI) and German Centre for Infection Research (DZIF), Partner Site Hannover/Braunschweig, Inhoffenstrasse 7, 38124 Braunschweig, GermanyDepartment of Microbial Drugs, Helmholtz Centre for Infection Research (HZI) and German Centre for Infection Research (DZIF), Partner Site Hannover/BraunschweigBraunschweigGermany
- Institute of Microbiology, Technische Universität Braunschweig, Spielmannstraße 7, 38106 Braunschweig, GermanyTechnische Universität BraunschweigBraunschweigGermany
- Molecular Cell Biology Group, Helmholtz Centre for Infection Research (HZI), Inhoffenstrasse 7, 38124 Braunschweig, GermanyMolecular Cell Biology Group, Helmholtz Centre for Infection Research (HZI)BraunschweigGermany
| | - Lena Schweizer
- Department of Microbial Drugs, Helmholtz Centre for Infection Research (HZI) and German Centre for Infection Research (DZIF), Partner Site Hannover/Braunschweig, Inhoffenstrasse 7, 38124 Braunschweig, GermanyDepartment of Microbial Drugs, Helmholtz Centre for Infection Research (HZI) and German Centre for Infection Research (DZIF), Partner Site Hannover/BraunschweigBraunschweigGermany
| | - Blondelle Matio Kemkuignou
- Department of Microbial Drugs, Helmholtz Centre for Infection Research (HZI) and German Centre for Infection Research (DZIF), Partner Site Hannover/Braunschweig, Inhoffenstrasse 7, 38124 Braunschweig, GermanyDepartment of Microbial Drugs, Helmholtz Centre for Infection Research (HZI) and German Centre for Infection Research (DZIF), Partner Site Hannover/BraunschweigBraunschweigGermany
- Institute of Microbiology, Technische Universität Braunschweig, Spielmannstraße 7, 38106 Braunschweig, GermanyTechnische Universität BraunschweigBraunschweigGermany
| | - Elodie Gisèle M. Anoumedem
- Department of Chemistry, Higher Teacher Training College, University of Yaoundé I, Yaoundé P.O. Box 47, CameroonUniversity of Yaoundé IYaoundeCameroon
| | - Simeon F. Kouam
- Department of Chemistry, Higher Teacher Training College, University of Yaoundé I, Yaoundé P.O. Box 47, CameroonUniversity of Yaoundé IYaoundeCameroon
| | - Yasmina Marin-Felix
- Department of Microbial Drugs, Helmholtz Centre for Infection Research (HZI) and German Centre for Infection Research (DZIF), Partner Site Hannover/Braunschweig, Inhoffenstrasse 7, 38124 Braunschweig, GermanyDepartment of Microbial Drugs, Helmholtz Centre for Infection Research (HZI) and German Centre for Infection Research (DZIF), Partner Site Hannover/BraunschweigBraunschweigGermany
- Institute of Microbiology, Technische Universität Braunschweig, Spielmannstraße 7, 38106 Braunschweig, GermanyTechnische Universität BraunschweigBraunschweigGermany
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Lu YZ, Liu JK, Chen J, Zeng XY, Kang JC. Editorial: Insights on fungal diversity of ascomycetes and basidiomycetes: taxonomy and interaction with their host. Front Microbiol 2023; 14:1245204. [PMID: 37520370 PMCID: PMC10380910 DOI: 10.3389/fmicb.2023.1245204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Accepted: 07/06/2023] [Indexed: 08/01/2023] Open
Affiliation(s)
- Yong-Zhong Lu
- Engineering and Research Center for Southwest Bio-Pharmaceutical Resources of National Education Ministry of China, Guizhou University, Guiyang, Guizhou, China
- School of Pharmaceutical Engineering, Guizhou Institute of Technology, Guiyang, Guizhou, China
| | - Jian-Kui Liu
- School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, China
| | - Jie Chen
- Unidad Académica de Biotecnología y Agroindustrial, Universidad Politécnica de Huatusco, Huatusco, Mexico
| | - Xiang-Yu Zeng
- Department of Plant Pathology, College of Agriculture, Guizhou University, Guiyang, Guizhou, China
| | - Ji-Chuan Kang
- Engineering and Research Center for Southwest Bio-Pharmaceutical Resources of National Education Ministry of China, Guizhou University, Guiyang, Guizhou, China
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Haqnawaz M, Niazi AR, Khalid AN. A study on the genus Candolleomyces (Agaricales: Psathyrellaceae) from Punjab, Pakistan. BMC Microbiol 2023; 23:181. [PMID: 37434121 DOI: 10.1186/s12866-023-02938-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Accepted: 07/07/2023] [Indexed: 07/13/2023] Open
Abstract
Many basidiomata of the genus Candolleomyces were found on sandy and loamy soil from the Indus Riverbed, Kot Addu District. A phylogenetic study was conducted to examine the occurrence of Candolleomyces sindhudeltae sp. nov. using a combination of ITS and LSU regions. Our morphological, anatomical, and phylogenetic studies indicated the novelty of Candolleomyces sindhudeltae sp. nov. The distinguishing features of C. sindhudeltae are convex to campanulate and areolate pileus with scalloped to cracked cap margins, branched, and pale reddish lamellae, greenish-brown ellipsoid to ovoid basidiospores, polymorphic cheilo, and caulocystidia. The novel taxa formed independent phylogenetic relationships within the genus Candolleomyces. The addition of our new species to the genus Candolleomyces makes us confident that the genus was separated from Psathyrella accurately.
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Affiliation(s)
- Muhammad Haqnawaz
- Fungal Biology and Systematics Research Laboratory, Institute of Botany, University of the Punjab, Quaid-e-Azam Campus 54590, Lahore, Pakistan.
| | - Abdul Rehman Niazi
- Fungal Biology and Systematics Research Laboratory, Institute of Botany, University of the Punjab, Quaid-e-Azam Campus 54590, Lahore, Pakistan
| | - Abdul Nasir Khalid
- Fungal Biology and Systematics Research Laboratory, Institute of Botany, University of the Punjab, Quaid-e-Azam Campus 54590, Lahore, Pakistan
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Tang X, Lu YZ, Dissanayake LS, Goonasekara ID, Jayawardena RS, Xiao YP, Hyde KD, Chen XM, Kang JC. Two new fungal genera ( Diaporthales) found on Dipterocarpaceae in Thailand. Front Microbiol 2023; 14:1169052. [PMID: 37342559 PMCID: PMC10278593 DOI: 10.3389/fmicb.2023.1169052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2023] [Accepted: 05/09/2023] [Indexed: 06/23/2023] Open
Abstract
Diaporthales is a species-rich order of fungi that includes endophytes, saprobes, and pathogens associated with forest plants and crops. They may also occur as parasites or secondary invaders of plant tissues injured or infected by other organisms or inhabit living animal and human tissues, as well as soil. Meanwhile, some severe pathogens wipe out large-scale cultivations of profitable crops, timber monocultures, and forests. Based on morphological and phylogenetic analyses of combined ITS, LSU, tef1-α, and rpb2 sequence data, generated using maximum likelihood (ML), maximum parsimony (MP), and MrBayes (BI), we introduce two new genera of Diaporthales found in Dipterocarpaceae in Thailand, namely Pulvinaticonidioma and Subellipsoidispora. Pulvinaticonidioma is characterized by solitary, subglobose, pycnidial, unilocular conidiomata with the internal layers convex and pulvinate at the base; hyaline, unbranched, septate conidiophores; hyaline, phialidic, cylindrical to ampulliform, determinate conidiogenous cells and hyaline, cylindrical, straight, unicellular, and aseptate conidia with obtuse ends. Subellipsoidispora has clavate to broadly fusoid, short pedicellate asci with an indistinct J- apical ring; biturbinate to subellipsoidal, hyaline to pale brown, smooth, guttulate ascospores that are 1-septate and slightly constricted at the septa. Detailed morphological and phylogenetic comparisons of these two new genera are provided in this study.
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Affiliation(s)
- Xia Tang
- Engineering and Research Center for Southwest Biopharmaceutical Resource of National Education Ministry of China, Guizhou University, Guiyang, Guizhou, China
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, Thailand
| | - Yong-Zhong Lu
- Engineering and Research Center for Southwest Biopharmaceutical Resource of National Education Ministry of China, Guizhou University, Guiyang, Guizhou, China
- School of Food and Pharmaceutical Engineering, Guizhou Institute of Technology, Guiyang, Guizhou, China
| | - Lakmali S. Dissanayake
- Engineering and Research Center for Southwest Biopharmaceutical Resource of National Education Ministry of China, Guizhou University, Guiyang, Guizhou, China
| | - Ishani D. Goonasekara
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand
- International Relations Unit, The Open University of Sri Lanka, Nawala, Nugegoda, Sri Lanka
| | - Ruvishika S. Jayawardena
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, Thailand
| | - Yuan-Pin Xiao
- School of Food and Pharmaceutical Engineering, Guizhou Institute of Technology, Guiyang, Guizhou, China
| | - Kevin D. Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, Thailand
| | - Xue-Mei Chen
- School of Food and Pharmaceutical Engineering, Guizhou Institute of Technology, Guiyang, Guizhou, China
| | - Ji-Chuan Kang
- Engineering and Research Center for Southwest Biopharmaceutical Resource of National Education Ministry of China, Guizhou University, Guiyang, Guizhou, China
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47
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Wang CB, Wang TT, Ma CY, Xue H, Li Y, Piao CG, Jiang N. Phyllosticta rizhaoensis sp. nov. causing leaf blight of Ophiopogon japonicus in China. Fungal Syst Evol 2023; 11:43-50. [PMID: 38516385 PMCID: PMC10956614 DOI: 10.3114/fuse.2023.11.03] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2022] [Accepted: 02/14/2023] [Indexed: 03/23/2024] Open
Abstract
Ophiopogon japonicus (Asparagaceae) is a perennial grass species which can be cultivated as an ornamental and medicinal plant. From April 2021 to September 2022, a serious leaf blight disease of O. japonicus was discovered in Rizhao City, Shandong Province, China. The initial disease symptoms were small yellow spots, finally developing as tip blight, often associated with many small, black, semi-immersed pycnidial conidiomata formed in lesions. To obtain isolates of the causal agent for this disease, samples were randomly collected from O. japonicus diseased leaves in Rizhao City. In total 97 Phyllosticta isolates were obtained from samples, and studied using morphological features and multi-locus phylogenetic analyses of a combined dataset using the internal transcribed spacers (ITS), the 28S large subunit of ribosomal RNA (LSU), and partial translation elongation factor 1-alpha (tef), actin (act) and glyceraldehyde-3-phosphate dehydrogenase (gapdh) loci. Phylogenetically, these Phyllosticta isolates formed a clade in the P. concentrica species complex, and clustered with P. pilospora and P. spinarum. Morphologically, isolates in this clade differed from P. pilospora and P. spinarum by the size of conidiogenous cells and conidia, and the absence of an apical conidial appendage. As a result, these isolates were described as a novel species Phyllosticta rizhaoensis. Pathogenicity was confirmed using Koch's postulates, which showed that P. rizhaoensis could induce leaf blight symptoms on O. japonicus in China. Citation: Wang C-B, Wang T-T, Ma C-Y, Xue H, Li Y, Piao C-G, Jiang N (2023). Phyllosticta rizhaoensis sp. nov. causing leaf blight of Ophiopogon japonicus in China. Fungal Systematics and Evolution 11: 43-50. doi: 10.3114/fuse.2023.11.03.
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Affiliation(s)
- C.-B. Wang
- Key Laboratory of Biodiversity Conservation of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China
| | - T.-T. Wang
- Forestry Protection and Development Service Center of Rizhao City, Rizhao 276800, China
| | - C.-Y. Ma
- Natural Resources and Planning Bureau of Rizhao City, Rizhao 276800, China
| | - H. Xue
- Key Laboratory of Biodiversity Conservation of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China
| | - Y. Li
- Key Laboratory of Biodiversity Conservation of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China
| | - C.-G. Piao
- Key Laboratory of Biodiversity Conservation of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China
| | - N. Jiang
- Key Laboratory of Biodiversity Conservation of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China
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Samaradiwakara NP, de Farias ARG, Tennakoon DS, Aluthmuhandiram JVS, Bhunjun CS, Chethana KWT, Kumla J, Lumyong S. Appendage-Bearing Sordariomycetes from Dipterocarpus alatus Leaf Litter in Thailand. J Fungi (Basel) 2023; 9:625. [PMID: 37367561 DOI: 10.3390/jof9060625] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Revised: 05/25/2023] [Accepted: 05/26/2023] [Indexed: 06/28/2023] Open
Abstract
Leaf litter is an essential functional aspect of forest ecosystems, acting as a source of organic matter, a protective layer in forest soils, and a nurturing habitat for micro- and macro-organisms. Through their successional occurrence, litter-inhabiting microfungi play a key role in litter decomposition and nutrient recycling. Despite their importance in terrestrial ecosystems and their abundance and diversity, information on the taxonomy, diversity, and host preference of these decomposer taxa is scarce. This study aims to clarify the taxonomy and phylogeny of four saprobic fungal taxa inhabiting Dipterocarpus alatus leaf litter. Leaf litter samples were collected from Doi Inthanon National Park in Chiang Mai, northern Thailand. Fungal isolates were characterized based on morphology and molecular phylogeny of the nuclear ribosomal DNA (ITS, LSU) and protein-coding genes (tub2, tef1-α, rpb2). One novel saprobic species, Ciliochorella dipterocarpi, and two new host records, Pestalotiopsis dracontomelon and Robillarda australiana, are introduced. The newly described taxa are compared with similar species, and comprehensive descriptions, micrographs, and phylogenetic trees are provided.
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Affiliation(s)
- Nethmini P Samaradiwakara
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
- Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | | | - Danushka S Tennakoon
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
- Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Janith V S Aluthmuhandiram
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Beijing Key Laboratory of Environment Friendly Management on Fruit Diseases and Pests in North China, Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Chitrabhanu S Bhunjun
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - K W Thilini Chethana
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Jaturong Kumla
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
- Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Saisamorn Lumyong
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
- Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
- Academy of Science, The Royal Society of Thailand, Bangkok 10300, Thailand
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49
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Gao Y, de Farias ARG, Jiang HB, Karunarathna SC, Xu JC, Tibpromma S, Gui H. Morphological and Phylogenetic Characterisations Reveal Four New Species in Leptosphaeriaceae ( Pleosporales, Dothideomycetes). J Fungi (Basel) 2023; 9:612. [PMID: 37367548 PMCID: PMC10299561 DOI: 10.3390/jof9060612] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Revised: 05/22/2023] [Accepted: 05/22/2023] [Indexed: 06/28/2023] Open
Abstract
Leptosphaeriaceae is a widely distributed fungal family with diverse lifestyles. The family includes several genera that can be distinguished by morphology and molecular phylogenetic analysis. During our investigation of saprobic fungi on grasslands in Yunnan Province, China, four fungal taxa belonging to Leptosphaeriaceae associated with grasses were collected. Morphological observations and phylogenetic analyses of the combined SSU, LSU, ITS, tub2, and rpb2 loci based on maximum likelihood and Bayesian inference were used to reveal the taxonomic placement of these fungal taxa. This study introduces four new taxa, viz. Leptosphaeria yunnanensis, L. zhaotongensis, Paraleptosphaeria kunmingensis, and Plenodomus zhaotongensis. Colour photo plates, full descriptions, and a phylogenetic tree to show the placement of the new taxa are provided.
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Affiliation(s)
- Ying Gao
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand; (Y.G.); (A.R.G.d.F.)
- Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe 654400, China; (H.-B.J.); (J.-C.X.)
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
| | | | - Hong-Bo Jiang
- Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe 654400, China; (H.-B.J.); (J.-C.X.)
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
| | - Samantha C. Karunarathna
- National Institute of Fundamental Studies (NIFS), Kandy 20000, Sri Lanka;
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
| | - Jian-Chu Xu
- Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe 654400, China; (H.-B.J.); (J.-C.X.)
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
| | - Saowaluck Tibpromma
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
| | - Heng Gui
- Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe 654400, China; (H.-B.J.); (J.-C.X.)
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
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50
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Bhunjun CS, Phukhamsakda C, Hyde KD, McKenzie EHC, Saxena RK, Li Q. Do all fungi have ancestors with endophytic lifestyles? FUNGAL DIVERS 2023. [DOI: 10.1007/s13225-023-00516-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/18/2023]
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