Chlorophyll fluorescence - A tool to assess photosynthetic performance and stress photophysiology in symbiotic marine invertebrates and seaplants

Trimethylamine-N-oxide enhances drought tolerance in Eucalyptus by increasing photosynthesis

Drought stress significantly reduces agricultural productivity, threatening global food security and timber production. Although trimethylamine-N-oxide (TMAO) has been shown to enhance drought tolerance in plants such as Arabidopsis thaliana and tomato, the physiological and molecular mechanisms by which it regulates drought tolerance in plants remain unclear. In this study, we investigated the physiological and transcriptomic changes in Eucalyptus under drought stress following exogenous TMAO treatment. Physiological analyses showed that TMAO treatment improved the drought resistance of Eucalyptus, and the optimal application concentration was 10 mM. Under drought stress, exogenous TMAO reduced the malondialdehyde content and electrolyte leakage in Eucalyptus leaves, and maintained the stability of the cell membrane. At the same time, TMAO maintained the stability of the photosynthetic electron transport chain and regulates stomatal aperture, which results in a 59% increase in the net photosynthetic efficiency of Eucalyptus under drought. Transcriptomic analysis revealed that TMAO activated pathways for phenylpropanoid biosynthesis, photosynthesis, and carbon metabolism, and influenced the drought resistance of Eucalyptus by regulating the expression of genes such as Phenylalanine ammonia-lyase (PAL), photosystem II reaction center PSB28 protein (Psb28), and FTSH protease 1 (FTSH1), thereby mediating the growth and development of Eucalyptus and its adaptation to adverse conditions. The findings of this study provide an important theoretical basis for using exogenous substances to alleviate plant stress under drought conditions and lay the foundation for exploring the use of exogenous substances in forestry and agriculture.

Study on the effect of the chiral herbicide imazethapyr on flowering initiation in Arabidopsis thaliana

Non-target plants play a key role in maintaining ecological balance and biodiversity. Here, we studied the effect of the chiral herbicide imazethapyr (IM) on the flowering initiation of the non-target plant Arabidopsis thaliana and its underlying mechanism. Plants treated with R-IM initiated flowering earlier than those treated with S-IM. The herbicidally active R-IM had a much greater effect on various phytohormones than S-IM, and this effect increased with the concentration of R-IM. Before flowering, R-IM had a significant effect on the internal levels of 1-aminocyclopropane-1-carboxylic acid (ACC), indole-3-acetic acid (IAA), abscisic acid (ABA), and gibberellic acid (GA3) in Arabidopsis plants, which indicated that it promoted the production of ACC, and high concentrations of R-IM also promoted IAA, ABA, and GA3. R-IM promoted ACC, IAA, and GA3 before and during flowering. High concentrations of R-IM strongly promoted IAA and inhibited GA3, and R-IM inhibited or promoted ACC depending on the concentrations applied. Thus, earlier flowering of Arabidopsis under R-IM treatment may be affected by phytohormone levels throughout the plant, and IAA, ACC, and GA3 likely have significant effects on flowering.

A novel turbidity compensation method for fluorescence spectroscopy and application in the detection of two algae species

Turbidity interference in measurements can reduce the accuracy of fluorescence detection. Conventional turbidity compensation methods directly establish the relationship between turbidity value and fluorescence but cannot accurately characterize the complex interference of turbidity on fluorescence detection. This paper introduces a novel turbidity compensation technique that separates the interference caused by turbidity particles into scattering intensifying and scattering-absorption attenuating components and corrects them separately. First, the scattering spectrum overlapping with fluorescence is estimated and subtracted from the actual sample spectrum to mitigate the fluorescence intensification caused by scattering. Then, attenuation coefficients at different turbidity intervals are calculated to compensate for fluorescence attenuation. Finally, the two components are combined to obtain the final corrected result. Based on the proposed method, the fluorescence spectra data of Platymonas helgolandica var. tsingtaoensis and Synechococcus elongatus undeod is evaluated. The core problem for comper different turbidity interferences were analyzed. Intensifying and attenuating coefficients based on turbidity values and scattering spectra were determined, ensuring adaptability to known and unknown turbidity conditions. The study results show that the fluorescence variation at different concentrations and turbidity levels are influenced by sample concentration and turbidity, exhibiting nonlinear behavior. The compensation model developed was applied to experimental data, achieving a mean relative error of less than 4% and a satisfactory root-mean-square error, significantly enhancing prediction accuracy. This method offers a straightforward and rapid application to detect a wide range of fluorescent substances.

Effect of glutathione reductase on photosystem II characterization and reactive oxygen species metabolism in cotton cytoplasmic male sterile line Jin A

Glutathione reductase (GR) maintains the cellular redox state by reducing oxidized glutathione to glutathione (GSH), which regulates antioxidant defense. Additionally, GR plays an essential role in photosynthesis; however, the mechanism by which GR regulates photosystem II (PSII) is largely unknown. We identified six, three, and three GR genes in Gossypium hirsutum, Gossypium arboreum, and Gossypium raimondii, respectively. We found that GhGR1 and GhGR3 proteins were localized in the chloroplasts, whereas GhGR5 was localized in the cell membrane. Cytoplasmic male sterile (CMS) line Jin A was ideal to explore GR functions because accumulation of reactive oxygen species (ROS) was increased and expression of GhGR was downregulated at the key stage of microspore abortion in anthers compared to maintainer Jin B. The GR activity and relative GhGR1, GhGR3, GhGR5 gene expressions decreased significantly at the key stage of microspore abortion in Jin A-CMS compared to that in Jin B, resulting in an increase in ROS and a decrease in photochemical efficiency in PSII. GhGR1 and GhGR3 overexpression in Arabidopsis decreased ROS levels in anthers and leaves compared to the wild-type. Biochemical analysis of GhGR1 and GhGR3 silencing in Gossypium L. showed that ROS content was increased and photochemical efficiency of PSII was inhibited in leaves. Complementation experiments in tobacco and yeast indicated that GhGR1 interacted with GhPsbX, which was one of the subunits of the PSII protein complex. Taken together, these findings suggest that chloroplast GR plays an important role in PSII and ROS metabolism by interacting with PsbX in cotton plants.

Suppression of MdPRP6 enhances adaptation of apple plants to long-term drought

Apples are one of the world's four most economically significant fruits, and drought stress is an important factor limiting the development of the global apple industry. Here, we demonstrate that a proline-rich protein (PRP), MdPRP6, is an important factor regulating the long-term drought adaptation of apple plants. Suppression of MdPRP6 in apple plants (MdPRP6-Ri) enhances their adaptation to long-term moderate drought conditions, as indicated by their significantly higher biomass and relative water content (RWC) compared with wild-type (WT) plants. Under drought stress, the net photosynthetic rate (Pn), intercellular CO2 concentration (Ci), stomatal conductance (Gs), and transpiration rate (Tr) were higher, and photosystem II (PSII) damage was lower in MdPRP6-Ri plants than in WT plants. Suppression of MdPRP6 increased the activity of antioxidant enzymes, including superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT), which reduced oxidative damage to apple leaves under drought stress. The stomatal openings of MdPRP6-Ri plants were larger than those of WT plants; the WUEI and WUEL were thus higher in MdPRP6-Ri plants than in WT plants under long-term moderate drought stress. We also found that suppression of MdPRP6 increased the wax content of the leaf epidermis, which limits water evaporation caused by non-stomatal factors under drought stress. In sum, our findings suggest that MdPRP6 negatively affects the long-term drought adaptation of apple plants, possibly by modulating both stomatal and non-stomatal water loss.

Heat-Evolved Microalgae (Symbiodiniaceae) Are Stable Symbionts and Influence Thermal Tolerance of the Sea Anemone Exaiptasia diaphana

Symbiotic cnidarians, such as sea anemones and corals, rely on their mutualistic microalgal partners (Symbiodiniaceae) for survival. Marine heatwaves can disrupt this partnership, and it has been proposed that introducing experimentally evolved, heat-tolerant algal symbionts could enhance host thermotolerance. To test this hypothesis, the sea anemone Exaiptasia diaphana (a coral model) was inoculated with either the heterologous wild type or heat-evolved algal symbiont, Cladocopium proliferum, and homologous wild-type Breviolum minutum. The novel symbioses persisted for 1.5 years and determined holobiont thermotolerance during a simulated summer heatwave. Anemones hosting SS8, one of the six heat-evolved strains tested, exhibited the highest thermotolerance. Notably, anemones hosting the wild-type C. proliferum (WT10) were the second most thermally tolerant group, whereas anemones hosting the heat-evolved SS5 or SS9 strains were among the most thermosensitive. Elevated temperatures led to an increase in the levels of many amino acids and a decrease in tricarboxylic acid (TCA) metabolites in all anemone hosts, potentially indicating an increase in autophagy and a reduction in energy and storage production. Some consistent differences were observed in changes in metabolite levels between anemone groups in response to elevated temperature, suggesting that the algal symbiont influenced host metabolome and nutritional budget.

A portable multi-taxa phenotyping device to retrieve physiological performance traits

Organismal phenotyping to identify fitness traits is transforming our understanding of adaptive responses and ecological interactions of species within changing environments. Here we present a portable Multi-Taxa Phenotyping (MTP) system that can retrieve a suite of metabolic and photophysiological parameter across light, temperature, and/or chemical gradients, using real time bio-optical (oxygen and chlorophyll a fluorescence) measurements. The MTP system integrates three well-established technologies for the first time: an imaging Pulse Amplitude Modulated (PAM) chlorophyll a fluorometer, custom-designed well plates equipped with optical oxygen sensors, and a thermocycler. We demonstrate the ability of the MTP system to distinguish phenotypic performance characteristics of diverse aquatic taxa spanning corals, mangroves and algae based on metabolic parameters and Photosystem II dynamics, in a high-throughput capacity and accounting for interactions of different environmental gradients on performance. Extracted metrics from the MTP system can not only provide information on the performance of aquatic taxa exposed to differing environmental gradients, but also provide predicted phenotypic responses of key aquatic organisms to environmental change. Further work validating how rapid phenotyping tools such as the MTP system predict phenotypic responses to long term environmental changes in situ are urgently required to best inform how these tools can support management efforts.

Transcriptome analysis and genome-wide identification of the dehydration-responsive element binding gene family in jackfruit under cold stress

BACKGROUND

Jackfruit (Artocarpus heterophyllus Lam.) is the world's largest and heaviest fruit and adapts to hot, humid tropical climates. Low-temperature injury in winter is a primary abiotic stress, which affects jackfruit growth and development. Therefore, breeding cold-resistant varieties and identifying the vital genes in the process of cold resistance are essential. The dehydration-responsive element binding (DREB) gene family is among the subfamily of the APETALA2/ethylene response factor transcription factor family and is significant in plant abiotic stress responses.

METHODS

In this study, a comparative analysis of the cold resistance property of 'GuangXi' ('GX') and 'Thailand' ('THA') jackfruit strains with different cold resistance characteristics was performed through chlorophyll fluorescence and transcriptome sequencing.

RESULTS

We found that differentially expressed genes (DEGs) are significantly enriched in the metabolic processes. Here, 93 DREB genes were identified in the jackfruit genome, and phylogenetic analysis was used to classify them into seven groups. Gene structure, conserved motifs, chromosomal location, and homologous relationships were used to analyze the structural characteristics of the DREB family. Transcriptomics indicated that most of the AhDREB genes exhibited down-regulated expression in 'THA.' The DEGs AhDREB12, AhDREB21, AhDREB29, and AhDREB34 were selected for quantitative real-time PCR, and the results showed that these genes also had down-regulated expression in 'THA.'

CONCLUSIONS

The above results suggest the significance of the DREB family in improving the cold resistance property of 'GX.'

Assessing key parameters in simultaneous simulation of rapid kinetics of chlorophyll a fluorescence and trans-thylakoid electric potential difference

Our study attempts to address the following questions: among numerous photosynthetic modules, which parameters notably influence the rapid chlorophyll fluorescence (ChlF) rise, the so-called O-J-I-P transient, in conjunction with the P515 signal, as these two records are easily obtained and widely used in photosynthesis research, and how are these parameters ranked in terms of their importance? These questions might be difficult to answer solely through experimental assays. Therefore, we employed an established photosynthesis model. Firstly, we utilized the model to simulate the measured rapid ChlF rise and P515 kinetics simultaneously. Secondly, we employed the sensitivity analysis (SA) tool by randomly altering model parameters to observe their effects on model output variables. Thirdly, we systematically identified significant parameters for both or one of the kinetics across various scenarios. A novel aspect of our study is the application of the Morris method, a global SA tool, to simultaneously assess the significance of model parameters in shaping both or one of the kinetics. The Morris SA technique enables the quantification of how much a specific parameter affects O-J-I-P transient during particular time intervals (e.g., J, I, and P steps). This allowed us to theoretically analyze which step is more significantly influenced by the parameter. In summary, our study contributes to the field by providing a comprehensive analysis of photosynthesis kinetics and emphasizing the importance of parameter selection in modelling this process. These findings can inform future research efforts aimed at improving photosynthesis models and advancing our understanding of photosynthetic processes.

Effects of the supernatant of Chlorella vulgaris cultivated under different culture modes on lettuce (Lactuca sativa L.) growth

CO2 capture by microalgae is a feasible strategy to reduce CO2 emissions. However, large amounts of cell-free supernatant will be produced after microalgal harvesting, which may be harmful to the environment if it is disorderly discharged. In this study, Chlorella vulgaris (C. vulgaris) was cultivated under three common cultivation modes (autotrophic culture (AC), heterotrophic culture (HC) and mixotrophic culture (MC)), and the obtained supernatant was used as fertilizer to investigate its effect on the growth of lettuce. The biomass concentration of C. vulgaris cultivated under MC and HC was 3.25 and 2.59 times that of under AC, respectively. The contents of macronutrients in supernatant obtained from AC were higher than those of MC and HC. However, the contents of amino acids and hormones in supernatant obtained from MC and HC were higher than those of AC. The fresh shoot weight, fresh root weight and root length of lettuce treated with supernatant were significantly higher than that of control treatment. In addition, the contents of chlorophyll, soluble sugar and soluble protein in lettuce treated with supernatant were also higher than that of control treatment. However, the contents of nitrate in lettuce treated with supernatant was lower than that of control treatment. These results showed that the supernatant could promote the growth of lettuce and was a potential of fertilizer for crop planting.

Study on Calibration Method for the Count of Living Algal Cells Detection Based on Variable Fluorescence in Ballast Water

In the monitoring the discharge of ballast water, the count of living algal cells is of utmost significant. Variable fluorescence, denoted as Fv, stands as an optimal parameter for photosynthetic fluorescence, efficiently charactering the living algal cells count, unaffected by the ballast waters' complex background fluorescence environment. This study deeply investigates the quantitative relationship between Fv and the count of living algal cells. Observations indicate that single cell fluorescence yield (abbreviated as SCF) varies significantly across different algae species, leading to considerable errors in quantifying living algal cell count in ballast water with unknown components using the calibration relationship between Fv and the cell count. Thus, correcting SCF prior to calibration becomes necessary. The paper proposes an innovative SCF correction method based on cell cross-sectional area and an eμ factor (where μ is the expected value of the functional absorption cross-section of PSII) This method mitigates the influence of cell size and species differences on quantifying the living algal cell count. Correction operation trials revealed that dividing the SCF measurement by cell cross-sectional area and multiplying by eμ enhanced the correction effect. Comparative experiments demonstrated marked improvement: Relative errors (REs) for Chlorella pyrenoidosa and Chlorella marine, both belonging to the Chlorophyta group, fell from 92.1% and 90.6% to 37.2% and 9.5% respectively post-correction. Similarly, REs for Thalassiosira weissflogii and Nitzschia closterium minutissima, from the Bacillariophyta group, decreased from 74.7% and 68.1% to 14.3% and 19.1% respectively. The RE of Peridinium from the Pyrrophyta group dropped from 28.4% to 12.1%. The results underscore the effectiveness of cell cross-sectional area and eμ in correcting SCF, thus offering a novel correction method for swift and precise measurement of living algal cell count in ballast water, based on variable fluorescence.

Rotation Culture of Macroalgae Based on Photosynthetic Physiological Characteristics of Algae

Seaweed farming has made outstanding contributions to food supply and the restoration of the ecological environment despite the limitations in production and ecological effects due to the current intensive farming of single algae species. These limitations can be overcome by selecting suitable algal species based on their physiological characteristics and by constructing a large-scale seaweed rotation model. This study carried out a trial culture in aquaculture sea areas, and performed in situ monitoring of the environmental conditions and physiological characteristics of Saccharina japonica, Hizikia fusiformis, and Gracilariopsis lemaneiformis. Additionally, a comparative analysis of the three macroalgae at different times was conducted to determine their response characteristics to environmental factors. The results showed that: (1) The three macroalgae had varying light tolerance. The effective quantum yield of Hizikia fusiformis and Gracilariopsis lemaneiformis remained unchanged during the changes in light environment, while that of Saccharina japonica first decreased and then recovered. (2) The relative electron transport rates of the three macroalgae were significantly different under different temperature conditions. Hizikia fusiformis and Saccharina japonica exhibited the highest relative electron transport rates (70.45 and 106.75, respectively) in May (20.3 °C). Notably, Gracilariopsis lemaneiformis demonstrated good growth and exhibited the highest relative electron transport rate (93.07) in September (27.5 °C). These findings collectively support the feasibility of establishing a macroalgae rotation model. Based on the combined environmental conditions of the seas in Shandong, Zhejiang, and Fujian, a macroalgae rotation model was proposed. The application of this model in the construction of artificial seaweed farms in marine ranches can provide a stable output of large-scale seaweed production and ecological benefits.

Screening rate constants in the simulation of rapid kinetics of chlorophyll a fluorescence using the Morris method

Chlorophyll a fluorescence, a sensitive and cost-effective probe, is widely used in photosynthetic research. Its rapid phase, occurring within 1 second under intense illumination, displays complex O-J-I-P transients, providing valuable insights into various aspects of photosynthesis. In addition to employing experimental approaches to measure the rapid Fluorescence Induction (FI) kinetics, mathematical modeling serves as a crucial tool for understanding the underlying mechanisms that drive FI dynamics. However, the significant uncertainty and arbitrary nature of selecting model parameters amplify concerns about the effectiveness of modeling tools in aiding photosynthesis research. Therefore, there is a need to gain a deeper understanding of how these models operate and how arbitrary parameter choices may influence their outcomes. In this study, we employed the Morris method, a global Sensitivity Analysis (SA) tool, to assess the significance of rate constants employed in an existing fluorescence model, particularly those linked to the entire electron transport chain, in shaping the rapid FI dynamics. In summary, utilizing the insights gained from the Morris SA allows for targeted refinement of the photosynthesis model, thereby improving our understanding of the complex processes inherent in photosynthetic systems.

Novel technique for the ultra-sensitive detection of hazardous contaminants using an innovative sensor integrated with a bioreactor

This study introduces an evaluation methodology tailored for bioreactors, with the aim of assessing the stress experienced by algae due to harmful contaminants released from antifouling (AF) paints. We present an online monitoring system equipped with an ultra-sensitive sensor that conducts non-invasive measurements of algal culture's optical density and physiological stage through chlorophyll fluorescence signals. By coupling the ultra-sensitive sensor with flash-induced chlorophyll fluorescence, we examined the dynamic fluorescence changes in the green microalga Chlamydomonas reinhardtii when exposed to biocides. Over a 24-h observation period, increasing concentrations of biocides led to a decrease in photosynthetic activity. Notably, a substantial reduction in the maximum quantum yield of primary photochemistry (FV/FM) was observed within the first hour of exposure. Subsequently, we detected a partial recovery in FV/FM; however, this recovery remained 50% lower than that of the controls. Integrating the advanced submersible sensor with fluorescence decay kinetics offered a comprehensive perspective on the dynamic alterations in algal cells under the exposure to biocides released from antifouling coatings. The analysis of fluorescence relaxation kinetics revealed a significant shortening of the fast and middle phases,  along with an increase in the duration of the slow phase, for the coating with the highest levels of biocides. Combining automated culturing and measuring methods, this approach has demonstrated its effectiveness as an ultrasensitive and non-invasive tool for monitoring the physiology of photosynthetic cultures. This is particularly valuable in the context of studying microalgae and their early responses to various environmental conditions, as well as the potential to develop an AF system with minimal harm to the environment.

Addition of iron does not ameliorate sulfide toxicity by sargassum influx to mangroves but dampens methane and nitrous oxide emissions

Sargassum spp. strandings in the tropical Atlantic harm local ecosystems due to toxic sulfide levels. We conducted a mesocosm experiment to test the efficacy of iron(III) (hydr)oxides in (a) mitigating sulfide toxicity in mangroves resulting from Sargassum and (b) reducing potentially enhanced greenhouse gas emissions. Our results show that iron addition failed to prevent mangrove mortality caused by highly toxic sulfide concentrations, which reached up to 15,000 μmol l-1 in 14 days; timely removal may potentially prevent mangrove death. Sargassum-impacted mesocosms significantly increased methane, nitrous oxide, and carbon dioxide emissions, producing approximately 1 g CO2-equivalents m-2 h-1 during daylight hours, thereby shifting mangroves from sinks to sources of greenhouse gasses. However, iron addition decreased methane emissions by 62 % and nitrous oxide emissions by 57 %. This research reveals that Sargassum strandings have multiple adverse effects related to chemical and ecological dynamics in mangrove ecosystems, including greenhouse gas emissions.

Detection of chlorophyll content based on optical properties of maize leaves

The chlorophyll content reflects plants' photosynthetic capacity, growth stage, and nitrogen status. Maize is one of the three widely planted gain crops in the world. In order to offer useful information for the development of chlorophyll content detectors of maize leaves, a single integrating sphere system was used to measure the transmittance and reflectance spectra of maize leaves over the wavelength range of 500-950 nm. The linear relationships of transmittance and reflectance with chlorophyll content were investigated. The feature wavelengths (FWs) sensitive to chlorophyll content were extracted from the full transmittance and reflectance spectra using the successive projections algorithm (SPA). The partial least squares regression (PLSR) models for predicting the chlorophyll content were established using the full spectra and extracted FWs. The results showed that there were obvious linear relationships between transmittance and reflectance with chlorophyll content of maize leaves and the best linear relationships were found at 709 nm and 714 nm, respectively, with the linear correlation coefficients of 0.801 and 0.696, and the root-mean-squares error (RMSEP) of 0.321 mg·g-1 and 0.405 mg·g-1, respectively. Eight and 6 FWs were extracted from the transmittance and reflectance spectra, respectively. The PLSR model established using the selected FWs from transmittance spectra had better prediction performance with RMSEP of 0.208 mg·g-1 than using full transmittance spectra. The built PLSR models using the full reflectance spectra and extracted FWs had poor robustness. This research offers some theoretical basis for developing a maize leaf chlorophyll content detector based on transmittance or reflectance.

Cytoprotective alginate microcapsule serves as a shield for microalgal encapsulation defensing sulfamethoxazole threats and safeguarding nutrient recovery

Microalgal encapsulation technology is expected to broaden more possibilities for employing microalgae for upgrading conventional biological wastewater treatment. However, only limited and fragmented information is currently available on microalgal encapsulation and pollutant removal. It is ambiguous whether it hold potential for wastewater treatment. Particularly, it remains to be determined whether this technology can provide more possibilities in harsh sewage environments. Here, potential of encapsulated technology to recover nutrients from wastewater was examined, simultaneously compared with commonly adopted suspended system. Results indicate the encapsulated microalgal system showed outstanding advantages in nutrient recovery and defense against antibiotic threats. Moreover, by examining the cellular oxidative stress response and changes of the photosynthetic system, the encapsulated system exhibited potential cytoprotective advantages to microalgal cells for defensing antibiotic threats. Molecular dynamics simulation revealed that the differences among superficial aggregation between the nutrients' ions and molecular sulfamethoxazole on the cross-linked alginate microcapsule surface dominated the nutrient recovery and cytoprotective functions. Ultimately, the molecular nature of pollutants was found to be the most critical aspect for predicting application of this microalgal microcapsule. Cytoprotective systems created with alginate microcapsules can potentially handle more diverse threats with a single type of surface charge in their outermost layer.

Genome-wide identification of GA2ox genes family and analysis of PbrGA2ox1-mediated enhanced chlorophyll accumulation by promoting chloroplast development in pear

BACKGROUND

Chlorophyll (Chl) is an agronomic trait associated with photosynthesis and yield. Gibberellin 2-oxidases (GA2oxs) have previously been shown to be involved in Chl accumulation. However, whether and how the PbrGA2ox proteins (PbrGA2oxs) mediate Chl accumulation in pear (Pyrus spp.) is scarce.

RESULTS

Here, we aimed to elucidate the role of the pear GA2ox gene family in Chl accumulation and the related underlying mechanisms. We isolated 13 PbrGA2ox genes (PbrGA2oxs) from the pear database and identified PbrGA2ox1 as a potential regulator of Chl accumulation. We found that transiently overexpressing PbrGA2ox1 in chlorotic pear leaves led to Chl accumulation, and PbrGA2ox1 silencing in normal pear leaves led to Chl degradation, as evident by the regreening and chlorosis phenomenon, respectively. Meanwhile, PbrGA2ox1-overexpressing (OE) tobacco plants discernably exhibited Chl built-up, as evidenced by significantly higher Pn and Fv/Fm. In addition, RNA sequencing (RNA-seq), physiological and biochemical investigations revealed an increase in abscisic acid (ABA), methyl jasmonate (MeJA), and salicylic acid (SA) concentrations and signaling pathways; a marked elevation in reducing and soluble sugar contents; and a marginal decline in the starch and sucrose levels in OE plants. Interestingly, PbrGA2ox1 overexpression did not prominently affect Chl synthesis. However, it indeed facilitated chloroplast development by increasing chloroplast number per cell and compacting the thylakoid granum stacks. These findings might jointly contribute to Chl accumulation in OE plants.

CONCLUSION

Overall, our results suggested that GA2oxs accelerate Chl accumulation by stimulating chloroplast development and proved the potential of PbrGA2ox1 as a candidate gene for genetically breeding biofortified pear plants with a higher yield.

Deciphering variations in the surficial bacterial compositions and functional profiles in the intersection between North and South Yellow Sea

The coastal ocean systems play paramount role in the nutrient biogeochemistry because of its interconnected environment. To gain a novel insight into coupling relationships between bacterial community, functioning properties and nutrient metabolism, we conducted analysis on the patterns and driving factors of planktonic bacterial functional community across subsurface water of marine ranching near the Yellow Sea in both summer and winter. Illumina HiSeq Sequencing and a corresponding set of biogeochemical data were used to assess distribution patterns of taxa, adaptive mechanism and metabolic function. Results demonstrated that Proteobacteria, Cyanobacteria, Actinobacteriota and Bacteroidota were dominant phyla both in summer and winter. Taxonomic profiles related to nutrient variation were found to be highly correlated with Dissolved Oxygen (DO) and Chlorophyll fluorescence (FLUO), and distinct diversity differences were also found between summer and winter samples. Functional activity in summer associated with the relative abundance of phototrophy and photoautotrophy were the highest in the subsurface water, while in winter the dominant functional properties were mainly include chemoheterotrophy and aerobic_ chemoheterotrophy. A significant difference related to functional activity between summer and winter, mainly representing ligninolysis and iron_respiration. In general, our study provides a framework for understanding the relative importance of environmental factors, temperature variation and nutrient availability in shaping the metabolic processes of aquatic microorganisms, particularly in ocean mariculture systems.

Increased coral biomineralization due to enhanced symbiotic activity upon volcanic ash exposure

Coral reefs, which are among the most productive ecosystems on earth, are in global decline due to rapid climate change. Volcanic activity also results in extreme environmental changes at local to global scales, and may have significant impacts on coral reefs compared to other natural disturbances. During explosive eruptions, large amounts of volcanic ash are generated, significantly disrupting ecosystems close to a volcano, and depositing ash over distal areas (10s - 1000s of km depending on i.a. eruption size and wind direction). Once volcanic ash interacts with seawater, the dissolution of metals leads to a rapid change in the geochemical properties of the seawater column. Here, we report the first known effects of volcanic ash on the physiology and elemental cycling of a symbiotic scleractinian coral under laboratory conditions. Nubbins of the branching coral Stylophora pistillata were reared in aquaria under controlled conditions (insolation, temperature, and pH), while environmental parameters, effective quantum yield, and skeletal growth rate were monitored. Half the aquaria were exposed to volcanic ash every other day for 6 weeks (250 mg L-1 week-1), which induced significant changes in the fluorescence-derived photochemical parameters (ΦPSII, Fv/Fm, NPQ, rETR), directly enhanced the efficiency of symbiont photosynthesis (Pg, Pn), and lead to increased biomineralization rates. Enhancement of symbiont photosynthesis is induced by the supply of essential metals (Fe and Mn), derived from volcanic ash leaching in ambient seawater or within the organism following ingestion. The beneficial role of volcanic ash as an important micronutrient source is supported by the fact that neither photophysiological stress nor signs of lipid peroxidation were detected. Subaerial volcanism affects micronutrient cycling in the coral ecosystem, but the implication for coral ecophysiology on a reef scale remains to be tested. Nevertheless, exposure to volcanic ash can improve coral health and thus influence resilience to external stressors.

Decision tree ensemble with Bayesian optimization to predict the spatial dynamics of chlorophyll-a concentration: A case study in Bay of Bengal

An accurate prediction of the spatial distribution of phytoplankton biomass, as represented by Chlorophyll-a (CHL-a) concentrations, is important for assessing ecological conditions in the marine environment. This study developed a hyperparameter-optimized decision tree-based machine learning (ML) models to predict the geographical distribution of marine phytoplankton CHL-a in the Bay of Bengal. To predict CHL-a over a large spatial extent, satellite-derived remotely sensed data of ocean color features (CHL-a, colored dissolved organic matter, photosynthetically active radiation, particulate organic carbon) and climatic factors (nighttime sea surface temperature, surface absorbed longwave radiation, sea level pressure) from 2003 to 2022 are used to train and test the models. Results obtained from this study have shown the highest concentrations of CHL-a occurred near the Bay's coastal belts and river estuaries. Analysis revealed that aside from photosynthetically active radiation, organic components exhibited a stronger positive relationship with CHL-a than climatic features, which are correlated negatively. Results showed the chosen decision tree methods to all possess higher R2 and lower root mean square error (RMSE) errors. Furthermore, XGBoost outperforms all other models in predicting the geographic distribution of CHL-a. To assess the model efficacy on seasonal basis, a best performing XGBoost model was validated in the Bay of Bengal region which has shown a good performance in predicting the spatial distribution of Chl-a as well as the pixel values during the summer, winter and monsoon seasons. This study provides the best ML model to researchers for predicting CHL-a in the Bay of Bengal. Further it helps to improve our knowledge of CHL-a spatial dynamics and assist in monitoring marine resources in the Bay of Bengal. It worth noting that the water quality in the Indian Ocean is very dynamic in nature, therefore, additional efforts are needed to test the efficacy of this study model over different seasons and spatial gradients.

Chlorophyll a fluorescence as a tool to monitor physiological status in the leaves of Artemisia ordosica under root cutting conditions

Background

Root cutting caused by underground coal mining subsidence is among the leading causes of plant damage in western China. Detection of root cutting stress is of great importance in evaluating the degree of plant damage and changes in physiological conditions in underground coal mining disturbance conditions.

Methods

The present study assessed the use of chlorophyll fluorescence OJIP transient data to evaluate the disturbance characteristics of root cutting stress on leaf photosynthetic mechanisms in the typical shrub Artemisia ordosica Krasch. Different root cutting ratios (10%, 20%, 30%, 50%, 75%, and 100%) were established on the roots of A. ordosica in the field, and the OJIP transient and JIP parameters of the leaves were measured.

Results

The overall OJIP curves and each OJIP step in leaves decreased as the root cutting ratio increased, but the impact was relatively small for root cutting ratios of less than 30%. Through the analysis of JIP parameters and the established energy pipeline model, it was found that the energy capture efficiency and electron transfer efficiency of photosystem II decreased as the root cutting ratio increased. Therefore, we also inferred that the threshold for the plant root cutting ratio at which leaf photosynthetic mechanisms begin to change is 30-50%.

Conclusion

These results indicate that OJIP transient analysis can serve as a non-destructive, rapid technique for detecting plant root cutting stress in coal mining subsidence areas, which is of great value for non-destructive monitoring of plant root damage.

High temperature and eutrophication alter biomass allocation of black mangrove (Avicennia germinans L.) seedlings

Mangrove restoration is underway along tropical coastlines to combat their rapid worldwide decline. However, restoration success is limited due to local drivers such as eutrophication, and global drivers such as climate change, yet their interactions remain unclear. We conducted a mesocosm experiment to assess the impact of increased nutrients and temperature on the photosynthetic efficiency and development of black mangrove seedlings. Seedlings exposed to high temperature and eutrophication showed reduced root growth and disproportionally long stems, with lower net assimilation rates. This architectonical imbalance between root and stem growth may increase susceptibility to physical disturbances and dislodgement. Notably, none of the experimental seedlings displayed signs of photophysiological stress, and those exposed to increased nutrients and temperature exhibited robust photosynthetic performance. The disbalance in biomass allocation highlights the importance of considering local nutrient status and hydrodynamic conditions in restoration projects, ensuring the effective anchorage of mangrove seedlings and restoration success under a warming climate.

Acute Toxicity Assays with Adult Coral Fragments: A Method for Standardization

Coral reefs are globally declining due to various anthropogenic stressors. Amongst those, chemical pollutants, such as pesticides from agricultural runoff, sewage or an overabundance of personal care products in coastal waters due to intense tourism, may be considered as a local stressor for reef-building corals. The extent to which such chemicals exhibit toxic effects towards corals at environmentally relevant concentrations is currently controversially discussed and existing studies are often based on varying and sometimes deficient test methods. To address this uncertainty, we adapted available methods into a reliable and comprehensive acute coral toxicity test method for the reef-building coral Montipora digitata. The toxicities of the four substances benzophenone-3 (BP-3), Diuron (DCMU), copper (Cu2+ as CuCl2, positive control) and dimethylformamide (DMF, solvent) were assessed in a 96 h semi-static test design. Endpoints such as maximum quantum yield, bleaching, tissue loss and mortality were evaluated with respect to their suitability for regulatory purposes. Overall, the endpoints bleaching and mortality yielded sensitive and robust results for the four tested substances. As the test method follows the principles of internationally standardized testing methods (ISO, OECD), it can be considered suitable for further validation and standardization. Once validated, a standardized test method will help to obtain reproducible toxicity results useful for marine hazard and risk assessment and regulatory decision making.

MsCYP71 is a positive regulator for drought resistance in alfalfa

Cytochrome P450 (CYP450) family proteins play key roles in plant growth, development, stress responses, and other physiological processes. Here, we cloned the cytochrome P450 gene MsCYP71 in alfalfa and found that the expression of MsCYP71 was induced by drought stress. Silencing the MsCYP71 gene using virus-induced gene silencing technology significantly decreased the drought resistance of alfalfa, as indicated by their lower relative water content, net photosynthetic rate, and chlorophyll fluorescence maximum (Fm); further, the heterologous overexpression of MsCYP71 in tobacco significantly enhanced the drought resistance and Fm of transgenic tobacco. Furthermore, the expression of MsCYP71 across 45 alfalfa accessions under drought stress was investigated. A significant positive correlation between drought resistance and MsCYP71 expression was observed. The 45 alfalfa accessions were clustered into four groups, and drought resistance, Fm, and MsCYP71 were higher in group I than in the other groups, indicating that group I accessions can be used as candidate germplasm resources for the breeding of drought-resistant alfalfa varieties. Overall, our findings indicated that MsCYP71 is a positive regulator of drought resistance in alfalfa, and its expression can be used to evaluate the drought resistance of alfalfa.

Zostera noltei response to transplantation into historically Hg-contaminated sediments (A mesocosm experiment): Growth, bioaccumulation and photosynthetic performance

The present study aimed to evaluate the effectiveness of seagrass recolonization as a nature-based solution for the recovery of a coastal area historically contaminated by mercury (Laranjo Bay, Ria de Aveiro, Portugal). A mesocosm approach was employed to assess the resistance of Zostera noltei to transplantation into contaminated sediments collected in-situ (0.5-20 mg kg^-1 Hg). At each sampling time (15, 30, 60, 120 and 210 days), the resistance of transplanted Z. noltei was evaluated through growth parameters (biomass and coverage area), photosynthetic performance and elemental composition. Although some significant differences (p ≤ 0.05) were observed between treatments, essentially associated with the elemental composition of plant tissues, the most relevant variations were associated with seasonality. Overall, plants were found to not be affected by sediment contamination, under the tested concentrations, suggesting that recolonization with Z. noltei can be an effective restoration strategy for historically contaminated coastal areas.

Assessing indicators of arsenic toxicity using variable fluorescence in a commercially valuable microalgae: Physiological and toxicological aspects

Indicators signaling Arsenic (As) stress through physiology of microalgae using non-destructive methods like variable fluorescence are rare but requisite. This study reports stress markers indicating arsenic (As) toxicity (in two concentrations 11.25 µg/L and 22.5 µg/L compared to a control) exposed to a microalga (Diacronema lutheri), using fast repetition rate fluorometry (FRRf). Growth and physiological parameters such as cell density, chl a and the maximum quantum yield F_v/F_m showed coherence and impeded after the exponential phase (day 9 - day 12) in As treatments compared to the control (p < 0.05). On contrary photo-physiological constants were elevated showing higher optical (a_LHII) and functional [Sigma (σ_PSII)] absorption cross-section for the As treatments (p < 0.05) further implying the lack of biomass production yet an increase in light absorption. In addition, As exposure increased the energy dissipation by heat (NPQ-NSV) showing a strong relationship with the de-epoxidation ratio (DR) involving photoprotective pigments. Total As bioaccumulation by D. lutheri showed a strong affinity with Fe adsorption throughout the algal growth curve. This study suggests some prompt photo-physiological proxies signaling As contamination and endorsing its usefulness in risk assessments, given the high toxicity and ubiquitous presence of As in the ecosystem.

The exploitation of biofilm by migrant western sandpipers (Calidrismauri)

Assessing the quality of migratory shorebird stopover sites requires good measures of food availability. We developed simple methods to measure biofilm grazing by migrant western sandpipers (Calidris mauri), a species for which biofilm is an important dietary component. We used a field-portable chlorofluorometer to measure the density of chlorophyll-a (Chl-a) in surficial biofilms on Roberts Bank, a large intertidal mudflat in British Columbia, Canada, during northward migration. Chl-a density begins at a low level during each diurnal emersion period, and increases steadily during emersion at 4.1 mg m^-2 h^-1 for a total of ∼24.6 mg m^-2 over a typical 6 h emersion period and ∼41 mg m^-2 over a 10 h emersion period. Western sandpipers grazed at 1.35-1.45 mg Chl-a m^-2 min^-1, thus biofilm production supports 17.6 min m^-2 of grazing time during a 6 h low tide period and 29.3 min m^-2 during a 10 h period. During peak northward migration, the average grazing intensity of western sandpipers over an intertidal emersion period was 3.3-6.4 min m^-2, suggesting that biofilm accumulation was 2.7-8.8 fold greater than the amount consumed. We found Chl-a density was highest (∼65 mg per m²) within 40 m of the shoreline. Grazing intensity was lowest close to shore, where predation risk from falcon attacks is highest. Grazing intensity peaked at 240 m and then declined, lowering Chl-a density at greater distances to a uniform level of ∼54 mg m^-2. These results indicate that interactions between biofilm production and sandpiper grazing underlie spatio-temporal patterns in biofilm abundance on Roberts Bank.

Enhanced degradation of bisphenol A: Influence of optimization of removal, kinetic model studies, application of machine learning and microalgae-bacteria consortia

Bisphenol A (BPA), a typical endocrine disruptor and a contaminant of emerging concern (CECs), has detrimental impacts not only on the environment and ecosystems, but also on human health. Therefore, it is essential to investigate the degrading processes of BPA in order to diminish its persistent effects on ecological environmental safety. With this objective, the present study reports on the effectiveness of biotic/abiotic factors in optimizing BPA removal and evaluates the kinetic models of the biodegradation processes. The results showed that BPA affected chlorophyll a, superoxide dismutase (SOD) and peroxidase (POD) activities, malondialdehyde (MDA) content, and photosystem intrinsic PSII efficiency (Fv/Fm) in the microalga Chlorella pyrenoidosa, which degraded 43.0 % of BPA (8.0 mg L^-1) under general experimental conditions. The bacteria consortium AEF21 could remove 55.4 % of BPA (20 mg L^-1) under orthogonal test optimization (temperature was 32 °C, pH was 8.0, inoculum was 6.0 %) and the prediction of artificial neural network (ANN) of machine learning (R² equal to 0.99 in training, test, and validation phase). The microalgae-bacteria consortia have a high removal rate of 57.5 % of BPA (20.0 mg L^-1). The kinetic study revealed that the removal processes of BPA by microalgae, bacteria, and microalgae-bacteria consortia all followed the Monod's kinetic model. This work provided a new perspective to apply artificial intelligence to predict the degradation of BPA and to understand the kinetic processes of BPA biodegradation by integrated biological approaches, as well as a novel research strategy to achieve environmental CECs elimination for long-term ecosystem health.

Advances in understanding multilevel responses of seagrasses to hypersalinity

Human- and nature-induced hypersaline conditions in coastal systems can lead to profound alterations of the structure and vitality of seagrass meadows and their socio-ecological benefits. In the last two decades, recent research efforts (>50 publications) have contributed significantly to unravel the physiological basis underlying the seagrass-hypersalinity interactions, although most (∼70%) are limited to few species (e.g. Posidonia oceanica, Zostera marina, Thalassia testudinum, Cymodocea nodosa). Variables related to photosynthesis and carbon metabolism are among the most prevalent in the literature, although other key metabolic processes such as plant water relations and responses at molecular (i.e. gene expression) and ultrastructure level are attracting attention. This review emphasises all these latest insights, offering an integrative perspective on the interplay among biological responses across different functional levels (from molecular to clonal structure), and their interaction with biotic/abiotic factors including those related to climate change. Other issues such as the role of salinity in driving the evolutionary trajectory of seagrasses, their acclimation mechanisms to withstand salinity increases or even the adaptive properties of populations that have historically lived under hypersaline conditions are also included. The pivotal role of the costs and limits of phenotypic plasticity in the successful acclimation of marine plants to hypersalinity is also discussed. Finally, some lines of research are proposed to fill the remaining knowledge gaps.

Study on high-CO2 tolerant Dunaliella salina and its mechanism via transcriptomic analysis

Microalgae has been regarded as a promising method for reducing CO2 emission. High CO2 concentration generally inhibits algal growth, and previous studies have mostly focused on breeding freshwater algae with high CO2 tolerance. In this study, one marine algal strain Dunaliella salina (D. salina) was grown under 0.03%-30 % CO2 and 3% NaCl conditions, and was evaluated to determine its potential for CO2 assimilation. The results showed that D. salina could tolerate 30% CO2 , and its maximum biomass concentration could reach 1.13 g·L-1 after 8 days incubation, which was 1.85 times higher than that of incubation in air (0.03%). The phenomenon of high-CO2 tolerance in D. salina culture was discussed basing on transcriptome analysis. The results showed that D. salina was subjected to oxidative stress under 30% CO2 conditions, and the majority genes involving in antioxidant system, such as SOD, CAT, and APX genes were up-regulated to scavenge ROS. In addition, most of the key enzyme genes related to photosynthesis, carbon fixation and metabolism were up-regulated, which are consistent with the higher physiological and biochemical values for D. salina incubation under 30% CO2 .

Rutin Stimulates the Green Alga Chromochloris zofingiensis for Improved Biomass and Astaxanthin Production

Chromochloris zofingiensis represents a potential algal producer of the value-added ketocarotenoid astaxanthin. Here, rutin, a low-cost flavonoid compound, was evaluated regarding its roles in C. zofingiensis production under astaxanthin-inducing conditions via physiological, biochemical, and transcriptomics analyses. The rutin treatment allowed C. zofingiensis to achieve 81.2% more biomass and 20.5% greater astaxanthin content under nitrogen deprivation, leading to more than doubled astaxanthin production. The rutin-treated C. zofingiensis had higher levels of chlorophylls, proteins, and lipids and lower carbohydrate level than the control. Rutin promoted the intracellular abscisic acid (ABA) level, which could be restored by the ABA biosynthesis inhibitor, accompanied by the restoration of biomass concentration and astaxanthin content. The application of exogenous ABA to C. zofingiensis also furthered biomass concentration and astaxanthin accumulation. Together with the comparative transcriptomics analysis, our study provides implications into the involvement of ABA in rutin-mediated stimulation of C. zofingiensis growth and astaxanthin accumulation and highlights a feasible strategy of combining stress and chemical induction for improved microalgal production.

Dissolved organic matter in bovine slaughterhouse wastewater using fluorescence spectroscopy associated with CP/PARAFAC and PCA methods

In this work, we evaluated the potential application of fluorescence spectroscopy, associated with the canonical polyadic/parallel factor analysis and principal component analysis, to monitor the dissolved organic matter (DOM) generated from a slaughterhouse industry. During the monitoring process, we analyzed the residual water at the entrance and exit sites of the slaughterhouse effluent treatment as well as downstream and upstream the effluent receiving water body of a local river. The results revealed that the fluorescence analysis was able to identify proteins, chlorophylls, and humic substances at the entrance and exit sites of the slaughterhouse treatment plant and humic substances at the river water bodies. Our data also demonstrated that the industrial effluent discharged into the river did not impact the receiving water body quality as determined by the biological and humification indices obtained by fluorescence analysis, which was confirmed by conventional physicochemical analysis. In summary, the present findings indicate that fluorescence spectroscopy, in association with multivariate analysis, can be successfully applied as an analytical tool for evaluating the quality of DOM in slaughterhouse wastewater.

Effect of precipitation change on the photosynthetic performance of Phragmites australis under elevated temperature conditions

Background

As a fundamental metabolism, leaf photosynthesis not only provides necessary energy for plant survival and growth but also plays an important role in global carbon fixation. However, photosynthesis is highly susceptible to environmental stresses and can be significantly influenced by future climate change.

Methods

In this study, we examined the photosynthetic responses of Phragmites australis (P. australis) to three precipitation treatments (control, decreased 30%, and increased 30%) under two thermal regimes (ambient temperature and +4 °C) in environment-controlled chambers.

Results

Our results showed that the net CO₂ assimilation rate (P _n), maximal rate of Rubisco (V _cmax), maximal rate of ribulose-bisphosphate (RuBP) regeneration (J _max) and chlorophyll (Chl) content were enhanced under increased precipitation condition, but were declined drastically under the condition of water deficit. The increased precipitation had no significant effect on malondialdehyde (MDA) content (p > 0.05), but water deficit drastically enhanced the MDA content by 10.1%. Meanwhile, a high temperature inhibited the positive effects of increased precipitation, aggravated the adverse effects of drought. The combination of high temperature and water deficit had more detrimental effect on P. australis than a single factor. Moreover, non-stomatal limitation caused by precipitation change played a major role in determining carbon assimilation rate. Under ambient temperature, Chl content had close relationship with P _n (R² = 0.86, p < 0.01). Under high temperature, P _n was ralated to MDA content (R² = 0.81, p < 0.01). High temperature disrupted the balance between V _cmax and J _max (the ratio of J _max to V _cmax decreased from 1.88 to 1.12) which resulted in a negative effect on the photosynthesis of P. australis. Furthermore, by the analysis of Chl fluorescence, we found that the xanthophyll cycle-mediated thermal dissipation played a major role in PSII photoprotection, resulting in no significant change on actual PSII quantum yield (Φ _PSII) under both changing precipitation and high temperature conditions.

Conclusions

Our results highlight the significant role of precipitation change in regulating the photosynthetic performance of P. australis under elevated temperature conditions, which may exacerbate the drought-induced primary productivity reduction of P. australis under future climate scenarios.

Growth performance, antioxidant response, biodegradation and transcriptome analysis of Chlorella pyrenoidosa after nonylphenol exposure

Chlorella pyrenoidosa was exposed to nonylphenol (NP) to investigate the tolerance, antioxidant response, removal efficiency, and biodegradation mechanism. We conducted studies on algal biomass, chlorophyll a content, and photosynthetic activity, and found that C. pyrenoidosa exhibited a high tolerance even at 8 mg L^-1 of NP. Changes in peroxidase (POD) and superoxide dismutase (SOD) activities indicated that the NP-induced oxidative stress caused oxidant damage, which increased the malondialdehyde (MDA) content. After culturing for 120 h, the NP removal efficiency of C. pyrenoidosa was 89%, 59%, 49%, and 48% in the 2, 4, 6, and 8 mg L^-1 treatment groups, respectively. Degradation intermediates determined by GC-MS suggested that the biodegradation of NP in C. pyrenoidosa originated from the long alkyl chain. In addition, transcriptome analysis indicated that NP affected photosynthesis, antioxidase, and oxidoreductase activity-related genes. In summary, our results indicated that C. pyrenoidosa is a species that exhibits high tolerance and biodegradation capacity toward NP.