1
|
Aliaga Fandino AC, Jelínková A, Marhava P, Petrášek J, Hardtke CS. Ectopic assembly of an auxin efflux control machinery shifts developmental trajectories. THE PLANT CELL 2024; 36:1791-1805. [PMID: 38267818 PMCID: PMC11062438 DOI: 10.1093/plcell/koae023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 12/05/2023] [Accepted: 01/18/2024] [Indexed: 01/26/2024]
Abstract
Polar auxin transport in the Arabidopsis (Arabidopsis thaliana) root tip maintains high auxin levels around the stem cell niche that gradually decrease in dividing cells but increase again once they transition toward differentiation. Protophloem differentiates earlier than other proximal tissues and employs a unique auxin "canalization" machinery that is thought to balance auxin efflux with retention. It consists of a proposed activator of PIN-FORMED (PIN) auxin efflux carriers, the cAMP-, cGMP- and Calcium-dependent (AGC) kinase PROTEIN KINASE ASSOCIATED WITH BRX (PAX); its inhibitor, BREVIS RADIX (BRX); and PHOSPHATIDYLINOSITOL-4-PHOSPHATE-5-KINASE (PIP5K) enzymes, which promote polar PAX and BRX localization. Because of a dynamic PAX-BRX-PIP5K interplay, the net cellular output of this machinery remains unclear. In this study, we deciphered the dosage-sensitive regulatory interactions among PAX, BRX, and PIP5K by their ectopic expression in developing xylem vessels. The data suggest that the dominant collective output of the PAX-BRX-PIP5K module is a localized reduction in PIN abundance. This requires PAX-stimulated clathrin-mediated PIN endocytosis upon site-specific phosphorylation, which distinguishes PAX from other AGC kinases. An ectopic assembly of the PAX-BRX-PIP5K module is sufficient to cause cellular auxin retention and affects root growth vigor by accelerating the trajectory of xylem vessel development. Our data thus provide direct evidence that local manipulation of auxin efflux alters the timing of cellular differentiation in the root.
Collapse
Affiliation(s)
| | - Adriana Jelínková
- Institute of Experimental Botany, Czech Academy of Sciences, Prague 165 02, Czech Republic
| | - Petra Marhava
- Department of Plant Molecular Biology, University of Lausanne, Lausanne CH-1015, Switzerland
| | - Jan Petrášek
- Institute of Experimental Botany, Czech Academy of Sciences, Prague 165 02, Czech Republic
| | - Christian S Hardtke
- Department of Plant Molecular Biology, University of Lausanne, Lausanne CH-1015, Switzerland
| |
Collapse
|
2
|
Stuebler M, Manzer ZA, Liu HY, Miller J, Richter A, Krishnan S, Selivanovitch E, Banuna B, Jander G, Reimhult E, Zipfel WR, Roeder AHK, Piñeros MA, Daniel S. Plant Membrane-On-A-Chip: A Platform for Studying Plant Membrane Proteins and Lipids. ACS APPLIED MATERIALS & INTERFACES 2024. [PMID: 38593404 DOI: 10.1021/acsami.3c18562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/11/2024]
Abstract
The cell plasma membrane is a two-dimensional, fluid mosaic material composed of lipids and proteins that create a semipermeable barrier defining the cell from its environment. Compared with soluble proteins, the methodologies for the structural and functional characterization of membrane proteins are challenging. An emerging tool for studies of membrane proteins in mammalian systems is a "plasma membrane on a chip," also known as a supported lipid bilayer. Here, we create the "plant-membrane-on-a-chip,″ a supported bilayer made from the plant plasma membranes of Arabidopsis thaliana, Nicotiana benthamiana, or Zea mays. Membrane vesicles from protoplasts containing transgenic membrane proteins and their native lipids were incorporated into supported membranes in a defined orientation. Membrane vesicles fuse and orient systematically, where the cytoplasmic side of the membrane proteins faces the chip surface and constituents maintain mobility within the membrane plane. We use plant-membrane-on-a-chip to perform fluorescent imaging to examine protein-protein interactions and determine the protein subunit stoichiometry of FLOTILLINs. We report here that like the mammalian FLOTILLINs, FLOTILLINs expressed in Arabidopsis form a tetrameric complex in the plasma membrane. This plant-membrane-on-a-chip approach opens avenues to studies of membrane properties of plants, transport phenomena, biophysical processes, and protein-protein and protein-lipid interactions in a convenient, cell-free platform.
Collapse
Affiliation(s)
- Martin Stuebler
- RF Smith School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, New York 14853, United States
- University of Natural Resources and Life Sciences, Vienna 1180, Austria
| | - Zachary A Manzer
- RF Smith School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, New York 14853, United States
| | - Han-Yuan Liu
- RF Smith School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, New York 14853, United States
| | - Julia Miller
- School of Integrative Plant Science, Cornell University, Ithaca, New York 14853, United States
| | - Annett Richter
- Boyce Thompson Institute, Ithaca, New York 14853, United States
| | | | - Ekaterina Selivanovitch
- RF Smith School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, New York 14853, United States
| | - Barituziga Banuna
- RF Smith School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, New York 14853, United States
| | - Georg Jander
- Boyce Thompson Institute, Ithaca, New York 14853, United States
| | - Erik Reimhult
- University of Natural Resources and Life Sciences, Vienna 1180, Austria
| | - Warren R Zipfel
- Meinig School of Biomedical Engineering, Cornell University, Ithaca, New York 14853, United States
| | - Adrienne H K Roeder
- School of Integrative Plant Science, Cornell University, Ithaca, New York 14853, United States
- Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, New York 14853, United States
| | - Miguel A Piñeros
- School of Integrative Plant Science, Cornell University, Ithaca, New York 14853, United States
- Robert W. Holley Center for Agriculture & Health, ARS-USDA, Ithaca, New York 14853, United States
| | - Susan Daniel
- RF Smith School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, New York 14853, United States
| |
Collapse
|
3
|
Tang H, Lu KJ, Zhang Y, Cheng YL, Tu SL, Friml J. Divergence of trafficking and polarization mechanisms for PIN auxin transporters during land plant evolution. PLANT COMMUNICATIONS 2024; 5:100669. [PMID: 37528584 PMCID: PMC10811345 DOI: 10.1016/j.xplc.2023.100669] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Revised: 07/03/2023] [Accepted: 07/30/2023] [Indexed: 08/03/2023]
Abstract
The phytohormone auxin, and its directional transport through tissues, plays a fundamental role in the development of higher plants. This polar auxin transport predominantly relies on PIN-FORMED (PIN) auxin exporters. Hence, PIN polarization is crucial for development, but its evolution during the rise of morphological complexity in land plants remains unclear. Here, we performed a cross-species investigation by observing the trafficking and localization of endogenous and exogenous PINs in two bryophytes, Physcomitrium patens and Marchantia polymorpha, and in the flowering plant Arabidopsis thaliana. We confirmed that the GFP fusion did not compromise the auxin export function of all examined PINs by using a radioactive auxin export assay and by observing the phenotypic changes in transgenic bryophytes. Endogenous PINs polarize to filamentous apices, while exogenous Arabidopsis PINs distribute symmetrically on the membrane in both bryophytes. In the Arabidopsis root epidermis, bryophytic PINs have no defined polarity. Pharmacological interference revealed a strong cytoskeletal dependence of bryophytic but not Arabidopsis PIN polarization. The divergence of PIN polarization and trafficking is also observed within the bryophyte clade and between tissues of individual species. These results collectively reveal the divergence of PIN trafficking and polarity mechanisms throughout land plant evolution and the co-evolution of PIN sequence-based and cell-based polarity mechanisms.
Collapse
Affiliation(s)
- Han Tang
- Institute of Science and Technology Austria (ISTA), Am Campus 1, 3400 Klosterneuburg, Austria
| | - Kuan-Ju Lu
- Graduate Institute of Biotechnology, National Chung Hsing University, No. 145, Xingda Rd., South Dist., Taichung 40227, Taiwan, R.O.C
| | - YuZhou Zhang
- College of Life Sciences, Northwest A&F University, Shaanxi, Yangling, China
| | - You-Liang Cheng
- Institute of Plant and Microbial Biology, Academia Sinica, 128 Sec. 2, Academia Rd, Nankang, Taipei 11529, Taiwan, R.O.C
| | - Shih-Long Tu
- Institute of Plant and Microbial Biology, Academia Sinica, 128 Sec. 2, Academia Rd, Nankang, Taipei 11529, Taiwan, R.O.C
| | - Jiří Friml
- Institute of Science and Technology Austria (ISTA), Am Campus 1, 3400 Klosterneuburg, Austria.
| |
Collapse
|
4
|
Konstantinova N, Mor E, Verhelst E, Nolf J, Vereecken K, Wang F, Van Damme D, De Rybel B, Glanc M. A precise balance of TETRASPANIN1/TORNADO2 activity is required for vascular proliferation and ground tissue patterning in Arabidopsis. PHYSIOLOGIA PLANTARUM 2024; 176:e14182. [PMID: 38618986 DOI: 10.1111/ppl.14182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 01/04/2024] [Accepted: 01/10/2024] [Indexed: 04/16/2024]
Abstract
The molecular mechanisms guiding oriented cell divisions in the root vascular tissues of Arabidopsis thaliana are still poorly characterised. By overlapping bulk and single-cell transcriptomic datasets, we unveiled TETRASPANIN1 (TET1) as a putative regulator in this process. TET1 is expressed in root vascular cells, and loss-of-function mutants contain fewer vascular cell files. We further generated and characterised a CRISPR deletion mutant and showed, unlike previously described mutants, that the full knock out is additionally missing endodermal cells in a stochastic way. Finally, we show that HA-tagged versions of TET1 are functional in contrast to fluorescent TET1 translational fusions. Immunostaining using HA-TET1 lines complementing the mutant phenotype suggested a dual plasma membrane and intracellular localisation in the root vasculature and a polar membrane localisation in the young cortex, endodermal and initial cells. Taken together, we show that TET1 is involved in both vascular proliferation and ground tissue patterning. Our initial results pave the way for future work to decipher its precise mode of action.
Collapse
Affiliation(s)
- Nataliia Konstantinova
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Centre for Plant Systems Biology, Ghent, Belgium
| | - Eliana Mor
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Centre for Plant Systems Biology, Ghent, Belgium
| | - Eline Verhelst
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Centre for Plant Systems Biology, Ghent, Belgium
| | - Jonah Nolf
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Centre for Plant Systems Biology, Ghent, Belgium
| | - Kenzo Vereecken
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Centre for Plant Systems Biology, Ghent, Belgium
| | - Feng Wang
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Centre for Plant Systems Biology, Ghent, Belgium
| | - Daniel Van Damme
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Centre for Plant Systems Biology, Ghent, Belgium
| | - Bert De Rybel
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Centre for Plant Systems Biology, Ghent, Belgium
| | - Matouš Glanc
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Centre for Plant Systems Biology, Ghent, Belgium
| |
Collapse
|
5
|
Ran J, Ding Q, Shen Y, Gao Z, Wang G, Gao Y, Ma X, Hou X. Construction of an Efficient Genetic Transformation System for Watercress ( Nasturtium officinale W. T. Aiton). PLANTS (BASEL, SWITZERLAND) 2023; 12:4149. [PMID: 38140475 PMCID: PMC10747978 DOI: 10.3390/plants12244149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2023] [Revised: 12/07/2023] [Accepted: 12/07/2023] [Indexed: 12/24/2023]
Abstract
Based on the established efficient regeneration system for watercress in our laboratory, we optimized the processes of pretreatment, co-culture, and differentiation culture. Through GFP fluorescence and PCR identification, we successfully obtained transgenic watercress with the DR5 gene, which allowed us to investigate the distribution details of auxin in the growth process of watercress. Our findings provide an effective method for gene function research and lay the foundation for innovative utilization of germplasm resources of watercress.
Collapse
Affiliation(s)
| | | | | | | | | | | | | | - Xilin Hou
- State Key Laboratory of Crop Genetics & Germplasm Enhancement, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (East China), Ministry of Agriculture and Rural Affairs of China, Engineering Research Center of Germplasm Enhancement and Utilization of Horticultural Crops, Ministry of Education of China, Nanjing Agricultural University, Nanjing 210095, China; (J.R.); (Q.D.); (Y.S.); (Z.G.); (G.W.); (Y.G.); (X.M.)
| |
Collapse
|
6
|
Jobert F, Yadav S, Robert S. Auxin as an architect of the pectin matrix. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:6933-6949. [PMID: 37166384 PMCID: PMC10690733 DOI: 10.1093/jxb/erad174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Accepted: 05/10/2023] [Indexed: 05/12/2023]
Abstract
Auxin is a versatile plant growth regulator that triggers multiple signalling pathways at different spatial and temporal resolutions. A plant cell is surrounded by the cell wall, a complex and dynamic network of polysaccharides. The cell wall needs to be rigid to provide mechanical support and protection and highly flexible to allow cell growth and shape acquisition. The modification of the pectin components, among other processes, is a mechanism by which auxin activity alters the mechanical properties of the cell wall. Auxin signalling precisely controls the transcriptional output of several genes encoding pectin remodelling enzymes, their local activity, pectin deposition, and modulation in different developmental contexts. This review examines the mechanism of auxin activity in regulating pectin chemistry at organ, cellular, and subcellular levels across diverse plant species. Moreover, we ask questions that remain to be addressed to fully understand the interplay between auxin and pectin in plant growth and development.
Collapse
Affiliation(s)
- François Jobert
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences (SLU), 90183, Umeå, Sweden
- CRRBM, Université de Picardie Jules Verne, 80000, Amiens, France
| | - Sandeep Yadav
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences (SLU), 90183, Umeå, Sweden
| | - Stéphanie Robert
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences (SLU), 90183, Umeå, Sweden
| |
Collapse
|
7
|
Li R, Zhao R, Yang M, Zhang X, Lin J. Membrane microdomains: Structural and signaling platforms for establishing membrane polarity. PLANT PHYSIOLOGY 2023; 193:2260-2277. [PMID: 37549378 DOI: 10.1093/plphys/kiad444] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Revised: 05/16/2023] [Accepted: 07/11/2023] [Indexed: 08/09/2023]
Abstract
Cell polarity results from the asymmetric distribution of cellular structures, molecules, and functions. Polarity is a fundamental cellular trait that can determine the orientation of cell division, the formation of particular cell shapes, and ultimately the development of a multicellular body. To maintain the distinct asymmetric distribution of proteins and lipids in cellular membranes, plant cells have developed complex trafficking and regulatory mechanisms. Major advances have been made in our understanding of how membrane microdomains influence the asymmetric distribution of proteins and lipids. In this review, we first give an overview of cell polarity. Next, we discuss current knowledge concerning membrane microdomains and their roles as structural and signaling platforms to establish and maintain membrane polarity, with a special focus on the asymmetric distribution of proteins and lipids, and advanced microscopy techniques to observe and characterize membrane microdomains. Finally, we review recent advances regarding membrane trafficking in cell polarity establishment and how the balance between exocytosis and endocytosis affects membrane polarity.
Collapse
Affiliation(s)
- Ruili Li
- State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- National Engineering Research Center of Tree Breeding and Ecological Restoration, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- The Tree and Ornamental Plant Breeding and Biotechnology Laboratory of National Forestry and Grassland Administration, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- Institute of Tree Development and Genome Editing, Beijing Forestry University, Beijing, China
| | - Ran Zhao
- State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- National Engineering Research Center of Tree Breeding and Ecological Restoration, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- The Tree and Ornamental Plant Breeding and Biotechnology Laboratory of National Forestry and Grassland Administration, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- Institute of Tree Development and Genome Editing, Beijing Forestry University, Beijing, China
| | - Mei Yang
- State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- National Engineering Research Center of Tree Breeding and Ecological Restoration, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- The Tree and Ornamental Plant Breeding and Biotechnology Laboratory of National Forestry and Grassland Administration, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- Institute of Tree Development and Genome Editing, Beijing Forestry University, Beijing, China
| | - Xi Zhang
- State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- National Engineering Research Center of Tree Breeding and Ecological Restoration, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- The Tree and Ornamental Plant Breeding and Biotechnology Laboratory of National Forestry and Grassland Administration, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- Institute of Tree Development and Genome Editing, Beijing Forestry University, Beijing, China
| | - Jinxing Lin
- State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- National Engineering Research Center of Tree Breeding and Ecological Restoration, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- The Tree and Ornamental Plant Breeding and Biotechnology Laboratory of National Forestry and Grassland Administration, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- Institute of Tree Development and Genome Editing, Beijing Forestry University, Beijing, China
| |
Collapse
|
8
|
Maeng KH, Lee H, Cho HT. FAB1C, a phosphatidylinositol 3-phosphate 5-kinase, interacts with PIN-FORMEDs and modulates their lytic trafficking in Arabidopsis. Proc Natl Acad Sci U S A 2023; 120:e2310126120. [PMID: 37934824 PMCID: PMC10655590 DOI: 10.1073/pnas.2310126120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Accepted: 10/10/2023] [Indexed: 11/09/2023] Open
Abstract
PIN-FORMEDs (PINs) are auxin efflux carriers that asymmetrically target the plasma membrane (PM) and are critical for forming local auxin gradients and auxin responses. While the cytoplasmic hydrophilic loop domain of PIN (PIN-HL) is known to include some molecular cues (e.g., phosphorylation) for the modulation of PIN's intracellular trafficking and activity, the complexity of auxin responses suggests that additional regulatory modules may operate in the PIN-HL domain. Here, we have identified and characterized a PIN-HL-interacting protein (PIP) called FORMATION OF APLOID AND BINUCLEATE CELL 1C (FAB1C), a phosphatidylinositol-3-phosphate 5-kinase, which modulates PIN's lytic trafficking. FAB1C directly interacts with PIN-HL and is required for the polarity establishment and vacuolar trafficking of PINs. Unphosphorylated forms of PIN2 interact more readily with FAB1C and are more susceptible to vacuolar lytic trafficking compared to phosphorylated forms. FAB1C also affected lateral root formation by modulating the abundance of periclinally localized PIN1 and auxin maximum in the growing lateral root primordium. These findings suggest that a membrane-lipid modifier can target the cargo-including vesicle by directly interacting with the cargo and modulate its trafficking depending on the cargo's phosphorylation status.
Collapse
Affiliation(s)
- Kwang-Ho Maeng
- Department of Biological Sciences, Seoul National University, Seoul08826, South Korea
| | - Hyodong Lee
- Department of Biological Sciences, Seoul National University, Seoul08826, South Korea
| | - Hyung-Taeg Cho
- Department of Biological Sciences, Seoul National University, Seoul08826, South Korea
| |
Collapse
|
9
|
Pukyšová V, Sans Sánchez A, Rudolf J, Nodzyński T, Zwiewka M. Arabidopsis flippase ALA3 is required for adjustment of early subcellular trafficking in plant response to osmotic stress. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:4959-4977. [PMID: 37353222 PMCID: PMC10498020 DOI: 10.1093/jxb/erad234] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Accepted: 06/23/2023] [Indexed: 06/25/2023]
Abstract
To compensate for their sessile lifestyle, plants developed several responses to exogenous changes. One of the previously investigated and not yet fully understood adaptations occurs at the level of early subcellular trafficking, which needs to be rapidly adjusted to maintain cellular homeostasis and membrane integrity under osmotic stress conditions. To form a vesicle, the membrane needs to be deformed, which is ensured by multiple factors, including the activity of specific membrane proteins, such as flippases from the family of P4-ATPases. The membrane pumps actively translocate phospholipids from the exoplasmic/luminal to the cytoplasmic membrane leaflet to generate curvature, which might be coupled with recruitment of proteins involved in vesicle formation at specific sites of the donor membrane. We show that lack of the AMINOPHOSPHOLIPID ATPASE3 (ALA3) flippase activity caused defects at the plasma membrane and trans-Golgi network, resulting in altered endocytosis and secretion, processes relying on vesicle formation and movement. The mentioned cellular defects were translated into decreased intracellular trafficking flexibility failing to adjust the root growth on osmotic stress-eliciting media. In conclusion, we show that ALA3 cooperates with ARF-GEF BIG5/BEN1 and ARF1A1C/BEX1 in a similar regulatory pathway to vesicle formation, and together they are important for plant adaptation to osmotic stress.
Collapse
Affiliation(s)
- Vendula Pukyšová
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University (MU), Kamenice 5, CZ 625 00, Brno, Czech Republic
- National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic
| | - Adrià Sans Sánchez
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University (MU), Kamenice 5, CZ 625 00, Brno, Czech Republic
- National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic
| | - Jiří Rudolf
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University (MU), Kamenice 5, CZ 625 00, Brno, Czech Republic
- National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic
- Department of Experimental Biology, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic
| | - Tomasz Nodzyński
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University (MU), Kamenice 5, CZ 625 00, Brno, Czech Republic
| | - Marta Zwiewka
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University (MU), Kamenice 5, CZ 625 00, Brno, Czech Republic
| |
Collapse
|
10
|
Marconi M, Wabnik K. Computer models of cell polarity establishment in plants. PLANT PHYSIOLOGY 2023; 193:42-53. [PMID: 37144853 PMCID: PMC10469401 DOI: 10.1093/plphys/kiad264] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Revised: 03/30/2023] [Accepted: 04/14/2023] [Indexed: 05/06/2023]
Abstract
Plant development is a complex task, and many processes involve changes in the asymmetric subcellular distribution of cell components that strongly depend on cell polarity. Cell polarity regulates anisotropic growth and polar localization of membrane proteins and helps to identify the cell's position relative to its neighbors within an organ. Cell polarity is critical in a variety of plant developmental processes, including embryogenesis, cell division, and response to external stimuli. The most conspicuous downstream effect of cell polarity is the polar transport of the phytohormone auxin, which is the only known hormone transported in a polar fashion in and out of cells by specialized exporters and importers. The biological processes behind the establishment of cell polarity are still unknown, and researchers have proposed several models that have been tested using computer simulations. The evolution of computer models has progressed in tandem with scientific discoveries, which have highlighted the importance of genetic, chemical, and mechanical input in determining cell polarity and regulating polarity-dependent processes such as anisotropic growth, protein subcellular localization, and the development of organ shapes. The purpose of this review is to provide a comprehensive overview of the current understanding of computer models of cell polarity establishment in plants, focusing on the molecular and cellular mechanisms, the proteins involved, and the current state of the field.
Collapse
Affiliation(s)
- Marco Marconi
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación Agraria y Alimentaria (INIA/CSIC), Campus de Montegancedo, Pozuelo de Alarcón, Madrid, Spain
| | - Krzysztof Wabnik
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación Agraria y Alimentaria (INIA/CSIC), Campus de Montegancedo, Pozuelo de Alarcón, Madrid, Spain
| |
Collapse
|
11
|
Guo X, Zhu K, Zhu X, Zhao W, Miao Y. Two-dimensional molecular condensation in cell signaling and mechanosensing. Acta Biochim Biophys Sin (Shanghai) 2023; 55:1064-1074. [PMID: 37475548 PMCID: PMC10423693 DOI: 10.3724/abbs.2023132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2023] [Accepted: 05/21/2023] [Indexed: 07/22/2023] Open
Abstract
Membraneless organelles (MLO) regulate diverse biological processes in a spatiotemporally controlled manner spanning from inside to outside of the cells. The plasma membrane (PM) at the cell surface serves as a central platform for forming multi-component signaling hubs that sense mechanical and chemical cues during physiological and pathological conditions. During signal transduction, the assembly and formation of membrane-bound MLO are dynamically tunable depending on the physicochemical properties of the surrounding environment and partitioning biomolecules. Biomechanical properties of MLO-associated membrane structures can control the microenvironment for biomolecular interactions and assembly. Lipid-protein complex interactions determine the catalytic region's assembly pattern and assembly rate and, thereby, the amplitude of activities. In this review, we will focus on how cell surface microenvironments, including membrane curvature, surface topology and tension, lipid-phase separation, and adhesion force, guide the assembly of PM-associated MLO for cell signal transductions.
Collapse
Affiliation(s)
- Xiangfu Guo
- School of ChemistryChemical Engineering and BiotechnologyNanyang Technological UniversitySingapore637457Singapore
| | - Kexin Zhu
- School of Biological SciencesNanyang Technological UniversitySingapore637551Singapore
| | - Xinlu Zhu
- School of Biological SciencesNanyang Technological UniversitySingapore637551Singapore
| | - Wenting Zhao
- School of ChemistryChemical Engineering and BiotechnologyNanyang Technological UniversitySingapore637457Singapore
- Institute for Digital Molecular Analytics and ScienceNanyang Technological UniversitySingapore636921Singapore
| | - Yansong Miao
- School of Biological SciencesNanyang Technological UniversitySingapore637551Singapore
- Institute for Digital Molecular Analytics and ScienceNanyang Technological UniversitySingapore636921Singapore
| |
Collapse
|
12
|
Li X, Zhu P, Chen YJ, Huang L, Wang D, Newton DT, Hsu CC, Lin G, Tao WA, Staiger CJ, Zhang C. The EXO70 inhibitor Endosidin2 alters plasma membrane protein composition in Arabidopsis roots. FRONTIERS IN PLANT SCIENCE 2023; 14:1171957. [PMID: 37324680 PMCID: PMC10264680 DOI: 10.3389/fpls.2023.1171957] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Accepted: 05/15/2023] [Indexed: 06/17/2023]
Abstract
To sustain normal growth and allow rapid responses to environmental cues, plants alter the plasma membrane protein composition under different conditions presumably by regulation of delivery, stability, and internalization. Exocytosis is a conserved cellular process that delivers proteins and lipids to the plasma membrane or extracellular space in eukaryotes. The octameric exocyst complex contributes to exocytosis by tethering secretory vesicles to the correct site for membrane fusion; however, whether the exocyst complex acts universally for all secretory vesicle cargo or just for specialized subsets used during polarized growth and trafficking is currently unknown. In addition to its role in exocytosis, the exocyst complex is also known to participate in membrane recycling and autophagy. Using a previously identified small molecule inhibitor of the plant exocyst complex subunit EXO70A1, Endosidin2 (ES2), combined with a plasma membrane enrichment method and quantitative proteomic analysis, we examined the composition of plasma membrane proteins in the root of Arabidopsis seedlings, after inhibition of the ES2-targetted exocyst complex, and verified our findings by live imaging of GFP-tagged plasma membrane proteins in root epidermal cells. The abundance of 145 plasma membrane proteins was significantly reduced following short-term ES2 treatments and these likely represent candidate cargo proteins of exocyst-mediated trafficking. Gene Ontology analysis showed that these proteins play diverse functions in cell growth, cell wall biosynthesis, hormone signaling, stress response, membrane transport, and nutrient uptake. Additionally, we quantified the effect of ES2 on the spatial distribution of EXO70A1 with live-cell imaging. Our results indicate that the plant exocyst complex mediates constitutive dynamic transport of subsets of plasma membrane proteins during normal root growth.
Collapse
Affiliation(s)
- Xiaohui Li
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, United States
- Center for Plant Biology, Purdue University, West Lafayette, IN, United States
| | - Peipei Zhu
- Department of Biochemistry, Purdue University, West Lafayette, IN, United States
- Department of Chemistry, Purdue University, West Lafayette, IN, United States
| | - Yen-Ju Chen
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, United States
- Center for Plant Biology, Purdue University, West Lafayette, IN, United States
| | - Lei Huang
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, United States
- Center for Plant Biology, Purdue University, West Lafayette, IN, United States
| | - Diwen Wang
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, United States
- Center for Plant Biology, Purdue University, West Lafayette, IN, United States
| | - David T. Newton
- Department of Statistics, Purdue University, West Lafayette, IN, United States
| | - Chuan-Chih Hsu
- Department of Biochemistry, Purdue University, West Lafayette, IN, United States
| | - Guang Lin
- Department of Mathematics, Purdue University, West Lafayette, IN, United States
- School of Mechanical Engineering, Purdue University, West Lafayette, IN, United States
| | - W. Andy Tao
- Department of Biochemistry, Purdue University, West Lafayette, IN, United States
- Department of Chemistry, Purdue University, West Lafayette, IN, United States
| | - Christopher J. Staiger
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, United States
- Center for Plant Biology, Purdue University, West Lafayette, IN, United States
- Department of Biological Sciences, Purdue University, West Lafayette, IN, United States
| | - Chunhua Zhang
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, United States
- Center for Plant Biology, Purdue University, West Lafayette, IN, United States
| |
Collapse
|
13
|
Konishi N, Mitani-Ueno N, Yamaji N, Ma JF. Polar localization of a rice silicon transporter requires isoleucine at both C- and N-termini as well as positively charged residues. THE PLANT CELL 2023; 35:2232-2250. [PMID: 36891818 PMCID: PMC10226592 DOI: 10.1093/plcell/koad073] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2022] [Revised: 01/18/2023] [Accepted: 02/16/2023] [Indexed: 05/30/2023]
Abstract
Silicon (Si) is important for stable and high yields in rice (Oryza sativa), a typical Si hyperaccumulator. The high Si accumulation is achieved by the cooperation of 2 Si transporters, LOW SILICON 1 (OsLsi1) and OsLsi2, which are polarly localized in cells of the root exodermis and endodermis. However, the mechanism underlying their polar localization is unknown. Here, we identified amino acid residues critical for the polar localization of OsLsi1. Deletion of both N- and C-terminal regions resulted in the loss of its polar localization. Furthermore, the deletion of the C-terminus inhibited its trafficking from the endoplasmic reticulum to the plasma membrane. Detailed site-directed mutagenesis analysis showed that Ile18 at the N-terminal region and Ile285 at the C-terminal region were essential for the polar localization of OsLsi1. Moreover, a cluster of positively charged residues at the C-terminal region is also required for polar localization. Phosphorylation and Lys modifications of OsLsi1 are unlikely to be involved in its polar localization. Finally, we showed that the polar localization of OsLsi1 is required for the efficient uptake of Si. Our study not only identified critical residues required for the polar localization of OsLsi1, but also provided experimental evidence for the importance of transporter polarity for efficient nutrient uptake.
Collapse
Affiliation(s)
- Noriyuki Konishi
- Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki 710-0046, Japan
| | - Namiki Mitani-Ueno
- Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki 710-0046, Japan
| | - Naoki Yamaji
- Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki 710-0046, Japan
| | | |
Collapse
|
14
|
Dávila-Delgado R, Flores-Canúl K, Juárez-Verdayes MA, Sánchez-López R. Rhizobia induce SYMRK endocytosis in Phaseolus vulgaris root hair cells. PLANTA 2023; 257:83. [PMID: 36928335 PMCID: PMC10020325 DOI: 10.1007/s00425-023-04116-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Accepted: 03/06/2023] [Indexed: 06/18/2023]
Abstract
PvSYMRK-EGFP undergoes constitutive and rhizobia-induced endocytosis, which rely on the phosphorylation status of T589, the endocytic YXXØ motif and the kinase activity of the receptor. Legume-rhizobia nodulation is a complex developmental process. It initiates when the rhizobia-produced Nod factors are perceived by specific LysM receptors present in the root hair apical membrane. Consequently, SYMRK (Symbiosis Receptor-like Kinase) becomes active in the root hair and triggers an extensive signaling network essential for the infection process and nodule organogenesis. Despite its relevant functions, the underlying cellular mechanisms involved in SYMRK signaling activity remain poorly characterized. In this study, we demonstrated that PvSYMRK-EGFP undergoes constitutive and rhizobia-induced endocytosis. We found that in uninoculated roots, PvSYMRK-EGFP is mainly associated with the plasma membrane, although intracellular puncta labelled with PvSymRK-EGFP were also observed in root hair and nonhair-epidermal cells. Inoculation with Rhizobium etli producing Nod factors induces in the root hair a redistribution of PvSYMRK-EGFP from the plasma membrane to intracellular puncta. In accordance, deletion of the endocytic motif YXXØ (YKTL) and treatment with the endocytosis inhibitors ikarugamycin (IKA) and tyrphostin A23 (TyrA23), as well as brefeldin A (BFA), drastically reduced the density of intracellular PvSYMRK-EGFP puncta. A similar effect was observed in the phosphorylation-deficient (T589A) and kinase-dead (K618E) mutants of PvSYMRK-EGFP, implying these structural features are positive regulators of PvSYMRK-EGFP endocytosis. Our findings lead us to postulate that rhizobia-induced endocytosis of SYMRK modulates the duration and amplitude of the SYMRK-dependent signaling pathway.
Collapse
Affiliation(s)
- Raúl Dávila-Delgado
- Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Colonia Chamilpa, 62210 Cuernavaca, Morelos Mexico
| | - Karen Flores-Canúl
- Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Colonia Chamilpa, 62210 Cuernavaca, Morelos Mexico
| | - Marco Adán Juárez-Verdayes
- Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Colonia Chamilpa, 62210 Cuernavaca, Morelos Mexico
| | - Rosana Sánchez-López
- Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Colonia Chamilpa, 62210 Cuernavaca, Morelos Mexico
| |
Collapse
|
15
|
Light Microscopy Technologies and the Plant Cytoskeleton. Methods Mol Biol 2023; 2604:337-352. [PMID: 36773248 DOI: 10.1007/978-1-0716-2867-6_28] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
Abstract
The cytoskeleton is a dynamic and diverse subcellular filament network, and as such microscopy is an essential technology to enable researchers to study and characterize these systems. Microscopy has a long history of observing the plant world not least as the subject where Robert Hooke coined the term "cell" in his publication Micrographia. From early observations of plant morphology to today's advanced super-resolution technologies, light microscopy is the indispensable tool for the plant cell biologist. In this mini review, we will discuss some of the major modalities used to examine the plant cytoskeleton and the theory behind them.
Collapse
|
16
|
Kenesi E, Kolbert Z, Kaszler N, Klement É, Ménesi D, Molnár Á, Valkai I, Feigl G, Rigó G, Cséplő Á, Lindermayr C, Fehér A. The ROP2 GTPase Participates in Nitric Oxide (NO)-Induced Root Shortening in Arabidopsis. PLANTS (BASEL, SWITZERLAND) 2023; 12:750. [PMID: 36840099 PMCID: PMC9964108 DOI: 10.3390/plants12040750] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Revised: 01/20/2023] [Accepted: 02/03/2023] [Indexed: 06/18/2023]
Abstract
Nitric oxide (NO) is a versatile signal molecule that mediates environmental and hormonal signals orchestrating plant development. NO may act via reversible S-nitrosation of proteins during which an NO moiety is added to a cysteine thiol to form an S-nitrosothiol. In plants, several proteins implicated in hormonal signaling have been reported to undergo S-nitrosation. Here, we report that the Arabidopsis ROP2 GTPase is a further potential target of NO-mediated regulation. The ROP2 GTPase was found to be required for the root shortening effect of NO. NO inhibits primary root growth by altering the abundance and distribution of the PIN1 auxin efflux carrier protein and lowering the accumulation of auxin in the root meristem. In rop2-1 insertion mutants, however, wild-type-like root size of the NO-treated roots were maintained in agreement with wild-type-like PIN1 abundance in the meristem. The ROP2 GTPase was shown to be S-nitrosated in vitro, suggesting that NO might directly regulate the GTPase. The potential mechanisms of NO-mediated ROP2 GTPase regulation and ROP2-mediated NO signaling in the primary root meristem are discussed.
Collapse
Affiliation(s)
- Erzsébet Kenesi
- Institute of Plant Biology, Biological Research Centre, Eötvös Lóránd Research Network, Temesvári Krt. 62, H-6726 Szeged, Hungary
| | - Zsuzsanna Kolbert
- Department of Plant Biology, University of Szeged, Közép Fasor 52, H-6726 Szeged, Hungary
| | - Nikolett Kaszler
- Institute of Plant Biology, Biological Research Centre, Eötvös Lóránd Research Network, Temesvári Krt. 62, H-6726 Szeged, Hungary
- Department of Plant Biology, University of Szeged, Közép Fasor 52, H-6726 Szeged, Hungary
| | - Éva Klement
- Laboratory of Proteomics Research, Biological Research Centre, Eötvös Lóránd Research Network, Temesvári Krt. 62, H-6726 Szeged, Hungary
- Hungarian Centre of Excellence for Molecular Medicine, Single Cell Omics ACF, H-6728 Szeged, Hungary
| | - Dalma Ménesi
- Institute of Plant Biology, Biological Research Centre, Eötvös Lóránd Research Network, Temesvári Krt. 62, H-6726 Szeged, Hungary
| | - Árpád Molnár
- Department of Plant Biology, University of Szeged, Közép Fasor 52, H-6726 Szeged, Hungary
| | - Ildikó Valkai
- Institute of Plant Biology, Biological Research Centre, Eötvös Lóránd Research Network, Temesvári Krt. 62, H-6726 Szeged, Hungary
| | - Gábor Feigl
- Department of Plant Biology, University of Szeged, Közép Fasor 52, H-6726 Szeged, Hungary
| | - Gábor Rigó
- Institute of Plant Biology, Biological Research Centre, Eötvös Lóránd Research Network, Temesvári Krt. 62, H-6726 Szeged, Hungary
| | - Ágnes Cséplő
- Institute of Plant Biology, Biological Research Centre, Eötvös Lóránd Research Network, Temesvári Krt. 62, H-6726 Szeged, Hungary
| | - Christian Lindermayr
- Institute of Biochemical Plant Pathology, Helmholtz Zentrum München—German Research Center for Environmental Health, Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany
| | - Attila Fehér
- Institute of Plant Biology, Biological Research Centre, Eötvös Lóránd Research Network, Temesvári Krt. 62, H-6726 Szeged, Hungary
- Department of Plant Biology, University of Szeged, Közép Fasor 52, H-6726 Szeged, Hungary
| |
Collapse
|
17
|
Traeger J, Hu D, Yang M, Stacey G, Orr G. Super-Resolution Imaging of Plant Receptor-Like Kinases Uncovers Their Colocalization and Coordination with Nanometer Resolution. MEMBRANES 2023; 13:142. [PMID: 36837645 PMCID: PMC9958960 DOI: 10.3390/membranes13020142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Revised: 01/07/2023] [Accepted: 01/18/2023] [Indexed: 06/17/2023]
Abstract
Plant cell signaling often relies on the cellular organization of receptor-like kinases (RLKs) within membrane nanodomains to enhance signaling specificity and efficiency. Thus, nanometer-scale quantitative analysis of spatial organizations of RLKs could provide new understanding of mechanisms underlying plant responses to environmental stress. Here, we used stochastic optical reconstruction fluorescence microscopy (STORM) to quantify the colocalization of the flagellin-sensitive-2 (FLS2) receptor and the nanodomain marker, remorin, within Arabidopsis thaliana root hair cells. We found that recovery of FLS2 and remorin in the plasma membrane, following ligand-induced internalization by bacterial-flagellin-peptide (flg22), reached ~85% of their original membrane density after ~90 min. The pairs colocalized at the membrane at greater frequencies, compared with simulated randomly distributed pairs, except for directly after recovery, suggesting initial uncoordinated recovery followed by remorin and FLS2 pairing in the membrane. The purinergic receptor, P2K1, colocalized with remorin at similar frequencies as FLS2, while FLS2 and P2K1 colocalization occurred at significantly lower frequencies, suggesting that these RLKs mostly occupy distinct nanodomains. The chitin elicitor receptor, CERK1, colocalized with FLS2 and remorin at much lower frequencies, suggesting little coordination between CERK1 and FLS2. These findings emphasize STORM's capacity to observe distinct nanodomains and degrees of coordination between plant cell receptors, and their respective immune pathways.
Collapse
Affiliation(s)
- Jeremiah Traeger
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99354, USA
| | - Dehong Hu
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99354, USA
| | - Mengran Yang
- Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA
| | - Gary Stacey
- Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA
| | - Galya Orr
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99354, USA
| |
Collapse
|
18
|
Xi J, Zeng J, Fu X, Zhang L, Li G, Li B, Yan X, Chu Q, Xiao Y, Pei Y, Zhang M. GhROP6 GTPase modulates auxin accumulation in cotton fibers by regulating cell-specific GhPIN3a localization. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:265-282. [PMID: 36255218 DOI: 10.1093/jxb/erac416] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2022] [Accepted: 10/17/2022] [Indexed: 06/16/2023]
Abstract
PIN-FORMED- (PIN) mediated polar auxin transport plays a predominant role in most auxin-triggered organogenesis in plants. Global control of PIN polarity at the plasma membrane contributes to the essential establishment of auxin maxima in most multicellular tissues. However, establishment of auxin maxima in single cells is poorly understood. Cotton fibers, derived from ovule epidermal cells by auxin-triggered cell protrusion, provide an ideal model to explore the underlying mechanism. Here, we report that cell-specific degradation of GhPIN3a, which guides the establishment of the auxin gradient in cotton ovule epidermal cells, is associated with the preferential expression of GhROP6 GTPase in fiber cells. In turn, GhROP6 reduces GhPIN3a abundance at the plasma membrane and facilitates intracellular proteolysis of GhPIN3a. Overexpression and activation of GhROP6 promote cell elongation, resulting in a substantial improvement in cotton fiber length.
Collapse
Affiliation(s)
- Jing Xi
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing, 400715, PR China
- Academy of Agricultural Sciences, Southwest University, Chongqing, PR China
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Southwest University, Chongqing, PR China
| | - Jianyan Zeng
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing, 400715, PR China
- Academy of Agricultural Sciences, Southwest University, Chongqing, PR China
| | - Xingxian Fu
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing, 400715, PR China
- Academy of Agricultural Sciences, Southwest University, Chongqing, PR China
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Southwest University, Chongqing, PR China
| | - Liuqin Zhang
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing, 400715, PR China
- Academy of Agricultural Sciences, Southwest University, Chongqing, PR China
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Southwest University, Chongqing, PR China
| | - Gailing Li
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing, 400715, PR China
| | - Baoxia Li
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing, 400715, PR China
- Academy of Agricultural Sciences, Southwest University, Chongqing, PR China
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Southwest University, Chongqing, PR China
| | - Xingying Yan
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing, 400715, PR China
- Academy of Agricultural Sciences, Southwest University, Chongqing, PR China
| | - Qingqing Chu
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing, 400715, PR China
- Academy of Agricultural Sciences, Southwest University, Chongqing, PR China
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Southwest University, Chongqing, PR China
| | - Yuehua Xiao
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing, 400715, PR China
- Academy of Agricultural Sciences, Southwest University, Chongqing, PR China
| | - Yan Pei
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing, 400715, PR China
- Academy of Agricultural Sciences, Southwest University, Chongqing, PR China
| | - Mi Zhang
- Biotechnology Research Center, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing, 400715, PR China
- Academy of Agricultural Sciences, Southwest University, Chongqing, PR China
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Southwest University, Chongqing, PR China
| |
Collapse
|
19
|
Liu P, Fang Y, Tan X, Hu Z, Jin Y, Yi Z, He K, Wei C, Chen R, Zhao H. Local endocytosis of sucrose transporter 2 in duckweed reveals the role of sucrose transporter 2 in guard cells. FRONTIERS IN PLANT SCIENCE 2022; 13:996618. [PMID: 36352881 PMCID: PMC9638040 DOI: 10.3389/fpls.2022.996618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Accepted: 10/06/2022] [Indexed: 06/16/2023]
Abstract
The local endocytosis of membrane proteins is critical for many physiological processes in plants, including the regulation of growth, development, nutrient absorption, and osmotic stress response. Much of our knowledge on the local endocytosis of plasma membrane (PM) protein only focuses on the polar growth of pollen tubes in plants and neuronal axon in animals. However, the role of local endocytosis of PM proteins in guard cells has not yet been researched. Here, we first cloned duckweed SUT2 (sucrose transporter 2) protein and then conducted subcellular and histological localization of the protein. Our results indicated that LpSUT2 (Landoltia punctata 0202 SUT2) is a PM protein highly expressed on guard cells. In vitro experiments on WT (wild type) lines treated with high sucrose concentration showed that the content of ROS (reactive oxygen species) in guard cells increased and stomatal conductance decreased. We observed the same results in the lines after overexpression of the LpSUT2 gene with newfound local endocytosis of LpSUT2. The local endocytosis mainly showed that LpSUT2 was uniformly distributed on the PM of guard cells in the early stage of development, and was only distributed in the endomembrane of guard cells in the mature stage. Therefore, we found the phenomenon of guard cell LpSUT2 local endocytosis through the changes of duckweed stomata and concluded that LpSUT2 local endocytosis might be dependent on ROS accumulation in the development of duckweed guard cells. This paper might provide future references for the genetic improvement and water-use efficiency in other crops.
Collapse
Affiliation(s)
- Penghui Liu
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Yang Fang
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Xiao Tan
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Zhubin Hu
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Yanling Jin
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Zhuolin Yi
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Kaize He
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Cuicui Wei
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Rui Chen
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Hai Zhao
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
- University of Chinese Academy of Sciences, Beijing, China
| |
Collapse
|
20
|
Abstract
When the microscope was first introduced to scientists in the 17th century, it started a revolution. Suddenly, a whole new world, invisible to the naked eye, was opened to curious explorers. In response to this realization, Nehemiah Grew, an English plant anatomist and physiologist and one of the early microscopists, noted in 1682 "that Nothing hereof remains further to be known, is a Thought not well Calculated". Since Grew made his observations, the microscope has undergone numerous variations, developing from early compound microscopes-hollow metal tubes with a lens on each end-to the modern, sophisticated, out-of-the-box super-resolution microscopes available to researchers today. In this Overview article, I describe these developments and discuss how each new and improved variant of the microscope led to major breakthroughs in the life sciences, with a focus on the plant field. These advances start with Grew's simple and-at the time-surprising realization that plant cells are as complex as animals cells, and that the different parts of the plant body indeed qualify to be called "organs", then move on to the development of the groundbreaking "cell theory" in the mid-19th century and the description of eu- and heterochromatin in the early 20th century, and finish with the precise localization of individual proteins in intact, living cells that we can perform today. Indeed, Grew was right; with ever-increasing resolution, there really does not seem to be an end to what can be explored with a microscope. © 2022 The Authors. Current Protocols published by Wiley Periodicals LLC.
Collapse
Affiliation(s)
- Marc Somssich
- School of BioSciences, University of Melbourne, Parkville, Victoria, Australia
| |
Collapse
|
21
|
Bilanovičová V, Rýdza N, Koczka L, Hess M, Feraru E, Friml J, Nodzyński T. The Hydrophilic Loop of Arabidopsis PIN1 Auxin Efflux Carrier Harbors Hallmarks of an Intrinsically Disordered Protein. Int J Mol Sci 2022; 23:6352. [PMID: 35683031 PMCID: PMC9181416 DOI: 10.3390/ijms23116352] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Revised: 05/31/2022] [Accepted: 06/04/2022] [Indexed: 02/01/2023] Open
Abstract
Much of plant development depends on cell-to-cell redistribution of the plant hormone auxin, which is facilitated by the plasma membrane (PM) localized PIN FORMED (PIN) proteins. Auxin export activity, developmental roles, subcellular trafficking, and polarity of PINs have been well studied, but their structure remains elusive besides a rough outline that they contain two groups of 5 alpha-helices connected by a large hydrophilic loop (HL). Here, we focus on the PIN1 HL as we could produce it in sufficient quantities for biochemical investigations to provide insights into its secondary structure. Circular dichroism (CD) studies revealed its nature as an intrinsically disordered protein (IDP), manifested by the increase of structure content upon thermal melting. Consistent with IDPs serving as interaction platforms, PIN1 loops homodimerize. PIN1 HL cytoplasmic overexpression in Arabidopsis disrupts early endocytic trafficking of PIN1 and PIN2 and causes defects in the cotyledon vasculature formation. In summary, we demonstrate that PIN1 HL has an intrinsically disordered nature, which must be considered to gain further structural insights. Some secondary structures may form transiently during pairing with known and yet-to-be-discovered interactors.
Collapse
Affiliation(s)
- Veronika Bilanovičová
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University, Kamenice 5, CZ-625 00 Brno, Czech Republic; (V.B.); (N.R.); (L.K.); (M.H.)
- National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, CZ-625 00 Brno, Czech Republic
| | - Nikola Rýdza
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University, Kamenice 5, CZ-625 00 Brno, Czech Republic; (V.B.); (N.R.); (L.K.); (M.H.)
- National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, CZ-625 00 Brno, Czech Republic
| | - Lilla Koczka
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University, Kamenice 5, CZ-625 00 Brno, Czech Republic; (V.B.); (N.R.); (L.K.); (M.H.)
- National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, CZ-625 00 Brno, Czech Republic
| | - Martin Hess
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University, Kamenice 5, CZ-625 00 Brno, Czech Republic; (V.B.); (N.R.); (L.K.); (M.H.)
- National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, CZ-625 00 Brno, Czech Republic
| | - Elena Feraru
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium; (E.F.); (J.F.)
- VIB-UGent Center for Plant Systems, Technologiepark 71, 9052 Ghent, Belgium
- Department of Applied Genetics and Cell Biology (DAGZ), Institute of Molecular Plant Biology (IMPB), University of Natural Resources and Life Sciences (BOKU), Muthgasse 18, 1190 Vienna, Austria
| | - Jiří Friml
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium; (E.F.); (J.F.)
- VIB-UGent Center for Plant Systems, Technologiepark 71, 9052 Ghent, Belgium
- Institute of Science and Technology (IST), 3400 Klosterneuburg, Austria
| | - Tomasz Nodzyński
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University, Kamenice 5, CZ-625 00 Brno, Czech Republic; (V.B.); (N.R.); (L.K.); (M.H.)
| |
Collapse
|
22
|
Chen P, Ge Y, Chen L, Yan F, Cai L, Zhao H, Lei D, Jiang J, Wang M, Tao Y. SAV4 is required for ethylene-induced root hair growth through stabilizing PIN2 auxin transporter in Arabidopsis. THE NEW PHYTOLOGIST 2022; 234:1735-1752. [PMID: 35274300 DOI: 10.1111/nph.18079] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Accepted: 02/27/2022] [Indexed: 06/14/2023]
Abstract
Root hair development is regulated by hormonal and environmental cues, such as ethylene and low phosphate. Auxin efflux carrier PIN2 (PIN-FORMED 2) plays an important role in establishing a proper auxin gradient in root tips, which is required for root hair development. Ethylene promotes root hair development through increasing PIN2 abundance in root tips, which subsequently leads to enhanced expression of auxin reporter genes. However, how PIN2 is regulated remains obscure. Here, we report that Arabidopsis thaliana sav4 (shade avoidance 4) mutant exhibits defects in ethylene-induced root hair development and in establishing a proper auxin gradient in root tips. Ethylene treatment increased SAV4 abundance in root tips. SAV4 and PIN2 co-localize to the shootward plasma membrane (PM) of root tip epidermal cells. SAV4 directly interacts with the PIN2 hydrophilic region (PIN2HL) and regulates PIN2 abundance on the PM. Vacuolar degradation of PIN2 is suppressed by ethylene, which was weakened in sav4 mutant. Furthermore, SAV4 affects the formation of PIN2 clusters and its lateral diffusion on the PM. In summary, we identified SAV4 as a novel regulator of PIN2 that enhances PIN2 membrane clustering and stability through direct protein-protein interactions. Our study revealed a new layer of regulation on PIN2 dynamics.
Collapse
Affiliation(s)
- Peirui Chen
- School of Life Sciences, Xiamen Plant Genetics Key Laboratory and State Key Laboratory of Cellular Stress Biology, Xiamen University, Xiang'an South Road, Xiamen, Fujian Province, 361102, China
| | - Yanhua Ge
- School of Life Sciences, Xiamen Plant Genetics Key Laboratory and State Key Laboratory of Cellular Stress Biology, Xiamen University, Xiang'an South Road, Xiamen, Fujian Province, 361102, China
| | - Liying Chen
- School of Life Sciences, Xiamen Plant Genetics Key Laboratory and State Key Laboratory of Cellular Stress Biology, Xiamen University, Xiang'an South Road, Xiamen, Fujian Province, 361102, China
| | - Fenglian Yan
- School of Life Sciences, Xiamen Plant Genetics Key Laboratory and State Key Laboratory of Cellular Stress Biology, Xiamen University, Xiang'an South Road, Xiamen, Fujian Province, 361102, China
| | - Lingling Cai
- School of Life Sciences, Xiamen Plant Genetics Key Laboratory and State Key Laboratory of Cellular Stress Biology, Xiamen University, Xiang'an South Road, Xiamen, Fujian Province, 361102, China
| | - Hongli Zhao
- School of Life Sciences, Xiamen Plant Genetics Key Laboratory and State Key Laboratory of Cellular Stress Biology, Xiamen University, Xiang'an South Road, Xiamen, Fujian Province, 361102, China
| | - Deshun Lei
- School of Life Sciences, Xiamen Plant Genetics Key Laboratory and State Key Laboratory of Cellular Stress Biology, Xiamen University, Xiang'an South Road, Xiamen, Fujian Province, 361102, China
| | - Jinxi Jiang
- School of Life Sciences, Xiamen Plant Genetics Key Laboratory and State Key Laboratory of Cellular Stress Biology, Xiamen University, Xiang'an South Road, Xiamen, Fujian Province, 361102, China
| | - Meiling Wang
- School of Life Sciences, Xiamen Plant Genetics Key Laboratory and State Key Laboratory of Cellular Stress Biology, Xiamen University, Xiang'an South Road, Xiamen, Fujian Province, 361102, China
| | - Yi Tao
- School of Life Sciences, Xiamen Plant Genetics Key Laboratory and State Key Laboratory of Cellular Stress Biology, Xiamen University, Xiang'an South Road, Xiamen, Fujian Province, 361102, China
| |
Collapse
|
23
|
Abstract
Auxin has always been at the forefront of research in plant physiology and development. Since the earliest contemplations by Julius von Sachs and Charles Darwin, more than a century-long struggle has been waged to understand its function. This largely reflects the failures, successes, and inevitable progress in the entire field of plant signaling and development. Here I present 14 stations on our long and sometimes mystical journey to understand auxin. These highlights were selected to give a flavor of the field and to show the scope and limits of our current knowledge. A special focus is put on features that make auxin unique among phytohormones, such as its dynamic, directional transport network, which integrates external and internal signals, including self-organizing feedback. Accented are persistent mysteries and controversies. The unexpected discoveries related to rapid auxin responses and growth regulation recently disturbed our contentment regarding understanding of the auxin signaling mechanism. These new revelations, along with advances in technology, usher us into a new, exciting era in auxin research.
Collapse
Affiliation(s)
- Jiří Friml
- Institute of Science and Technology Austria, 3400 Klosterneuburg, Austria
| |
Collapse
|
24
|
Perico C, Tan S, Langdale JA. Developmental regulation of leaf venation patterns: monocot versus eudicots and the role of auxin. THE NEW PHYTOLOGIST 2022; 234:783-803. [PMID: 35020214 PMCID: PMC9994446 DOI: 10.1111/nph.17955] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Accepted: 12/14/2021] [Indexed: 06/14/2023]
Abstract
Organisation and patterning of the vascular network in land plants varies in different taxonomic, developmental and environmental contexts. In leaves, the degree of vascular strand connectivity influences both light and CO2 harvesting capabilities as well as hydraulic capacity. As such, developmental mechanisms that regulate leaf venation patterning have a direct impact on physiological performance. Development of the leaf venation network requires the specification of procambial cells within the ground meristem of the primordium and subsequent proliferation and differentiation of the procambial lineage to form vascular strands. An understanding of how diverse venation patterns are manifest therefore requires mechanistic insight into how procambium is dynamically specified in a growing leaf. A role for auxin in this process was identified many years ago, but questions remain. In this review we first provide an overview of the diverse venation patterns that exist in land plants, providing an evolutionary perspective. We then focus on the developmental regulation of leaf venation patterns in angiosperms, comparing patterning in eudicots and monocots, and the role of auxin in each case. Although common themes emerge, we conclude that the developmental mechanisms elucidated in eudicots are unlikely to fully explain how parallel venation patterns in monocot leaves are elaborated.
Collapse
Affiliation(s)
- Chiara Perico
- Department of Plant SciencesUniversity of OxfordSouth Parks RdOxfordOX1 3RBUK
| | - Sovanna Tan
- Department of Plant SciencesUniversity of OxfordSouth Parks RdOxfordOX1 3RBUK
| | - Jane A. Langdale
- Department of Plant SciencesUniversity of OxfordSouth Parks RdOxfordOX1 3RBUK
| |
Collapse
|
25
|
Ovečka M, Sojka J, Tichá M, Komis G, Basheer J, Marchetti C, Šamajová O, Kuběnová L, Šamaj J. Imaging plant cells and organs with light-sheet and super-resolution microscopy. PLANT PHYSIOLOGY 2022; 188:683-702. [PMID: 35235660 PMCID: PMC8825356 DOI: 10.1093/plphys/kiab349] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2021] [Accepted: 07/12/2021] [Indexed: 05/05/2023]
Abstract
The documentation of plant growth and development requires integrative and scalable approaches to investigate and spatiotemporally resolve various dynamic processes at different levels of plant body organization. The present update deals with vigorous developments in mesoscopy, microscopy and nanoscopy methods that have been translated to imaging of plant subcellular compartments, cells, tissues and organs over the past 3 years with the aim to report recent applications and reasonable expectations from current light-sheet fluorescence microscopy (LSFM) and super-resolution microscopy (SRM) modalities. Moreover, the shortcomings and limitations of existing LSFM and SRM are discussed, particularly for their ability to accommodate plant samples and regarding their documentation potential considering spherical aberrations or temporal restrictions prohibiting the dynamic recording of fast cellular processes at the three dimensions. For a more comprehensive description, advances in living or fixed sample preparation methods are also included, supported by an overview of developments in labeling strategies successfully applied in plants. These strategies are practically documented by current applications employing model plant Arabidopsis thaliana (L.) Heynh., but also robust crop species such as Medicago sativa L. and Hordeum vulgare L. Over the past few years, the trend towards designing of integrative microscopic modalities has become apparent and it is expected that in the near future LSFM and SRM will be bridged to achieve broader multiscale plant imaging with a single platform.
Collapse
Affiliation(s)
- Miroslav Ovečka
- Department of Cell Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University Olomouc, Šlechtitelů 27, 783 71 Olomouc, Czech Republic
| | - Jiří Sojka
- Department of Cell Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University Olomouc, Šlechtitelů 27, 783 71 Olomouc, Czech Republic
| | - Michaela Tichá
- Department of Cell Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University Olomouc, Šlechtitelů 27, 783 71 Olomouc, Czech Republic
| | - George Komis
- Department of Cell Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University Olomouc, Šlechtitelů 27, 783 71 Olomouc, Czech Republic
| | - Jasim Basheer
- Department of Cell Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University Olomouc, Šlechtitelů 27, 783 71 Olomouc, Czech Republic
| | - Cintia Marchetti
- Centre of the Region Haná for Biotechnological and Agricultural Research, Czech Advanced Technology and Research Institute, Palacký University Olomouc, Šlechtitelů 27, 783 71 Olomouc, Czech Republic
| | - Olga Šamajová
- Department of Cell Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University Olomouc, Šlechtitelů 27, 783 71 Olomouc, Czech Republic
| | - Lenka Kuběnová
- Department of Cell Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University Olomouc, Šlechtitelů 27, 783 71 Olomouc, Czech Republic
| | - Jozef Šamaj
- Department of Cell Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University Olomouc, Šlechtitelů 27, 783 71 Olomouc, Czech Republic
- Author for communication:
| |
Collapse
|
26
|
Aliaga Fandino AC, Hardtke CS. Auxin transport in developing protophloem: A case study in canalization. JOURNAL OF PLANT PHYSIOLOGY 2022; 269:153594. [PMID: 34953411 DOI: 10.1016/j.jplph.2021.153594] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Revised: 11/03/2021] [Accepted: 12/14/2021] [Indexed: 06/14/2023]
Abstract
Spatiotemporal cues orchestrate the development of organs and cellular differentiation in multicellular organisms. For instance, in the root apical meristem an auxin gradient patterns the transition from stem cell maintenance to transit amplification and eventual differentiation. Among the proximal tissues generated by this growth apex, the early, so-called protophloem, is the first tissue to differentiate. This observation has been linked to increased auxin activity in the developing protophloem sieve element cell files as compared to the neighboring tissues. Here we review recent progress in the characterization of the unique mechanism by which auxin canalizes its activity in the developing protophloem and fine-tunes its own transport to guide proper timing of protophloem sieve element differentiation.
Collapse
Affiliation(s)
- Ana Cecilia Aliaga Fandino
- Department of Plant Molecular Biology, University of Lausanne, Biophore Building, 1015, Lausanne, Switzerland
| | - Christian S Hardtke
- Department of Plant Molecular Biology, University of Lausanne, Biophore Building, 1015, Lausanne, Switzerland.
| |
Collapse
|
27
|
Wang X, Han L, Yin H, Zhao Z, Cao H, Shang Z, Kang E. AtANN1 and AtANN2 are involved in phototropism of etiolated hypocotyls of Arabidopsis by regulating auxin distribution. AOB PLANTS 2022; 14:plab075. [PMID: 35079328 PMCID: PMC8782606 DOI: 10.1093/aobpla/plab075] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/12/2021] [Accepted: 12/15/2021] [Indexed: 06/14/2023]
Abstract
Phototropism is an essential response in some plant organs and features several signalling molecules involved in either photo-sensing or post-sensing responses. Annexins are involved in regulating plant growth and its responses to various stimuli. Here, we provide novel data showing that two members of the Annexin family in Arabidopsis thaliana, AtANN1 and AtANN2, may be involved in the phototropism of etiolated hypocotyls. In wild type, unilateral blue light (BL) induced a strong phototropic response, while red light (RL) only induced a weak response. The responses of single- or double-null mutants of the two annexins, including atann1, atann2 and atann1/atann2, were significantly weaker than those observed in wild type, indicating the involvement of AtANN1 and AtANN2 in BL-induced phototropism. Unilateral BL induced asymmetric distribution of DR5-GFP and PIN3-GFP fluorescence in hypocotyls; notably, fluorescent intensity on the shaded side was markedly stronger than that on the illuminated side. In etiolated atann1, atann2 or atann1/atann2 hypocotyls, unilateral BL-induced asymmetric distributions of DR5-GFP and PIN3-GFP were weakened or impaired. Herein, we suggest that during hypocotyls phototropic response, AtANN1 and AtANN2 may be involved in BL-stimulated signalling by regulating PIN3-charged auxin transport.
Collapse
Affiliation(s)
- Xiaoxu Wang
- Key Laboratory of Molecular and Cellular Biology of the Ministry of Education, College of Life Sciences, Hebei Normal University, Shijiazhuang 050024, China
- Department of Agricultural and Animal Engineering, Cangzhou Vocation College of Technology, Cangzhou 061001, China
| | - Lijuan Han
- Key Laboratory of Molecular and Cellular Biology of the Ministry of Education, College of Life Sciences, Hebei Normal University, Shijiazhuang 050024, China
| | - Hongmin Yin
- Key Laboratory of Molecular and Cellular Biology of the Ministry of Education, College of Life Sciences, Hebei Normal University, Shijiazhuang 050024, China
| | - Zhenping Zhao
- Key Laboratory of Molecular and Cellular Biology of the Ministry of Education, College of Life Sciences, Hebei Normal University, Shijiazhuang 050024, China
| | - Huishu Cao
- Key Laboratory of Molecular and Cellular Biology of the Ministry of Education, College of Life Sciences, Hebei Normal University, Shijiazhuang 050024, China
| | - Zhonglin Shang
- Key Laboratory of Molecular and Cellular Biology of the Ministry of Education, College of Life Sciences, Hebei Normal University, Shijiazhuang 050024, China
| | - Erfang Kang
- Key Laboratory of Molecular and Cellular Biology of the Ministry of Education, College of Life Sciences, Hebei Normal University, Shijiazhuang 050024, China
| |
Collapse
|
28
|
Colin L, Martin-Arevalillo R, Bovio S, Bauer A, Vernoux T, Caillaud MC, Landrein B, Jaillais Y. Imaging the living plant cell: From probes to quantification. THE PLANT CELL 2022; 34:247-272. [PMID: 34586412 PMCID: PMC8774089 DOI: 10.1093/plcell/koab237] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2021] [Accepted: 09/20/2021] [Indexed: 05/20/2023]
Abstract
At the center of cell biology is our ability to image the cell and its various components, either in isolation or within an organism. Given its importance, biological imaging has emerged as a field of its own, which is inherently highly interdisciplinary. Indeed, biologists rely on physicists and engineers to build new microscopes and imaging techniques, chemists to develop better imaging probes, and mathematicians and computer scientists for image analysis and quantification. Live imaging collectively involves all the techniques aimed at imaging live samples. It is a rapidly evolving field, with countless new techniques, probes, and dyes being continuously developed. Some of these new methods or reagents are readily amenable to image plant samples, while others are not and require specific modifications for the plant field. Here, we review some recent advances in live imaging of plant cells. In particular, we discuss the solutions that plant biologists use to live image membrane-bound organelles, cytoskeleton components, hormones, and the mechanical properties of cells or tissues. We not only consider the imaging techniques per se, but also how the construction of new fluorescent probes and analysis pipelines are driving the field of plant cell biology.
Collapse
Affiliation(s)
- Leia Colin
- Laboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, CNRS, INRAE, 69342 Lyon, France
| | - Raquel Martin-Arevalillo
- Laboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, CNRS, INRAE, 69342 Lyon, France
| | - Simone Bovio
- Laboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, CNRS, INRAE, 69342 Lyon, France
- LYMIC-PLATIM imaging and microscopy core facility, Univ Lyon, SFR Biosciences, ENS de Lyon, Inserm US8, CNRS UMS3444, UCBL-50 Avenue Tony Garnier, 69007 Lyon, France
| | - Amélie Bauer
- Laboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, CNRS, INRAE, 69342 Lyon, France
| | - Teva Vernoux
- Laboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, CNRS, INRAE, 69342 Lyon, France
| | - Marie-Cecile Caillaud
- Laboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, CNRS, INRAE, 69342 Lyon, France
| | - Benoit Landrein
- Laboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, CNRS, INRAE, 69342 Lyon, France
| | | |
Collapse
|
29
|
Aniento F, Sánchez de Medina Hernández V, Dagdas Y, Rojas-Pierce M, Russinova E. Molecular mechanisms of endomembrane trafficking in plants. THE PLANT CELL 2022; 34:146-173. [PMID: 34550393 PMCID: PMC8773984 DOI: 10.1093/plcell/koab235] [Citation(s) in RCA: 44] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Accepted: 09/12/2021] [Indexed: 05/10/2023]
Abstract
Endomembrane trafficking is essential for all eukaryotic cells. The best-characterized membrane trafficking organelles include the endoplasmic reticulum (ER), Golgi apparatus, early and recycling endosomes, multivesicular body, or late endosome, lysosome/vacuole, and plasma membrane. Although historically plants have given rise to cell biology, our understanding of membrane trafficking has mainly been shaped by the much more studied mammalian and yeast models. Whereas organelles and major protein families that regulate endomembrane trafficking are largely conserved across all eukaryotes, exciting variations are emerging from advances in plant cell biology research. In this review, we summarize the current state of knowledge on plant endomembrane trafficking, with a focus on four distinct trafficking pathways: ER-to-Golgi transport, endocytosis, trans-Golgi network-to-vacuole transport, and autophagy. We acknowledge the conservation and commonalities in the trafficking machinery across species, with emphasis on diversity and plant-specific features. Understanding the function of organelles and the trafficking machinery currently nonexistent in well-known model organisms will provide great opportunities to acquire new insights into the fundamental cellular process of membrane trafficking.
Collapse
Affiliation(s)
| | - Víctor Sánchez de Medina Hernández
- Gregor Mendel Institute, Austrian Academy of Sciences, Vienna BioCenter, 1030 Vienna, Austria
- Vienna BioCenter PhD Program, Doctoral School of the University of Vienna and Medical University of Vienna, A-1030, Vienna, Austria
| | | | | | | |
Collapse
|
30
|
Marhava P. Recent developments in the understanding of PIN polarity. THE NEW PHYTOLOGIST 2022; 233:624-630. [PMID: 34882802 DOI: 10.1111/nph.17867] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2021] [Accepted: 10/05/2021] [Indexed: 05/20/2023]
Abstract
Polar localization of PIN-FORMED proteins (PINs) at the plasma membrane is essential for plant development as they direct the transport of phytohormone auxin between cells. PIN polar localization to certain sides of a given cell is dynamic, strictly regulated and provides directionality to auxin flow. Signals that act upstream to control subcellular PIN localization modulate auxin distribution, thereby regulating diverse aspects of plant development. Here I summarize the current understanding of mechanisms by which PIN polarity is established, maintained and rearranged to provide a glimpse into the complexity of PIN polarity.
Collapse
Affiliation(s)
- Petra Marhava
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre (UPSC), University of Agricultural Sciences (SLU), 90183, Umeå, Sweden
| |
Collapse
|
31
|
Kawai T, Akahoshi R, Shelley IJ, Kojima T, Sato M, Tsuji H, Inukai Y. Auxin Distribution in Lateral Root Primordium Development Affects the Size and Lateral Root Diameter of Rice. FRONTIERS IN PLANT SCIENCE 2022; 13:834378. [PMID: 35498720 PMCID: PMC9043952 DOI: 10.3389/fpls.2022.834378] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Accepted: 03/07/2022] [Indexed: 05/11/2023]
Abstract
Lateral roots (LRs) occupy a large part of the root system and play a central role in plant water and nutrient uptake. Monocot plants, such as rice, produce two types of LRs: the S-type (short and thin) and the L-type (long, thick, and capable of further branching). Because of the ability to produce higher-order branches, the L-type LR formation contributes to efficient root system expansion. Auxin plays a major role in regulating the root system development, but its involvement in developing different types of LRs is largely unknown. Here, we show that auxin distribution is involved in regulating LR diameter. Dynamin-related protein (DRP) genes were isolated as causative genes of the mutants with increased L-type LR number and diameter than wild-type (WT). In the drp mutants, reduced endocytic activity was detected in rice protoplast and LRs with a decreased OsPIN1b-GFP endocytosis in the protoplast. Analysis of auxin distribution using auxin-responsive promoter DR5 revealed the upregulated auxin signaling in L-type LR primordia (LRP) of the WT and the mutants. The application of polar auxin transport inhibitors enhanced the effect of exogenous auxin to increase LR diameter with upregulated auxin signaling in the basal part of LRP. Inducible repression of auxin signaling in the mOsIAA3-GR system suppressed the increase in LR diameter after root tip excision, suggesting a positive role of auxin signaling in LR diameter increase. A positive regulator of LR diameter, OsWOX10, was auxin-inducible and upregulated in the drp mutants more than the WT, and revealed as a potential target of ARF transcriptional activator. Therefore, auxin signaling upregulation in LRP, especially at the basal part, induces OsWOX10 expression, increasing LR diameter.
Collapse
Affiliation(s)
- Tsubasa Kawai
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan
- School of Agriculture and Environment, The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, Australia
| | - Ryosuke Akahoshi
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan
| | - Israt J. Shelley
- International Center for Research and Education in Agriculture, Nagoya University, Nagoya, Japan
- Department of Crop Botany, Bangladesh Agricultural University, Mymensingh, Bangladesh
| | - Takaaki Kojima
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan
| | - Moeko Sato
- Kihara Institute for Biological Research, Yokohama City University, Yokohama, Japan
| | - Hiroyuki Tsuji
- Kihara Institute for Biological Research, Yokohama City University, Yokohama, Japan
| | - Yoshiaki Inukai
- International Center for Research and Education in Agriculture, Nagoya University, Nagoya, Japan
- *Correspondence: Yoshiaki Inukai,
| |
Collapse
|
32
|
McKenna JF. Quantifying the Organization and Dynamics of the Plant Plasma Membrane Across Scales Using Light Microscopy. Methods Mol Biol 2022; 2457:233-251. [PMID: 35349144 DOI: 10.1007/978-1-0716-2132-5_15] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The plant cell surface continuum is composed of the cell wall, plasma membrane, and cytoskeleton. Plasmodesmata are specialized channels in the cell wall allowing intercellular communication and resource distribution. Proteins within these organelles play fundamental roles in development, perception of the external environment, and resource acquisition. Therefore, an understanding of protein dynamics and organization within the membrane and plasmodesmata is of fundamental importance to understanding both how plants develop as well as perceive the myriad of external stimuli they experience and initiate appropriate downstream responses. In this chapter, I will describe protocols for quantifying the dynamics and organization of the plasma membrane and plasmodesmata proteins across scales. The protocols described below allow researchers to determine bulk protein mobility within the membrane using fluorescence recovery after photobleaching (FRAP), imaging, and quantification of nanodomain size (with Airyscan confocal microscopy) and determining the dynamics of these nanodomains at the single particle level using total internal reflection (TIRF) single particle imaging.
Collapse
Affiliation(s)
- Joseph F McKenna
- School of Life Sciences, University of Warwick, Coventry, UK.
- Oxford Brookes University, Gypsy Lane, UK.
| |
Collapse
|
33
|
Martinière A, Zelazny E. Membrane nanodomains and transport functions in plant. PLANT PHYSIOLOGY 2021; 187:1839-1855. [PMID: 35235669 PMCID: PMC8644385 DOI: 10.1093/plphys/kiab312] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Accepted: 06/16/2021] [Indexed: 05/25/2023]
Abstract
Far from a homogeneous environment, biological membranes are highly structured with lipids and proteins segregating in domains of different sizes and dwell times. In addition, membranes are highly dynamics especially in response to environmental stimuli. Understanding the impact of the nanoscale organization of membranes on cellular functions is an outstanding question. Plant channels and transporters are tightly regulated to ensure proper cell nutrition and signaling. Increasing evidence indicates that channel and transporter nano-organization within membranes plays an important role in these regulation mechanisms. Here, we review recent advances in the field of ion, water, but also hormone transport in plants, focusing on protein organization within plasma membrane nanodomains and its cellular and physiological impacts.
Collapse
Affiliation(s)
| | - Enric Zelazny
- BPMP, Univ Montpellier, CNRS, INRAE, Institut Agro, Montpellier, France
| |
Collapse
|
34
|
Lee H, Ganguly A, Baik S, Cho HT. Calcium-dependent protein kinase 29 modulates PIN-FORMED polarity and Arabidopsis development via its own phosphorylation code. THE PLANT CELL 2021; 33:3513-3531. [PMID: 34402905 PMCID: PMC8566293 DOI: 10.1093/plcell/koab207] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Accepted: 08/12/2021] [Indexed: 05/15/2023]
Abstract
PIN-FORMED (PIN)-mediated polar auxin transport (PAT) is involved in key developmental processes in plants. Various internal and external cues influence plant development via the modulation of intracellular PIN polarity and, thus, the direction of PAT, but the mechanisms underlying these processes remain largely unknown. PIN proteins harbor a hydrophilic loop (HL) that has important regulatory functions; here, we used the HL as bait in protein pulldown screening for modulators of intracellular PIN trafficking in Arabidopsis thaliana. Calcium-dependent protein kinase 29 (CPK29), a Ca2+-dependent protein kinase, was identified and shown to phosphorylate specific target residues on the PIN-HL that were not phosphorylated by other kinases. Furthermore, loss of CPK29 or mutations of the phospho-target residues in PIN-HLs significantly compromised intracellular PIN trafficking and polarity, causing defects in PIN-mediated auxin redistribution and biological processes such as lateral root formation, root twisting, hypocotyl gravitropism, phyllotaxis, and reproductive development. These findings indicate that CPK29 directly interprets Ca2+ signals from internal and external triggers, resulting in the modulation of PIN trafficking and auxin responses.
Collapse
Affiliation(s)
- Hyodong Lee
- Department of Biological Sciences, Seoul National University, Seoul 08826, Korea
| | - Anindya Ganguly
- Department of Biological Sciences, Seoul National University, Seoul 08826, Korea
| | - Song Baik
- Department of Biological Sciences, Seoul National University, Seoul 08826, Korea
| | - Hyung-Taeg Cho
- Department of Biological Sciences, Seoul National University, Seoul 08826, Korea
- Author for correspondence:
| |
Collapse
|
35
|
Marconi M, Gallemi M, Benkova E, Wabnik K. A coupled mechano-biochemical model for cell polarity guided anisotropic root growth. eLife 2021; 10:72132. [PMID: 34723798 PMCID: PMC8716106 DOI: 10.7554/elife.72132] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2021] [Accepted: 10/26/2021] [Indexed: 11/21/2022] Open
Abstract
Plants develop new organs to adjust their bodies to dynamic changes in the environment. How independent organs achieve anisotropic shapes and polarities is poorly understood. To address this question, we constructed a mechano-biochemical model for Arabidopsis root meristem growth that integrates biologically plausible principles. Computer model simulations demonstrate how differential growth of neighboring tissues results in the initial symmetry-breaking leading to anisotropic root growth. Furthermore, the root growth feeds back on a polar transport network of the growth regulator auxin. Model, predictions are in close agreement with in vivo patterns of anisotropic growth, auxin distribution, and cell polarity, as well as several root phenotypes caused by chemical, mechanical, or genetic perturbations. Our study demonstrates that the combination of tissue mechanics and polar auxin transport organizes anisotropic root growth and cell polarities during organ outgrowth. Therefore, a mobile auxin signal transported through immobile cells drives polarity and growth mechanics to coordinate complex organ development.
Collapse
Affiliation(s)
- Marco Marconi
- CBGP Centro de Biotecnologia y Genomica de Plantas UPM-INIA, Pozuelo de Alarcón, Spain
| | - Marcal Gallemi
- Institute of Science and Technology (IST), Klosterneuburg, Austria
| | - Eva Benkova
- Institute of Science and Technology (IST), Klosterneuburg, Austria
| | - Krzysztof Wabnik
- CBGP Centro de Biotecnologia y Genomica de Plantas UPM-INIA, Pozuelo de Alarcón, Spain
| |
Collapse
|
36
|
Ma Y, Wolf S, Lohmann JU. Casting the Net-Connecting Auxin Signaling to the Plant Genome. Cold Spring Harb Perspect Biol 2021; 13:a040006. [PMID: 33903151 PMCID: PMC8559546 DOI: 10.1101/cshperspect.a040006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Auxin represents one of the most potent and most versatile hormonal signals in the plant kingdom. Built on a simple core of only a few dedicated components, the auxin signaling system plays important roles for diverse aspects of plant development, physiology, and defense. Key to the diversity of context-dependent functional outputs generated by cells in response to this small molecule are gene duplication events and sub-functionalization of signaling components on the one hand, and a deep embedding of the auxin signaling system into complex regulatory networks on the other hand. Together, these evolutionary innovations provide the mechanisms to allow each cell to display a highly specific auxin response that suits its individual requirements. In this review, we discuss the regulatory networks connecting auxin with a large number of diverse pathways at all relevant levels of the signaling system ranging from biosynthesis to transcriptional response.
Collapse
Affiliation(s)
- Yanfei Ma
- Department of Stem Cell Biology, Centre for Organismal Studies, Heidelberg University, D-69120 Heidelberg, Germany
| | - Sebastian Wolf
- Cell Wall Signalling Group, Centre for Organismal Studies, Heidelberg University, D-69120 Heidelberg, Germany
| | - Jan U Lohmann
- Department of Stem Cell Biology, Centre for Organismal Studies, Heidelberg University, D-69120 Heidelberg, Germany
| |
Collapse
|
37
|
Pozhvanov G, Sharova E, Medvedev S. Microgravity modelling by two-axial clinorotation leads to scattered organisation of cytoskeleton in Arabidopsis seedlings. FUNCTIONAL PLANT BIOLOGY : FPB 2021; 48:1062-1073. [PMID: 34372965 DOI: 10.1071/fp20225] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2020] [Accepted: 06/23/2021] [Indexed: 06/13/2023]
Abstract
Proper plant development in a closed ecosystem under weightlessness will be crucial for the success of future space missions. To supplement spaceflight experiments, such conditions of microgravity are modelled on Earth using a two-axial (2A) clinorotation, and in several fundamental studies resulted in the data on proteome and metabolome adjustments, embryo development, cell cycle regulation, etc. Nevertheless, our understanding of the cytoskeleton responses to the microgravity is still limited. In the present work, we study the adjustment of actin microfilaments (MFs) and microtubules (MTs) in Arabidopsis thaliana (L.) Heynh. seedlings under 2A clinorotation. Modelled microgravity resulted in not only the alteration of seedlings phenotype, but also a transient increase of the hydrogen peroxide level and in the cytoskeleton adjustment. Using GFP-fABD2 and Lifeact-Venus transgenic lines, we demonstrate that MFs became 'scattered' in elongating root and hypocotyl cells under 2A clinorotation. In addition, in GFP-MAP4 and GFP-TUA6 lines the tubulin cytoskeleton had higher fractions of transverse MTs under 2A clinorotation. Remarkably, the first static gravistimulation of continuously clinorotated seedlings reverted MF organisation to a longitudinal one in roots within 30 min. Our data suggest that the 'scattered' organisation of MFs in microgravity can serve as a good basis for the rapid cytoskeleton conversion to a 'longitudinal' structure under the gravity force.
Collapse
Affiliation(s)
- Gregory Pozhvanov
- Department of Plant Physiology and Biochemistry, Faculty of Biology, St. Petersburg State University, Universitetskaya emb. 7-9, St. Petersburg 199034, Russian Federation; and Laboratory of Analytical Phytochemistry, Komarov Botanical Institute, Russian Academy of Sciences, Professora Popova st. 2, St. Petersburg 197376, Russian Federation; and Herzen State Pedagogical University of Russia, 48 Moika Emb., St. Petersburg 191186, Russian Federation; and Corresponding authors. Emails: ;
| | - Elena Sharova
- Department of Plant Physiology and Biochemistry, Faculty of Biology, St. Petersburg State University, Universitetskaya emb. 7-9, St. Petersburg 199034, Russian Federation
| | - Sergei Medvedev
- Department of Plant Physiology and Biochemistry, Faculty of Biology, St. Petersburg State University, Universitetskaya emb. 7-9, St. Petersburg 199034, Russian Federation; and Corresponding authors. Emails: ;
| |
Collapse
|
38
|
Parveen S, Rahman A. Actin Isovariant ACT7 Modulates Root Thermomorphogenesis by Altering Intracellular Auxin Homeostasis. Int J Mol Sci 2021; 22:7749. [PMID: 34299366 PMCID: PMC8306570 DOI: 10.3390/ijms22147749] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2021] [Revised: 07/11/2021] [Accepted: 07/18/2021] [Indexed: 12/16/2022] Open
Abstract
High temperature stress is one of the most threatening abiotic stresses for plants limiting the crop productivity world-wide. Altered developmental responses of plants to moderate-high temperature has been shown to be linked to the intracellular auxin homeostasis regulated by both auxin biosynthesis and transport. Trafficking of the auxin carrier proteins plays a major role in maintaining the cellular auxin homeostasis. The intracellular trafficking largely relies on the cytoskeletal component, actin, which provides track for vesicle movement. Different classes of actin and the isovariants function in regulating various stages of plant development. Although high temperature alters the intracellular trafficking, the role of actin in this process remains obscure. Using isovariant specific vegetative class actin mutants, here we demonstrate that ACTIN 7 (ACT7) isovariant plays an important role in regulating the moderate-high temperature response in Arabidopsis root. Loss of ACT7, but not ACT8 resulted in increased inhibition of root elongation under prolonged moderate-high temperature. Consistently, kinematic analysis revealed a drastic reduction in cell production rate and cell elongation in act7-4 mutant under high temperature. Quantification of actin dynamicity reveals that prolonged moderate-high temperature modulates bundling along with orientation and parallelness of filamentous actin in act7-4 mutant. The hypersensitive response of act7-4 mutant was found to be linked to the altered intracellular auxin distribution, resulted from the reduced abundance of PIN-FORMED PIN1 and PIN2 efflux carriers. Collectively, these results suggest that vegetative class actin isovariant, ACT7 modulates the long-term moderate-high temperature response in Arabidopsis root.
Collapse
Affiliation(s)
- Sumaya Parveen
- United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan;
| | - Abidur Rahman
- United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan;
- Department of Plant Bio Sciences, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan
- Agri-Innovation Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan
| |
Collapse
|
39
|
Deng J, Wang X, Liu Z, Mao T. The microtubule-associated protein WDL4 modulates auxin distribution to promote apical hook opening in Arabidopsis. THE PLANT CELL 2021; 33:1927-1944. [PMID: 33730147 PMCID: PMC8290285 DOI: 10.1093/plcell/koab080] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2021] [Accepted: 03/09/2021] [Indexed: 05/08/2023]
Abstract
The unique apical hook in dicotyledonous plants protects the shoot apical meristem and cotyledons when seedlings emerge through the soil. Its formation involves differential cell growth under the coordinated control of plant hormones, especially ethylene and auxin. Microtubules are essential players in plant cell growth that are regulated by multiple microtubule-associated proteins (MAPs). However, the role and underlying mechanisms of MAP-microtubule modules in differential cell growth are poorly understood. In this study, we found that the previously uncharacterized Arabidopsis MAP WAVE-DAMPENED2-LIKE4 (WDL4) protein plays a positive role in apical hook opening. WDL4 exhibits a temporal expression pattern during hook development in dark-grown seedlings that is directly regulated by ethylene signaling. WDL4 mutants showed a delayed hook opening phenotype while overexpression of WDL4 resulted in enhanced hook opening. In particular, wdl4-1 mutants exhibited stronger auxin accumulation in the concave side of the apical hook. Furthermore, the regulation of the auxin maxima and trafficking of the auxin efflux carriers PIN-FORMED1 (PIN1) and PIN7 in the hook region is critical for WDL4-mediated hook opening. Together, our study demonstrates that WDL4 positively regulates apical hook opening by modulating auxin distribution, thus unraveling a mechanism for MAP-mediated differential plant cell growth.
Collapse
Affiliation(s)
- Jia Deng
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China
| | - Xiangfeng Wang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China
| | - Ziqiang Liu
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China
| | - Tonglin Mao
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China
- Author for correspondence:
| |
Collapse
|
40
|
Yanagisawa M, Poitout A, Otegui MS. Arabidopsis vascular complexity and connectivity controls PIN-FORMED1 dynamics and lateral vein patterning during embryogenesis. Development 2021; 148:dev197210. [PMID: 34137447 DOI: 10.1242/dev.197210] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Accepted: 06/14/2021] [Indexed: 11/20/2022]
Abstract
Arabidopsis VASCULATURE COMPLEXITY AND CONNECTIVITY (VCC) is a plant-specific transmembrane protein that controls the development of veins in cotyledons. Here, we show that the expression and localization of the auxin efflux carrier PIN-FORMED1 (PIN1) is altered in vcc developing cotyledons and that overexpression of PIN1-GFP partially rescues vascular defects of vcc in a dosage-dependent manner. Genetic analyses suggest that VCC and PINOID (PID), a kinase that regulates PIN1 polarity, are both required for PIN1-mediated control of vasculature development. VCC expression is upregulated by auxin, likely as part of a positive feedback loop for the progression of vascular development. VCC and PIN1 localized to the plasma membrane in pre-procambial cells but were actively redirected to vacuoles in procambial cells for degradation. In the vcc mutant, PIN1 failed to properly polarize in pre-procambial cells during the formation of basal strands, and instead, it was prematurely degraded in vacuoles. VCC plays a role in the localization and stability of PIN1, which is crucial for the transition of pre-procambial cells into procambial cells that are involved in the formation of basal lateral strands in embryonic cotyledons.
Collapse
Affiliation(s)
- Makoto Yanagisawa
- Department of Botany, University of Wisconsin-Madison, Madison, WI 53706, USA
- Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI 53706, USA
| | - Arthur Poitout
- Department of Botany, University of Wisconsin-Madison, Madison, WI 53706, USA
- BPMP, University of Montpellier, CNRS, INRAE, Institut Agro, Montpellier 34060, France
| | - Marisa S Otegui
- Department of Botany, University of Wisconsin-Madison, Madison, WI 53706, USA
- Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI 53706, USA
| |
Collapse
|
41
|
Narasimhan M, Gallei M, Tan S, Johnson A, Verstraeten I, Li L, Rodriguez L, Han H, Himschoot E, Wang R, Vanneste S, Sánchez-Simarro J, Aniento F, Adamowski M, Friml J. Systematic analysis of specific and nonspecific auxin effects on endocytosis and trafficking. PLANT PHYSIOLOGY 2021; 186:1122-1142. [PMID: 33734402 PMCID: PMC8195513 DOI: 10.1093/plphys/kiab134] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Accepted: 01/23/2021] [Indexed: 05/08/2023]
Abstract
The phytohormone auxin and its directional transport through tissues are intensively studied. However, a mechanistic understanding of auxin-mediated feedback on endocytosis and polar distribution of PIN auxin transporters remains limited due to contradictory observations and interpretations. Here, we used state-of-the-art methods to reexamine the auxin effects on PIN endocytic trafficking. We used high auxin concentrations or longer treatments versus lower concentrations and shorter treatments of natural indole-3-acetic acid (IAA) and synthetic naphthalene acetic acid (NAA) auxins to distinguish between specific and nonspecific effects. Longer treatments of both auxins interfere with Brefeldin A-mediated intracellular PIN2 accumulation and also with general aggregation of endomembrane compartments. NAA treatment decreased the internalization of the endocytic tracer dye, FM4-64; however, NAA treatment also affected the number, distribution, and compartment identity of the early endosome/trans-Golgi network, rendering the FM4-64 endocytic assays at high NAA concentrations unreliable. To circumvent these nonspecific effects of NAA and IAA affecting the endomembrane system, we opted for alternative approaches visualizing the endocytic events directly at the plasma membrane (PM). Using total internal reflection fluorescence microscopy, we saw no significant effects of IAA or NAA treatments on the incidence and dynamics of clathrin foci, implying that these treatments do not affect the overall endocytosis rate. However, both NAA and IAA at low concentrations rapidly and specifically promoted endocytosis of photo-converted PIN2 from the PM. These analyses identify a specific effect of NAA and IAA on PIN2 endocytosis, thus, contributing to its polarity maintenance and furthermore illustrate that high auxin levels have nonspecific effects on trafficking and endomembrane compartments.
Collapse
Affiliation(s)
| | - Michelle Gallei
- Institute of Science and Technology (IST), Klosterneuburg 3400, Austria
| | - Shutang Tan
- Institute of Science and Technology (IST), Klosterneuburg 3400, Austria
| | - Alexander Johnson
- Institute of Science and Technology (IST), Klosterneuburg 3400, Austria
| | - Inge Verstraeten
- Institute of Science and Technology (IST), Klosterneuburg 3400, Austria
| | - Lanxin Li
- Institute of Science and Technology (IST), Klosterneuburg 3400, Austria
| | - Lesia Rodriguez
- Institute of Science and Technology (IST), Klosterneuburg 3400, Austria
| | - Huibin Han
- Institute of Science and Technology (IST), Klosterneuburg 3400, Austria
| | - Ellie Himschoot
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium
| | - Ren Wang
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium
| | - Steffen Vanneste
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Judit Sánchez-Simarro
- Departamento de Bioquímica y Biología Molecular, Facultad de Farmacia, Universitat de Valencia, 46100 Burjassot, Spain
| | - Fernando Aniento
- Departamento de Bioquímica y Biología Molecular, Facultad de Farmacia, Universitat de Valencia, 46100 Burjassot, Spain
| | - Maciek Adamowski
- Institute of Science and Technology (IST), Klosterneuburg 3400, Austria
| | - Jiří Friml
- Institute of Science and Technology (IST), Klosterneuburg 3400, Austria
| |
Collapse
|
42
|
Lavania D, Linh NM, Scarpella E. Of Cells, Strands, and Networks: Auxin and the Patterned Formation of the Vascular System. Cold Spring Harb Perspect Biol 2021; 13:cshperspect.a039958. [PMID: 33431582 DOI: 10.1101/cshperspect.a039958] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Throughout plant development, vascular cells continually form from within a population of seemingly equivalent cells. Vascular cells connect end to end to form continuous strands, and vascular strands connect at both or either end to form networks of exquisite complexity and mesmerizing beauty. Here we argue that experimental evidence gained over the past few decades implicates the plant hormone auxin-its production, transport, perception, and response-in all the steps that lead to the patterned formation of the plant vascular system, from the formation of vascular cells to their connection into vascular networks. We emphasize the organizing principles of the cell- and tissue-patterning process, rather than its molecular subtleties. In the picture that emerges, cells compete for an auxin-dependent, cell-polarizing signal; positive feedback between cell polarization and cell-to-cell movement of the polarizing signal leads to gradual selection of cell files; and selected cell files differentiate into vascular strands that drain the polarizing signal from the neighboring cells. Although the logic of the patterning process has become increasingly clear, the molecular details remain blurry; the future challenge will be to bring them into razor-sharp focus.
Collapse
Affiliation(s)
- Dhruv Lavania
- Department of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2E9, Canada
| | - Nguyen Manh Linh
- Department of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2E9, Canada
| | - Enrico Scarpella
- Department of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2E9, Canada
| |
Collapse
|
43
|
Arora D, Damme DV. Motif-based endomembrane trafficking. PLANT PHYSIOLOGY 2021; 186:221-238. [PMID: 33605419 PMCID: PMC8154067 DOI: 10.1093/plphys/kiab077] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 02/17/2021] [Indexed: 05/08/2023]
Abstract
Endomembrane trafficking, which allows proteins and lipids to flow between the different endomembrane compartments, largely occurs by vesicle-mediated transport. Transmembrane proteins intended for transport are concentrated into a vesicle or carrier by undulation of a donor membrane. This is followed by vesicle scission, uncoating, and finally, fusion at the target membrane. Three major trafficking pathways operate inside eukaryotic cells: anterograde, retrograde, and endocytic. Each pathway involves a unique set of machinery and coat proteins that pack the transmembrane proteins, along with their associated lipids, into specific carriers. Adaptor and coatomer complexes are major facilitators that function in anterograde transport and in endocytosis. These complexes recognize the transmembrane cargoes destined for transport and recruit the coat proteins that help form the carriers. These complexes use either linear motifs or posttranslational modifications to recognize the cargoes, which are then packaged and delivered along the trafficking pathways. In this review, we focus on the different trafficking complexes that share a common evolutionary branch in Arabidopsis (Arabidopsis thaliana), and we discuss up-to-date knowledge about the cargo recognition motifs they use.
Collapse
Affiliation(s)
- Deepanksha Arora
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent 9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent 9052, Belgium
| | - Daniёl Van Damme
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent 9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent 9052, Belgium
- Author for communication:
| |
Collapse
|
44
|
Abstract
PIN-FORMED (PIN) polar protein localization directs transport of the growth and developmental regulator auxin in plants. Once established after cytokinesis, PIN polarity requires maintenance. Now, direct interactions between PIN, MAB4/MEL and PID proteins suggest self-reinforced maintenance of PIN polarity through limiting lateral diffusion.
Collapse
Affiliation(s)
- Michael Sauer
- Institute of Biochemistry and Biology, Plant Physiology, University of Potsdam, Karl-Liebknecht-Str. 24-25, Building 20, DE-14476 Potsdam-Golm, Germany
| | - Markus Grebe
- Institute of Biochemistry and Biology, Plant Physiology, University of Potsdam, Karl-Liebknecht-Str. 24-25, Building 20, DE-14476 Potsdam-Golm, Germany.
| |
Collapse
|
45
|
Smokvarska M, Jaillais Y, Martinière A. Function of membrane domains in rho-of-plant signaling. PLANT PHYSIOLOGY 2021; 185:663-681. [PMID: 33793925 PMCID: PMC8133555 DOI: 10.1093/plphys/kiaa082] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Accepted: 11/25/2020] [Indexed: 05/18/2023]
Abstract
In a crowded environment, establishing interactions between different molecular partners can take a long time. Biological membranes have solved this issue, as they simultaneously are fluid and possess compartmentalized domains. This nanoscale organization of the membrane is often based on weak, local, and multivalent interactions between lipids and proteins. However, from local interactions at the nanoscale, different functional properties emerge at the higher scale, and these are critical to regulate and integrate cellular signaling. Rho of Plant (ROP) proteins are small guanosine triphosphate hydrolase enzymes (GTPases) involved in hormonal, biotic, and abiotic signaling, as well as fundamental cell biological properties such as polarity, vesicular trafficking, and cytoskeleton dynamics. Association with the membrane is essential for ROP function, as well as their precise targeting within micrometer-sized polar domains (i.e. microdomains) and nanometer-sized clusters (i.e. nanodomains). Here, we review our current knowledge about the formation and the maintenance of the ROP domains in membranes. Furthermore, we propose a model for ROP membrane targeting and discuss how the nanoscale organization of ROPs in membranes could determine signaling parameters like signal specificity, amplification, and integration.
Collapse
Affiliation(s)
- Marija Smokvarska
- BPMP, CNRS, INRAE, Univ Montpellier, Montpellier SupAgro, 34060 Montpellier, France
| | - Yvon Jaillais
- Laboratoire Reproduction et Développement des Plantes, CNRS, INRAE, Université de Lyon, ENS de Lyon, UCB Lyon 1, F-69342 Lyon, France
| | - Alexandre Martinière
- BPMP, CNRS, INRAE, Univ Montpellier, Montpellier SupAgro, 34060 Montpellier, France
- Author for communication:
| |
Collapse
|
46
|
Liu Z, Gao J, Cui Y, Klumpe S, Xiang Y, Erdmann PS, Jiang L. Membrane imaging in the plant endomembrane system. PLANT PHYSIOLOGY 2021; 185:562-576. [PMID: 33793889 PMCID: PMC8133680 DOI: 10.1093/plphys/kiaa040] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Accepted: 08/11/2020] [Indexed: 05/10/2023]
Abstract
Recent studies on membrane imaging in the plant endomembrane system by 2-D/3-D CLSM and TEM provide future perspectives of whole-cell ET and cryo-FIB-aided cryo-ET analysis.
Collapse
Affiliation(s)
- Zhiqi Liu
- State Key Laboratory of Agrobiotechnology, School of Life Sciences, Centre for Cell and Developmental Biology, The Chinese University of Hong Kong, Shatin, Hong Kong
| | - Jiayang Gao
- State Key Laboratory of Agrobiotechnology, School of Life Sciences, Centre for Cell and Developmental Biology, The Chinese University of Hong Kong, Shatin, Hong Kong
| | - Yong Cui
- State Key Laboratory of Agrobiotechnology, School of Life Sciences, Centre for Cell and Developmental Biology, The Chinese University of Hong Kong, Shatin, Hong Kong
| | - Sven Klumpe
- Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany
| | - Yun Xiang
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Philipp S Erdmann
- Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany
- Author for communication: (L.J.)
| | - Liwen Jiang
- State Key Laboratory of Agrobiotechnology, School of Life Sciences, Centre for Cell and Developmental Biology, The Chinese University of Hong Kong, Shatin, Hong Kong
- CUHK Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen 518057, China
- Author for communication: (L.J.)
| |
Collapse
|
47
|
Pařízková B, Žukauskaitė A, Vain T, Grones P, Raggi S, Kubeš MF, Kieffer M, Doyle SM, Strnad M, Kepinski S, Napier R, Doležal K, Robert S, Novák O. New fluorescent auxin probes visualise tissue-specific and subcellular distributions of auxin in Arabidopsis. THE NEW PHYTOLOGIST 2021; 230:535-549. [PMID: 33438224 DOI: 10.1111/nph.17183] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2020] [Accepted: 12/21/2020] [Indexed: 05/09/2023]
Abstract
In a world that will rely increasingly on efficient plant growth for sufficient food, it is important to learn about natural mechanisms of phytohormone action. In this work, the introduction of a fluorophore to an auxin molecule represents a sensitive and non-invasive method to directly visualise auxin localisation with high spatiotemporal resolution. The state-of-the-art multidisciplinary approaches of genetic and chemical biology analysis together with live cell imaging, liquid chromatography-mass spectrometry (LC-MS) and surface plasmon resonance (SPR) methods were employed for the characterisation of auxin-related biological activity, distribution and stability of the presented compounds in Arabidopsis thaliana. Despite partial metabolisation in vivo, these fluorescent auxins display an uneven and dynamic distribution leading to the formation of fluorescence maxima in tissues known to concentrate natural auxin, such as the concave side of the apical hook. Importantly, their distribution is altered in response to different exogenous stimuli in both roots and shoots. Moreover, we characterised the subcellular localisation of the fluorescent auxin analogues as being present in the endoplasmic reticulum and endosomes. Our work provides powerful tools to visualise auxin distribution within different plant tissues at cellular or subcellular levels and in response to internal and environmental stimuli during plant development.
Collapse
Affiliation(s)
- Barbora Pařízková
- Laboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, The Czech Academy of Sciences, Šlechtitelů 27, Olomouc, CZ-78371, Czech Republic
| | - Asta Žukauskaitė
- Laboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, The Czech Academy of Sciences, Šlechtitelů 27, Olomouc, CZ-78371, Czech Republic
| | - Thomas Vain
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences, Umeå, SE-90183, Sweden
| | - Peter Grones
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences, Umeå, SE-90183, Sweden
| | - Sara Raggi
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences, Umeå, SE-90183, Sweden
| | - Martin F Kubeš
- Laboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, The Czech Academy of Sciences, Šlechtitelů 27, Olomouc, CZ-78371, Czech Republic
- School of Life Sciences, The University of Warwick, Coventry, CV4 7AL, UK
| | - Martin Kieffer
- Centre for Plant Sciences, University of Leeds, Leeds, LS2 9JT, UK
| | - Siamsa M Doyle
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences, Umeå, SE-90183, Sweden
| | - Miroslav Strnad
- Laboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, The Czech Academy of Sciences, Šlechtitelů 27, Olomouc, CZ-78371, Czech Republic
| | - Stefan Kepinski
- Centre for Plant Sciences, University of Leeds, Leeds, LS2 9JT, UK
| | - Richard Napier
- School of Life Sciences, The University of Warwick, Coventry, CV4 7AL, UK
| | - Karel Doležal
- Laboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, The Czech Academy of Sciences, Šlechtitelů 27, Olomouc, CZ-78371, Czech Republic
- Department of Chemical Biology, Faculty of Science, Palacký University, Šlechtitelů 27, Olomouc, CZ-78371, Czech Republic
| | - Stéphanie Robert
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences, Umeå, SE-90183, Sweden
| | - Ondřej Novák
- Laboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, The Czech Academy of Sciences, Šlechtitelů 27, Olomouc, CZ-78371, Czech Republic
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences, Umeå, SE-90183, Sweden
| |
Collapse
|
48
|
Glanc M, Van Gelderen K, Hoermayer L, Tan S, Naramoto S, Zhang X, Domjan D, Včelařová L, Hauschild R, Johnson A, de Koning E, van Dop M, Rademacher E, Janson S, Wei X, Molnár G, Fendrych M, De Rybel B, Offringa R, Friml J. AGC kinases and MAB4/MEL proteins maintain PIN polarity by limiting lateral diffusion in plant cells. Curr Biol 2021; 31:1918-1930.e5. [PMID: 33705718 PMCID: PMC8112251 DOI: 10.1016/j.cub.2021.02.028] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2020] [Revised: 01/22/2021] [Accepted: 02/12/2021] [Indexed: 12/22/2022]
Abstract
Polar subcellular localization of the PIN exporters of the phytohormone auxin is a key determinant of directional, intercellular auxin transport and thus a central topic of both plant cell and developmental biology. Arabidopsis mutants lacking PID, a kinase that phosphorylates PINs, or the MAB4/MEL proteins of unknown molecular function display PIN polarity defects and phenocopy pin mutants, but mechanistic insights into how these factors convey PIN polarity are missing. Here, by combining protein biochemistry with quantitative live-cell imaging, we demonstrate that PINs, MAB4/MELs, and AGC kinases interact in the same complex at the plasma membrane. MAB4/MELs are recruited to the plasma membrane by the PINs and in concert with the AGC kinases maintain PIN polarity through limiting lateral diffusion-based escape of PINs from the polar domain. The PIN-MAB4/MEL-PID protein complex has self-reinforcing properties thanks to positive feedback between AGC kinase-mediated PIN phosphorylation and MAB4/MEL recruitment. We thus uncover the molecular mechanism by which AGC kinases and MAB4/MEL proteins regulate PIN localization and plant development. MAB4/MEL proteins are recruited to the plasma membrane by PINs PINs, MAB4/MELs, and AGC kinases directly interact in a multiprotein complex PIN phosphorylation and MAB4/MEL recruitment form a positive feedback loop MAB4/MELs and AGC kinases maintain PIN polarity by limiting PIN lateral diffusion
Collapse
Affiliation(s)
- Matouš Glanc
- Institute of Science and Technology Austria (IST Austria), 3400 Klosterneuburg, Austria; Department of Experimental Plant Biology, Faculty of Science, Charles University, 12844 Prague, Czechia; Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium; VIB Center for Plant Systems Biology, 9052 Ghent, Belgium
| | - Kasper Van Gelderen
- Plant Developmental Genetics, Institute of Biology Leiden, Leiden University, 2333 BE Leiden, the Netherlands; Plant Ecophysiology, Institute of Environmental Biology, Utrecht University, 3584 CH Utrecht, the Netherlands
| | - Lukas Hoermayer
- Institute of Science and Technology Austria (IST Austria), 3400 Klosterneuburg, Austria
| | - Shutang Tan
- Institute of Science and Technology Austria (IST Austria), 3400 Klosterneuburg, Austria
| | - Satoshi Naramoto
- Department of Biological Sciences, Faculty of Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
| | - Xixi Zhang
- Institute of Science and Technology Austria (IST Austria), 3400 Klosterneuburg, Austria
| | - David Domjan
- Institute of Science and Technology Austria (IST Austria), 3400 Klosterneuburg, Austria
| | - Ludmila Včelařová
- Institute of Science and Technology Austria (IST Austria), 3400 Klosterneuburg, Austria
| | - Robert Hauschild
- Institute of Science and Technology Austria (IST Austria), 3400 Klosterneuburg, Austria
| | - Alexander Johnson
- Institute of Science and Technology Austria (IST Austria), 3400 Klosterneuburg, Austria
| | - Edward de Koning
- Plant Developmental Genetics, Institute of Biology Leiden, Leiden University, 2333 BE Leiden, the Netherlands
| | - Maritza van Dop
- Plant Developmental Genetics, Institute of Biology Leiden, Leiden University, 2333 BE Leiden, the Netherlands
| | - Eike Rademacher
- Plant Developmental Genetics, Institute of Biology Leiden, Leiden University, 2333 BE Leiden, the Netherlands
| | - Stef Janson
- Plant Developmental Genetics, Institute of Biology Leiden, Leiden University, 2333 BE Leiden, the Netherlands
| | - Xiaoyu Wei
- Plant Developmental Genetics, Institute of Biology Leiden, Leiden University, 2333 BE Leiden, the Netherlands
| | - Gergely Molnár
- Institute of Science and Technology Austria (IST Austria), 3400 Klosterneuburg, Austria; Department of Applied Genetics and Cell Biology, University of Natural Resources and Life Sciences, (BOKU), 1190 Vienna, Austria
| | - Matyáš Fendrych
- Institute of Science and Technology Austria (IST Austria), 3400 Klosterneuburg, Austria; Department of Experimental Plant Biology, Faculty of Science, Charles University, 12844 Prague, Czechia
| | - Bert De Rybel
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium; VIB Center for Plant Systems Biology, 9052 Ghent, Belgium
| | - Remko Offringa
- Plant Developmental Genetics, Institute of Biology Leiden, Leiden University, 2333 BE Leiden, the Netherlands.
| | - Jiří Friml
- Institute of Science and Technology Austria (IST Austria), 3400 Klosterneuburg, Austria.
| |
Collapse
|
49
|
Konstantinova N, Korbei B, Luschnig C. Auxin and Root Gravitropism: Addressing Basic Cellular Processes by Exploiting a Defined Growth Response. Int J Mol Sci 2021; 22:ijms22052749. [PMID: 33803128 PMCID: PMC7963156 DOI: 10.3390/ijms22052749] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Revised: 03/04/2021] [Accepted: 03/06/2021] [Indexed: 12/14/2022] Open
Abstract
Root architecture and growth are decisive for crop performance and yield, and thus a highly topical research field in plant sciences. The root system of the model plant Arabidopsis thaliana is the ideal system to obtain insights into fundamental key parameters and molecular players involved in underlying regulatory circuits of root growth, particularly in responses to environmental stimuli. Root gravitropism, directional growth along the gravity, in particular represents a highly sensitive readout, suitable to study adjustments in polar auxin transport and to identify molecular determinants involved. This review strives to summarize and give an overview into the function of PIN-FORMED auxin transport proteins, emphasizing on their sorting and polarity control. As there already is an abundance of information, the focus lies in integrating this wealth of information on mechanisms and pathways. This overview of a highly dynamic and complex field highlights recent developments in understanding the role of auxin in higher plants. Specifically, it exemplifies, how analysis of a single, defined growth response contributes to our understanding of basic cellular processes in general.
Collapse
|
50
|
Ötvös K, Marconi M, Vega A, O’Brien J, Johnson A, Abualia R, Antonielli L, Montesinos JC, Zhang Y, Tan S, Cuesta C, Artner C, Bouguyon E, Gojon A, Friml J, Gutiérrez RA, Wabnik K, Benková E. Modulation of plant root growth by nitrogen source-defined regulation of polar auxin transport. EMBO J 2021; 40:e106862. [PMID: 33399250 PMCID: PMC7849315 DOI: 10.15252/embj.2020106862] [Citation(s) in RCA: 37] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2020] [Revised: 10/27/2020] [Accepted: 11/06/2020] [Indexed: 01/01/2023] Open
Abstract
Availability of the essential macronutrient nitrogen in soil plays a critical role in plant growth, development, and impacts agricultural productivity. Plants have evolved different strategies for sensing and responding to heterogeneous nitrogen distribution. Modulation of root system architecture, including primary root growth and branching, is among the most essential plant adaptions to ensure adequate nitrogen acquisition. However, the immediate molecular pathways coordinating the adjustment of root growth in response to distinct nitrogen sources, such as nitrate or ammonium, are poorly understood. Here, we show that growth as manifested by cell division and elongation is synchronized by coordinated auxin flux between two adjacent outer tissue layers of the root. This coordination is achieved by nitrate-dependent dephosphorylation of the PIN2 auxin efflux carrier at a previously uncharacterized phosphorylation site, leading to subsequent PIN2 lateralization and thereby regulating auxin flow between adjacent tissues. A dynamic computer model based on our experimental data successfully recapitulates experimental observations. Our study provides mechanistic insights broadening our understanding of root growth mechanisms in dynamic environments.
Collapse
Affiliation(s)
- Krisztina Ötvös
- Institute of Science and Technology (IST) AustriaKlosterneuburgAustria
- Bioresources UnitCenter for Health & BioresourcesAIT Austrian Institute of Technology GmbHTullnAustria
| | - Marco Marconi
- Centro de Biotecnología y Genómica de Plantas (CBGP, UPM‐INIA) Universidad Politécnica de Madrid (UPM)—Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)MadridSpain
| | - Andrea Vega
- Pontifical Catholic University of ChileSantiagoChile
| | - Jose O’Brien
- Pontifical Catholic University of ChileSantiagoChile
| | - Alexander Johnson
- Institute of Science and Technology (IST) AustriaKlosterneuburgAustria
| | - Rashed Abualia
- Institute of Science and Technology (IST) AustriaKlosterneuburgAustria
| | - Livio Antonielli
- Bioresources UnitCenter for Health & BioresourcesAIT Austrian Institute of Technology GmbHTullnAustria
| | | | - Yuzhou Zhang
- Institute of Science and Technology (IST) AustriaKlosterneuburgAustria
| | - Shutang Tan
- Institute of Science and Technology (IST) AustriaKlosterneuburgAustria
| | - Candela Cuesta
- Institute of Science and Technology (IST) AustriaKlosterneuburgAustria
| | - Christina Artner
- Institute of Science and Technology (IST) AustriaKlosterneuburgAustria
| | | | - Alain Gojon
- BPMPCNRSINRAEInstitut AgroUniv MontpellierMontpellierFrance
| | - Jirí Friml
- Institute of Science and Technology (IST) AustriaKlosterneuburgAustria
| | | | - Krzysztof Wabnik
- Centro de Biotecnología y Genómica de Plantas (CBGP, UPM‐INIA) Universidad Politécnica de Madrid (UPM)—Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)MadridSpain
| | - Eva Benková
- Institute of Science and Technology (IST) AustriaKlosterneuburgAustria
| |
Collapse
|