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Yang X, Sun E, Zhai H, Wang T, Wang S, Gao Y, Hou Q, Guan X, Li S, Li LF, Wu H, Luo Y, Li S, Sun Y, Zhao D, Li Y, Qiu HJ. The antibodies against the A137R protein drive antibody-dependent enhancement of African swine fever virus infection in porcine alveolar macrophages. Emerg Microbes Infect 2024; 13:2377599. [PMID: 38973388 PMCID: PMC11259084 DOI: 10.1080/22221751.2024.2377599] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Accepted: 07/04/2024] [Indexed: 07/09/2024]
Abstract
African swine fever virus (ASFV) is the causative agent of African swine fever (ASF), a highly contagious disease that can kill up to 100% of domestic pigs and wild boars. It has been shown that the pigs inoculated with some ASF vaccine candidates display more severe clinical signs and die earlier than do pigs not immunized. We hypothesize that antibody-dependent enhancement (ADE) of ASFV infection may be caused by the presence of some unidentified antibodies. In this study, we found that the ASFV-encoded structural protein A137R (pA137R) can be recognized by the anti-ASFV positive sera, indicating that the anti-pA137R antibodies are induced in the ASFV-infected pigs. Interestingly, our results demonstrated that the anti-pA137R antibodies produced in rabbits or pigs enhanced viral replication of different ASFV strains in primary porcine alveolar macrophages (PAMs), the target cells of ASFV. Mechanistic investigations revealed that anti-pA137R antibodies were able to promote the attachment of ASFV to PAMs and two types of Fc gamma receptors (FcγRs), FcγRII and FcγRIII, mediated the ADE of ASFV infection. Taken together, anti-pA137R antibodies are able to drive ASFV ADE in PAMs. These findings shed new light on the roles of anti-ASFV antibodies and have implications for the pathophysiology of the disease and the development of ASF vaccines.
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Affiliation(s)
- Xiaoke Yang
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, CAAS, Harbin, People’s Republic of China
| | - Encheng Sun
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, CAAS, Harbin, People’s Republic of China
- Institute of Western Agriculture, CAAS, Changji, People’s Republic of China
| | - Huanjie Zhai
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, CAAS, Harbin, People’s Republic of China
| | - Tao Wang
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, CAAS, Harbin, People’s Republic of China
| | - Shida Wang
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, CAAS, Harbin, People’s Republic of China
| | - Yuxuan Gao
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, CAAS, Harbin, People’s Republic of China
| | - Qinghe Hou
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, CAAS, Harbin, People’s Republic of China
| | - Xiangyu Guan
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, CAAS, Harbin, People’s Republic of China
| | - Shuwen Li
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, CAAS, Harbin, People’s Republic of China
| | - Lian-Feng Li
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, CAAS, Harbin, People’s Republic of China
| | - Hongxia Wu
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, CAAS, Harbin, People’s Republic of China
| | - Yuzi Luo
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, CAAS, Harbin, People’s Republic of China
| | - Su Li
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, CAAS, Harbin, People’s Republic of China
| | - Yuan Sun
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, CAAS, Harbin, People’s Republic of China
| | - Dongming Zhao
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, CAAS, Harbin, People’s Republic of China
| | - Yongfeng Li
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, CAAS, Harbin, People’s Republic of China
| | - Hua-Ji Qiu
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, CAAS, Harbin, People’s Republic of China
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Wang Z, Zhang J, Li F, Zhang Z, Chen W, Zhang X, Sun E, Zhu Y, Liu R, He X, Bu Z, Zhao D. The attenuated African swine fever vaccine HLJ/18-7GD provides protection against emerging prevalent genotype II variants in China. Emerg Microbes Infect 2024; 13:2300464. [PMID: 38164797 PMCID: PMC10810661 DOI: 10.1080/22221751.2023.2300464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2023] [Accepted: 12/24/2023] [Indexed: 01/03/2024]
Abstract
Genetic changes have occurred in the genomes of prevalent African swine fever viruses (ASFVs) in the field in China, which may change their antigenic properties and result in immune escape. There is usually poor cross-protection between heterogonous isolates, and, therefore, it is important to test the cross-protection of the live attenuated ASFV vaccines against current prevalent heterogonous isolates. In this study, we evaluated the protective efficacy of the ASFV vaccine candidate HLJ/18-7GD against emerging isolates. HLJ/18-7GD provided protection against a highly virulent variant and a lower lethal isolate, both derived from genotype II Georgia07-like ASFV and isolated in 2020. HLJ/18-7GD vaccination prevented pigs from developing ASF-specific clinical signs and death, decreased viral shedding via the oral and rectal routes, and suppressed viral replication after challenges. However, HLJ/18-7GD vaccination did not provide solid cross-protection against genotype I NH/P68-like ASFV challenge in pigs. HLJ/18-7GD vaccination thus shows great promise as an alternative strategy for preventing and controlling genotype II ASFVs, but vaccines providing cross-protection against different ASFV genotypes may be needed in China.
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Affiliation(s)
- Zilong Wang
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, People’s Republic of China
| | - Jiwen Zhang
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, People’s Republic of China
| | - Fang Li
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, People’s Republic of China
| | - Zhenjiang Zhang
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, People’s Republic of China
| | - Weiye Chen
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, People’s Republic of China
| | - Xianfeng Zhang
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, People’s Republic of China
| | - Encheng Sun
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, People’s Republic of China
| | - Yuanmao Zhu
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, People’s Republic of China
| | - Renqiang Liu
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, People’s Republic of China
| | - Xijun He
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, People’s Republic of China
| | - Zhigao Bu
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, People’s Republic of China
| | - Dongming Zhao
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, People’s Republic of China
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3
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Song J, Wang M, Zhou L, Tian P, Sun J, Sun Z, Guo C, Wu Y, Zhang G. A novel conserved B-cell epitope in pB602L of African swine fever virus. Appl Microbiol Biotechnol 2024; 108:78. [PMID: 38194141 PMCID: PMC10776737 DOI: 10.1007/s00253-023-12921-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 11/27/2023] [Accepted: 12/01/2023] [Indexed: 01/10/2024]
Abstract
African swine fever virus (ASFV) is a complex DNA virus and the only member of the Asfarviridae family. It causes high mortality and severe economic losses in pigs. The ASFV pB602L protein plays a key role in virus assembly and functions as a molecular chaperone of the major capsid protein p72. In addition, pB602L is an important target for the development of diagnostic tools for African swine fever (ASF) because it is a highly immunogenic antigen against ASFV. In this study, we expressed and purified ASFV pB602L and validated its immunogenicity in serum from naturally infected pigs with ASFV. Furthermore, we successfully generated an IgG2a κ subclass monoclonal antibody (mAb 7E7) against pB602L using hybridoma technology. Using western blot and immunofluorescence assays, mAb 7E7 specifically recognized the ASFV Pig/HLJ/2018/strain and eukaryotic recombinant ASFV pB602L protein in vitro. The 474SKENLTPDE482 epitope in the ASFV pB602L C-terminus was identified as the minimal linear epitope for mAb 7E7 binding, with dozens of truncated pB602l fragments characterized by western blot assay. We also showed that this antigenic epitope sequence has a high conservation and antigenic index. Our study contributes to improved vaccine and antiviral development and provides new insights into the serologic diagnosis of ASF. KEY POINTS: • We developed a monoclonal antibody against ASFV pB602L, which can specifically recognize the ASFV Pig/HLJ/2018/ strain. • This study found one novel conserved B-cell epitope 474SKENLTPDE482. • In the 3D structure, 474SKENLTPDE482 is exposed on the surface of ASFV pB602L, forming a curved linear structure.
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Affiliation(s)
- Jinxing Song
- International Joint Research Center of National Animal Immunology, College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450046, China
| | - Mengxiang Wang
- International Joint Research Center of National Animal Immunology, College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450046, China
| | - Lei Zhou
- International Joint Research Center of National Animal Immunology, College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450046, China
| | - Panpan Tian
- International Joint Research Center of National Animal Immunology, College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450046, China
| | - Junru Sun
- International Joint Research Center of National Animal Immunology, College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450046, China
| | - Zhuoya Sun
- International Joint Research Center of National Animal Immunology, College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450046, China
| | - Chenyun Guo
- International Joint Research Center of National Animal Immunology, College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450046, China
| | - Yanan Wu
- International Joint Research Center of National Animal Immunology, College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450046, China.
| | - Gaiping Zhang
- International Joint Research Center of National Animal Immunology, College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450046, China.
- Longhu Laboratory, Zhengzhou, 450046, China.
- Agriculture Sciences, Peking University, Beijing, 100871, China.
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4
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Oh SI, Sheet S, Bui VN, Dao DT, Bui NA, Kim TH, Cha J, Park MR, Hur TY, Jung YH, Kim B, Lee HS, Cho A, Lim D. Transcriptome profiles of organ tissues from pigs experimentally infected with African swine fever virus in early phase of infection. Emerg Microbes Infect 2024; 13:2366406. [PMID: 38847223 PMCID: PMC11210422 DOI: 10.1080/22221751.2024.2366406] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2024] [Accepted: 06/05/2024] [Indexed: 06/27/2024]
Abstract
African swine fever, caused by African swine fever virus (ASFV), is a highly contagious and fatal disease that poses a significant threat to the global pig industry. The limited information on ASFV pathogenesis and ASFV-host interactions has recently prompted numerous transcriptomic studies. However, most of these studies have focused on elucidating the transcriptome profiles of ASFV-infected porcine alveolar macrophages in vitro. Here, we analyzed dynamic transcriptional patterns in vivo in nine organ tissues (spleen, submandibular lymph node, mesenteric lymph node, inguinal lymph node, tonsils, lungs, liver, kidneys, and heart) obtained from pigs in the early stages of ASFV infection (1 and 3 d after viremia). We observed rapid spread of ASFV to the spleen after viremia, followed by broad transmission to the liver and lungs and subsequently, the submandibular and inguinal lymph nodes. Profound variations in gene expression patterns were observed across all organs and at all time-points, providing an understanding of the distinct defence strategies employed by each organ against ASFV infection. All ASFV-infected organs exhibited a collaborative response, activating immune-associated genes such as S100A8, thereby triggering a pro-inflammatory cytokine storm and interferon activation. Functional analysis suggested that ASFV exploits the PI3K-Akt signalling pathway to evade the host immune system. Overall, our findings provide leads into the mechanisms underlying pathogenesis and host immune responses in different organs during the early stages of infection, which can guide further explorations, aid the development of efficacious antiviral strategies against ASFV, and identify valuable candidate gene targets for vaccine development.
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Affiliation(s)
- Sang-Ik Oh
- National Institute of Animal Science, Rural Development Administration, Wanju, Republic of Korea
- Laboratory of Veterinary Pathology and Biosafety Research Institute, College of Veterinary Medicine, Jeonbuk National University, Iksan, Republic of Korea
| | - Sunirmal Sheet
- National Institute of Animal Science, Rural Development Administration, Wanju, Republic of Korea
| | - Vuong Nghia Bui
- Virology Department, National Institute of Veterinary Research, Hanoi, Vietnam
| | - Duy Tung Dao
- Virology Department, National Institute of Veterinary Research, Hanoi, Vietnam
| | - Ngoc Anh Bui
- Virology Department, National Institute of Veterinary Research, Hanoi, Vietnam
| | - Tae-Hun Kim
- National Institute of Animal Science, Rural Development Administration, Wanju, Republic of Korea
- TNT Research. Co., Ltd., R&D center, Sejong-si, Republic of Korea
| | - Jihye Cha
- National Institute of Animal Science, Rural Development Administration, Wanju, Republic of Korea
| | - Mi-Rim Park
- National Institute of Animal Science, Rural Development Administration, Wanju, Republic of Korea
| | - Tai-Young Hur
- National Institute of Animal Science, Rural Development Administration, Wanju, Republic of Korea
| | - Young-Hun Jung
- National Institute of Animal Science, Rural Development Administration, Wanju, Republic of Korea
| | - Bumseok Kim
- Laboratory of Veterinary Pathology and Biosafety Research Institute, College of Veterinary Medicine, Jeonbuk National University, Iksan, Republic of Korea
| | - Hu Suk Lee
- International Livestock Research Institute, Hanoi, Vietnam
- College of Veterinary Medicine, Chungnam National University, Daejoen, Republic of Korea
| | - Ara Cho
- National Institute of Animal Science, Rural Development Administration, Wanju, Republic of Korea
| | - Dajeong Lim
- National Institute of Animal Science, Rural Development Administration, Wanju, Republic of Korea
- Department of Animal Resources Science, College of Agriculture and Life Sciences, Chungnam National University, Daejoen, Republic of Korea
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5
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Ruedas-Torres I, Thi to Nga B, Salguero FJ. Pathogenicity and virulence of African swine fever virus. Virulence 2024; 15:2375550. [PMID: 38973077 PMCID: PMC11232652 DOI: 10.1080/21505594.2024.2375550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Accepted: 06/28/2024] [Indexed: 07/09/2024] Open
Abstract
African swine fever (ASF) is a devastating disease with a high impact on the pork industry worldwide. ASF virus (ASFV) is a very complex pathogen, the sole member of the family Asfaviridae, which induces a state of immune suppression in the host through infection of myeloid cells and apoptosis of lymphocytes. Moreover, haemorrhages are the other main pathogenic effect of ASFV infection in pigs, related to the infection of endothelial cells, as well as the activation and structural changes of this cell population by proinflammatory cytokine upregulation within bystander monocytes and macrophages. There are still many gaps in the knowledge of the role of proteins produced by the ASFV, which is related to the difficulty in producing a safe and effective vaccine to combat the disease, although few candidates have been approved for use in Southeast Asia in the past couple of years.
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Affiliation(s)
- Ines Ruedas-Torres
- Vaccine Development and Evaluation Centre (VDEC), United Kingdom Health Security Agency, Salisbury, UK
| | - Bui Thi to Nga
- Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Hanoi, Vietnam
| | - Francisco J. Salguero
- Vaccine Development and Evaluation Centre (VDEC), United Kingdom Health Security Agency, Salisbury, UK
- School of Biosciences and Medicine, Faculty of Health and Medical Sciences, University of Surrey, Guildford, UK
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Kong C, Fu X, Zhang W, Luo Y, Mai Z, Huang Z, Zhang G, Zhou P. Rapid discrimination of African swine fever virus nucleic acid and virions using BenzoNuclease. Gene 2024; 928:148755. [PMID: 38992760 DOI: 10.1016/j.gene.2024.148755] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Revised: 07/01/2024] [Accepted: 07/05/2024] [Indexed: 07/13/2024]
Abstract
African swine fever (ASF) is an acute and severe infectious disease caused by the African Swine Fever Virus (ASFV). ASFV exhibits significant resistance and stability in the environment, which, coupled with its double-stranded DNA and large genome, predisposes it to contaminate laboratory samples. This characteristic can lead to false-positive results in swine farm settings even days after disinfection, as detectable through polymerase chain reaction (PCR) or real-time fluorescent quantitative PCR (qPCR) assays. To meet the demand for efficient clinical methods capable of discriminating between ASFV nucleic acid and ASFV virions, this study aims to ascertain the efficacy of the nuclease "BenzoNuclease" in distinguishing ASFV nucleic acid (ASFV-DNA) from ASFV virions. BenzoNuclease is a versatile nucleic acid enzyme with the capacity to degrade nearly all forms of DNA and RNA. Initially, this research established a highly sensitive general PCR detection method for ASFV. Subsequently, a positive control was constructed using the M13 bacteriophage to substitute for active ASFV, facilitating the development of an improved qPCR method. It is important to note that common disinfectants have the potential to deactivate BenzoNuclease. However, in an environment simulating actual production applications, residual disinfectants do not interfere with the enzymatic efficacy of BenzoNuclease, thus not affecting the detection capabilities of this method. Positive clinical samples from pig farms, upon testing with the improved method, revealed that three samples were positive, indicating the presence of viral particles, while the remaining samples were negative, indicating the presence of nucleic acids. This provides an additional new option for sample testing in pig farms.
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Affiliation(s)
- Cuiying Kong
- African Swine Fever Regional Laboratory of China (Guangzhou), College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China; Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
| | - Xueying Fu
- African Swine Fever Regional Laboratory of China (Guangzhou), College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China; Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China
| | - Wenbo Zhang
- African Swine Fever Regional Laboratory of China (Guangzhou), College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China; Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
| | - Yi Luo
- African Swine Fever Regional Laboratory of China (Guangzhou), College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China; Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
| | - Zhanzhuo Mai
- Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
| | - Zhao Huang
- Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China
| | - Guihong Zhang
- Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
| | - Pei Zhou
- African Swine Fever Regional Laboratory of China (Guangzhou), College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China; Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
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7
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Hagoss YT, Shen D, Wang W, Zhang Z, Li F, Sun E, Zhu Y, Ge J, Guo Y, Bu Z, Zhao D. African swine fever virus pCP312R interacts with host RPS27A to shut off host protein translation and promotes viral replication. Int J Biol Macromol 2024; 277:134213. [PMID: 39069039 DOI: 10.1016/j.ijbiomac.2024.134213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2024] [Revised: 07/21/2024] [Accepted: 07/25/2024] [Indexed: 07/30/2024]
Abstract
African swine fever virus (ASFV) severely threatens the global economy and food security. ASFV encodes >150 genes, but the functions of most of them have yet to be characterized in detail. Here we explored the function of the ASFV CP312R gene and found that CP312R plays an essential role in ASFV replication. Knockout of the CP312R gene terminated viral replication and CP312R knockdown substantially suppressed ASFV infection in vitro. Furthermore, we resolved the crystal structure of pCP312R to 2.3 Å resolution and found that pCP312R has the potential to bind nucleic acids. LC-MS analysis and co-immunoprecipitation assay revealed that pCP312R interacts with RPS27A, a component of the 40S ribosomal subunit. Confocal microscopy showed the interaction between pCP312R and RPS27A leaded to a modification in the subcellular localization of this host protein, which suppresses host protein translation. Renilla-Glo luciferase assay and Ribopuromycylation analysis evidenced that knockout of RPS27A completely aborted the shutoff activity of pCP312R, and trans-complementation of RPS27A recovered pCP312R shutoff activity in RPS27A-knockout cells. Our findings shed light on the function of ASFV CP312R gene in virus infection, which triggers inhibition of host protein synthesis.
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Affiliation(s)
- Yibrah Tekle Hagoss
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China; Department of Animal Sciences, College of Agriculture and Natural Resources, Raya University, Maichew, P.O. Box 92, Ethiopia
| | - Dongdong Shen
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China; College of Veterinary Medicine, Northeast Agricultural University, Harbin 150030, China
| | - Wenming Wang
- Institute of Molecular Science, Shanxi University, Taiyuan 030006, China
| | - Zhenjiang Zhang
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China
| | - Fang Li
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China
| | - Encheng Sun
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China
| | - Yuanmao Zhu
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China
| | - Junwei Ge
- College of Veterinary Medicine, Northeast Agricultural University, Harbin 150030, China
| | - Yu Guo
- State Key Laboratory of Medicinal Chemical Biology and College of Life Sciences, Nankai University, Tianjin 300350, China.
| | - Zhigao Bu
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China.
| | - Dongming Zhao
- State Key Laboratory for Animal Disease Control and Prevention, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China.
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8
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Lee K, Hang Vu TT, Yeom M, Nguyen VD, Than TT, Nguyen VT, Jeong DG, Ambagala A, Le VP, Song D. Molecular Characterization of Emerging Recombinant African Swine Fever Virus of Genotype I and II in Vietnam, 2023. Emerg Microbes Infect 2024:2404156. [PMID: 39258419 DOI: 10.1080/22221751.2024.2404156] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/12/2024]
Affiliation(s)
- Kyungmoon Lee
- Department of Virology, College of Veterinary Medicine and Research Institute for Veterinary Science, Seoul National University, Seoul, Republic of Korea
| | - Thi Thu Hang Vu
- Institute of Veterinary Science and Technology, Vietnam Union of Science and Technology Association, Hanoi, Vietnam
| | - Minjoo Yeom
- Department of Virology, College of Veterinary Medicine and Research Institute for Veterinary Science, Seoul National University, Seoul, Republic of Korea
| | - Viet Dung Nguyen
- College of Veterinary Medicine, Vietnam National University of Agriculture, Hanoi, Vietnam
| | - Thi Tam Than
- College of Veterinary Medicine, Vietnam National University of Agriculture, Hanoi, Vietnam
| | - Van Tam Nguyen
- Institute of Veterinary Science and Technology, Vietnam Union of Science and Technology Association, Hanoi, Vietnam
| | - Dae Gwin Jeong
- Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea
| | - Aruna Ambagala
- Canadian Food Inspection Agency, National Centre for Foreign Animal Disease, Winnipeg, MB R3E 3R2, Canada
| | - Van Phan Le
- College of Veterinary Medicine, Vietnam National University of Agriculture, Hanoi, Vietnam
| | - Daesub Song
- Department of Virology, College of Veterinary Medicine and Research Institute for Veterinary Science, Seoul National University, Seoul, Republic of Korea
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9
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Li S, Gao Y, Zhai H, Guan X, Yang X, Hou Q, Zhang X, Li LF, Wang X, Huang S, Qiu HJ, Li Y. Immune responses induced by a recombinant C-strain of classical swine fever virus expressing the F317L protein of African swine fever virus. Vet Microbiol 2024; 298:110239. [PMID: 39243670 DOI: 10.1016/j.vetmic.2024.110239] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2024] [Revised: 08/15/2024] [Accepted: 08/28/2024] [Indexed: 09/09/2024]
Abstract
African swine fever (ASF), a highly infectious and devastating disease affecting both domestic pigs and wild boars, owes its etiology to African swine fever virus (ASFV). ASFV encodes more than 165 proteins. However, novel immunogenic proteins remain unknown. This study aimed to determine the antigenicity of the F317L protein (pF317L) of ASFV. The results revealed that pF317L was able to react with convalescent pig sera, indicating that pF317L could be a candidate antigen. The antigenic potential of pF317L expressed by rHCLV-F317L, a recombinant virus in the backbone of C-strain (a lapinized live attenuated classical swine fever virus) was further investigated in rabbits and pigs. The results revealed that antibodies and cell-mediated immune responses against pF317L were induced in either rabbits or pigs inoculated with rHCLV-F317L. Importantly, anti-pF317L antibodies from rabbits or pigs immunized with rHCLV-F317L significantly inhibited ASFV replication in vitro. In conclusion, pF317L demonstrates favorable immunogenic properties, positioning it as a promising candidate for the development of protective antigens in the ongoing endeavor to formulate efficacious ASF vaccine strategies.
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Affiliation(s)
- Shuwen Li
- State Key Laboratory for Animal Disease Control and Prevention Harbin Veterinary Research Institute, CAAS, 678 Haping Road, Harbin, Heilongjiang 150069, China; College of Life Science and Engineering, Foshan University, 33 Guangyun Road, Foshan, Guangdong 528231, China
| | - Yuxuan Gao
- State Key Laboratory for Animal Disease Control and Prevention Harbin Veterinary Research Institute, CAAS, 678 Haping Road, Harbin, Heilongjiang 150069, China
| | - Huanjie Zhai
- State Key Laboratory for Animal Disease Control and Prevention Harbin Veterinary Research Institute, CAAS, 678 Haping Road, Harbin, Heilongjiang 150069, China
| | - Xiangyu Guan
- State Key Laboratory for Animal Disease Control and Prevention Harbin Veterinary Research Institute, CAAS, 678 Haping Road, Harbin, Heilongjiang 150069, China
| | - Xiaoke Yang
- State Key Laboratory for Animal Disease Control and Prevention Harbin Veterinary Research Institute, CAAS, 678 Haping Road, Harbin, Heilongjiang 150069, China
| | - Qinghe Hou
- State Key Laboratory for Animal Disease Control and Prevention Harbin Veterinary Research Institute, CAAS, 678 Haping Road, Harbin, Heilongjiang 150069, China
| | - Xinyu Zhang
- State Key Laboratory for Animal Disease Control and Prevention Harbin Veterinary Research Institute, CAAS, 678 Haping Road, Harbin, Heilongjiang 150069, China; College of Life Science and Engineering, Foshan University, 33 Guangyun Road, Foshan, Guangdong 528231, China
| | - Lian-Feng Li
- State Key Laboratory for Animal Disease Control and Prevention Harbin Veterinary Research Institute, CAAS, 678 Haping Road, Harbin, Heilongjiang 150069, China
| | - Xiao Wang
- Department of Pathogenic Biology, School of Basic Medical Sciences, Binzhou Medical University, 346 Guanhai Road, Yantai, Shandong 264000, China.
| | - Shujian Huang
- College of Life Science and Engineering, Foshan University, 33 Guangyun Road, Foshan, Guangdong 528231, China.
| | - Hua-Ji Qiu
- State Key Laboratory for Animal Disease Control and Prevention Harbin Veterinary Research Institute, CAAS, 678 Haping Road, Harbin, Heilongjiang 150069, China; College of Life Science and Engineering, Foshan University, 33 Guangyun Road, Foshan, Guangdong 528231, China.
| | - Yongfeng Li
- State Key Laboratory for Animal Disease Control and Prevention Harbin Veterinary Research Institute, CAAS, 678 Haping Road, Harbin, Heilongjiang 150069, China.
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10
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Shirafuji H, Nishi T, Kokuho T, Dang HV, Truong AD, Kitamura T, Watanabe M, Tran HTT, Masujin K. Validation of a direct multiplex real-time reverse transcription PCR assay for rapid detection of African swine fever virus using swine field samples in Vietnam. BMC Res Notes 2024; 17:240. [PMID: 39223570 PMCID: PMC11370023 DOI: 10.1186/s13104-024-06898-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2024] [Accepted: 08/13/2024] [Indexed: 09/04/2024] Open
Abstract
OBJECTIVE This study validates a direct multiplex real-time reverse transcription polymerase chain reaction (rRT-PCR) assay which was previously established for enabling rapid and simultaneous detection of African swine fever (ASF) virus (ASFV) and classical swine fever virus. The assay eliminates the need for viral nucleic acid purification using a buffer system for crude extraction and an impurity-tolerant enzyme. However, the assay had not yet been validated using field samples of ASFV-infected pigs. Therefore, to address this gap, we tested 101 samples collected from pigs in Vietnam during 2018 and 2021 for validation. RESULTS The rRT-PCR assay demonstrated a diagnostic sensitivity of 98.8% and a specificity of 100%. Remarkably, crude samples yielded results comparable to those of purified samples, indicating the feasibility of using crude samples without compromising accuracy in ASFV detection. Our findings emphasize the effectiveness of the rRT-PCR assay for the prompt and accurate diagnosis of both swine fever viruses, which is essential for effective disease prevention and control in swine populations.
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Affiliation(s)
- Hiroaki Shirafuji
- Division of Transboundary Animal Disease Research, National Institute of Animal Health, National Agriculture and Food Research Organization, 6-20-1, Josui-honcho, Kodaira, Tokyo, 187-0022, Japan
| | - Tatsuya Nishi
- Division of Transboundary Animal Disease Research, National Institute of Animal Health, National Agriculture and Food Research Organization, 6-20-1, Josui-honcho, Kodaira, Tokyo, 187-0022, Japan
| | - Takehiro Kokuho
- Division of Transboundary Animal Disease Research, National Institute of Animal Health, National Agriculture and Food Research Organization, 6-20-1, Josui-honcho, Kodaira, Tokyo, 187-0022, Japan
| | - Hoang Vu Dang
- Department of Biochemistry and Immunology, National Institute of Veterinary Research, 86, Truong Chinh, Dong Da, Hanoi, Vietnam
| | - Anh Duc Truong
- Department of Biochemistry and Immunology, National Institute of Veterinary Research, 86, Truong Chinh, Dong Da, Hanoi, Vietnam
| | - Tomoya Kitamura
- Division of Transboundary Animal Disease Research, National Institute of Animal Health, National Agriculture and Food Research Organization, 6-20-1, Josui-honcho, Kodaira, Tokyo, 187-0022, Japan
| | - Mizuki Watanabe
- Division of Transboundary Animal Disease Research, National Institute of Animal Health, National Agriculture and Food Research Organization, 6-20-1, Josui-honcho, Kodaira, Tokyo, 187-0022, Japan
| | - Ha Thi Thanh Tran
- Department of Biochemistry and Immunology, National Institute of Veterinary Research, 86, Truong Chinh, Dong Da, Hanoi, Vietnam.
| | - Kentaro Masujin
- Division of Transboundary Animal Disease Research, National Institute of Animal Health, National Agriculture and Food Research Organization, 6-20-1, Josui-honcho, Kodaira, Tokyo, 187-0022, Japan.
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11
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Liang Y, Kuang Q, Zheng X, Xu Y, Feng Y, Xiang Q, Zhang G, Zhou P. Monoclonal antibody development for early detection of ASFV I73R protein: Identification of a linear antigenic epitope. Virology 2024; 597:110145. [PMID: 38941747 DOI: 10.1016/j.virol.2024.110145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Revised: 05/06/2024] [Accepted: 06/18/2024] [Indexed: 06/30/2024]
Abstract
African swine fever virus (ASFV), which was first identified in northern China in 2018, causes high mortality in pigs. Since the I73R protein in ASFV is abundantly expressed during the early phase of virus replication, it can be used as a target protein for early diagnosis. In this study, the I73R protein of ASFV was expressed, and we successfully prepared a novel monoclonal antibody (mAb), 8G11D7, that recognizes this protein. Through both indirect immunofluorescence and Western blotting assays, we demonstrated that 8G11D7 can detect ASFV strains. By evaluating the binding of the antibody to a series of I73R-truncated peptides, the definitive epitope recognized by the monoclonal antibody 8G11D7 was determined to be 58 DKTNTIYPP 66. Bioinformatic analysis revealed that the antigenic epitope had a high antigenic index and conservatism. This study contributes to a deeper understanding of ASFV protein structure and function, helping establish ASFV-specific detection method.
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Affiliation(s)
- Yifan Liang
- Guangdong Provincial Key Laboratory of Zoonosis Prevention and Control, College of Veterinary Medicine, South China Agricultural University, Guangzhou, 510642, China; African Swine Fever Regional Laboratory of China (Guangzhou), Guangzhou, 510642, China; Key Laboratory of Animal Vaccine Development, Ministry of Agriculture and Rural Affairs, Guangzhou, 510000, China
| | - Qiyuan Kuang
- Guangdong Provincial Key Laboratory of Zoonosis Prevention and Control, College of Veterinary Medicine, South China Agricultural University, Guangzhou, 510642, China; African Swine Fever Regional Laboratory of China (Guangzhou), Guangzhou, 510642, China
| | - Xiaoyu Zheng
- Guangdong Provincial Key Laboratory of Zoonosis Prevention and Control, College of Veterinary Medicine, South China Agricultural University, Guangzhou, 510642, China; Maoming Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Maoming, 525000, China
| | - Yifan Xu
- Guangdong Provincial Key Laboratory of Zoonosis Prevention and Control, College of Veterinary Medicine, South China Agricultural University, Guangzhou, 510642, China; African Swine Fever Regional Laboratory of China (Guangzhou), Guangzhou, 510642, China
| | - Yongzhi Feng
- Guangdong Provincial Key Laboratory of Zoonosis Prevention and Control, College of Veterinary Medicine, South China Agricultural University, Guangzhou, 510642, China; African Swine Fever Regional Laboratory of China (Guangzhou), Guangzhou, 510642, China
| | - Qinxin Xiang
- Guangdong Provincial Key Laboratory of Zoonosis Prevention and Control, College of Veterinary Medicine, South China Agricultural University, Guangzhou, 510642, China; Maoming Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Maoming, 525000, China
| | - Guihong Zhang
- Guangdong Provincial Key Laboratory of Zoonosis Prevention and Control, College of Veterinary Medicine, South China Agricultural University, Guangzhou, 510642, China; African Swine Fever Regional Laboratory of China (Guangzhou), Guangzhou, 510642, China; Key Laboratory of Animal Vaccine Development, Ministry of Agriculture and Rural Affairs, Guangzhou, 510000, China.
| | - Pei Zhou
- Guangdong Provincial Key Laboratory of Zoonosis Prevention and Control, College of Veterinary Medicine, South China Agricultural University, Guangzhou, 510642, China; African Swine Fever Regional Laboratory of China (Guangzhou), Guangzhou, 510642, China; Key Laboratory of Animal Vaccine Development, Ministry of Agriculture and Rural Affairs, Guangzhou, 510000, China.
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12
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Auer A, Cattoli G, Padungtod P, Lamien CE, Oh Y, Jayme S, Rozstalnyy A. Challenges in the Application of African Swine Fever Vaccines in Asia. Animals (Basel) 2024; 14:2473. [PMID: 39272258 PMCID: PMC11393951 DOI: 10.3390/ani14172473] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2024] [Revised: 08/23/2024] [Accepted: 08/23/2024] [Indexed: 09/15/2024] Open
Abstract
This paper explores the significance of quality vaccines in managing ASF in Asia, where it poses a substantial threat to the pork industry. It emphasizes the risks associated with substandard vaccines, including the emergence of new virus strains that complicate disease control. Highlighting recent advancements in vaccine deployment in Vietnam, the paper calls for rigorous testing and regulations to guarantee vaccine effectiveness and safety. The authors advocate for the implementation of vaccines with the inclusion of differentiating infected from vaccinated animals (DIVA), which enhances disease management strategies in both endemic and non-endemic regions. The conclusion underscores the necessity of stringent standards in vaccine development and strict adherence to regulatory guidelines to ensure successful ASF management and maintain public trust in the vaccines.
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Affiliation(s)
- Agathe Auer
- Joint FAO/IAEA Center, 2444 Seibersdorf, Austria
- Food and Agriculture Organization of the United Nations (FAO), 00153 Rome, Italy
| | - Giovanni Cattoli
- Istituto Zooprofilattico Sperimentale delle Venezie, 35020 Padua, Italy
| | - Pawin Padungtod
- Food and Agriculture Organization of the United Nations (FAO), Representation in Vietnam, Hanoi 11112, Vietnam
| | | | - Yooni Oh
- Food and Agriculture Organization of the United Nations (FAO), Regional Office for Asia and the Pacific, Bangkok 10200, Thailand
| | - Sarah Jayme
- Food and Agriculture Organization of the United Nations (FAO), Regional Office for Asia and the Pacific, Bangkok 10200, Thailand
| | - Andriy Rozstalnyy
- Food and Agriculture Organization of the United Nations (FAO), 00153 Rome, Italy
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13
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Truong QL, Wang L, Nguyen TA, Nguyen HT, Le AD, Nguyen GV, Vu AT, Hoang PT, Le TT, Nguyen HT, Nguyen HTT, Lai HLT, Bui DAT, Huynh LMT, Madera R, Li Y, Retallick J, Matias-Ferreyra F, Nguyen LT, Shi J. A Non-Hemadsorbing Live-Attenuated Virus Vaccine Candidate Protects Pigs against the Contemporary Pandemic Genotype II African Swine Fever Virus. Viruses 2024; 16:1326. [PMID: 39205300 PMCID: PMC11359042 DOI: 10.3390/v16081326] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Revised: 08/13/2024] [Accepted: 08/15/2024] [Indexed: 09/04/2024] Open
Abstract
African swine fever (ASF) is a highly contagious and severe hemorrhagic transboundary swine viral disease with up to a 100% mortality rate, which leads to a tremendous socio-economic loss worldwide. The lack of safe and efficacious ASF vaccines is the greatest challenge in the prevention and control of ASF. In this study, we generated a safe and effective live-attenuated virus (LAV) vaccine candidate VNUA-ASFV-LAVL3 by serially passaging a virulent genotype II strain (VNUA-ASFV-L2) in an immortalized porcine alveolar macrophage cell line (3D4/21, 50 passages). VNUA-ASFV-LAVL3 lost its hemadsorption ability but maintained comparable growth kinetics in 3D4/21 cells to that of the parental strain. Notably, it exhibited significant attenuation of virulence in pigs across different doses (103, 104, and 105 TCID50). All vaccinated pigs remained healthy with no clinical signs of African swine fever virus (ASFV) infection throughout the 28-day observation period of immunization. VNUA-ASFV-LAVL3 was efficiently cleared from the blood at 14-17 days post-infection, even at the highest dose (105 TCID50). Importantly, the attenuation observed in vivo did not compromise the ability of VNUA-ASFV-LAVL3 to induce protective immunity. Vaccination with VNUA-ASFV-LAVL3 elicited robust humoral and cellular immune responses in pigs, achieving 100% protection against a lethal wild-type ASFV (genotype II) challenge at all tested doses (103, 104, and 105 TCID50). Furthermore, a single vaccination (104 TCID50) provided protection for up to 2 months. These findings suggest that VNUA-ASFV-LAVL3 can be utilized as a promising safe and efficacious LAV candidate against the contemporary pandemic genotype II ASFV.
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Affiliation(s)
- Quang Lam Truong
- Key Laboratory of Veterinary Biotechnology, Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Gia Lam, Ha Noi 12406, Vietnam; (T.A.N.); (H.T.N.); (A.D.L.); (A.T.V.); (P.T.H.); (T.T.L.); (H.T.N.); (H.T.T.N.); (H.L.T.L.); (D.A.T.B.)
| | - Lihua Wang
- Center on Biologics Development and Evaluation, Department of Anatomy and Physiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA; (L.W.); (R.M.); (Y.L.)
| | - Tuan Anh Nguyen
- Key Laboratory of Veterinary Biotechnology, Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Gia Lam, Ha Noi 12406, Vietnam; (T.A.N.); (H.T.N.); (A.D.L.); (A.T.V.); (P.T.H.); (T.T.L.); (H.T.N.); (H.T.T.N.); (H.L.T.L.); (D.A.T.B.)
| | - Hoa Thi Nguyen
- Key Laboratory of Veterinary Biotechnology, Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Gia Lam, Ha Noi 12406, Vietnam; (T.A.N.); (H.T.N.); (A.D.L.); (A.T.V.); (P.T.H.); (T.T.L.); (H.T.N.); (H.T.T.N.); (H.L.T.L.); (D.A.T.B.)
| | - Anh Dao Le
- Key Laboratory of Veterinary Biotechnology, Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Gia Lam, Ha Noi 12406, Vietnam; (T.A.N.); (H.T.N.); (A.D.L.); (A.T.V.); (P.T.H.); (T.T.L.); (H.T.N.); (H.T.T.N.); (H.L.T.L.); (D.A.T.B.)
| | - Giap Van Nguyen
- Department of Veterinary Microbiology and Infectious Diseases, Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Gia Lam, Ha Noi 12406, Vietnam; (G.V.N.); (L.M.T.H.)
| | - Anh Thi Vu
- Key Laboratory of Veterinary Biotechnology, Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Gia Lam, Ha Noi 12406, Vietnam; (T.A.N.); (H.T.N.); (A.D.L.); (A.T.V.); (P.T.H.); (T.T.L.); (H.T.N.); (H.T.T.N.); (H.L.T.L.); (D.A.T.B.)
| | - Phuong Thi Hoang
- Key Laboratory of Veterinary Biotechnology, Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Gia Lam, Ha Noi 12406, Vietnam; (T.A.N.); (H.T.N.); (A.D.L.); (A.T.V.); (P.T.H.); (T.T.L.); (H.T.N.); (H.T.T.N.); (H.L.T.L.); (D.A.T.B.)
| | - Trang Thi Le
- Key Laboratory of Veterinary Biotechnology, Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Gia Lam, Ha Noi 12406, Vietnam; (T.A.N.); (H.T.N.); (A.D.L.); (A.T.V.); (P.T.H.); (T.T.L.); (H.T.N.); (H.T.T.N.); (H.L.T.L.); (D.A.T.B.)
| | - Huyen Thi Nguyen
- Key Laboratory of Veterinary Biotechnology, Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Gia Lam, Ha Noi 12406, Vietnam; (T.A.N.); (H.T.N.); (A.D.L.); (A.T.V.); (P.T.H.); (T.T.L.); (H.T.N.); (H.T.T.N.); (H.L.T.L.); (D.A.T.B.)
| | - Hang Thu Thi Nguyen
- Key Laboratory of Veterinary Biotechnology, Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Gia Lam, Ha Noi 12406, Vietnam; (T.A.N.); (H.T.N.); (A.D.L.); (A.T.V.); (P.T.H.); (T.T.L.); (H.T.N.); (H.T.T.N.); (H.L.T.L.); (D.A.T.B.)
| | - Huong Lan Thi Lai
- Key Laboratory of Veterinary Biotechnology, Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Gia Lam, Ha Noi 12406, Vietnam; (T.A.N.); (H.T.N.); (A.D.L.); (A.T.V.); (P.T.H.); (T.T.L.); (H.T.N.); (H.T.T.N.); (H.L.T.L.); (D.A.T.B.)
| | - Dao Anh Tran Bui
- Key Laboratory of Veterinary Biotechnology, Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Gia Lam, Ha Noi 12406, Vietnam; (T.A.N.); (H.T.N.); (A.D.L.); (A.T.V.); (P.T.H.); (T.T.L.); (H.T.N.); (H.T.T.N.); (H.L.T.L.); (D.A.T.B.)
| | - Le My Thi Huynh
- Department of Veterinary Microbiology and Infectious Diseases, Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Gia Lam, Ha Noi 12406, Vietnam; (G.V.N.); (L.M.T.H.)
| | - Rachel Madera
- Center on Biologics Development and Evaluation, Department of Anatomy and Physiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA; (L.W.); (R.M.); (Y.L.)
| | - Yuzhen Li
- Center on Biologics Development and Evaluation, Department of Anatomy and Physiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA; (L.W.); (R.M.); (Y.L.)
| | - Jamie Retallick
- Department of Diagnostic Medicine and Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA; (J.R.); (F.M.-F.)
| | - Franco Matias-Ferreyra
- Department of Diagnostic Medicine and Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA; (J.R.); (F.M.-F.)
| | - Lan Thi Nguyen
- Key Laboratory of Veterinary Biotechnology, Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Gia Lam, Ha Noi 12406, Vietnam; (T.A.N.); (H.T.N.); (A.D.L.); (A.T.V.); (P.T.H.); (T.T.L.); (H.T.N.); (H.T.T.N.); (H.L.T.L.); (D.A.T.B.)
| | - Jishu Shi
- Center on Biologics Development and Evaluation, Department of Anatomy and Physiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA; (L.W.); (R.M.); (Y.L.)
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14
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Liu H, Chen W, Zhang Y, Chen Y, Zhou J, Liu E, Dai S, Wang A. Fluorescence immunochromatographic detection of antibodies to the p72 protein of African swine fever virus. Int J Biol Macromol 2024; 279:134852. [PMID: 39159796 DOI: 10.1016/j.ijbiomac.2024.134852] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2024] [Revised: 08/16/2024] [Accepted: 08/16/2024] [Indexed: 08/21/2024]
Abstract
The African swine fever virus (ASFV), a highly contagious pathogen responsible for African swine fever (ASF), causes significant economic losses in the global pork industry. Due to its large and complex structure, ASFV remains refractory to commercial vaccine development, necessitating the creation of rapid, sensitive, and specific diagnostic tools for disease control. In this study, quantum dots were conjugated to ASFV p72 protein to establish a fluorescent immunochromatographic assay for detecting ASFV-specific antibodies. The assay test strips contained four adjacent pads arranged sequentially: a sample-application pad, a pad containing mobile antigen-probe conjugate, a nitrocellulose readout pad featuring a test line containing immobilised staphylococcal protein A and a control line containing immobilised monoclonal antibodies against the ASFV p72 protein, and an absorbent pad driving the directional flow of liquid via capillary action. The resulting fluorescence immunochromatographic assay demonstrated highly sensitive and specific ASFV antibody detection in under 15 min. Specificity testing showed no cross-reactivity with serum antibodies against other viruses and sensitivity surpassing that of commercial ASFV antibody colloidal gold immunochromatographic test strips. This novel approach offers rapid detection, excellent specificity, and high sensitivity, and supports the future development of fluorescent immunochromatographic test strips for ASFV antibody detection.
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Affiliation(s)
- Hongliang Liu
- School of Life Sciences, Zhengzhou University, Zhengzhou, 450001, Henan, China; Longhu Laboratory, Zhengzhou, Henan, China
| | - Wenjing Chen
- School of Life Sciences, Zhengzhou University, Zhengzhou, 450001, Henan, China
| | - Ying Zhang
- School of Life Sciences, Zhengzhou University, Zhengzhou, 450001, Henan, China; Longhu Laboratory, Zhengzhou, Henan, China
| | - Yumei Chen
- School of Life Sciences, Zhengzhou University, Zhengzhou, 450001, Henan, China; Longhu Laboratory, Zhengzhou, Henan, China
| | - Jingming Zhou
- School of Life Sciences, Zhengzhou University, Zhengzhou, 450001, Henan, China; Longhu Laboratory, Zhengzhou, Henan, China
| | - Enping Liu
- School of Life Sciences, Zhengzhou University, Zhengzhou, 450001, Henan, China; Longhu Laboratory, Zhengzhou, Henan, China
| | - Shuxia Dai
- School of Life Sciences, Zhengzhou University, Zhengzhou, 450001, Henan, China
| | - Aiping Wang
- School of Life Sciences, Zhengzhou University, Zhengzhou, 450001, Henan, China; Longhu Laboratory, Zhengzhou, Henan, China.
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15
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Spinard E, Dinhobl M, Erdelyan CNG, O’Dwyer J, Fenster J, Birtley H, Tesler N, Calvelage S, Leijon M, Steinaa L, O’Donnell V, Blome S, Bastos A, Ramirez-Medina E, Lacasta A, Ståhl K, Qiu H, Nilubol D, Tennakoon C, Maesembe C, Faburay B, Ambagala A, Williams D, Ribeca P, Borca MV, Gladue DP. A Standardized Pipeline for Assembly and Annotation of African Swine Fever Virus Genome. Viruses 2024; 16:1293. [PMID: 39205267 PMCID: PMC11359534 DOI: 10.3390/v16081293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Revised: 08/02/2024] [Accepted: 08/06/2024] [Indexed: 09/04/2024] Open
Abstract
Obtaining a complete good-quality sequence and annotation for the long double-stranded DNA genome of the African swine fever virus (ASFV) from next-generation sequencing (NGS) technology has proven difficult, despite the increasing availability of reference genome sequences and the increasing affordability of NGS. A gap analysis conducted by the global African swine fever research alliance (GARA) partners identified that a standardized, automatic pipeline for NGS analysis was urgently needed, particularly for new outbreak strains. Whilst there are several diagnostic and research labs worldwide that collect isolates of the ASFV from outbreaks, many do not have the capability to analyze, annotate, and format NGS data from outbreaks for submission to NCBI, and some publicly available ASFV genomes have missing or incorrect annotations. We developed an automated, standardized pipeline for the analysis of NGS reads that directly provides users with assemblies and annotations formatted for their submission to NCBI. This pipeline is freely available on GitHub and has been tested through the GARA partners by examining two previously sequenced ASFV genomes; this study also aimed to assess the accuracy and limitations of two strategies present within the pipeline: reference-based (Illumina reads) and de novo assembly (Illumina and Nanopore reads) strategies.
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Affiliation(s)
- Edward Spinard
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center (PIADC), P.O. Box 848, Greenport, NY 11944, USA; (E.S.); (M.D.)
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, National Bio and Agro-Defense Facility, Manhattan, KS 66502, USA
| | - Mark Dinhobl
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center (PIADC), P.O. Box 848, Greenport, NY 11944, USA; (E.S.); (M.D.)
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, National Bio and Agro-Defense Facility, Manhattan, KS 66502, USA
| | | | - James O’Dwyer
- National Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada
| | - Jacob Fenster
- Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, TN 37830, USA
| | - Hillary Birtley
- Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, TN 37830, USA
| | - Nicolas Tesler
- Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, TN 37830, USA
| | - Sten Calvelage
- Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, 17493 Greifswald-Insel Riems, Germany
| | - Mikael Leijon
- Department of Microbiology, Swedish Veterinary Agency, SE-751 89 Uppsala, Sweden
| | - Lucilla Steinaa
- Animal and Human Heath Program, International Livestock Research Institute, Nairobi 00100, Kenya
| | - Vivian O’Donnell
- U.S. Department of Agriculture, Animal and Plant Inspection Service, Plum Island Animal Disease Center, Greenport, NY 11944, USA
| | - Sandra Blome
- Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, 17493 Greifswald-Insel Riems, Germany
| | - Armanda Bastos
- Department of Veterinary Tropical Diseases, Faculty of Veterinary Science, University of Pretoria, Onderstepoort 0110, South Africa
| | - Elizabeth Ramirez-Medina
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center (PIADC), P.O. Box 848, Greenport, NY 11944, USA; (E.S.); (M.D.)
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, National Bio and Agro-Defense Facility, Manhattan, KS 66502, USA
| | - Anna Lacasta
- Animal and Human Heath Program, International Livestock Research Institute, Nairobi 00100, Kenya
| | - Karl Ståhl
- Department of Epidemiology, Surveillance and Risk assessment, Swedish Veterinary Agency, SE-751 89 Uppsala, Sweden
| | - Huaji Qiu
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-Reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 100081, China
| | - Dachrit Nilubol
- Swine Viral Evolution and Vaccine Development Research Unit, Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Henry Dunant Road, Pathumwan, Bangkok 10330, Thailand
| | | | - Charles Maesembe
- Department of Zoology, Entomology and Fisheries Sciences, School of Biosciences, College of Natural Sciences, Makerere University, Kampala P.O. Box 7062, Uganda
| | - Bonto Faburay
- U.S. Department of Agriculture, Animal and Plant Inspection Service, Plum Island Animal Disease Center, Greenport, NY 11944, USA
| | - Aruna Ambagala
- National Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada
| | - David Williams
- CSIRO, Australian Centre for Disease Preparedness, Geelong, VIC 3220, Australia
| | - Paolo Ribeca
- UK Health Security Agency, London E14 4PU, UK
- Biomathematics and Statistics Scotland, Edinburgh EH9 3FD, UK
| | - Manuel V. Borca
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center (PIADC), P.O. Box 848, Greenport, NY 11944, USA; (E.S.); (M.D.)
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, National Bio and Agro-Defense Facility, Manhattan, KS 66502, USA
| | - Douglas P. Gladue
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center (PIADC), P.O. Box 848, Greenport, NY 11944, USA; (E.S.); (M.D.)
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, National Bio and Agro-Defense Facility, Manhattan, KS 66502, USA
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Rai A, Spinard E, Osei-Bonsu J, Meyers A, Dinhobl M, O’Donnell V, Ababio PT, Tawiah-Yingar D, Arthur D, Baah D, Ramirez-Medina E, Espinoza N, Valladares A, Faburay B, Ambagala A, Odoom T, Borca MV, Gladue DP. A Retrospective Analysis Reveals That the 2021 Outbreaks of African Swine Fever Virus in Ghana Were Caused by Two Distinct Genotypes. Viruses 2024; 16:1265. [PMID: 39205239 PMCID: PMC11360390 DOI: 10.3390/v16081265] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Revised: 07/23/2024] [Accepted: 07/24/2024] [Indexed: 09/04/2024] Open
Abstract
African swine fever virus (ASFV) is the causative agent of African swine fever (ASF), a highly infectious and lethal disease of domesticated swine. Outbreaks of ASF have been mostly restricted to the continent of Africa. The outbreaks that have occurred outside of Africa were controlled by extensive depopulation of the domesticated pig population. However, in 2007, an outbreak occurred in the country of Georgia, where ASFV infected wild pigs and quickly spread across eastern Europe. Since the reintroduction of ASF into Europe, variants of the current pandemic strain, ASFV Georgia 2007/01 (ASFV-G), which is classified as Genotype 2 based on p72 sequencing, have been reported in countries within western Europe, Asia, and the island of Hispaniola. Additionally, isolates collected in 2020 confirmed the presence of variants of ASFV-G in Nigeria. Recently, we reported similar variants of ASFV-G collected from domestic pigs suspected of dying of ASF in Ghana in 2022. Here, we retroactively report, based on full-length sequencing, that similar variants were present in Ghana in 2021. The SNP analysis revealed derivatives of ASFV with distinct genetic markers. Furthermore, we identified three full-length ASFV genomes as Genotype 1, indicating that there were two genotypes circulating in proximity during the 2021 ASF outbreaks in Ghana.
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Affiliation(s)
- Ayushi Rai
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, NY 11957, USA; (A.R.); (E.S.); (A.M.); (M.D.); (E.R.-M.); (N.E.); (A.V.)
- Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, TN 37830, USA
| | - Edward Spinard
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, NY 11957, USA; (A.R.); (E.S.); (A.M.); (M.D.); (E.R.-M.); (N.E.); (A.V.)
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, National Bio and Agro-Defense Facility, Manhattan, KS 66502, USA
| | - Jehadi Osei-Bonsu
- Accra Veterinary Laboratory of Veterinary Services Directorate, Accra P.O. Box GA184, Ghana; (J.O.-B.); (P.T.A.); (D.T.-Y.); (D.A.); (D.B.); (T.O.)
- Department of Liberal Arts & Sciences, University of Illinois at Urbana-Champaign, Champaign, IL 61820, USA
| | - Amanda Meyers
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, NY 11957, USA; (A.R.); (E.S.); (A.M.); (M.D.); (E.R.-M.); (N.E.); (A.V.)
- Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, TN 37830, USA
| | - Mark Dinhobl
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, NY 11957, USA; (A.R.); (E.S.); (A.M.); (M.D.); (E.R.-M.); (N.E.); (A.V.)
| | - Vivian O’Donnell
- U.S. Department of Agriculture, Animal and Plant Inspection Service, Plum Island Animal Disease Center, Greenport, NY 11944, USA;
| | - Patrick T. Ababio
- Accra Veterinary Laboratory of Veterinary Services Directorate, Accra P.O. Box GA184, Ghana; (J.O.-B.); (P.T.A.); (D.T.-Y.); (D.A.); (D.B.); (T.O.)
| | - Daniel Tawiah-Yingar
- Accra Veterinary Laboratory of Veterinary Services Directorate, Accra P.O. Box GA184, Ghana; (J.O.-B.); (P.T.A.); (D.T.-Y.); (D.A.); (D.B.); (T.O.)
| | - Daniel Arthur
- Accra Veterinary Laboratory of Veterinary Services Directorate, Accra P.O. Box GA184, Ghana; (J.O.-B.); (P.T.A.); (D.T.-Y.); (D.A.); (D.B.); (T.O.)
| | - Daniel Baah
- Accra Veterinary Laboratory of Veterinary Services Directorate, Accra P.O. Box GA184, Ghana; (J.O.-B.); (P.T.A.); (D.T.-Y.); (D.A.); (D.B.); (T.O.)
| | - Elizabeth Ramirez-Medina
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, NY 11957, USA; (A.R.); (E.S.); (A.M.); (M.D.); (E.R.-M.); (N.E.); (A.V.)
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, National Bio and Agro-Defense Facility, Manhattan, KS 66502, USA
| | - Nallely Espinoza
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, NY 11957, USA; (A.R.); (E.S.); (A.M.); (M.D.); (E.R.-M.); (N.E.); (A.V.)
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, National Bio and Agro-Defense Facility, Manhattan, KS 66502, USA
| | - Alyssa Valladares
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, NY 11957, USA; (A.R.); (E.S.); (A.M.); (M.D.); (E.R.-M.); (N.E.); (A.V.)
- Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, TN 37830, USA
| | - Bonto Faburay
- U.S. Department of Agriculture, Animal and Plant Inspection Service, National Bio and Agro-Defense Facility, Greenport, NY 11944, USA;
| | - Aruna Ambagala
- National Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada;
| | - Theophilus Odoom
- Accra Veterinary Laboratory of Veterinary Services Directorate, Accra P.O. Box GA184, Ghana; (J.O.-B.); (P.T.A.); (D.T.-Y.); (D.A.); (D.B.); (T.O.)
| | - Manuel V. Borca
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, NY 11957, USA; (A.R.); (E.S.); (A.M.); (M.D.); (E.R.-M.); (N.E.); (A.V.)
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, National Bio and Agro-Defense Facility, Manhattan, KS 66502, USA
| | - Douglas P. Gladue
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, NY 11957, USA; (A.R.); (E.S.); (A.M.); (M.D.); (E.R.-M.); (N.E.); (A.V.)
- U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, National Bio and Agro-Defense Facility, Manhattan, KS 66502, USA
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17
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Tesfagaber W, Lan D, Wang W, Zhao R, Yin L, Yang M, Zhu Y, Sun E, Liu R, Lin W, Bu Z, Li F, Zhao D. Identification of two novel B cell epitopes on E184L protein of African swine fever virus using monoclonal antibodies. Virus Res 2024; 346:199412. [PMID: 38838820 PMCID: PMC11222816 DOI: 10.1016/j.virusres.2024.199412] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Revised: 05/31/2024] [Accepted: 06/02/2024] [Indexed: 06/07/2024]
Abstract
African swine fever virus (ASFV) is a large double-stranded DNA virus with a complex structural architecture and encodes more than 150 proteins, where many are with unknown functions. E184L has been reported as one of the immunogenic ASFV proteins that may contribute to ASFV pathogenesis and immune evasion. However, the antigenic epitopes of E184L are not yet characterized. In this study, recombinant E184L protein was expressed in prokaryotic expression system and four monoclonal antibodies (mAbs), designated as 1A10, 2D2, 3H6, and 4C10 were generated. All four mAbs reacted specifically with ASFV infected cells. To identify the epitopes of the mAbs, a series of overlapped peptides of E184L were designed and expressed as maltose binding fusion proteins. Accordingly, the expressed fusion proteins were probed with each E184L mAb separately by using Western blot. Following a fine mapping, the minimal linear epitope recognized by mAb 1A10 was identified as 119IQRQGFL125, and mAbs 2D2, 3H6, and 4C10 recognized a region located between 153DPTEFF158. Alignment of amino acids of E184L revealed that the two linear epitopes are highly conserved among different ASFV isolates. Furthermore, the potential application of the two epitopes in ASFV diagnosis was assessed through epitope-based ELISA using 24 ASFV positive and 18 negative pig serum and the method were able to distinguish positive and negative samples, indicating the two epitopes are dominant antigenic sites. To our knowledge, this is the first study to characterize the B cell epitopes of the antigenic E184L protein of ASFV, offering valuable tools for future research, as well as laying a foundation for serological diagnosis and epitope-based marker vaccine development.
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Affiliation(s)
- Weldu Tesfagaber
- State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, PR China
| | - Desong Lan
- Liaoning Center for Animal Disease Control and Prevention, Shenyang 110136, PR China
| | - Wan Wang
- State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, PR China
| | - Rui Zhao
- State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, PR China; College of Veterinary Medicine, Xinjiang Agricultural University, Urumqi 830052, PR China
| | - Li Yin
- State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, PR China
| | - Mingyang Yang
- Liaoning Center for Animal Disease Control and Prevention, Shenyang 110136, PR China
| | - Yuanmao Zhu
- State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, PR China
| | - Encheng Sun
- State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, PR China
| | - Renqiang Liu
- State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, PR China
| | - Wenjun Lin
- State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, PR China
| | - Zhigao Bu
- State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, PR China
| | - Fang Li
- State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, PR China.
| | - Dongming Zhao
- State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, PR China; College of Veterinary Medicine, Xinjiang Agricultural University, Urumqi 830052, PR China.
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18
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Venkateswaran D, Prakash A, Nguyen QA, Salman M, Suntisukwattana R, Atthaapa W, Tantituvanont A, Lin H, Songkasupa T, Nilubol D. Comprehensive Characterization of the Genetic Landscape of African Swine Fever Virus: Insights into Infection Dynamics, Immunomodulation, Virulence and Genes with Unknown Function. Animals (Basel) 2024; 14:2187. [PMID: 39123713 PMCID: PMC11311002 DOI: 10.3390/ani14152187] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Revised: 07/19/2024] [Accepted: 07/24/2024] [Indexed: 08/12/2024] Open
Abstract
African Swine Fever (ASF) is a lethal contagious hemorrhagic viral disease affecting the swine population. The causative agent is African Swine Fever Virus (ASFV). There is no treatment or commercial vaccine available at present. This virus poses a significant threat to the global swine industry and economy, with 100% mortality rate in acute cases. ASFV transmission occurs through both direct and indirect contact, with control measures limited to early detection, isolation, and culling of infected pigs. ASFV exhibits a complex genomic structure and encodes for more than 50 structural and 100 non-structural proteins and has 150 to 167 open reading frames (ORFs). While many of the proteins are non-essential for viral replication, they play crucial roles in mediating with the host to ensure longevity and transmission of virus in the host. The dynamic nature of ASFV research necessitates constant updates, with ongoing exploration of various genes and their functions, vaccine development, and other ASF-related domains. This comprehensive review aims to elucidate the structural and functional roles of both newly discovered and previously recorded genes involved in distinct stages of ASFV infection and immunomodulation. Additionally, the review discusses the virulence genes and genes with unknown functions, and proposes future interventions.
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Affiliation(s)
- Dhithya Venkateswaran
- Swine Viral Evolution and Vaccine Development Research Unit, Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok 10330, Thailand
| | - Anwesha Prakash
- Swine Viral Evolution and Vaccine Development Research Unit, Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok 10330, Thailand
| | - Quynh Anh Nguyen
- Swine Viral Evolution and Vaccine Development Research Unit, Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok 10330, Thailand
| | - Muhammad Salman
- Swine Viral Evolution and Vaccine Development Research Unit, Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok 10330, Thailand
| | - Roypim Suntisukwattana
- Swine Viral Evolution and Vaccine Development Research Unit, Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok 10330, Thailand
| | - Waranya Atthaapa
- Swine Viral Evolution and Vaccine Development Research Unit, Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok 10330, Thailand
| | - Angkana Tantituvanont
- Department of Pharmaceutic and Industrial Pharmacies, Faculty of Pharmaceutical Sciences, Chulalongkorn University, Bangkok 10330, Thailand
| | - Hongyao Lin
- MSD Animal Health Innovation Pte Ltd., Singapore 718847, Singapore
| | - Tapanut Songkasupa
- National Institute of Animal Health, Department of Livestock Development, 50/2 Kasetklang, Phahonyothin 45-15, Chatuchak, Bangkok 10900, Thailand
| | - Dachrit Nilubol
- Swine Viral Evolution and Vaccine Development Research Unit, Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok 10330, Thailand
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Portugal R, Goldswain H, Moore R, Tully M, Harris K, Corla A, Flannery J, Dixon LK, Netherton CL. Six adenoviral vectored African swine fever virus genes protect against fatal disease caused by genotype I challenge. J Virol 2024; 98:e0062224. [PMID: 38953377 PMCID: PMC11264932 DOI: 10.1128/jvi.00622-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Accepted: 06/03/2024] [Indexed: 07/04/2024] Open
Abstract
African swine fever virus causes a lethal hemorrhagic disease in domestic swine and wild boar for which currently licensed commercial vaccines are only available in Vietnam. Development of subunit vaccines is complicated by the lack of information on protective antigens as well as suitable delivery systems. Our previous work showed that a pool of eight African swine fever virus genes vectored using an adenovirus prime and modified vaccinia virus boost could prevent fatal disease after challenge with a virulent genotype I isolate of the virus. Here, we identify antigens within this pool of eight that are essential for the observed protection and demonstrate that adenovirus-prime followed by adenovirus-boost can also induce protective immune responses against genotype I African swine fever virus. Immunization with a pool of adenoviruses expressing individual African swine fever virus genes partially tailored to genotype II virus did not protect against challenge with genotype II Georgia 2007/1 strain, suggesting that different antigens may be required to induce cross-protection for genetically distinct viruses. IMPORTANCE African swine fever virus causes a lethal hemorrhagic disease in domestic pigs and has killed millions of animals across Europe and Asia since 2007. Development of safe and effective subunit vaccines against African swine fever has been problematic due to the complexity of the virus and a poor understanding of protective immunity. In a previous study, we demonstrated that a complex combination of eight different virus genes delivered using two different viral vector vaccine platforms protected domestic pigs from fatal disease. In this study, we show that three of the eight genes are required for protection and that one viral vector is sufficient, significantly reducing the complexity of the vaccine. Unfortunately, this combination did not protect against the current outbreak strain of African swine fever virus, suggesting that more work to identify immunogenic and protective viral proteins is required to develop a truly effective African swine fever vaccine.
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Affiliation(s)
| | | | - Rebecca Moore
- The Pirbright Institute, Woking, Surrey, United Kingdom
| | - Matthew Tully
- The Pirbright Institute, Woking, Surrey, United Kingdom
| | - Katie Harris
- The Pirbright Institute, Woking, Surrey, United Kingdom
| | - Amanda Corla
- The Pirbright Institute, Woking, Surrey, United Kingdom
| | - John Flannery
- The Pirbright Institute, Woking, Surrey, United Kingdom
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20
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Chernyshev RS, Igolkin AS, Shotin AR, Zinyakov NG, Kolbin IS, Sadchikova AS, Lavrentiev IA, Gruzdev KN, Mazloum A. Spatio-temporal clustering of African swine fever virus (Asfarviridae: Asfivirus) circulating in the Kaliningrad region based on three genome markers. Vopr Virusol 2024; 69:241-254. [PMID: 38996373 DOI: 10.36233/0507-4088-231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Indexed: 07/14/2024]
Abstract
INTRODUCTION The rapid spread of African swine fever in the Kaliningrad region makes it necessary to use the methods of molecular epidemiology to determine the dynamics and direction of ASF spread in this region of Russia. The aim of the study was to determine single nucleotide polymorphisms within molecular markers K145R, O174L and MGF 505-5R of ASFVs isolated in Kaliningrad region and to study the circulating of the pathogen in European countries by subgenotyping and spatio-temporal clustering analysis. MATERIALS AND METHODS Blood samples from living domestic pigs and organs from dead domestic pigs and wild boars, collected in the Kaliningrad region between 2017 and 2022 were used. Virus isolation was carried out in porcine bone-marrow primary cell culture. Amplicons of genome markers were amplified by PCR with electrophoretic detection and subsequent extraction of fragments from agarose gel. Sequencing was performed using the Sanger method. RESULTS The circulation of two genetic clusters of ASFV isolates on the territory of the Kaliningrad has been established: epidemic (K145R-III, MGF 505-5R-II, O174L-I - 94.3% of the studied isolates) and sporadic (K145R-II, MGF 505-5R-II, O174L-I - 5.7%). CONCLUSION The broaden molecular genetic surveillance of ASFV isolates based on sequencing of genome markers is necessary in the countries of the Eurasian continent to perform a more detailed analysis of ASF spread between countries and within regions.
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Affiliation(s)
| | | | - A R Shotin
- Federal Center for Animal Health (ARRIAH)
| | | | - I S Kolbin
- Federal Center for Animal Health (ARRIAH)
| | | | | | | | - A Mazloum
- Federal Center for Animal Health (ARRIAH)
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21
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Huang Z, Mai Z, Kong C, You J, Lin S, Gao C, Zhang W, Chen X, Xie Q, Wang H, Tang S, Zhou P, Gong L, Zhang G. African swine fever virus pB475L evades host antiviral innate immunity via targeting STAT2 to inhibit IFN-I signaling. J Biol Chem 2024; 300:107472. [PMID: 38879005 PMCID: PMC11328877 DOI: 10.1016/j.jbc.2024.107472] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 05/16/2024] [Accepted: 06/07/2024] [Indexed: 07/08/2024] Open
Abstract
African swine fever virus (ASFV) causes severe disease in domestic pigs and wild boars, seriously threatening the development of the global pig industry. Type I interferon (IFN-I) is an important component of innate immunity, inducing the transcription and expression of antiviral cytokines by activating Janus-activated kinase-signal transducer and activator of transcription (STAT). However, the underlying molecular mechanisms by which ASFV antagonizes IFN-I signaling have not been fully elucidated. Therefore, using coimmunoprecipitation, confocal microscopy, and dual luciferase reporter assay methods, we investigated these mechanisms and identified a novel ASFV immunosuppressive protein, pB475L, which interacts with the C-terminal domain of STAT2. Consequently, pB475L inhibited IFN-I signaling by inhibiting STAT1 and STAT2 heterodimerization and nuclear translocation. Furthermore, we constructed an ASFV-B475L7PM mutant strain by homologous recombination, finding that ASFV-B475L7PM attenuated the inhibitory effects on IFN-I signaling compared to ASFV-WT. In summary, this study reveals a new mechanism by which ASFV impairs host innate immunity.
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Affiliation(s)
- Zhao Huang
- Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China; Guangdong Provincial Key Laboratory of Utilization and Conservation of Food and Medicinal Resources in Northern Region, Shaoguan University, Shaoguan, China; African Swine Fever Regional Laboratory of China, South China Agricultural University, Guangzhou, China
| | - Zhanzhuo Mai
- Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China; African Swine Fever Regional Laboratory of China, South China Agricultural University, Guangzhou, China
| | - Cuiying Kong
- Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China
| | - Jianyi You
- Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China; African Swine Fever Regional Laboratory of China, South China Agricultural University, Guangzhou, China
| | - Sizhan Lin
- Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China; African Swine Fever Regional Laboratory of China, South China Agricultural University, Guangzhou, China
| | - Chenyang Gao
- Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China; African Swine Fever Regional Laboratory of China, South China Agricultural University, Guangzhou, China
| | - WenBo Zhang
- Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China; African Swine Fever Regional Laboratory of China, South China Agricultural University, Guangzhou, China
| | - Xiongnan Chen
- Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China; Guangdong Provincial Key Laboratory of Utilization and Conservation of Food and Medicinal Resources in Northern Region, Shaoguan University, Shaoguan, China; African Swine Fever Regional Laboratory of China, South China Agricultural University, Guangzhou, China
| | - Qingmei Xie
- College of Animal Science, South China Agricultural University, Guangzhou, China
| | - Heng Wang
- Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China; African Swine Fever Regional Laboratory of China, South China Agricultural University, Guangzhou, China; Research Center for African Swine Fever Prevention and Control, South China Agricultural University, Guangzhou, China
| | - Shengqiu Tang
- Guangdong Provincial Key Laboratory of Utilization and Conservation of Food and Medicinal Resources in Northern Region, Shaoguan University, Shaoguan, China
| | - Pei Zhou
- Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China; African Swine Fever Regional Laboratory of China, South China Agricultural University, Guangzhou, China.
| | - Lang Gong
- Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China; African Swine Fever Regional Laboratory of China, South China Agricultural University, Guangzhou, China.
| | - Guihong Zhang
- Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China; Research Center for African Swine Fever Prevention and Control, South China Agricultural University, Guangzhou, China; Maoming Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong, China; Key Laboratory of Animal Vaccine Development, Ministry of Agriculture and Rural Affairs, Guangzhou, China.
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22
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Shen D, Zhang G, Weng X, Liu R, Liu Z, Sheng X, Zhang Y, Liu Y, Mu Y, Zhu Y, Sun E, Zhang J, Li F, Xia C, Ge J, Liu Z, Bu Z, Zhao D. A genome-wide CRISPR/Cas9 knockout screen identifies TMEM239 as an important host factor in facilitating African swine fever virus entry into early endosomes. PLoS Pathog 2024; 20:e1012256. [PMID: 39024394 PMCID: PMC11288436 DOI: 10.1371/journal.ppat.1012256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Revised: 07/30/2024] [Accepted: 05/13/2024] [Indexed: 07/20/2024] Open
Abstract
African swine fever (ASF) is a highly contagious, fatal disease of pigs caused by African swine fever virus (ASFV). The complexity of ASFV and our limited understanding of its interactions with the host have constrained the development of ASFV vaccines and antiviral strategies. To identify host factors required for ASFV replication, we developed a genome-wide CRISPR knockout (GeCKO) screen that contains 186,510 specific single guide RNAs (sgRNAs) targeting 20,580 pig genes and used genotype II ASFV to perform the GeCKO screen in wild boar lung (WSL) cells. We found that knockout of transmembrane protein 239 (TMEM239) significantly reduced ASFV replication. Further studies showed that TMEM239 interacted with the early endosomal marker Rab5A, and that TMEM239 deletion affected the co-localization of viral capsid p72 and Rab5A shortly after viral infection. An ex vivo study showed that ASFV replication was significantly reduced in TMEM239-/- peripheral blood mononuclear cells from TMEM239 knockout piglets. Our study identifies a novel host factor required for ASFV replication by facilitating ASFV entry into early endosomes and provides insights for the development of ASF-resistant breeding.
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Affiliation(s)
- Dongdong Shen
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
| | - Guigen Zhang
- Institute of Human Virology, Key Laboratory of Tropical Disease Control of Ministry of Education, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, China
| | - Xiaogang Weng
- Key Laboratory of Animal Cellular and Genetics Engineering of Heilongjiang Province, Engineering Research Center of Intelligent Breeding and Farming of Pig in Northern Cold Region, College of Life Science, Northeast Agricultural University, Harbin, China
| | - Renqiang Liu
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China
| | - Zhiheng Liu
- Peking-Tsinghua Center for Life Sciences, School of Life Sciences, Peking University, Beijing, China
| | - Xiangpeng Sheng
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China
| | - Yuting Zhang
- Key Laboratory of Animal Cellular and Genetics Engineering of Heilongjiang Province, Engineering Research Center of Intelligent Breeding and Farming of Pig in Northern Cold Region, College of Life Science, Northeast Agricultural University, Harbin, China
| | - Yan Liu
- Key Laboratory of Animal Cellular and Genetics Engineering of Heilongjiang Province, Engineering Research Center of Intelligent Breeding and Farming of Pig in Northern Cold Region, College of Life Science, Northeast Agricultural University, Harbin, China
| | - Yanshuang Mu
- Key Laboratory of Animal Cellular and Genetics Engineering of Heilongjiang Province, Engineering Research Center of Intelligent Breeding and Farming of Pig in Northern Cold Region, College of Life Science, Northeast Agricultural University, Harbin, China
| | - Yuanmao Zhu
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China
| | - Encheng Sun
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China
| | - Jiwen Zhang
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China
| | - Fang Li
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China
| | - Changyou Xia
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China
| | - Junwei Ge
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
| | - Zhonghua Liu
- Key Laboratory of Animal Cellular and Genetics Engineering of Heilongjiang Province, Engineering Research Center of Intelligent Breeding and Farming of Pig in Northern Cold Region, College of Life Science, Northeast Agricultural University, Harbin, China
| | - Zhigao Bu
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China
| | - Dongming Zhao
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China
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23
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Su G, Yang X, Lin Q, Su G, Liu J, Huang L, Chen W, Wei W, Chen J. Fangchinoline Inhibits African Swine Fever Virus Replication by Suppressing the AKT/mTOR/NF-κB Signaling Pathway in Porcine Alveolar Macrophages. Int J Mol Sci 2024; 25:7178. [PMID: 39000284 PMCID: PMC11241579 DOI: 10.3390/ijms25137178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2024] [Revised: 05/22/2024] [Accepted: 05/24/2024] [Indexed: 07/16/2024] Open
Abstract
African swine fever (ASF), caused by the African swine fever virus (ASFV), is one of the most important infectious diseases that cause high morbidity and mortality in pigs and substantial economic losses to the pork industry of affected countries due to the lack of effective vaccines. The need to develop alternative robust antiviral countermeasures, especially anti-ASFV agents, is of the utmost urgency. This study shows that fangchinoline (FAN), a bisbenzylisoquinoline alkaloid found in the roots of Stephania tetrandra of the family Menispermaceae, significantly inhibits ASFV replication in porcine alveolar macrophages (PAMs) at micromolar concentrations (IC50 = 1.66 µM). Mechanistically, the infection of ASFV triggers the AKT/mTOR/NF-κB signaling pathway. FAN significantly inhibits ASFV-induced activation of such pathways, thereby suppressing viral replication. Such a mechanism was confirmed using an AKT inhibitor MK2206 as it inhibited AKT phosphorylation and ASFV replication in PAMs. Altogether, the results suggest that the AKT/mTOR pathway could potentially serve as a treatment strategy for combating ASFV infection and that FAN could potentially emerge as an effective novel antiviral agent against ASFV infections and deserves further in vivo antiviral evaluations.
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Affiliation(s)
- Guanming Su
- Guangdong Provincial Key Laboratory of Veterinary Pharmaceutics Development and Safety Evaluation, Guangzhou 510642, China
- College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China
| | - Xiaoqun Yang
- Guangdong Provincial Key Laboratory of Veterinary Pharmaceutics Development and Safety Evaluation, Guangzhou 510642, China
- College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China
| | - Qisheng Lin
- Guangdong Provincial Key Laboratory of Veterinary Pharmaceutics Development and Safety Evaluation, Guangzhou 510642, China
- College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China
| | - Guoming Su
- Guangdong Provincial Key Laboratory of Veterinary Pharmaceutics Development and Safety Evaluation, Guangzhou 510642, China
- College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China
| | - Jinyi Liu
- Guangdong Provincial Key Laboratory of Veterinary Pharmaceutics Development and Safety Evaluation, Guangzhou 510642, China
- College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China
| | - Li Huang
- State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China
| | - Weisan Chen
- Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, VIC 3086, Australia
| | - Wenkang Wei
- State Key Laboratory of Swine and Poultry Breeding Industry, Agro-Biological Gene Research Center of Guangdong Academy of Agricultural Sciences, Guangzhou 510642, China
| | - Jianxin Chen
- Guangdong Provincial Key Laboratory of Veterinary Pharmaceutics Development and Safety Evaluation, Guangzhou 510642, China
- College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China
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24
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Fernandez-Colorado CP, Kim WH, Flores RA, Min W. African Swine Fever in the Philippines: A Review on Surveillance, Prevention, and Control Strategies. Animals (Basel) 2024; 14:1816. [PMID: 38929435 PMCID: PMC11200829 DOI: 10.3390/ani14121816] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2024] [Revised: 06/06/2024] [Accepted: 06/16/2024] [Indexed: 06/28/2024] Open
Abstract
African swine fever (ASF), a highly contagious disease of swine, has posed a significant global threat to the swine industry. As an archipelago, the Philippines has a geographic advantage when it comes to the risk of ASF transmission. However, since its introduction to the Philippines in 2019, it has proliferated not only in backyard and commercial farms but also in wild pig populations. While certain parts of the country were more affected than others, the epidemiologic features of ASF necessitate that all affected areas must be closely monitored and that confirmed cases be treated with the utmost care. With the very limited data on ASF epidemiology and surveillance in the Philippines, future efforts to combat ASF must place even greater emphasis on improved prevention and control strategies. It is worth mentioning that the government's efforts toward comprehensive ASF surveillance and epidemiological investigation into the possible ASFV sources or transmission pathways are the most important measures in the prevention and control of ASF outbreaks. This review article provides a comprehensive overview of the current swine industry and ASF situation in the Philippines, which includes its epidemiology, surveillance, prevention, and control strategies.
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Affiliation(s)
- Cherry P. Fernandez-Colorado
- Department of Veterinary Paraclinical Sciences, College of Veterinary Medicine, University of the Philippines Los Baños, Los Baños 4031, Laguna, Philippines
| | - Woo Hyun Kim
- College of Veterinary Medicine & Institute of Animal Medicine, Gyeongsang National University, Jinju 52828, Republic of Korea; (W.H.K.); (R.A.F.); (W.M.)
| | - Rochelle A. Flores
- College of Veterinary Medicine & Institute of Animal Medicine, Gyeongsang National University, Jinju 52828, Republic of Korea; (W.H.K.); (R.A.F.); (W.M.)
| | - Wongi Min
- College of Veterinary Medicine & Institute of Animal Medicine, Gyeongsang National University, Jinju 52828, Republic of Korea; (W.H.K.); (R.A.F.); (W.M.)
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25
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Chernyshev R, Igolkin A, van Schalkwyk A, Zinyakov N, Kolbin I, Shotin A, Korennoy F, Sprygin A, Mazloum A. A proposed update of African swine fever virus (genotype II) subgenotyping based on the central variable region (CVR) of Russian isolates. Arch Virol 2024; 169:147. [PMID: 38879716 DOI: 10.1007/s00705-024-06064-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2023] [Accepted: 05/06/2024] [Indexed: 07/11/2024]
Abstract
African swine fever virus (ASFV) isolates are grouped and tracked through analysis of their central variable region (CVR) sequences. In this study, sequences of 70 ASFV isolates collected from different regions of Russia between 2018 and 2022 were analyzed. The analysis based on the CVR sequences indicated that the isolates belonged to three distinct groups. Group 1 shared 100% sequence identity to the isolate Georgia 2007/1. Group 5 had a C > A single-nucleotide polymorphism (SNP) at position 601, while group 13 is new and unique to the Far East of Russia, with five isolates from the Amur, Khabarovsk, and Primorsky regions. These findings demonstrate a new approach to phylogenomics and cladistics of ASFV isolates within genotype II on the basis of the CVR.
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Affiliation(s)
| | - Alexey Igolkin
- Federal Center for Animal Health, 600901, Vladimir, Russia
| | - Antoinette van Schalkwyk
- Agricultural Research Council-Onderstepoort Veterinary Institute, 100 Old Soutpan Road, 0110, Onderstepoort, South Africa
- Department of Biotechnology, University of the Western Cape, Robert Sobukwe Road, 7535, Bellville, South Africa
| | | | - Ivan Kolbin
- Federal Center for Animal Health, 600901, Vladimir, Russia
| | - Andrey Shotin
- Federal Center for Animal Health, 600901, Vladimir, Russia
| | - Fedor Korennoy
- Federal Center for Animal Health, 600901, Vladimir, Russia
| | | | - Ali Mazloum
- Federal Center for Animal Health, 600901, Vladimir, Russia.
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26
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Chen S, Wang T, Luo R, Lu Z, Lan J, Sun Y, Fu Q, Qiu HJ. Genetic Variations of African Swine Fever Virus: Major Challenges and Prospects. Viruses 2024; 16:913. [PMID: 38932205 PMCID: PMC11209373 DOI: 10.3390/v16060913] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2024] [Revised: 05/26/2024] [Accepted: 05/30/2024] [Indexed: 06/28/2024] Open
Abstract
African swine fever (ASF) is a contagious viral disease affecting pigs and wild boars. It typically presents as a hemorrhagic fever but can also manifest in various forms, ranging from acute to asymptomatic. ASF has spread extensively globally, significantly impacting the swine industry. The complex and highly variable character of the ASFV genome makes vaccine development and disease surveillance extremely difficult. The overall trend in ASFV evolution is towards decreased virulence and increased transmissibility. Factors such as gene mutation, viral recombination, and the strain-specificity of virulence-associated genes facilitate viral variations. This review deeply discusses the influence of these factors on viral immune evasion, pathogenicity, and the ensuing complexities encountered in vaccine development, disease detection, and surveillance. The ultimate goal of this review is to thoroughly explore the genetic evolution patterns and variation mechanisms of ASFV, providing a theoretical foundation for advancement in vaccine and diagnostic technologies.
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Affiliation(s)
- Shengmei Chen
- College of Life Science and Engineering, Foshan University, Foshan 528231, China
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-Reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China
| | - Tao Wang
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-Reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China
| | - Rui Luo
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-Reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China
| | - Zhanhao Lu
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-Reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China
| | - Jing Lan
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-Reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China
- College of Animal Sciences, Yangtze University, Jingzhou 434023, China
| | - Yuan Sun
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-Reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China
| | - Qiang Fu
- College of Life Science and Engineering, Foshan University, Foshan 528231, China
| | - Hua-Ji Qiu
- College of Life Science and Engineering, Foshan University, Foshan 528231, China
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-Reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China
- College of Animal Sciences, Yangtze University, Jingzhou 434023, China
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27
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Hu Z, Lai R, Tian X, Guan R, Li X. A duplex fluorescent quantitative PCR assay to distinguish the genotype I, II and I/II recombinant strains of African swine fever virus in China. Front Vet Sci 2024; 11:1422757. [PMID: 38895720 PMCID: PMC11183790 DOI: 10.3389/fvets.2024.1422757] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Accepted: 05/23/2024] [Indexed: 06/21/2024] Open
Abstract
African swine fever (ASF) is a severe, hemorrhagic, and highly contagious disease caused by the African swine fever virus (ASFV) in both domestic pigs and wild boars. In China, ASFV has been present for over six years, with three genotypes of strains prevalent in field conditions: genotype I, genotype II, and genotype I/II recombinant strains. In order to differentiate among these three ASFV genotypes, a duplex fluorescent quantitative PCR method was established using specific probes and primers designed based on viral genes MGF_110-1L and O61R from ASFV strains reported in the GenBank database. Following optimization of reaction conditions, a duplex fluorescent quantitative PCR method was successfully developed. This method demonstrated no cross-reactivity with porcine epidemic diarrhea virus (PEDV), transmissible gastroenteritis virus (TGEV), porcine reproductive and respiratory syndrome virus (PRRSV), classic swine fever virus (CSFV), porcine pseudorabies virus (PRV), porcine circovirus 2 (PCV2), porcine circovirus 3 (PCV3), highlighting its specificity. Sensitivity analysis revealed that the limits of detection (LODs) of this method were 2.95 × 10-1 copies/μL for the MGF_110-1L gene and 2.95 × 100 copies/μL for the O61R gene. The inter- and intra-group coefficients of variation were both <1%, indicating high reproducibility. In summary, the establishment of this duplex fluorescent quantitative PCR method not only addresses the identification of the ASFV recombinant strains but also allows for simultaneous identification of the three epidemic genotype strains.
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Affiliation(s)
- Zhiqiang Hu
- Shandong Engineering Laboratory of Pig and Poultry Healthy Breeding and Disease Diagnosis Technology, Xiajin New Hope Liuhe Agriculture and Animal Husbandry Co., Ltd., Dezhou, China
- College of Animal Science, Xichang University, Xichang, China
| | - Ranran Lai
- Shandong Engineering Laboratory of Pig and Poultry Healthy Breeding and Disease Diagnosis Technology, Xiajin New Hope Liuhe Agriculture and Animal Husbandry Co., Ltd., Dezhou, China
| | - Xiaogang Tian
- Shandong Engineering Laboratory of Pig and Poultry Healthy Breeding and Disease Diagnosis Technology, Xiajin New Hope Liuhe Agriculture and Animal Husbandry Co., Ltd., Dezhou, China
| | - Ran Guan
- Shandong Engineering Laboratory of Pig and Poultry Healthy Breeding and Disease Diagnosis Technology, Xiajin New Hope Liuhe Agriculture and Animal Husbandry Co., Ltd., Dezhou, China
- College of Animal Science, Xichang University, Xichang, China
| | - Xiaowen Li
- Shandong Engineering Laboratory of Pig and Poultry Healthy Breeding and Disease Diagnosis Technology, Xiajin New Hope Liuhe Agriculture and Animal Husbandry Co., Ltd., Dezhou, China
- College of Veterinary Medicine, Northwest A&F University, Xianyang, China
- China Agriculture Research System-Yangling Comprehensive Test Station, Yangling Besun Agricultural Industry Group Corporation Co., Ltd., Xianyang, China
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28
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Weng C, Huang L, Ye G. Joint deletion of multifunctional MGF505-7R and H240R genes generates a safe and effective African swine fever virus attenuated live vaccine candidate. Virol Sin 2024; 39:355-357. [PMID: 38697264 PMCID: PMC11279772 DOI: 10.1016/j.virs.2024.04.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Accepted: 04/11/2024] [Indexed: 05/04/2024] Open
Abstract
•MGF505-7R and H240R are virulence-related genes. •ASFV-ΔMGF505-7R- ΔH240R is attenuated. •The candidate vaccine is safe and protective.
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Affiliation(s)
- Changjiang Weng
- Division of Fundamental Immunology, National African Swine Fever Para-reference Laboratory, State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China; Heilongjiang Provincial Key Laboratory of Veterinary Immunology, Harbin 150069, China.
| | - Li Huang
- Division of Fundamental Immunology, National African Swine Fever Para-reference Laboratory, State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China; Heilongjiang Provincial Key Laboratory of Veterinary Immunology, Harbin 150069, China
| | - Guangqiang Ye
- Division of Fundamental Immunology, National African Swine Fever Para-reference Laboratory, State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China
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29
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Marín-Moraleda D, Muñoz-Basagoiti J, Tort-Miró A, Navas MJ, Muñoz M, Vidal E, Cobos À, Martín-Mur B, Meas S, Motuzova V, Chang CY, Gut M, Accensi F, Pina-Pedrero S, Núñez JI, Esteve-Codina A, Gavrilov B, Rodriguez F, Liu L, Argilaguet J. Elucidating the Onset of Cross-Protective Immunity after Intranasal Vaccination with the Attenuated African Swine Fever Vaccine Candidate BA71ΔCD2. Vaccines (Basel) 2024; 12:517. [PMID: 38793768 PMCID: PMC11125603 DOI: 10.3390/vaccines12050517] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Revised: 05/05/2024] [Accepted: 05/07/2024] [Indexed: 05/26/2024] Open
Abstract
African swine fever (ASF) is a deadly disease of swine currently causing a worldwide pandemic, leading to severe economic consequences for the porcine industry. The control of disease spread is hampered by the limitation of available effective vaccines. Live attenuated vaccines (LAVs) are currently the most advanced vaccine prototypes, providing strong protection against ASF. However, the significant advances achieved using LAVs must be complemented with further studies to analyze vaccine-induced immunity. Here, we characterized the onset of cross-protective immunity triggered by the LAV candidate BA71ΔCD2. Intranasally vaccinated pigs were challenged with the virulent Georgia 2007/1 strain at days 3, 7 and 12 postvaccination. Only the animals vaccinated 12 days before the challenge had effectively controlled infection progression, showing low virus loads, minor clinical signs and a lack of the unbalanced inflammatory response characteristic of severe disease. Contrarily, the animals vaccinated 3 or 7 days before the challenge just showed a minor delay in disease progression. An analysis of the humoral response and whole blood transcriptome signatures demonstrated that the control of infection was associated with the presence of virus-specific IgG and a cytotoxic response before the challenge. These results contribute to our understanding of protective immunity induced by LAV-based vaccines, encouraging their use in emergency responses in ASF-affected areas.
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Affiliation(s)
- David Marín-Moraleda
- Unitat Mixta d’Investigació IRTA-UAB en Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain; (D.M.-M.); (J.M.-B.); (J.I.N.)
- Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Programa de Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain
- WOAH Collaborating Centre for the Research and Control of Emerging and Re-Emerging Swine Diseases in Europe (IRTA-CReSA), 08193 Bellaterra, Spain
| | - Jordana Muñoz-Basagoiti
- Unitat Mixta d’Investigació IRTA-UAB en Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain; (D.M.-M.); (J.M.-B.); (J.I.N.)
- Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Programa de Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain
- WOAH Collaborating Centre for the Research and Control of Emerging and Re-Emerging Swine Diseases in Europe (IRTA-CReSA), 08193 Bellaterra, Spain
| | - Aida Tort-Miró
- Unitat Mixta d’Investigació IRTA-UAB en Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain; (D.M.-M.); (J.M.-B.); (J.I.N.)
- Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Programa de Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain
- WOAH Collaborating Centre for the Research and Control of Emerging and Re-Emerging Swine Diseases in Europe (IRTA-CReSA), 08193 Bellaterra, Spain
| | - María Jesús Navas
- Unitat Mixta d’Investigació IRTA-UAB en Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain; (D.M.-M.); (J.M.-B.); (J.I.N.)
- Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Programa de Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain
- WOAH Collaborating Centre for the Research and Control of Emerging and Re-Emerging Swine Diseases in Europe (IRTA-CReSA), 08193 Bellaterra, Spain
| | - Marta Muñoz
- Unitat Mixta d’Investigació IRTA-UAB en Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain; (D.M.-M.); (J.M.-B.); (J.I.N.)
- Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Programa de Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain
- WOAH Collaborating Centre for the Research and Control of Emerging and Re-Emerging Swine Diseases in Europe (IRTA-CReSA), 08193 Bellaterra, Spain
| | - Enric Vidal
- Unitat Mixta d’Investigació IRTA-UAB en Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain; (D.M.-M.); (J.M.-B.); (J.I.N.)
- Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Programa de Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain
- WOAH Collaborating Centre for the Research and Control of Emerging and Re-Emerging Swine Diseases in Europe (IRTA-CReSA), 08193 Bellaterra, Spain
| | - Àlex Cobos
- Unitat Mixta d’Investigació IRTA-UAB en Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain; (D.M.-M.); (J.M.-B.); (J.I.N.)
- Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Programa de Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain
- WOAH Collaborating Centre for the Research and Control of Emerging and Re-Emerging Swine Diseases in Europe (IRTA-CReSA), 08193 Bellaterra, Spain
| | - Beatriz Martín-Mur
- Centro Nacional de Análisis Genómico (CNAG), Baldiri Reixac 4, 08028 Barcelona, Spain
- Universitat de Barcelona (UB), 08034 Barcelona, Spain
| | - Sochanwattey Meas
- School of Bioresources and Technology, King Mongkut’s University of Technology Thonburi, Bangkok 10150, Thailand
| | - Veronika Motuzova
- Unitat Mixta d’Investigació IRTA-UAB en Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain; (D.M.-M.); (J.M.-B.); (J.I.N.)
- Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Programa de Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain
- WOAH Collaborating Centre for the Research and Control of Emerging and Re-Emerging Swine Diseases in Europe (IRTA-CReSA), 08193 Bellaterra, Spain
| | - Chia-Yu Chang
- Department of Veterinary Medicine, National Chung Hsing University, Taichung 402, Taiwan
| | - Marta Gut
- Centro Nacional de Análisis Genómico (CNAG), Baldiri Reixac 4, 08028 Barcelona, Spain
- Universitat de Barcelona (UB), 08034 Barcelona, Spain
| | - Francesc Accensi
- Unitat Mixta d’Investigació IRTA-UAB en Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain; (D.M.-M.); (J.M.-B.); (J.I.N.)
- Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Programa de Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain
- WOAH Collaborating Centre for the Research and Control of Emerging and Re-Emerging Swine Diseases in Europe (IRTA-CReSA), 08193 Bellaterra, Spain
| | - Sonia Pina-Pedrero
- Unitat Mixta d’Investigació IRTA-UAB en Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain; (D.M.-M.); (J.M.-B.); (J.I.N.)
- Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Programa de Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain
- WOAH Collaborating Centre for the Research and Control of Emerging and Re-Emerging Swine Diseases in Europe (IRTA-CReSA), 08193 Bellaterra, Spain
| | - José Ignacio Núñez
- Unitat Mixta d’Investigació IRTA-UAB en Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain; (D.M.-M.); (J.M.-B.); (J.I.N.)
- Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Programa de Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain
- WOAH Collaborating Centre for the Research and Control of Emerging and Re-Emerging Swine Diseases in Europe (IRTA-CReSA), 08193 Bellaterra, Spain
| | - Anna Esteve-Codina
- Centro Nacional de Análisis Genómico (CNAG), Baldiri Reixac 4, 08028 Barcelona, Spain
- Universitat de Barcelona (UB), 08034 Barcelona, Spain
| | - Boris Gavrilov
- Biologics Development, Huvepharma, 3A Nikolay Haytov Street, 1113 Sofia, Bulgaria
| | - Fernando Rodriguez
- Unitat Mixta d’Investigació IRTA-UAB en Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain; (D.M.-M.); (J.M.-B.); (J.I.N.)
- Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Programa de Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain
- WOAH Collaborating Centre for the Research and Control of Emerging and Re-Emerging Swine Diseases in Europe (IRTA-CReSA), 08193 Bellaterra, Spain
| | - Lihong Liu
- Swedish Veterinary Agency (SVA), 751 89 Uppsala, Sweden
| | - Jordi Argilaguet
- Unitat Mixta d’Investigació IRTA-UAB en Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain; (D.M.-M.); (J.M.-B.); (J.I.N.)
- Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Programa de Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain
- WOAH Collaborating Centre for the Research and Control of Emerging and Re-Emerging Swine Diseases in Europe (IRTA-CReSA), 08193 Bellaterra, Spain
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O’Donnell V, Pierce JL, Osipenko O, Xu L, Berninger A, Lakin SM, Barrette RW, Gladue DP, Faburay B. Rapid Detection and Quick Characterization of African Swine Fever Virus Using the VolTRAX Automated Library Preparation Platform. Viruses 2024; 16:731. [PMID: 38793613 PMCID: PMC11125638 DOI: 10.3390/v16050731] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Revised: 04/25/2024] [Accepted: 05/01/2024] [Indexed: 05/26/2024] Open
Abstract
African swine fever virus (ASFV) is the causative agent of a severe and highly contagious viral disease affecting domestic and wild swine. The current ASFV pandemic strain has a high mortality rate, severely impacting pig production and, for countries suffering outbreaks, preventing the export of their pig products for international trade. Early detection and diagnosis of ASFV is necessary to control new outbreaks before the disease spreads rapidly. One of the rate-limiting steps to identify ASFV by next-generation sequencing platforms is library preparation. Here, we investigated the capability of the Oxford Nanopore Technologies' VolTRAX platform for automated DNA library preparation with downstream sequencing on Nanopore sequencing platforms as a proof-of-concept study to rapidly identify the strain of ASFV. Within minutes, DNA libraries prepared using VolTRAX generated near-full genome sequences of ASFV. Thus, our data highlight the use of the VolTRAX as a platform for automated library preparation, coupled with sequencing on the MinION Mk1C for field sequencing or GridION within a laboratory setting. These results suggest a proof-of-concept study that VolTRAX is an effective tool for library preparation that can be used for the rapid and real-time detection of ASFV.
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Affiliation(s)
- Vivian O’Donnell
- Plum Island Animal Disease Center, Animal and Plant Health Inspection Service, U.S. Department of Agriculture, Foreign Animal Disease Diagnostic Laboratory, National Veterinary Services Laboratories, Orient, NY 11957, USA; (L.X.); (R.W.B.); (B.F.)
| | - Jim L. Pierce
- Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, TN 37830, USA; (J.L.P.); (A.B.)
| | - Oleg Osipenko
- National Bio- and Agro-Defense Facility, Animal and Plant Health Inspection Service, U.S. Department of Agriculture, Manhattan, KS 66502, USA; (O.O.); (S.M.L.)
| | - Lizhe Xu
- Plum Island Animal Disease Center, Animal and Plant Health Inspection Service, U.S. Department of Agriculture, Foreign Animal Disease Diagnostic Laboratory, National Veterinary Services Laboratories, Orient, NY 11957, USA; (L.X.); (R.W.B.); (B.F.)
| | - Amy Berninger
- Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, TN 37830, USA; (J.L.P.); (A.B.)
| | - Steven M. Lakin
- National Bio- and Agro-Defense Facility, Animal and Plant Health Inspection Service, U.S. Department of Agriculture, Manhattan, KS 66502, USA; (O.O.); (S.M.L.)
| | - Roger W. Barrette
- Plum Island Animal Disease Center, Animal and Plant Health Inspection Service, U.S. Department of Agriculture, Foreign Animal Disease Diagnostic Laboratory, National Veterinary Services Laboratories, Orient, NY 11957, USA; (L.X.); (R.W.B.); (B.F.)
| | - Douglas P. Gladue
- National Bio- and Agro-Defense Facility, Agricultural Research Service, U.S. Department of Agriculture, Manhattan, KS 66502, USA;
- Plum Island Animal Disease Center, Agricultural Research Service, U.S. Department of Agriculture, Orient, NY 11957, USA
| | - Bonto Faburay
- Plum Island Animal Disease Center, Animal and Plant Health Inspection Service, U.S. Department of Agriculture, Foreign Animal Disease Diagnostic Laboratory, National Veterinary Services Laboratories, Orient, NY 11957, USA; (L.X.); (R.W.B.); (B.F.)
- National Bio- and Agro-Defense Facility, Animal and Plant Health Inspection Service, U.S. Department of Agriculture, Manhattan, KS 66502, USA; (O.O.); (S.M.L.)
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Le VP, Nguyen VT, Le TB, Mai NTA, Nguyen VD, Than TT, Lai TNH, Cho KH, Hong SK, Kim YH, Bui TAD, Nguyen TL, Song D, Ambagala A. Detection of Recombinant African Swine Fever Virus Strains of p72 Genotypes I and II in Domestic Pigs, Vietnam, 2023. Emerg Infect Dis 2024; 30:991-994. [PMID: 38666642 PMCID: PMC11060461 DOI: 10.3201/eid3005.231775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/02/2024] Open
Abstract
African swine fever virus (ASFV) genotype II is endemic to Vietnam. We detected recombinant ASFV genotypes I and II (rASFV I/II) strains in domestic pigs from 6 northern provinces in Vietnam. The introduction of rASFV I/II strains could complicate ongoing ASFV control measures in the region.
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Wang Z, Wang Y, Zhang Y, Qin G, Sun W, Wang A, Wang Y, Zhang G, Zhao J. On-site detection and differentiation of African swine fever virus variants using an orthogonal CRISPR-Cas12b/Cas13a-based assay. iScience 2024; 27:109050. [PMID: 38571763 PMCID: PMC10987800 DOI: 10.1016/j.isci.2024.109050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Revised: 12/14/2023] [Accepted: 01/23/2024] [Indexed: 04/05/2024] Open
Abstract
The African swine fever virus (ASFV) and its variants have induced substantial economic losses in China, prompting a critical need for efficient detection methods. Several PCR-based methods have been developed to discriminate between wild-type ASFV and gene-deleted variants. However, the requirement for sophisticated equipment and skilled operators limits their use in field settings. Here, we developed a CRISPR-Cas12b/Cas13a-based detection assay that can identify ASFV variants with minimal equipment requirements and a short turnaround time. The assay utilizes the distinct DNA/RNA collateral cleavage preferences of Cas12b/Cas13a to detect two amplified targets from multiplex recombinase polymerase amplification (RPA) in a single tube, and the results can be visualized through fluorescent or lateral-flow readouts. When tested with clinical samples in field settings, our assay successfully detected all ASFV-positive samples in less than 60 min. This assay provides a rapid on-site surveillance tool for detecting ASFV and its emerging variants.
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Affiliation(s)
- Zhe Wang
- School of Life Sciences, Zhengzhou University, Zhengzhou 450001, China
- Longhu Laboratory, Zhengzhou 450046, China
- Henan Key Laboratory of Immunobiology, Zhengzhou 450001, China
| | - Yu Wang
- Key Laboratory of Organ Regeneration and Reconstruction, Institute of Zoology, Chinese Academy of Science, Beijing 100101, China
- Savaid Medical School, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ying Zhang
- Key Laboratory of Organ Regeneration and Reconstruction, Institute of Zoology, Chinese Academy of Science, Beijing 100101, China
- Beijing Institute for Stem Cell and Regenerative Medicine, Beijing 100101, China
- Institute for Stem Cell and Regeneration, Chinese Academy of Sciences, Beijing 100101, China
| | - Guosong Qin
- Key Laboratory of Organ Regeneration and Reconstruction, Institute of Zoology, Chinese Academy of Science, Beijing 100101, China
- Beijing Institute for Stem Cell and Regenerative Medicine, Beijing 100101, China
- Institute for Stem Cell and Regeneration, Chinese Academy of Sciences, Beijing 100101, China
| | - Wenbo Sun
- Shandong Key Laboratory of Animal Disease Control and Breeding, Institute of Animal Science and Veterinary Medicine, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Aiping Wang
- School of Life Sciences, Zhengzhou University, Zhengzhou 450001, China
- Longhu Laboratory, Zhengzhou 450046, China
- Henan Key Laboratory of Immunobiology, Zhengzhou 450001, China
| | - Yanfang Wang
- State Key Laboratory of Animal Nutrition, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Gaiping Zhang
- School of Life Sciences, Zhengzhou University, Zhengzhou 450001, China
- Longhu Laboratory, Zhengzhou 450046, China
- Henan Key Laboratory of Immunobiology, Zhengzhou 450001, China
- School of Advanced Agricultural Sciences, Peking University, Beijing 100871, China
| | - Jianguo Zhao
- Key Laboratory of Organ Regeneration and Reconstruction, Institute of Zoology, Chinese Academy of Science, Beijing 100101, China
- Savaid Medical School, University of Chinese Academy of Sciences, Beijing 100049, China
- Beijing Institute for Stem Cell and Regenerative Medicine, Beijing 100101, China
- Institute for Stem Cell and Regeneration, Chinese Academy of Sciences, Beijing 100101, China
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Luan H, Wang S, Ju L, Liu T, Shi H, Ge S, Jiang S, Wu J, Peng J. KP177R-based visual assay integrating RPA and CRISPR/ Cas12a for the detection of African swine fever virus. Front Immunol 2024; 15:1358960. [PMID: 38655256 PMCID: PMC11035814 DOI: 10.3389/fimmu.2024.1358960] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2023] [Accepted: 03/21/2024] [Indexed: 04/26/2024] Open
Abstract
Introduction Early detection of the virus in the environment or in infected pigs is a critical step to stop African swine fever virus (ASFV) transmission. The p22 protein encoded by ASFV KP177R gene has been shown to have no effect on viral replication and virulence and can serve as a molecular marker for distinguishing field virus strains from future candidate KP177R deletion vaccine strains. Methods This study established an ASFV detection assay specific for the highly conserved ASFV KP177R gene based on recombinase polymerase amplification (RPA) and the CRISPR/Cas12 reaction system. The KP177R gene served as the initial template for the RPA reaction to generate amplicons, which were recognized by guide RNA to activate the trans-cleavage activity of Cas12a protein, thereby leading to non-specific cleavage of single-stranded DNA as well as corresponding color reaction. The viral detection in this assay could be determined by visualizing the results of fluorescence or lateral flow dipstick (LFD) biotin blotting for color development, and was respectively referred to as fluorescein-labeled RPA-CRISPR/Cas12a and biotin-labeled LFD RPA-CRISPR/Cas12a. The clinical samples were simultaneously subjected to the aforementioned assay, while real-time quantitative PCR (RT-qPCR) was employed as a control for determining the diagnostic concordance rate between both assays. Results The results showed that fluorescein- and biotin-labeled LFD KP177R RPA-CRISPR/Cas12a assays specifically detected ASFV, did not cross-react with other swine pathogens including PCV2, PEDV, PDCoV, and PRV. The detection assay established in this study had a limit of detection (LOD) of 6.8 copies/μL, and both assays were completed in 30 min. The KP177R RPA-CRISPR/Cas12a assay demonstrated a diagnostic coincidence rate of 100% and a kappa value of 1.000 (p < 0.001), with six out of ten clinical samples testing positive for ASFV using both KP177R RPA-CRISPR/Cas12a and RT-qPCR, while four samples tested negative in both assays. Discussion The rapid, sensitive and visual detection assay for ASFV developed in this study is suitable for field application in swine farms, particularly for future differentiation of field virus strains from candidate KP177R gene-deleted ASFV vaccines, which may be a valuable screening tool for ASF eradication.
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Affiliation(s)
- Haorui Luan
- College of Veterinary Medicine, Shandong Agricultural University, Taian, China
- East China Scientific Experimental Station of Animal Pathogen Biology of Ministry of Agriculture and Rural Affairs, Shandong Provincial Key Laboratory of Animal Biotechnology and Disease Control and Prevention, Taian, China
| | - Shujuan Wang
- China Animal Health and Epidemiology Center, Qingdao, China
| | - Lin Ju
- College of Veterinary Medicine, Shandong Agricultural University, Taian, China
- East China Scientific Experimental Station of Animal Pathogen Biology of Ministry of Agriculture and Rural Affairs, Shandong Provincial Key Laboratory of Animal Biotechnology and Disease Control and Prevention, Taian, China
| | - Tong Liu
- College of Veterinary Medicine, Shandong Agricultural University, Taian, China
- East China Scientific Experimental Station of Animal Pathogen Biology of Ministry of Agriculture and Rural Affairs, Shandong Provincial Key Laboratory of Animal Biotechnology and Disease Control and Prevention, Taian, China
| | - Haoyue Shi
- College of Veterinary Medicine, Shandong Agricultural University, Taian, China
- East China Scientific Experimental Station of Animal Pathogen Biology of Ministry of Agriculture and Rural Affairs, Shandong Provincial Key Laboratory of Animal Biotechnology and Disease Control and Prevention, Taian, China
| | - Shengqiang Ge
- China Animal Health and Epidemiology Center, Qingdao, China
| | - Shijin Jiang
- College of Veterinary Medicine, Shandong Agricultural University, Taian, China
- East China Scientific Experimental Station of Animal Pathogen Biology of Ministry of Agriculture and Rural Affairs, Shandong Provincial Key Laboratory of Animal Biotechnology and Disease Control and Prevention, Taian, China
| | - Jiaqiang Wu
- Institute of Animal Science and Veterinary Medicine, Shandong Academy of Agricultural Sciences, Jinan, China
| | - Jun Peng
- College of Veterinary Medicine, Shandong Agricultural University, Taian, China
- East China Scientific Experimental Station of Animal Pathogen Biology of Ministry of Agriculture and Rural Affairs, Shandong Provincial Key Laboratory of Animal Biotechnology and Disease Control and Prevention, Taian, China
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Ambagala A, Goonewardene K, Kanoa IE, Than TT, Nguyen VT, Lai TNH, Nguyen TL, Erdelyan CNG, Robert E, Tailor N, Onyilagha C, Lamboo L, Handel K, Nebroski M, Vernygora O, Lung O, Le VP. Characterization of an African Swine Fever Virus Field Isolate from Vietnam with Deletions in the Left Variable Multigene Family Region. Viruses 2024; 16:571. [PMID: 38675912 PMCID: PMC11054794 DOI: 10.3390/v16040571] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Revised: 03/29/2024] [Accepted: 03/30/2024] [Indexed: 04/28/2024] Open
Abstract
In this paper, we report the characterization of a genetically modified live-attenuated African swine fever virus (ASFV) field strain isolated from Vietnam. The isolate, ASFV-GUS-Vietnam, belongs to p72 genotype II, has six multi-gene family (MGF) genes deleted, and an Escherichia coli GusA gene (GUS) inserted. When six 6-8-week-old pigs were inoculated with ASFV-GUS-Vietnam oro-nasally (2 × 105 TCID50/pig), they developed viremia, mild fever, lethargy, and inappetence, and shed the virus in their oral and nasal secretions and feces. One of the pigs developed severe clinical signs and was euthanized 12 days post-infection, while the remaining five pigs recovered. When ASFV-GUS-Vietnam was inoculated intramuscularly (2 × 103 TCID50/pig) into four 6-8 weeks old pigs, they also developed viremia, mild fever, lethargy, inappetence, and shed the virus in their oral and nasal secretions and feces. Two contact pigs housed together with the four intramuscularly inoculated pigs, started to develop fever, viremia, loss of appetite, and lethargy 12 days post-contact, confirming horizontal transmission of ASFV-GUS-Vietnam. One of the contact pigs died of ASF on day 23 post-contact, while the other one recovered. The pigs that survived the exposure to ASFV-GUS-Vietnam via the mucosal or parenteral route were fully protected against the highly virulent ASFV Georgia 2007/1 challenge. This study showed that ASFV-GUS-Vietnam field isolate is able to induce complete protection in the majority of the pigs against highly virulent homologous ASFV challenge, but has the potential for horizontal transmission, and can be fatal in some animals. This study highlights the need for proper monitoring and surveillance when ASFV live-attenuated virus-based vaccines are used in the field for ASF control in endemic countries.
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Affiliation(s)
- Aruna Ambagala
- National Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada; (K.G.); (I.E.K.); (C.N.G.E.); (E.R.); (N.T.); (C.O.); (L.L.); (K.H.); (M.N.); (O.V.); (O.L.)
- Department of Medical Microbiology and Infectious Diseases, Max Rady College of Medicine, University of Manitoba, Winnipeg, MB R3E 0J9, Canada
- Comparative Biology and Experimental Medicine, Faculty of Veterinary Medicine, University of Calgary, Calgary, AB T2N 1N4, Canada
| | - Kalhari Goonewardene
- National Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada; (K.G.); (I.E.K.); (C.N.G.E.); (E.R.); (N.T.); (C.O.); (L.L.); (K.H.); (M.N.); (O.V.); (O.L.)
| | - Ian El Kanoa
- National Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada; (K.G.); (I.E.K.); (C.N.G.E.); (E.R.); (N.T.); (C.O.); (L.L.); (K.H.); (M.N.); (O.V.); (O.L.)
| | - Thi Tam Than
- College of Veterinary Medicine, Vietnam National University of Agriculture, Hanoi 100000, Vietnam; (T.T.T.); (T.N.H.L.); (T.L.N.)
| | - Van Tam Nguyen
- Institute of Veterinary Science and Technology, Hanoi 100000, Vietnam;
| | - Thi Ngoc Ha Lai
- College of Veterinary Medicine, Vietnam National University of Agriculture, Hanoi 100000, Vietnam; (T.T.T.); (T.N.H.L.); (T.L.N.)
| | - Thi Lan Nguyen
- College of Veterinary Medicine, Vietnam National University of Agriculture, Hanoi 100000, Vietnam; (T.T.T.); (T.N.H.L.); (T.L.N.)
| | - Cassidy N. G. Erdelyan
- National Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada; (K.G.); (I.E.K.); (C.N.G.E.); (E.R.); (N.T.); (C.O.); (L.L.); (K.H.); (M.N.); (O.V.); (O.L.)
| | - Erin Robert
- National Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada; (K.G.); (I.E.K.); (C.N.G.E.); (E.R.); (N.T.); (C.O.); (L.L.); (K.H.); (M.N.); (O.V.); (O.L.)
- Department of Medical Microbiology and Infectious Diseases, Max Rady College of Medicine, University of Manitoba, Winnipeg, MB R3E 0J9, Canada
| | - Nikesh Tailor
- National Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada; (K.G.); (I.E.K.); (C.N.G.E.); (E.R.); (N.T.); (C.O.); (L.L.); (K.H.); (M.N.); (O.V.); (O.L.)
| | - Chukwunonso Onyilagha
- National Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada; (K.G.); (I.E.K.); (C.N.G.E.); (E.R.); (N.T.); (C.O.); (L.L.); (K.H.); (M.N.); (O.V.); (O.L.)
| | - Lindsey Lamboo
- National Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada; (K.G.); (I.E.K.); (C.N.G.E.); (E.R.); (N.T.); (C.O.); (L.L.); (K.H.); (M.N.); (O.V.); (O.L.)
| | - Katherine Handel
- National Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada; (K.G.); (I.E.K.); (C.N.G.E.); (E.R.); (N.T.); (C.O.); (L.L.); (K.H.); (M.N.); (O.V.); (O.L.)
| | - Michelle Nebroski
- National Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada; (K.G.); (I.E.K.); (C.N.G.E.); (E.R.); (N.T.); (C.O.); (L.L.); (K.H.); (M.N.); (O.V.); (O.L.)
| | - Oksana Vernygora
- National Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada; (K.G.); (I.E.K.); (C.N.G.E.); (E.R.); (N.T.); (C.O.); (L.L.); (K.H.); (M.N.); (O.V.); (O.L.)
| | - Oliver Lung
- National Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada; (K.G.); (I.E.K.); (C.N.G.E.); (E.R.); (N.T.); (C.O.); (L.L.); (K.H.); (M.N.); (O.V.); (O.L.)
| | - Van Phan Le
- College of Veterinary Medicine, Vietnam National University of Agriculture, Hanoi 100000, Vietnam; (T.T.T.); (T.N.H.L.); (T.L.N.)
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Shi K, Qian X, Shi Y, Wei H, Pan Y, Long F, Zhou Q, Mo S, Hu L, Li Z. A triplex crystal digital PCR for the detection of genotypes I and II African swine fever virus. Front Vet Sci 2024; 11:1351596. [PMID: 38628942 PMCID: PMC11019002 DOI: 10.3389/fvets.2024.1351596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Accepted: 03/19/2024] [Indexed: 04/19/2024] Open
Abstract
African swine fever (ASF) is a highly contagious and lethal viral disease that causes severe hemorrhagic fever in pigs. It keeps spreading around the world, posing a severe socioeconomic risk and endangering biodiversity and domestic food security. ASF first outbroke in China in 2018, and has spread to most provinces nationwide. Genotypes I and II ASF virus (ASFV) as the etiological pathogens have been found in China. In this study, three pairs of specific primers and probes targeting the ASFV B646L gene, F1055L gene, and E183L gene were designed to detect universal, genotype I, and genotype II strains, respectively. A triplex crystal digital PCR (cdPCR) was established on the basis of optimizing various reaction conditions. The assay demonstrated remarkably sensitive with low limits of detection (LODs) of 5.120, 4.218, 4.588 copies/reaction for B646L, F1055L, and E183L gene, respectively; excellent repeatability with 1.24-2.01% intra-assay coefficients of variation (CVs) and 1.32-2.53% inter-assay CVs; good specificity for only detection of genotypes I and II ASFV, without cross-reactivity with PCV2, PRV, SIV, PRRSV, PEDV, FMDV, and CSFV. The triplex cdPCR was used to test 1,275 clinical samples from Guangxi province of China, and the positivity rates were 5.05, 3.22, and 1.02% for genotype I, genotype II, and co-infection of genotypes I and II, respectively. These 1,275 clinical samples were also detected using a reported reference triplex real-time quantitative PCR (qPCR), and the agreements of detection results between these two methods were more than 98.98%. In conclusion, the developed triplex cdPCR could be used as a rapid, sensitive, and accurate method to detect and differentiate genotypes I and II strains of ASFV.
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Affiliation(s)
- Kaichuang Shi
- School of Basic Medical Sciences, Youjiang Medical University for Nationalities, Baise, China
- College of Animal Science and Technology, Guangxi University, Nanning, China
- Guangxi Center for Animal Disease Control and Prevention, Nanning, China
| | - Xinxiu Qian
- College of Animal Science and Technology, Guangxi University, Nanning, China
| | - Yuwen Shi
- College of Animal Science and Technology, Guangxi University, Nanning, China
| | - Haina Wei
- Guangxi Center for Animal Disease Control and Prevention, Nanning, China
| | - Yi Pan
- School of Basic Medical Sciences, Youjiang Medical University for Nationalities, Baise, China
| | - Feng Long
- Guangxi Center for Animal Disease Control and Prevention, Nanning, China
| | - Qingan Zhou
- Guangxi Center for Animal Disease Control and Prevention, Nanning, China
| | - Shenglan Mo
- Guangxi Center for Animal Disease Control and Prevention, Nanning, China
| | - Liping Hu
- Guangxi Center for Animal Disease Control and Prevention, Nanning, China
| | - Zongqiang Li
- College of Animal Science and Technology, Guangxi University, Nanning, China
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Cho KH, Hong SK, Kim DY, Sohn HJ, Yoo DS, Kang HE, Kim YH. Disease Course of Korean African Swine Fever Virus in Domestic Pigs Exposed Intraorally, Intranasally, Intramuscularly, and by Direct Contact with Infected Pigs. Viruses 2024; 16:433. [PMID: 38543798 PMCID: PMC10974542 DOI: 10.3390/v16030433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Revised: 03/06/2024] [Accepted: 03/10/2024] [Indexed: 05/23/2024] Open
Abstract
African swine fever (ASF) is a fatal contagious disease affecting swine. The first Korean ASF virus (ASFV) isolate (Korea/Pig/Paju1/2019) was used to compare the disease course of ASFV in pigs inoculated via the four routes. In the challenge experiment, domestic pigs were infected via the intraoral (IO) and intranasal (IN) routes with a 106 50% hemadsorbing dose (HAD50) and an intramuscular (IM) injection of 103 HAD50. In the direct contact (DC) group, five naïve pigs were brought into direct contact with two IM-ASFV-infected pigs. IO-, IN-, and IM-inoculated pigs showed similar disease courses, whereas DC pigs had comparable ASF syndrome after a 7-day latent period. The disease course in the DC route, one of the most common routes of infection, was not significantly different from that in the IO and IN routes. IM and DC groups differed in terms of the severity of fever and hemorrhagic lesions in the lymph nodes and spleen, indicating that the IM route, suitable for early vaccine development trials, is not appropriate for studying the ASFV infection mechanism, including early stage of infection, and IO and IN challenges with a designated dose can be alternatives in trials for assessing ASFV pathogenicity and vaccine efficacy investigations.
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Affiliation(s)
- Ki-Hyun Cho
- Foreign Animal Disease Division, Animal and Plant Quarantine Agency, 177 Hyeoksin 8-ro, Gimcheon 39660, Republic of Korea; (K.-H.C.); (S.-K.H.); (D.-Y.K.); (H.-J.S.); (H.-E.K.)
| | - Seong-Keun Hong
- Foreign Animal Disease Division, Animal and Plant Quarantine Agency, 177 Hyeoksin 8-ro, Gimcheon 39660, Republic of Korea; (K.-H.C.); (S.-K.H.); (D.-Y.K.); (H.-J.S.); (H.-E.K.)
| | - Da-Young Kim
- Foreign Animal Disease Division, Animal and Plant Quarantine Agency, 177 Hyeoksin 8-ro, Gimcheon 39660, Republic of Korea; (K.-H.C.); (S.-K.H.); (D.-Y.K.); (H.-J.S.); (H.-E.K.)
| | - Hyun-Joo Sohn
- Foreign Animal Disease Division, Animal and Plant Quarantine Agency, 177 Hyeoksin 8-ro, Gimcheon 39660, Republic of Korea; (K.-H.C.); (S.-K.H.); (D.-Y.K.); (H.-J.S.); (H.-E.K.)
| | - Dae-Sung Yoo
- College of Veterinary Medicine, Chonnam National University, Gwangju 61168, Republic of Korea;
| | - Hae-Eun Kang
- Foreign Animal Disease Division, Animal and Plant Quarantine Agency, 177 Hyeoksin 8-ro, Gimcheon 39660, Republic of Korea; (K.-H.C.); (S.-K.H.); (D.-Y.K.); (H.-J.S.); (H.-E.K.)
| | - Yeon-Hee Kim
- Foreign Animal Disease Division, Animal and Plant Quarantine Agency, 177 Hyeoksin 8-ro, Gimcheon 39660, Republic of Korea; (K.-H.C.); (S.-K.H.); (D.-Y.K.); (H.-J.S.); (H.-E.K.)
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Portugaliza HP. Seroprevalence of African swine fever in pigs for slaughter in Leyte, Philippines. J Adv Vet Anim Res 2024; 11:65-70. [PMID: 38680799 PMCID: PMC11055580 DOI: 10.5455/javar.2024.k748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Revised: 12/15/2023] [Accepted: 02/17/2024] [Indexed: 05/01/2024] Open
Abstract
Objective This study aims to determine the seroprevalence of African swine fever (ASF) in pigs for slaughter in Leyte, Philippines. It underpins the concept that recovered and infected pigs from ASF are likely sent for slaughter to avoid perceived economic losses. Materials and Methods A cross-sectional study was conducted from March to June 2023 in eight abattoirs, each representing both a city and a municipality in Leyte province. A total of 218 blood samples from 78 farms were examined for ASF virus (ASFV) (VP72) antibodies using a blocking enzyme-linked immunosorbent assay (ELISA) method. Descriptive and seroprevalence analyses were performed. Results ASF antibodies were detected in pigs for slaughter from abattoirs in Baybay and Ormoc cities, showing a seroprevalence of 3.57% (1/28 pigs) and 2.27% (1/44 pigs), respectively. An apparent absence of ASF antibodies was observed among pigs for slaughter in Isabel, Villaba, Abuyog, Kananga, Dulag, and Macarthur. The farm-level seroprevalence was 2.56% (95% CI: 0.71%-8.88%), while the pig-level seroprevalence was 0.91% (95% CI: 0.25%-3.27%). Conclusion Detecting ASF antibodies among pigs for slaughter implies exposure to the virus from the farm of origin. This means that, on some farms, ASF remains unreported or undiagnosed. Active surveillance is needed for early case detection and rapid response to control the spread of ASF in the country.
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Affiliation(s)
- Harvie P. Portugaliza
- Department of Veterinary Clinical Sciences, College of Veterinary Medicine, Visayas State University, Visca, Baybay City, Philippines
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Shi C, Wang Q, Liu Y, Wang S, Zhang Y, Liu C, Hu Y, Zheng D, Sun C, Song F, Yu X, Zhao Y, Bao J, Wang Z. Generation of High-Quality African Swine Fever Virus Complete Genome from Field Samples by Next-Generation Sequencing. Viruses 2024; 16:312. [PMID: 38400087 PMCID: PMC10891787 DOI: 10.3390/v16020312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2023] [Revised: 02/12/2024] [Accepted: 02/12/2024] [Indexed: 02/25/2024] Open
Abstract
African swine fever (ASF) is a lethal contagious viral disease of domestic pigs and wild boars caused by the African swine fever virus (ASFV). The pandemic spread of ASF has caused severe effects on the global pig industry. Whole-genome sequencing provides crucial information for virus strain characterization, epidemiology analysis and vaccine development. Here, we evaluated the performance of next-generation sequencing (NGS) in generating ASFV genome sequences from clinical samples. Thirty-four ASFV-positive field samples including spleen, lymph node, lung, liver and blood with a range of Ct values from 14.73 to 25.95 were sequenced. For different tissue samples collected from the same sick pigs, the proportion of ASFV reads obtained from the spleen samples was 3.69-9.86 times higher than other tissues. For the high-viral-load spleen samples (Ct < 20), a minimum of a 99.8% breadth of ≥10× coverage was revealed for all the samples. For the spleen samples with Ct ≥ 20, 6/12 samples had a minimum of a 99.8% breadth of ≥10× coverage. A high average depth of sequencing coverage was also achieved from the blood samples. According to our results, high-quality ASFV whole-genome sequences could be obtained from the spleen or blood samples with Ct < 20. The high-quality ASFV genome sequence generated in this study was further used for the high-resolution phylogenetic analysis of the ASFV genomes in the early stage of the ASF epidemic in China. Our study demonstrates that NGS may act as a useful tool for efficient ASFV genome characterization, providing valuable information for disease control.
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Affiliation(s)
- Chuan Shi
- China Animal Health and Epidemiology Center, Qingdao 266032, China (Y.L.); (C.L.); (D.Z.); (C.S.)
- BGI-Qingdao, BGI-Shenzhen, Qingdao 266555, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing 518083, China
| | - Qinghua Wang
- China Animal Health and Epidemiology Center, Qingdao 266032, China (Y.L.); (C.L.); (D.Z.); (C.S.)
| | - Yutian Liu
- China Animal Health and Epidemiology Center, Qingdao 266032, China (Y.L.); (C.L.); (D.Z.); (C.S.)
| | - Shujuan Wang
- China Animal Health and Epidemiology Center, Qingdao 266032, China (Y.L.); (C.L.); (D.Z.); (C.S.)
| | - Yongqiang Zhang
- China Animal Health and Epidemiology Center, Qingdao 266032, China (Y.L.); (C.L.); (D.Z.); (C.S.)
| | - Chunju Liu
- China Animal Health and Epidemiology Center, Qingdao 266032, China (Y.L.); (C.L.); (D.Z.); (C.S.)
| | - Yongxin Hu
- China Animal Health and Epidemiology Center, Qingdao 266032, China (Y.L.); (C.L.); (D.Z.); (C.S.)
| | - Dongxia Zheng
- China Animal Health and Epidemiology Center, Qingdao 266032, China (Y.L.); (C.L.); (D.Z.); (C.S.)
| | - Chengyou Sun
- China Animal Health and Epidemiology Center, Qingdao 266032, China (Y.L.); (C.L.); (D.Z.); (C.S.)
| | - Fangfang Song
- China Animal Health and Epidemiology Center, Qingdao 266032, China (Y.L.); (C.L.); (D.Z.); (C.S.)
| | - Xiaojing Yu
- China Animal Health and Epidemiology Center, Qingdao 266032, China (Y.L.); (C.L.); (D.Z.); (C.S.)
| | - Yunling Zhao
- China Animal Health and Epidemiology Center, Qingdao 266032, China (Y.L.); (C.L.); (D.Z.); (C.S.)
| | - Jingyue Bao
- China Animal Health and Epidemiology Center, Qingdao 266032, China (Y.L.); (C.L.); (D.Z.); (C.S.)
| | - Zhiliang Wang
- China Animal Health and Epidemiology Center, Qingdao 266032, China (Y.L.); (C.L.); (D.Z.); (C.S.)
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Liu HC, Liu RC, Hu MR, Yang AB, Wu RH, Chen Y, Zhang J, Bai JS, Wu SB, Chen JP, Long YF, Jiang Y, Zhou B. Development of high-concentration labeled colloidal gold immunochromatographic test strips for detecting african swine fever virus p30 protein antibodies. Heliyon 2024; 10:e25214. [PMID: 38318035 PMCID: PMC10840002 DOI: 10.1016/j.heliyon.2024.e25214] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 12/13/2023] [Accepted: 01/23/2024] [Indexed: 02/07/2024] Open
Abstract
African Swine Fever (ASF), caused by the African swine fever virus (ASFV), has inflicted significant economic losses on the pig industry in China. The key to mitigating its impact lies in accurate screening and strict biosecurity measures. In this regard, the development of colloidal gold immunochromatographic test strips (CGITS) has proven to be an effective method for detecting ASFV antibodies. These test strips are based on the ASFV p30 recombinant protein and corresponding monoclonal antibodies. The design of the test strip incorporates a high-concentration colloidal gold-labeled p30 recombinant protein as the detection sensor, utilizing Staphylococcal Protein A (SPA) as the test line (T line), and p30 monoclonal antibody as the control line (C line). The sensitivity and specificity of the test strip were evaluated after optimizing the labeling concentration, pH, and protein dosage. The research findings revealed that the optimal colloidal gold labeling concentration was 0.05 %, the optimal pH was 8.4, and the optimal protein dosage was 10 μg/mL. Under these conditions, the CGITS demonstrated a detection limit of 1:512 dilution of ASFV standard positive serum, without exhibiting cross-reactivity with antibodies against other viral pathogens. Furthermore, the test strips remained stable for up to 20 days when stored at 50 °C and 4 °C. Comparatively, the CGITS outperformed commercial ELISA kits, displaying a sensitivity of 90.9 % and a specificity of 96.2 %. Subsequently, 108 clinical sera were tested to assess its performance. The data showed that the coincidence rate between the CGITS and ELISA was 93.5 %. In conclusion, the rapid colloidal gold test strip provides an efficient and reliable screening tool for on-site clinical detection of ASF in China. Its accuracy, stability, and simplicity make it a valuable asset in combating the spread of ASF and limiting its impact on the pig industry.
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Affiliation(s)
- Huai-cheng Liu
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China
| | - Rong-chao Liu
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China
| | - Mei-rong Hu
- GuangDong Winsun Bio-Pharmaceutical Co., Ltd., Guangzhou, 511356, China
| | - Ao-bing Yang
- GuangDong Winsun Bio-Pharmaceutical Co., Ltd., Guangzhou, 511356, China
| | - Ren-hu Wu
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China
| | - Yan Chen
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China
| | - Jin Zhang
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China
| | - Ji-shan Bai
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China
| | - Sheng-bo Wu
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China
| | - Jian-peng Chen
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China
| | - Yun-feng Long
- Animal, Plant and Food Inspection Center, Nanjing Customs, Nanjing 210019, China
| | - Yan Jiang
- Animal, Plant and Food Inspection Center, Nanjing Customs, Nanjing 210019, China
| | - Bin Zhou
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China
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Dinhobl M, Spinard E, Tesler N, Birtley H, Signore A, Ambagala A, Masembe C, Borca MV, Gladue DP. Reclassification of ASFV into 7 Biotypes Using Unsupervised Machine Learning. Viruses 2023; 16:67. [PMID: 38257767 PMCID: PMC10819123 DOI: 10.3390/v16010067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2023] [Revised: 12/23/2023] [Accepted: 12/27/2023] [Indexed: 01/24/2024] Open
Abstract
In 2007, an outbreak of African swine fever (ASF), a deadly disease of domestic swine and wild boar caused by the African swine fever virus (ASFV), occurred in Georgia and has since spread globally. Historically, ASFV was classified into 25 different genotypes. However, a newly proposed system recategorized all ASFV isolates into 6 genotypes exclusively using the predicted protein sequences of p72. However, ASFV has a large genome that encodes between 150-200 genes, and classifications using a single gene are insufficient and misleading, as strains encoding an identical p72 often have significant mutations in other areas of the genome. We present here a new classification of ASFV based on comparisons performed considering the entire encoded proteome. A curated database consisting of the protein sequences predicted to be encoded by 220 reannotated ASFV genomes was analyzed for similarity between homologous protein sequences. Weights were applied to the protein identity matrices and averaged to generate a genome-genome identity matrix that was then analyzed by an unsupervised machine learning algorithm, DBSCAN, to separate the genomes into distinct clusters. We conclude that all available ASFV genomes can be classified into 7 distinct biotypes.
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Affiliation(s)
- Mark Dinhobl
- United States Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, NY 11957, USA; (M.D.); (E.S.); (N.T.); (H.B.)
- United States Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, National Bio and Agro-Defense Facility, Manhattan, KS 66502, USA
- Center of Excellence for African Swine Fever Genomics, Guilford, CT 06437, USA; (A.S.); (A.A.); (C.M.)
| | - Edward Spinard
- United States Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, NY 11957, USA; (M.D.); (E.S.); (N.T.); (H.B.)
- United States Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, National Bio and Agro-Defense Facility, Manhattan, KS 66502, USA
- Center of Excellence for African Swine Fever Genomics, Guilford, CT 06437, USA; (A.S.); (A.A.); (C.M.)
| | - Nicolas Tesler
- United States Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, NY 11957, USA; (M.D.); (E.S.); (N.T.); (H.B.)
- Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, TN 37830, USA
| | - Hillary Birtley
- United States Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, NY 11957, USA; (M.D.); (E.S.); (N.T.); (H.B.)
- Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, TN 37830, USA
| | - Anthony Signore
- Center of Excellence for African Swine Fever Genomics, Guilford, CT 06437, USA; (A.S.); (A.A.); (C.M.)
- National Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada
| | - Aruna Ambagala
- Center of Excellence for African Swine Fever Genomics, Guilford, CT 06437, USA; (A.S.); (A.A.); (C.M.)
- National Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB R3E 3M4, Canada
| | - Charles Masembe
- Center of Excellence for African Swine Fever Genomics, Guilford, CT 06437, USA; (A.S.); (A.A.); (C.M.)
- Department of Zoology, Entomology and Fisheries Sciences, School of Biosciences, College of Natural Sciences, Makerere University, Kampala P.O. Box 7062, Uganda
| | - Manuel V. Borca
- United States Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, NY 11957, USA; (M.D.); (E.S.); (N.T.); (H.B.)
- United States Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, National Bio and Agro-Defense Facility, Manhattan, KS 66502, USA
- Center of Excellence for African Swine Fever Genomics, Guilford, CT 06437, USA; (A.S.); (A.A.); (C.M.)
| | - Douglas P. Gladue
- United States Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, NY 11957, USA; (M.D.); (E.S.); (N.T.); (H.B.)
- United States Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, National Bio and Agro-Defense Facility, Manhattan, KS 66502, USA
- Center of Excellence for African Swine Fever Genomics, Guilford, CT 06437, USA; (A.S.); (A.A.); (C.M.)
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Wang L, Ganges L, Dixon LK, Bu Z, Zhao D, Truong QL, Richt JA, Jin M, Netherton CL, Benarafa C, Summerfield A, Weng C, Peng G, Reis AL, Han J, Penrith ML, Mo Y, Su Z, Vu Hoang D, Pogranichniy RM, Balaban-Oglan DA, Li Y, Wang K, Cai X, Shi J. 2023 International African Swine Fever Workshop: Critical Issues That Need to Be Addressed for ASF Control. Viruses 2023; 16:4. [PMID: 38275939 PMCID: PMC10819980 DOI: 10.3390/v16010004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Accepted: 12/13/2023] [Indexed: 01/27/2024] Open
Abstract
The 2023 International African Swine Fever Workshop (IASFW) took place in Beijing, China, on 18-20 September 2023. It was jointly organized by the U.S.-China Center for Animal Health (USCCAH) at Kansas State University (KSU) and the Chinese Veterinary Drug Association (CVDA) and sponsored by the United States Department of Agriculture Foreign Agricultural Service (USDA-FAS), Harbin Veterinary Research Institute, and Zoetis Inc. The objective of this workshop was to provide a platform for ASF researchers around the world to unite and share their knowledge and expertise on ASF control and prevention. A total of 24 outstanding ASF research scientists and experts from 10 countries attended this meeting. The workshop included presentations on current ASF research, opportunities for scientific collaboration, and discussions of lessons and experiences learned from China/Asia, Africa, and Europe. This article summarizes the meeting highlights and presents some critical issues that need to be addressed for ASF control and prevention in the future.
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Affiliation(s)
- Lihua Wang
- Center on Vaccine Evaluation and Alternatives for Antimicrobials, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA; (L.W.); (Y.L.)
| | - Llilianne Ganges
- WOAH Reference Laboratory for Classical Swine Fever, IRTA-CReSA, 08193 Barcelona, Spain;
- IRTA, Programa de Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Bellaterra, 08193 Barcelona, Spain
| | - Linda K. Dixon
- The Pirbright Institute, Ash Road, Pirbright, Woking GU24 0NF, UK; (L.K.D.); (C.L.N.); (A.L.R.)
| | - Zhigao Bu
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-Reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China; (Z.B.); (D.Z.)
| | - Dongming Zhao
- State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-Reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China; (Z.B.); (D.Z.)
| | - Quang Lam Truong
- Key Laboratory of Veterinary Biotechnology, Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Hanoi 12406, Vietnam;
| | - Juergen A. Richt
- Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA;
| | - Meilin Jin
- College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, China; (M.J.); (G.P.)
| | | | - Charaf Benarafa
- Institute of Virology and Immunology IVI, Federal Department of Home Affairs, 3147 Mittelhäusern, Switzerland; (C.B.); (A.S.)
- Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Postfach, 3012 Bern, Switzerland
- Multidisciplinary Center for Infectious Diseases, University of Bern, Postfach, 3012 Bern, Switzerland
| | - Artur Summerfield
- Institute of Virology and Immunology IVI, Federal Department of Home Affairs, 3147 Mittelhäusern, Switzerland; (C.B.); (A.S.)
- Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Postfach, 3012 Bern, Switzerland
- Multidisciplinary Center for Infectious Diseases, University of Bern, Postfach, 3012 Bern, Switzerland
| | - Changjiang Weng
- National African Swine Fever Para-Reference Laboratory, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China;
| | - Guiqing Peng
- College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, China; (M.J.); (G.P.)
| | - Ana L. Reis
- The Pirbright Institute, Ash Road, Pirbright, Woking GU24 0NF, UK; (L.K.D.); (C.L.N.); (A.L.R.)
| | - Jun Han
- College of Veterinary Medicine, China Agricultural University, Beijing 100107, China;
| | - Mary-Louise Penrith
- Department of Veterinary Tropical Diseases, University of Pretoria, Hatfield 0028, South Africa;
| | - Yupeng Mo
- Dekang Agriculture and Animal Husbandry Group, Chengdu 610225, China;
| | | | - Dang Vu Hoang
- National Institute of Veterinary Research, Hanoi 100000, Vietnam;
| | - Roman M. Pogranichniy
- Veterinary Diagnostic Laboratory, Department of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA;
| | - David-Adrian Balaban-Oglan
- Romanian Association of Swine Veterinarians, 013821 Bucharest, Romania;
- Faculty of Veterinary Medicine, University of Agronomic Science and Veterinary Medicine of Bucharest, 011464 Bucharest, Romania
| | - Yuzhen Li
- Center on Vaccine Evaluation and Alternatives for Antimicrobials, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA; (L.W.); (Y.L.)
| | - Kewen Wang
- Swine Unit, Zoetis China, Beijing 102208, China;
| | - Xuepeng Cai
- Chinese Veterinary Drug Association, Beijing 100081, China
| | - Jishu Shi
- Center on Vaccine Evaluation and Alternatives for Antimicrobials, College of Veterinary Medicine, Kansas State University, Manhattan, KS 66506, USA; (L.W.); (Y.L.)
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Petrini S, Righi C, Mészáros I, D’Errico F, Tamás V, Pela M, Olasz F, Gallardo C, Fernandez-Pinero J, Göltl E, Magyar T, Feliziani F, Zádori Z. The Production of Recombinant African Swine Fever Virus Lv17/WB/Rie1 Strains and Their In Vitro and In Vivo Characterizations. Vaccines (Basel) 2023; 11:1860. [PMID: 38140263 PMCID: PMC10748256 DOI: 10.3390/vaccines11121860] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 12/08/2023] [Accepted: 12/12/2023] [Indexed: 12/24/2023] Open
Abstract
Lv17/WB/Rie1-Δ24 was produced via illegitimate recombination mediated by low-dilution serial passage in the Cos7 cell line and isolated on PAM cell culture. The virus contains a huge ~26.4 Kb deletion in the left end of its genome. Lv17/WB/Rie1-ΔCD-ΔGL was generated via homologous recombination, crossing two ASFV strains (Lv17/WB/Rie1-ΔCD and Lv17/WB/Rie1-ΔGL containing eGFP and mCherry markers) during PAM co-infection. The presence of unique parental markers in the Lv17/WB/Rie1-ΔCD-ΔGL genome indicates at least two recombination events during the crossing, suggesting that homologous recombination is a relatively frequent event in the ASFV genome during replication in PAM. Pigs infected with Lv17/WB/Rie1-Δ24 and Lv17/WB/Rie1/ΔCD-ΔGL strains have shown mild clinical signs despite that ASFV could not be detected in their sera until a challenge infection with the Armenia/07 ASFV strain. The two viruses were not able to induce protective immunity in pigs against a virulent Armenia/07 challenge.
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Affiliation(s)
- Stefano Petrini
- National Reference Centre for Pestiviruses and Asfivirus, Istituto Zooprofilattico Sperimentale Umbria-Marche “Togo Rosati”, Via Gaetano Salvemini, 1, 06126 Perugia, Italy; (S.P.); (C.R.); (F.D.); (M.P.)
| | - Cecilia Righi
- National Reference Centre for Pestiviruses and Asfivirus, Istituto Zooprofilattico Sperimentale Umbria-Marche “Togo Rosati”, Via Gaetano Salvemini, 1, 06126 Perugia, Italy; (S.P.); (C.R.); (F.D.); (M.P.)
| | - István Mészáros
- HUN-REN Veterinary Medical Research Institute (VMRI), Hungária krt. 21, 1143 Budapest, Hungary; (I.M.); (V.T.); (F.O.); (E.G.); (T.M.)
| | - Federica D’Errico
- National Reference Centre for Pestiviruses and Asfivirus, Istituto Zooprofilattico Sperimentale Umbria-Marche “Togo Rosati”, Via Gaetano Salvemini, 1, 06126 Perugia, Italy; (S.P.); (C.R.); (F.D.); (M.P.)
| | - Vivien Tamás
- HUN-REN Veterinary Medical Research Institute (VMRI), Hungária krt. 21, 1143 Budapest, Hungary; (I.M.); (V.T.); (F.O.); (E.G.); (T.M.)
| | - Michela Pela
- National Reference Centre for Pestiviruses and Asfivirus, Istituto Zooprofilattico Sperimentale Umbria-Marche “Togo Rosati”, Via Gaetano Salvemini, 1, 06126 Perugia, Italy; (S.P.); (C.R.); (F.D.); (M.P.)
| | - Ferenc Olasz
- HUN-REN Veterinary Medical Research Institute (VMRI), Hungária krt. 21, 1143 Budapest, Hungary; (I.M.); (V.T.); (F.O.); (E.G.); (T.M.)
| | - Carmina Gallardo
- European Union Reference Laboratory for ASF (EURL-ASF), Centro de Investigación en Sanidad Animal (CISA-INIA, CSIC), Valdeolmos, 28130 Madrid, Spain; (C.G.)
| | - Jovita Fernandez-Pinero
- European Union Reference Laboratory for ASF (EURL-ASF), Centro de Investigación en Sanidad Animal (CISA-INIA, CSIC), Valdeolmos, 28130 Madrid, Spain; (C.G.)
| | - Eszter Göltl
- HUN-REN Veterinary Medical Research Institute (VMRI), Hungária krt. 21, 1143 Budapest, Hungary; (I.M.); (V.T.); (F.O.); (E.G.); (T.M.)
| | - Tibor Magyar
- HUN-REN Veterinary Medical Research Institute (VMRI), Hungária krt. 21, 1143 Budapest, Hungary; (I.M.); (V.T.); (F.O.); (E.G.); (T.M.)
| | - Francesco Feliziani
- National Reference Centre for Pestiviruses and Asfivirus, Istituto Zooprofilattico Sperimentale Umbria-Marche “Togo Rosati”, Via Gaetano Salvemini, 1, 06126 Perugia, Italy; (S.P.); (C.R.); (F.D.); (M.P.)
| | - Zoltán Zádori
- HUN-REN Veterinary Medical Research Institute (VMRI), Hungária krt. 21, 1143 Budapest, Hungary; (I.M.); (V.T.); (F.O.); (E.G.); (T.M.)
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Hu Z, Tian X, Lai R, Wang X, Li X. Current detection methods of African swine fever virus. Front Vet Sci 2023; 10:1289676. [PMID: 38144466 PMCID: PMC10739333 DOI: 10.3389/fvets.2023.1289676] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Accepted: 11/24/2023] [Indexed: 12/26/2023] Open
Abstract
African swine fever (ASF), caused by the African swine fever virus (ASFV), is a highly contagious and notifiable animal disease in domestic pigs and wild boars, as designated by the World Organization for Animal Health (WOAH). The effective diagnosis of ASF holds great importance in promptly controlling its spread due to its increasing prevalence and the continuous emergence of variant strains. This paper offers a comprehensive review of the most common and up-to-date methods established for various genes/proteins associated with ASFV. The discussed methods primarily focus on the detection of viral genomes or particles, as well as the detection of ASFV associated antibodies. It is anticipated that this paper will serve as a reference for choosing appropriate diagnostic methods in diverse application scenarios, while also provide direction for the development of innovative technologies in the future.
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Affiliation(s)
- Zhiqiang Hu
- Shandong Engineering Laboratory of Pig and Poultry Healthy Breeding and Disease Diagnosis Technology, Xiajin New Hope Liuhe Agriculture and Animal Husbandry Co., Ltd., Dezhou, China
- Shandong New Hope Liuhe Co., Ltd., Qingdao, China
- Shandong New Hope Liuhe Agriculture and Animal Husbandry Technology Co., Ltd., (NHLH Academy of Swine Research), Dezhou, China
- China Agriculture Research System-Yangling Comprehensive Test Station, Xianyang, China
| | - Xiaogang Tian
- Shandong Engineering Laboratory of Pig and Poultry Healthy Breeding and Disease Diagnosis Technology, Xiajin New Hope Liuhe Agriculture and Animal Husbandry Co., Ltd., Dezhou, China
- Shandong New Hope Liuhe Co., Ltd., Qingdao, China
- Shandong New Hope Liuhe Agriculture and Animal Husbandry Technology Co., Ltd., (NHLH Academy of Swine Research), Dezhou, China
| | - Ranran Lai
- Shandong Engineering Laboratory of Pig and Poultry Healthy Breeding and Disease Diagnosis Technology, Xiajin New Hope Liuhe Agriculture and Animal Husbandry Co., Ltd., Dezhou, China
- Shandong New Hope Liuhe Co., Ltd., Qingdao, China
- Shandong New Hope Liuhe Agriculture and Animal Husbandry Technology Co., Ltd., (NHLH Academy of Swine Research), Dezhou, China
| | - Xinglong Wang
- College of Veterinary Medicine, Northwest A&F University, Xianyang, China
| | - Xiaowen Li
- Shandong Engineering Laboratory of Pig and Poultry Healthy Breeding and Disease Diagnosis Technology, Xiajin New Hope Liuhe Agriculture and Animal Husbandry Co., Ltd., Dezhou, China
- Shandong New Hope Liuhe Co., Ltd., Qingdao, China
- Shandong New Hope Liuhe Agriculture and Animal Husbandry Technology Co., Ltd., (NHLH Academy of Swine Research), Dezhou, China
- China Agriculture Research System-Yangling Comprehensive Test Station, Xianyang, China
- College of Veterinary Medicine, Northwest A&F University, Xianyang, China
- Key Laboratory of Feed and Livestock and Poultry Products Quality and Safety Control, Ministry of Agriculture and Rural Affairs, New Hope Liuhe Co., Ltd., Chengdu, China
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Hu Y, Wang A, Yan W, Li J, Meng X, Chen L, Li S, Tong W, Kong N, Yu L, Yu H, Shan T, Xu J, Tong G, Zheng H. Identification of Linear Epitopes in the C-Terminal Region of ASFV p72 Protein. Microorganisms 2023; 11:2846. [PMID: 38137990 PMCID: PMC10746095 DOI: 10.3390/microorganisms11122846] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Revised: 11/17/2023] [Accepted: 11/17/2023] [Indexed: 12/24/2023] Open
Abstract
African swine fever, which is induced by the African swine fever virus (ASFV), poses a significant threat to the global pig industry due to its high lethality in domestic pigs and wild boars. Despite the severity of the disease, there is a lack of effective vaccines and drugs against the ASFV. The p72 protein, constituting 31 to 33% of the total virus particle mass, serves as the primary capsid protein of ASFV. It is a crucial antigen for the development of ASF subunit vaccines and serological diagnostic methods. In this investigation, 27 monoclonal antibodies (mAbs) were generated through mouse immunization with the truncated C-terminal p72 protein expressed by Escherichia coli. Among these, six mAbs exhibited binding to the p72 trimer, with their respective recognized epitopes identified as 542VTAHGINLIDKF553, 568GNAIKTP574, and 584FALKPREEY592. All three epitopes were situated within the interval sequences of functional units of the C-terminal jelly-roll barrel of p72. Notably, two epitopes, 568GNAIKTP574 and 584FALKPREEY592, were internal to the p72 trimer, while the epitope 542VTAHGINLIDKF553 was exposed on the surface of the trimer and consistently conserved across all ASFV genotypes. These findings enhance our comprehension of the antigenic function and structure of the p72 protein, facilitating the utilization of p72 in the development of diagnostic techniques for ASFV.
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Affiliation(s)
- Yifan Hu
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China; (Y.H.); (A.W.); (W.Y.); (J.L.); (X.M.); (L.C.); (S.L.); (W.T.); (N.K.); (L.Y.); (H.Y.); (T.S.); (G.T.)
| | - Anchen Wang
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China; (Y.H.); (A.W.); (W.Y.); (J.L.); (X.M.); (L.C.); (S.L.); (W.T.); (N.K.); (L.Y.); (H.Y.); (T.S.); (G.T.)
- College of Life Sciences, Anhui Agricultural University, Hefei 230031, China;
| | - Wanwan Yan
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China; (Y.H.); (A.W.); (W.Y.); (J.L.); (X.M.); (L.C.); (S.L.); (W.T.); (N.K.); (L.Y.); (H.Y.); (T.S.); (G.T.)
| | - Junbo Li
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China; (Y.H.); (A.W.); (W.Y.); (J.L.); (X.M.); (L.C.); (S.L.); (W.T.); (N.K.); (L.Y.); (H.Y.); (T.S.); (G.T.)
- College of Wildlife and Protected Area, Northeast Forestry University, Harbin 150040, China
| | - Xin Meng
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China; (Y.H.); (A.W.); (W.Y.); (J.L.); (X.M.); (L.C.); (S.L.); (W.T.); (N.K.); (L.Y.); (H.Y.); (T.S.); (G.T.)
- College of Wildlife and Protected Area, Northeast Forestry University, Harbin 150040, China
| | - Lingchao Chen
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China; (Y.H.); (A.W.); (W.Y.); (J.L.); (X.M.); (L.C.); (S.L.); (W.T.); (N.K.); (L.Y.); (H.Y.); (T.S.); (G.T.)
| | - Songnan Li
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China; (Y.H.); (A.W.); (W.Y.); (J.L.); (X.M.); (L.C.); (S.L.); (W.T.); (N.K.); (L.Y.); (H.Y.); (T.S.); (G.T.)
| | - Wu Tong
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China; (Y.H.); (A.W.); (W.Y.); (J.L.); (X.M.); (L.C.); (S.L.); (W.T.); (N.K.); (L.Y.); (H.Y.); (T.S.); (G.T.)
| | - Ning Kong
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China; (Y.H.); (A.W.); (W.Y.); (J.L.); (X.M.); (L.C.); (S.L.); (W.T.); (N.K.); (L.Y.); (H.Y.); (T.S.); (G.T.)
| | - Lingxue Yu
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China; (Y.H.); (A.W.); (W.Y.); (J.L.); (X.M.); (L.C.); (S.L.); (W.T.); (N.K.); (L.Y.); (H.Y.); (T.S.); (G.T.)
| | - Hai Yu
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China; (Y.H.); (A.W.); (W.Y.); (J.L.); (X.M.); (L.C.); (S.L.); (W.T.); (N.K.); (L.Y.); (H.Y.); (T.S.); (G.T.)
| | - Tongling Shan
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China; (Y.H.); (A.W.); (W.Y.); (J.L.); (X.M.); (L.C.); (S.L.); (W.T.); (N.K.); (L.Y.); (H.Y.); (T.S.); (G.T.)
| | - Jiaping Xu
- College of Life Sciences, Anhui Agricultural University, Hefei 230031, China;
| | - Guangzhi Tong
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China; (Y.H.); (A.W.); (W.Y.); (J.L.); (X.M.); (L.C.); (S.L.); (W.T.); (N.K.); (L.Y.); (H.Y.); (T.S.); (G.T.)
| | - Hao Zheng
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China; (Y.H.); (A.W.); (W.Y.); (J.L.); (X.M.); (L.C.); (S.L.); (W.T.); (N.K.); (L.Y.); (H.Y.); (T.S.); (G.T.)
- Jiangsu Co-Innovation Center for the Prevention and Control of Important Animal Infectious Disease and Zoonosis, Yangzhou University, Yangzhou 225009, China
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Juszkiewicz M, Walczak M, Woźniakowski G, Podgórska K. African Swine Fever: Transmission, Spread, and Control through Biosecurity and Disinfection, Including Polish Trends. Viruses 2023; 15:2275. [PMID: 38005951 PMCID: PMC10674562 DOI: 10.3390/v15112275] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Revised: 10/11/2023] [Accepted: 11/17/2023] [Indexed: 11/26/2023] Open
Abstract
African swine fever is a contagious disease, affecting pigs and wild boars, which poses a major threat to the pig industry worldwide and, therefore, to the agricultural economies of many countries. Despite intensive studies, an effective vaccine against the disease has not yet been developed. Since 2007, ASFV has been circulating in Eastern and Central Europe, covering an increasingly large area. As of 2018, the disease is additionally spreading at an unprecedented scale in Southeast Asia, nearly ruining China's pig-producing sector and generating economic losses of approximately USD 111.2 billion in 2019. ASFV's high resistance to environmental conditions, together with the lack of an approved vaccine, plays a key role in the spread of the disease. Therefore, the biosecurity and disinfection of pig farms are the only effective tools through which to prevent ASFV from entering the farms. The selection of a disinfectant, with research-proven efficacy and proper use, taking into account environmental conditions, exposure time, pH range, and temperature, plays a crucial role in the disinfection process. Despite the significant importance of ASF epizootics, little information is available on the effectiveness of different disinfectants against ASFV. In this review, we have compiled the current knowledge on the transmission, spread, and control of ASF using the principles of biosecurity, with particular attention to disinfection, including a perspective based on Polish experience with ASF control.
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Affiliation(s)
- Małgorzata Juszkiewicz
- Department of Swine Diseases, National Veterinary Research Institute, Partyzantów 57 Avenue, 24-100 Puławy, Poland; (M.W.); (K.P.)
| | - Marek Walczak
- Department of Swine Diseases, National Veterinary Research Institute, Partyzantów 57 Avenue, 24-100 Puławy, Poland; (M.W.); (K.P.)
| | - Grzegorz Woźniakowski
- Department of Diagnostics and Clinical Sciences, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University in Toruń, Lwowska 1 Street, 87-100 Toruń, Poland;
| | - Katarzyna Podgórska
- Department of Swine Diseases, National Veterinary Research Institute, Partyzantów 57 Avenue, 24-100 Puławy, Poland; (M.W.); (K.P.)
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Ito S, Kawaguchi N, Bosch J, Aguilar-Vega C, Sánchez-Vizcaíno JM. What can we learn from the five-year African swine fever epidemic in Asia? Front Vet Sci 2023; 10:1273417. [PMID: 37841468 PMCID: PMC10569053 DOI: 10.3389/fvets.2023.1273417] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2023] [Accepted: 09/11/2023] [Indexed: 10/17/2023] Open
Abstract
Today's global swine industry is exposed to the unprecedented threat of African swine fever (ASF). Asia, the site of the most recent epidemics, could serve as a huge viral reservoir for the rest of the world given the severity of the damage, the huge swine industry, and the high volume of trade with other countries around the world. As the majority of ASF notifications in Asia today originate from pig farms, the movement of live pigs and associated pork products are considered critical control points for disease management. Particularly, small-scale or backyard farms with low biosecurity levels are considered major risk factors. Meanwhile, wild boars account for most notified cases in some countries and regions, which makes the epidemiological scenario different from that in other Asian countries. As such, the current epidemic situation and higher risk factors differ widely between these countries. A variety of studies on ASF control have been conducted and many valuable insights have been obtained in Asia; nevertheless, the overall picture of the epidemic is still unclear. The purpose of this review is to provide an accurate picture of the epidemic situation across Asia, focusing on each subregion to comprehensively explain the disease outbreak. The knowledge gained from the ASF epidemics experienced in Asia over the past 5 years would be useful for disease control in areas that are already infected, such as Europe, as well as for non-affected areas to address preventive measures. To this end, the review includes two aspects: a descriptive analytical review based on publicly available databases showing overall epidemic trends, and an individualized review at the subregional level based on the available literature.
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Affiliation(s)
- Satoshi Ito
- VISAVET Health Surveillance Center, Complutense University of Madrid, Madrid, Spain
- Department of Animal Health, Faculty of Veterinary Medicine, Complutense University of Madrid, Madrid, Spain
| | - Nijiho Kawaguchi
- VISAVET Health Surveillance Center, Complutense University of Madrid, Madrid, Spain
- Department of Animal Health, Faculty of Veterinary Medicine, Complutense University of Madrid, Madrid, Spain
- Division of Molecular Pathobiology, Hokkaido University International Institute for Zoonosis Control, Sapporo, Japan
| | - Jaime Bosch
- VISAVET Health Surveillance Center, Complutense University of Madrid, Madrid, Spain
- Department of Animal Health, Faculty of Veterinary Medicine, Complutense University of Madrid, Madrid, Spain
| | - Cecilia Aguilar-Vega
- VISAVET Health Surveillance Center, Complutense University of Madrid, Madrid, Spain
- Department of Animal Health, Faculty of Veterinary Medicine, Complutense University of Madrid, Madrid, Spain
| | - Jose Manuel Sánchez-Vizcaíno
- VISAVET Health Surveillance Center, Complutense University of Madrid, Madrid, Spain
- Department of Animal Health, Faculty of Veterinary Medicine, Complutense University of Madrid, Madrid, Spain
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Cho KH, Hong SK, Kim DY, Jang MK, Kim JH, Lee H, Kim EM, Park JH, Suh TY, Choi JG, Yoo DS, Kang HE, Kim YH. Pathogenicity and Pathological Characteristics of African Swine Fever Virus Strains from Pig Farms in South Korea from 2022 to January 2023. Pathogens 2023; 12:1158. [PMID: 37764966 PMCID: PMC10534632 DOI: 10.3390/pathogens12091158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 09/06/2023] [Accepted: 09/11/2023] [Indexed: 09/29/2023] Open
Abstract
Since the first African swine fever (ASF) outbreak occurred at a pig farm in South Korea in September 2019, as of 31 January 2023, 31 ASF cases have occurred at pig farms, while 2799 ASF virus (ASFV)-infected wild boars have been identified. The circulation of ASFV in wild boar populations poses a high risk of spillover to pig farms in the country. However, information on the changes in the pathogenicity of Korean ASFV strains from wild boars is not available. Investigating the pathogenicity of ASFV strains from pig farms is the only way to predict their alterations. In a previous study, no changes in the pathogenicity of ASFV strains circulating during 2019-2021 were identified through animal experiments. In this study, we chose two ASFV strains with potentially reduced pathogenicity among ten viruses obtained from pig premises from 2022 to January 2023 and estimated their pathogenicities and pathological characteristics. All the inoculated pigs died 8-10 days post-inoculation after showing pyrexia, depression, anorexia, and recumbency together with the common pathological lesions of enlarged hemorrhagic lymph nodes and splenomegaly with infarction. These results support that the pathogenicity among ASFV isolates in South Korea still remained unchanged during the study period.
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Affiliation(s)
- Ki-Hyun Cho
- Foreign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea; (K.-H.C.); (S.-K.H.); (D.-Y.K.); (M.-K.J.); (J.-H.P.); (T.-Y.S.); (J.-G.C.); (H.-E.K.)
| | - Seong-Keun Hong
- Foreign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea; (K.-H.C.); (S.-K.H.); (D.-Y.K.); (M.-K.J.); (J.-H.P.); (T.-Y.S.); (J.-G.C.); (H.-E.K.)
| | - Da-Young Kim
- Foreign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea; (K.-H.C.); (S.-K.H.); (D.-Y.K.); (M.-K.J.); (J.-H.P.); (T.-Y.S.); (J.-G.C.); (H.-E.K.)
| | - Min-Kyung Jang
- Foreign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea; (K.-H.C.); (S.-K.H.); (D.-Y.K.); (M.-K.J.); (J.-H.P.); (T.-Y.S.); (J.-G.C.); (H.-E.K.)
| | - Jong-Ho Kim
- Animal Disease Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea; (J.-H.K.); (H.L.); (E.-M.K.)
| | - Hyunkyoung Lee
- Animal Disease Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea; (J.-H.K.); (H.L.); (E.-M.K.)
| | - Eun-Mi Kim
- Animal Disease Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea; (J.-H.K.); (H.L.); (E.-M.K.)
| | - Ji-Hoon Park
- Foreign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea; (K.-H.C.); (S.-K.H.); (D.-Y.K.); (M.-K.J.); (J.-H.P.); (T.-Y.S.); (J.-G.C.); (H.-E.K.)
| | - Tae-Young Suh
- Foreign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea; (K.-H.C.); (S.-K.H.); (D.-Y.K.); (M.-K.J.); (J.-H.P.); (T.-Y.S.); (J.-G.C.); (H.-E.K.)
| | - Jun-Gu Choi
- Foreign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea; (K.-H.C.); (S.-K.H.); (D.-Y.K.); (M.-K.J.); (J.-H.P.); (T.-Y.S.); (J.-G.C.); (H.-E.K.)
| | - Dae-Sung Yoo
- College of Veterinary Medicine, Chonnam National University, Gwangju 61186, Republic of Korea;
| | - Hae-Eun Kang
- Foreign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea; (K.-H.C.); (S.-K.H.); (D.-Y.K.); (M.-K.J.); (J.-H.P.); (T.-Y.S.); (J.-G.C.); (H.-E.K.)
| | - Yeon-Hee Kim
- Foreign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea; (K.-H.C.); (S.-K.H.); (D.-Y.K.); (M.-K.J.); (J.-H.P.); (T.-Y.S.); (J.-G.C.); (H.-E.K.)
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Puzankova O, Gavrilova V, Chernyshev R, Kolbin I, Igolkin A, Sprygin A, Chvala I, Mazloum A. Novel Protocol for the Preparation of Porcine Bone Marrow Primary Cell Culture for African Swine Fever Virus Isolation. Methods Protoc 2023; 6:73. [PMID: 37736956 PMCID: PMC10514816 DOI: 10.3390/mps6050073] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2023] [Revised: 08/11/2023] [Accepted: 08/23/2023] [Indexed: 09/23/2023] Open
Abstract
Isolation of African swine fever virus (ASFV) is a critical step towards the identification, titration, characterization, and even modification of the virus. Therefore, it is important to identify a suitable cell line that supports the efficient replication of ASFV for these purposes. This should be achieved even when starting with a low virus load, as in the case of isolating the virus from field samples. This article presents a detailed protocol on the preparation of porcine bone marrow primary (PBMP) cell culture, which has a high sensitivity towards ASFV, resulting in high viral yields with a minimal risk of bacterial contamination.
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Affiliation(s)
| | | | | | | | | | | | | | - Ali Mazloum
- FGBI Federal Centre for Animal Health, 600901 Vladimir, Russia; (O.P.); (V.G.); (R.C.); (I.K.); (A.I.); (A.S.); (I.C.)
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